A Half-Century of Inspiration: An Interview with Hamilton Smith

Jane Gitschier

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002466

Tempo and Mode in Evolution of Transcriptional Regulation

Kacy L. Gordon, Ilya Ruvinsky

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002432

Two-Component Elements Mediate Interactions between Cytokinin and Salicylic Acid in Plant Immunity

Cristiana T. Argueso, Fernando J. Ferreira, Petra Epple, Jennifer P. C. To, Claire E. Hutchison, G. Eric Schaller, Jeffery L. Dangl, Joseph J. Kieber

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002448

Inference of Population Structure using Dense Haplotype Data

Daniel John Lawson, Garrett Hellenthal, Simon Myers, Daniel Falush

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002453

A Genome-Wide Association Study Identified AFF1 as a Susceptibility Locus for Systemic Lupus Eyrthematosus in Japanese

Yukinori Okada, Kenichi Shimane, Yuta Kochi, Tomoko Tahira, Akari Suzuki, Koichiro Higasa, Atsushi Takahashi, Tetsuya Horita, Tatsuya Atsumi, Tomonori Ishii, Akiko Okamoto, Keishi Fujio, Michito Hirakata, Hirofumi Amano, Yuya Kondo, Satoshi Ito, Kazuki Takada, Akio Mimori, Kazuyoshi Saito, Makoto Kamachi, Yasushi Kawaguchi, Katsunori Ikari, Osman Wael Mohammed, Koichi Matsuda, Chikashi Terao, Koichiro Ohmura, Keiko Myouzen, Naoya Hosono, Tatsuhiko Tsunoda, Norihiro Nishimoto, Tsuneyo Mimori, Fumihiko Matsuda, Yoshiya Tanaka, Takayuki Sumida, Hisashi Yamanaka, Yoshinari Takasaki, Takao Koike, Takahiko Horiuchi, Kenshi Hayashi, Michiaki Kubo, Naoyuki Kamatani, Ryo Yamada, Yusuke Nakamura, Kazuhiko Yamamoto

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002455

Reduced Lentivirus Susceptibility in Sheep with TMEM154 Mutations

Michael P. Heaton, Michael L. Clawson, Carol G. Chitko-Mckown, Kreg A. Leymaster, Timothy P. L. Smith, Gregory P. Harhay, Stephen N. White, Lynn M. Herrmann-Hoesing, Michelle R. Mousel, Gregory S. Lewis, Theodore S. Kalbfleisch, James E. Keen, William W. Laegreid

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002467

USF-1 Is Critical for Maintaining Genome Integrity in Response to UV-Induced DNA Photolesions

Yorann Baron, Sébastien Corre, Nicolas Mouchet, Sophie Vaulont, Sharon Prince, Marie-Dominique Galibert

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002470

Heterochromatin Formation Promotes Longevity and Represses Ribosomal RNA Synthesis

Kimberly Larson, Shian-Jang Yan, Amy Tsurumi, Jacqueline Liu, Jun Zhou, Kriti Gaur, Dongdong Guo, Thomas H. Eickbush, Willis X. Li

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002473

High-Density SNP Mapping of the HLA Region Identifies Multiple Independent Susceptibility Loci Associated with Selective IgA Deficiency

Ricardo C. Ferreira, Qiang Pan-Hammarström, Robert R. Graham, Gumersindo Fontán, Annette T. Lee, Ward Ortmann, Ning Wang, Elena Urcelay, Miguel Fernández-Arquero, Concepción Núñez, Gudmundur Jorgensen, Björn R. Ludviksson, Sinikka Koskinen, Katri Haimila, Leonid Padyukov, Peter K. Gregersen, Lennart Hammarström, Timothy W. Behrens

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002476

A Genome-Wide Association Scan on the Levels of Markers of Inflammation in Sardinians Reveals Associations That Underpin Its Complex Regulation

