SEQ_NAME	START	END	STRAND	FEATURE_NAME	TXN_START	TXN_END	EXON_COUNT	EXON_STARTS	EXON_ENDS	CDS_START	CDS_END	GENE_NAME	ALIASES	DESCRIPTION
Ca19-mtDNA	18	3148	+	caalfmr16	18	3148	1	18	3148			RRNL	mtLsurRNA	Mitochondrial ribosomal RNA of the large ribosomal subunit [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca19-mtDNA	3172	3242	+	caalfmt18	3172	3242	1	3172	3242			TRNA		Mitochondrial alanine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	3275	4063	+	caalfmp01	3275	4063	1	3275	4063	3275	4063	COX2		Subunit II of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	4002	4072	+	caalfmt19	4002	4072	1	4002	4072			TRNN		Mitochondrial asparagine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	4131	4571	+	caalfmp02	4131	4571	1	4131	4571	4131	4571	NAD6		Subunit 6 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca19-mtDNA	4571	5524	+	caalfmp03	4571	5524	1	4571	5524	4571	5524	NAD1		Subunit 6 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	9929	10738	-	caalfmp04	9929	10738	1	10738	9929	9929	10738	COX3A		Subunit III of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; identical to Cox3Bp; one of three mitochondrially-encoded subunits [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	10778	10849	+	caalfmt20	10778	10849	1	10778	10849			TRNK1		Mitochondrial lysine tRNA, one of two lysine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11525	11606	+	caalfmt21	11525	11606	1	11525	11606			TRNL1		Mitochondrial leucine tRNA, one of three leucine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11614	11696	+	caalfmt22	11614	11696	1	11614	11696			TRNY1		Mitochondrial tyrosine tRNA, one of two tyrosine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11704	11774	+	caalfmt23	11704	11774	1	11704	11774			TRNH1		Mitochondrial histidine tRNA, one of two histidine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11780	11852	+	caalfmt24	11780	11852	1	11780	11852			TRNT1		Mitochondrial threonine tRNA, one of two threonine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11856	11926	+	caalfmt25	11856	11926	1	11856	11926			TRNE1		Mitochondrial glutamate tRNA, one of two glutamate tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	12456	12731	-	caalfmp05	12456	12731	1	12731	12456	12469	12699	ATP9		Subunit 9 of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca19-mtDNA	12739	12809	+	caalfmt26	12739	12809	1	12739	12809			TRNI		Mitochondrial isoleucine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	12895	13709	-	caalfmp06	12895	13709	1	13709	12895	12895	13635	ATP6		Subunit 6 of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca19-mtDNA	13731	13906	-	caalfmp07	13731	13906	1	13906	13731	13760	13906	ATP8		Subunit 8 of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca19-mtDNA	13945	14017	+	caalfmt27	13945	14017	1	13945	14017			TRNP		Mitochondrial proline tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	14104	14174	+	caalfmt28	14104	14174	1	14104	14174			TRNC		Mitochondrial cysteine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	14181	14251	+	caalfmt29	14181	14251	1	14181	14251			TRNG		Mitochondrial glycine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	14771	20926	+	caalfmp08	14771	20926	5	14771|16351|18012|19002|20445	15163|16674|18020|19389|20926	14771	20926	COX1		Subunit I of cytochrome c oxidase, which is the terminal member of the mitochondrial (mt) inner membrane electron transport chain; one of three mt-encoded subunits; alternatively spliced transcripts encode 4 putative splicing endonucleases [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca19-mtDNA	14771	16264	+	CaalfMp08.1	14771	16264	1	14771	16264	14771	16264			Putative endonuclease encoded by the first exon and part of the first intron of the mitochondrial COX1 gene; C-terminus contains a LAGLIDADG domain found in intron-encoded endonucleases; conserved in fungal mitochondria
Ca19-mtDNA	14771	17625	+	CaalfMp08.2	14771	17625	2	14771|16351	15163|17625	14771	17625			Putative endonuclease encoded by the first two exons and part of the second intron of the mitochondrial COX1 gene; C-terminus contains a LAGLIDADG domain found in intron-encoded endonucleases; conserved in fungal mitochondria
