About the Authors

Vu Thi Ty Hang

Affiliation Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Viet Nam

Edward C. Holmes

Affiliations Center for Infectious Disease Dynamics, Department of Biology, The Pennsylvania State University, University Park, Pennsylvania, United States of America, Fogarty International Center, National Institutes of Health, Bethesda, Maryland, United States of America

Duong Veasna

Affiliation Institute Pasteur in Cambodia, Phnom Penh, Cambodia

Nguyen Thien Quy

Affiliation Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Viet Nam

Tran Tinh Hien

Affiliation Hospital for Tropical Diseases, Ho Chi Minh City, Viet Nam

Michael Quail

Affiliation Wellcome Trust Sanger Institute, Hinxton, United Kingdom

Carol Churcher

Affiliation Wellcome Trust Sanger Institute, Hinxton, United Kingdom

Julian Parkhill

Affiliation Wellcome Trust Sanger Institute, Hinxton, United Kingdom

Jane Cardosa

Affiliation Institute of Health and Community Medicine of the University of Malaysia, Sarawak, Malaysia

Jeremy Farrar

Affiliation Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Viet Nam

Bridget Wills

Affiliation Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Viet Nam

Niall J. Lennon

Affiliation Broad Institute, Cambridge, Massachusetts, United States of America

Bruce W. Birren

Affiliation Broad Institute, Cambridge, Massachusetts, United States of America

Philippe Buchy

Affiliation Institute Pasteur in Cambodia, Phnom Penh, Cambodia

Matthew R. Henn

Contributed equally to this work with: Matthew R. Henn, Cameron P. Simmons

Affiliation Broad Institute, Cambridge, Massachusetts, United States of America

Cameron P. Simmons

Contributed equally to this work with: Matthew R. Henn, Cameron P. Simmons

csimmons@oucru.org

Affiliation Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Viet Nam

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: TTH JF BW BWB MRH CPS. Performed the experiments: VTTH DV NTQ MQ JC NJL PB MRH CPS. Analyzed the data: VTTH ECH DV NTQ MQ CC JC NJL PB MRH CPS. Contributed reagents/materials/analysis tools: ECH JP NJL BWB PB. Wrote the paper: ECH TTH CPS.