Silvia Naitza, Eleonora Porcu, Maristella Steri, Dennis D. Taub, Antonella Mulas, Xiang Xiao, James Strait, Mariano Dei, Sandra Lai, Fabio Busonero, Andrea Maschio, Gianluca Usala, Magdalena Zoledziewska, Carlo Sidore, Ilenia Zara, Maristella Pitzalis, Alessia Loi, Francesca Virdis, Roberta Piras, Francesca Deidda, Michael B. Whalen, Laura Crisponi, Antonio Concas, Carlo Podda, Sergio Uzzau, Paul Scheet, Dan L. Longo, Edward Lakatta, Gonçalo R. Abecasis, Antonio Cao, David Schlessinger, Manuela Uda, Serena Sanna, Francesco Cucca

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002480

A Flexible Bayesian Model for Studying Gene–Environment Interaction

Kai Yu, Sholom Wacholder, William Wheeler, Zhaoming Wang, Neil Caporaso, Maria Teresa Landi, Faming Liang

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002482

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

Robert Kofler, Andrea J. Betancourt, Christian Schlötterer

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002487

Sex Pheromone Evolution Is Associated with Differential Regulation of the Same Desaturase Gene in Two Genera of Leafroller Moths

Jérôme Albre, Marjorie A. Liénard, Tamara M. Sirey, Silvia Schmidt, Leah K. Tooman, Colm Carraher, David R. Greenwood, Christer Löfstedt, Richard D. Newcomb

PLOS Genetics: published January 26, 2012 | https://doi.org/10.1371/journal.pgen.1002489

Unraveling the Regulatory Mechanisms Underlying Tissue-Dependent Genetic Variation of Gene Expression

Jingyuan Fu, Marcel G. M. Wolfs, Patrick Deelen, Harm-Jan Westra, Rudolf S. N. Fehrmann, Gerard J. te Meerman, Wim A. Buurman, Sander S. M. Rensen, Harry J. M. Groen, Rinse K. Weersma, Leonard H. van den Berg, Jan Veldink, Roel A. Ophoff, Harold Snieder, David van Heel, Ritsert C. Jansen, Marten H. Hofker, Cisca Wijmenga, Lude Franke

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002431

A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli

Olin K. Silander, Nela Nikolic, Alon Zaslaver, Anat Bren, Ilya Kikoin, Uri Alon, Martin Ackermann

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002443

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DNA Methylation and Gene Expression Changes in Monozygotic Twins Discordant for Psoriasis: Identification of Epigenetically Dysregulated Genes

Kristina Gervin, Magnus D. Vigeland, Morten Mattingsdal, Martin Hammerø, Heidi Nygård, Anne O. Olsen, Ingunn Brandt, Jennifer R. Harris, Dag E. Undlien, Robert Lyle

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002454

Adaptation and Preadaptation of Salmonella enterica to Bile

Sara B. Hernández, Ignacio Cota, Adrien Ducret, Laurent Aussel, Josep Casadesús

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002459

Cohesin Protects Genes against γH2AX Induced by DNA Double-Strand Breaks

Pierre Caron, Francois Aymard, Jason S. Iacovoni, Sébastien Briois, Yvan Canitrot, Beatrix Bugler, Laurent Massip, Ana Losada, Gaëlle Legube

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002460

A Spontaneous Mutation of the Rat Themis Gene Leads to Impaired Function of Regulatory T Cells Linked to Inflammatory Bowel Disease

Marianne Chabod, Christophe Pedros, Lucille Lamouroux, Céline Colacios, Isabelle Bernard, Dominique Lagrange, Daniela Balz-Hara, Jean-Francois Mosnier, Christian Laboisse, Nathalie Vergnolle, Olivier Andreoletti, Marie-Paule Roth, Roland Liblau, Gilbert J. Fournié, Abdelhadi Saoudi, Anne S. Dejean