Ca19-mtDNA	14771	18980	+	CaalfMp08.3	14771	18980	3	14771|16351|18012	15163|16674|18980	14771	18980			Putative endonuclease encoded by the first three exons and part of the third intron of the mitochondrial COX1 gene; C-terminus contains a LAGLIDADG domain found in intron-encoded endonucleases; conserved in fungal mitochondria
Ca19-mtDNA	14771	20120	+	CaalfMp08.4	14771	20120	4	14771|16351|18012|19002	15163|16674|18020|20120	14771	20120			Putative endonuclease encoded by the first four exons and part of the fourth intron of the mitochondrial COX1 gene; C-terminus contains a LAGLIDADG domain found in intron-encoded endonucleases; conserved in fungal mitochondria
Ca19-mtDNA	21066	21136	+	caalfmt30	21066	21136	1	21066	21136			TRNR1		Mitochondrial arginine tRNA, one of two arginine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21155	21225	+	caalfmt31	21155	21225	1	21155	21225			TRNV		Mitochondrial valine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21228	21298	+	caalfmt32	21228	21298	1	21228	21298			TRNW		Mitochondrial tryptophan tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21299	21369	+	caalfmt33	21299	21369	1	21299	21369			TRNF		Mitochondrial phenylalanine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21408	21478	+	caalfmt34	21408	21478	1	21408	21478			TRNR2		Mitochondrial arginine tRNA, one of two arginine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21422	22849	+	caalfmp09	21422	22849	1	21422	22849	21422	22849	NAD2		Subunit 2 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	22849	23238	+	caalfmp10	22849	23238	1	22849	23238	22849	23238	NAD3		Subunit 3 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	23288	23498	+	ntar_1	23288	23498	1	23288	23498					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca19-mtDNA	23997	26808	+	caalfmp11	23997	26808	3	23997|25695|26074	24389|25730|26808	23997	26808	COB		Cytochrome b, mitochondrially encoded subunit of the ubiquinol-cytochrome c reductase complex (complex III) that catalyzes a step in the respiratory chain of the mitochondrial inner membrane [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca19-mtDNA	23997	25434	+	caalfmp11.1	23997	25434	1	23997	25434	23997	25434			Putative endonuclease encoded by the first exon and part of the first intron of the mitochondrial COB gene; C-terminus contains a GIY-YIG domain found in intron-encoded endonucleases; conserved in fungal mitochondria [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca19-mtDNA	26935	27005	+	caalfmt35	26935	27005	1	26935	27005			TRNM1		Mitochondrial methionine tRNA, one of two methionine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	27022	28483	+	caalfmr17	27022	28483	1	27022	28483			RRNS		Mitochondrial ribosomal RNA of the small ribosomal subunit [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	29570	29824	+	caalfmp12	29570	29824	1	29570	29824	29570	29824	NAD4L		Subunit 4L of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	29824	31482	+	caalfmp13	29824	31482	1	29824	31482	29824	31482	NAD5		Subunit 5 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	31492	31563	+	caalfmt36	31492	31563	1	31492	31563			TRNQ		Mitochondrial glutamine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	31570	31641	+	caalfmt37	31570	31641	1	31570	31641			TRND		Mitochondrial aspartate tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	31646	31729	+	caalfmt38	31646	31729	1	31646	31729			TRNS1		Mitochondrial serine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	31925	32005	+	caalfmt39	31925	32005	1	31925	32005			TRNS2		Mitochondrial serine tRNA, one of two serine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	32015	32088	+	caalfmt40	32015	32088	1	32015	32088			TRNL2		Mitochondrial leucine tRNA, one of three leucine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	32120	33514	+	caalfmp14	32120	33514	1	32120	33514	32120	33514	NAD4		Subunit 4 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	33486	33557	+	caalfmt41	33486	33557	1	33486	33557			TRNM2		Mitochondrial methionine tRNA, one of two methionine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34034	34104	+	caalfmt42	34034	34104	1	34034	34104			TRNE2		Mitochondrial glutamate tRNA, one of two glutamate tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34108	34180	+	caalfmt43	34108	34180	1	34108	34180			TRNT2		Mitochondrial