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002461

RIC-7 Promotes Neuropeptide Secretion

Yingsong Hao, Zhitao Hu, Derek Sieburth, Joshua M. Kaplan

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002464

Progressive Polycomb Assembly on H3K27me3 Compartments Generates Polycomb Bodies with Developmentally Regulated Motion

Thierry Cheutin, Giacomo Cavalli

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002465

Nucleolar Association and Transcriptional Inhibition through 5S rDNA in Mammals

Andrew M. Fedoriw, Joshua Starmer, Della Yee, Terry Magnuson

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002468

Insulin Signaling Regulates Fatty Acid Catabolism at the Level of CoA Activation

Xiaojun Xu, Peddinti Gopalacharyulu, Tuulikki Seppänen-Laakso, Anna-Liisa Ruskeepää, Cho Cho Aye, Brian P. Carson, Silvia Mora, Matej Orešič, Aurelio A. Teleman

PLOS Genetics: published January 19, 2012 | https://doi.org/10.1371/journal.pgen.1002478

Genomic Ancestry of North Africans Supports Back-to-Africa Migrations

Brenna M. Henn, Laura R. Botigué, Simon Gravel, Wei Wang, Abra Brisbin, Jake K. Byrnes, Karima Fadhlaoui-Zid, Pierre A. Zalloua, Andres Moreno-Estrada, Jaume Bertranpetit, Carlos D. Bustamante, David Comas

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002397

The Drosophila melanogaster Seminal Fluid Protease “Seminase” Regulates Proteolytic and Post-Mating Reproductive Processes

Brooke A. LaFlamme, K. Ravi Ram, Mariana F. Wolfner

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002435

Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli

Selwyn Quan, J. Christian J. Ray, Zakari Kwota, Trang Duong, Gábor Balázsi, Tim F. Cooper, Russell D. Monds

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002444

A Gene Regulatory Network for Root Epidermis Cell Differentiation in Arabidopsis

Angela Bruex, Raghunandan M. Kainkaryam, Yana Wieckowski, Yeon Hee Kang, Christine Bernhardt, Yang Xia, Xiaohua Zheng, Jean Y. Wang, Myeong Min Lee, Philip Benfey, Peter J. Woolf, John Schiefelbein

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002446

An siRNA Screen in Pancreatic Beta Cells Reveals a Role for Gpr27 in Insulin Production

Gregory M. Ku, Zachary Pappalardo, Chun Chieh Luo, Michael S. German, Michael T. McManus

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002449

Cdc5-Dependent Asymmetric Localization of Bfa1 Fine-Tunes Timely Mitotic Exit

Junwon Kim, Guangming Luo, Young Yil Bahk, Kiwon Song

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002450

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

Molly E. McCue, Danika L. Bannasch, Jessica L. Petersen, Jessica Gurr, Ernie Bailey, Matthew M. Binns, Ottmar Distl, Gérard Guérin, Telhisa Hasegawa, Emmeline W. Hill, Tosso Leeb, Gabriella Lindgren, M. Cecilia T. Penedo, Knut H. Røed, Oliver A. Ryder, June E. Swinburne, Teruaki Tozaki, Stephanie J. Valberg, Mark Vaudin, Kerstin Lindblad-Toh, Claire M. Wade, James R. Mickelson

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002451

Genetic Evidence for an Indispensable Role of Somatic Embryogenesis Receptor Kinases in Brassinosteroid Signaling

Xiaoping Gou, Hongju Yin, Kai He, Junbo Du, Jing Yi, Shengbao Xu, Honghui Lin, Steven D. Clouse, Jia Li

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002452

Cytoplasmic Polyadenylation Element Binding Protein Deficiency Stimulates PTEN and Stat3 mRNA Translation and Induces Hepatic Insulin Resistance

Ilya M. Alexandrov, Maria Ivshina, Dae Young Jung, Randall Friedline, Hwi Jin Ko, Mei Xu, Bryan O'Sullivan-Murphy, Rita Bortell, Yen-Tsung Huang, Fumihiko Urano, Jason K. Kim, Joel D. Richter

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002457

Parallel Mapping and Simultaneous Sequencing Reveals Deletions in BCAN and FAM83H Associated with Discrete Inherited Disorders in a Domestic Dog Breed

Oliver P. Forman, Jacques Penderis, Claudia Hartley, Louisa J. Hayward, Sally L. Ricketts, Cathryn S. Mellersh

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002462

Calpains Mediate Integrin Attachment Complex Maintenance of Adult Muscle in Caenorhabditis elegans

Timothy Etheridge, Elizabeth A. Oczypok, Susann Lehmann, Brandon D. Fields, Freya Shephard, Lewis A. Jacobson, Nathaniel J. Szewczyk

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002471

Genome Engineering in Vibrio cholerae: A Feasible Approach to Address Biological Issues

Marie-Eve Val, Ole Skovgaard, Magaly Ducos-Galand, Michael J. Bland, Didier Mazel

PLOS Genetics: published January 12, 2012 | https://doi.org/10.1371/journal.pgen.1002472

Functional Specialization of the Plant miR396 Regulatory Network through Distinct MicroRNA–Target Interactions

Juan M. Debernardi, Ramiro E. Rodriguez, Martin A. Mecchia, Javier F. Palatnik

PLOS Genetics: published January 5, 2012 | https://doi.org/10.1371/journal.pgen.1002419

Microenvironmental Regulation by Fibrillin-1

Gerhard Sengle, Ko Tsutsui, Douglas R. Keene, Sara F. Tufa, Eric J. Carlson, Noe L. Charbonneau, Robert N. Ono, Takako Sasaki, Mary K. Wirtz, John R. Samples, Liselotte I. Fessler, John H. Fessler, Kiyotoshi Sekiguchi, Susan J. Hayflick, Lynn Y. Sakai

PLOS Genetics: published January 5, 2012 | https://doi.org/10.1371/journal.pgen.1002425

Genome-Wide Assessment of AU-Rich Elements by the AREScore Algorithm

Milan Spasic, Caroline C. Friedel, Johanna Schott, Jochen Kreth, Kathrin Leppek, Sarah Hofmann, Sevim Ozgur, Georg Stoecklin

PLOS Genetics: published January 5, 2012 | https://doi.org/10.1371/journal.pgen.1002433

Checkpoints in a Yeast Differentiation Pathway Coordinate Signaling during Hyperosmotic Stress

Michal J. Nagiec, Henrik G. Dohlman

PLOS Genetics: published January 5, 2012 | https://doi.org/10.1371/journal.pgen.1002437

Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks

Hisato Kobayashi, Takayuki Sakurai, Misaki Imai, Nozomi Takahashi, Atsushi Fukuda, Obata Yayoi, Shun Sato, Kazuhiko Nakabayashi, Kenichiro Hata, Yusuke Sotomaru, Yutaka Suzuki, Tomohiro Kono

PLOS Genetics: published January 5, 2012 | https://doi.org/10.1371/journal.pgen.1002440

Poly(ADP-Ribose) Polymerase 1 (PARP-1) Regulates Ribosomal Biogenesis in Drosophila Nucleoli

Ernest K. Boamah, Elena Kotova, Mikael Garabedian, Michael Jarnik, Alexei V. Tulin

PLOS Genetics: published January 5, 2012 | https://doi.org/10.1371/journal.pgen.1002442

The Yeast Complex I Equivalent NADH Dehydrogenase Rescues pink1 Mutants

Sven Vilain, Giovanni Esposito, Dominik Haddad, Onno Schaap, Mariya P. Dobreva, Melissa Vos, Stefanie Van Meensel, Vanessa A. Morais, Bart De Strooper, Patrik Verstreken

PLOS Genetics: published January 5, 2012 | https://doi.org/10.1371/journal.pgen.1002456