threonine tRNA, one of two threonine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34186	34256	+	caalfmt44	34186	34256	1	34186	34256			TRNH2		Mitochondrial histidine tRNA, one of two histidine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34264	34346	+	caalfmt45	34264	34346	1	34264	34346			TRNY2		Mitochondrial tyrosine tRNA, one of two tyrosine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34354	34435	+	caalfmt46	34354	34435	1	34354	34435			TRNL3		Mitochondrial leucine tRNA, one of three leucine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	35111	35182	+	caalfmt47	35111	35182	1	35111	35182			TRNK2		Mitochondrial lysine tRNA, one of two lysine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	35222	36031	+	caalfmp15	35222	36031	1	35222	36031	35222	36031	COX3B		Subunit III of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; identical to Cox3Ap; one of three mitochondrially-encoded subunits [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1349	1602	-	ntar_2	1349	1602	1	1602	1349					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1645	2326	+	ntar_3	1645	2326	1	1645	2326	2051	2242			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2563	2943	+	ntar_4	2563	2943	1	2563	2943	2571	2810			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2958	3663	-	ntar_5	2958	3663	1	3663	2958					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3934	4136	-	ntar_6	3934	4136	1	4136	3934					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	4059	4397	+	orf19.6115	4059	4397	1	4059	4397	4059	4397		orf19.13534|IPF21113.1|IPF27828.1|CaO19.11880|CaO19.4402|CaO19.6115|CaO19.13534	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	4409	5290	-	orf19.6114	4409	5290	1	5290	4409	4720	4409		orf19.13533|IPF21135.1|IPF27840.1|orf6.6227|CaO19.13533|CaO19.6114	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	8597	8908	-	orf19.6113	8597	8908	1	8908	8597	8908	8597		orf19.13532|IPF21132.1|IPF10769.1|orf6.6228|CaO19.6113|CaO19.13532	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	9972	10135	-	ntar_7	9972	10135	1	10135	9972					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	10718	11485	+	orf19.6112	10718	11485	1	10718	11485	10718	11485	CTA2	orf19.13531|IPF21081.1|IPF10779.1|orf6.6229|CA3851|CTA21|TLO3|CTA210|CaO19.6112|CaO19.13531	Putative transcriptional activator, activates transcription in 1-hybrid assay in S. cerevisiae; downregulated by Efg1p; member of a family of telomere-proximal genes; transcription is positively regulated by Tbf1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	11648	11995	-	orf19.6110	11648	11995	1	11995	11648	11995	11648		orf19.13529|IPF21110.1|IPF10780.2|Contig4-1846_0001|orf6.6231|CaO19.13529|CaO19.6110	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	12141	13744	+	orf19.6109	12141	13744	1	12141	13744	12157	13701	TUP1	orf19.13528|IPF21053.1|IPF4657.2|orf6.6232|CA3852|CaO19.6109|CaO19.13528	Transcriptional corepressor; represses filamentous growth, regulates phase switching, roles in germ tube induction, farnesol response; has C-terminal WD40 repeats; farnesol upregulated in biofilm; in repression pathways with Nrg1p, Rfg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	13763	15003	+	orf19.6105	13763	15003	2	13763|13868	13816|15003	13778	14917	MVD	orf19.13524|MVD1|IPF4647.2|IPF4652.1|Contig4-2342_0002|orf6.6236|CA3853|MVD1.3	Mevalonate diphosphate decarboxylase; functional homolog of S. cerevisiae Erg19p; possible drug target; transcriptionally regulated by carbon source, yeast-hyphal switch, growth phase, antifungals; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	14809	15761	-	orf19.6102	14809	15761	1	15761	14809	15761	14910		orf19.13521|IPF21080.1|IPF4649.1|Contig4-2342_0004|orf6.6239|CA3854|CaO19.6102|CST6|CaO19.13521|IPF4649	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	15595	17171	+	orf19.6103	15595	17171	1	15595	17171	16104	16631		orf19.13522|IPF21098.1|IPF4645.1|Contig4-2342_0005|orf6.6238|CA3855|CaO19.6103|CaO19.13522|IPF4645	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	16324	17328	-	orf19.6100	16324	17328	1	17328	16324	17328	16600		orf19.13519|CRD1|IPF21085.1|IPF4641.1|Contig4-2342_0007|orf6.6241|CA3856|CaO19.6100|CaO19.13519|IPF4641	Protein not essential for viability; similar to S. cerevisiae Crd1p, which is cardiolipin synthase; transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	17330	19131	+	orf19.6099	17330	19131	1	17330	19131	17338	18960	CCT8	orf19.13518|IPF21047.1|IPF4639.1|orf6.6242|CA3857|CaO19.6099|CaO19.13518	Essential protein similar to chaperonin complex subunit 8; involved in hyphal morphogenesis, particularly starvation-induced; production in S. cerevisiae inhibits Ras2p-mediated pathways (including pseudohyphal); CCT1 and TRP1 genes overlap [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	18732	19628	-	orf19.6096	18732	19628	1	19628	18732	19628	18948	TRP1	IPF21091.1|IPF4635.2|Contig4-2998_0001|orf6.6245|CA3858|CaO19.6096|CaO19.13515	Phosphoribosylanthranilate isomerase; enzyme of tryptophan biosynthesis; expected to be unifunctional, unlike trifunctional enzyme of some other fungi; complements E. coli trpC or S. cerevisiae trp1 mutant; CCT1 and TRP1 genes overlap [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	19615	22020	-	orf19.6094	19615	22020	1	22020	19615	21714	19615		orf19.13513|IPF21026.1|IPF4632.2|Contig4-2998_0005|orf6.6247|CA3859|VPS53|CaO19.6094|CaO19.13513|IPF4632	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	22143	25375	+	orf19.6092	22143	25375	1	22143	25375	22270	25326	KEL1	orf19.13511|IPF21143.1|IPF4628.1|Contig4-2998_0008|orf6.6249|CA3860|CaO19.13511|KEL2|CaO19.6092	Protein containing a Kelch repeat domain, similar to S. cerevisiae Kel1p; not required for adherence to buccal epithelial cells or virulence in mouse systemic infection; null mutant colonies exhibit slightly decreased filamentation ratio [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	25327	27656	-	orf19.6091	25327	27656	1	27656	25327	27249	25381	RIM8	orf19.13510|PRR1|RIN|IPF21039.1|IPF4622.1|Contig4-2998_0009|orf6.6250|CA3861|CaO19.6091|CaO19.13510	Protein involved in the pH response pathway; required for activation of the transcription factor Rim101p and for alkaline pH-induced hyphal growth; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	28166	29497	-	orf19.6090	28166	29497	1	29497	28166	29488	28286		orf19.13509|IPF21063.1|IPF4616.2|Contig4-2998_0012|orf6.6252|CA3862|CaO19.6090|NSR1|CaO19.13509	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	29679	31570	+	orf19.6086	29679	31570	1	29679	31570	29804	31543	LEU4	orf19.13505|IPF21043.1|IPF4611.1|LEU41|Contig4-2998_0014|orf6.6255|CA3863|CaO19.6086|CaO19.13505	Putative 2-isopropylmalalate synthase; regulated by Nrg1p, Mig1p, Tup1p, Gcn4p; upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; macrophage/pseudohyphal-repressed after 16h; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	31243	31503	-	ntar_8	31243	31503	1	31503	31243					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	31822	32677	+	orf19.6085	31822	32677	1	31822	32677	31842	32444	RPL16A	orf19.13504|IPF21087.1|IPF4609.1|Contig4-2998_0015|orf6.6256|CA3864|CaO19.13504|RPL16|CaO19.6085	Protein similar to S. cerevisiae ribosomal protein Rpl16Ap; transposon mutation affects filamentous growth; genes encoding cytoplasmic ribosomal subunits are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	32680	33318	-	orf19.6084	32680	33318	1	33318	32680	33318	32680		orf19.13503|IPF21095.1|IPF4608.1|Contig4-2998_0016|orf6.6257|CA3865|CaO19.6084|CaO19.13503|IPF4608	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	33954	34446	-	orf19.6083	33954	34446	1	34446	33954	34446	34099		orf19.13502|IPF21127.1|IPF4607.1|Contig4-2998_0017|orf6.6258|CaO19.13502|CaO19.6083	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	34525	35735	-	orf19.6082	34525	35735	1	35735	34525	35679	34525		orf19.13501|IPF21065.1|IPF4606.1|Contig4-2998_0019|orf6.6259|CA3866|CaO19.13501|GSF2|CaO19.6082|IPF4606	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	37723	39612	+	orf19.6081	37723	39612	1	37723	39612	37852	39486	PHR2	orf19.13500|orf6.6260|IPF4604.2|IPF14612.3|Contig4-2998_0022|orf6.1067|CA3867|CaO19.6081	Glycosidase; role in cell wall structure; may act on beta-1,3-glucan prior to beta-1,6-glucan linkage; role in vaginal but not systemic virulence (low pH, not neutral); low pH, high iron, fluconazole induced; Rim101p-downregulated at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	40208	41898	-	orf19.6080	40208	41898	1	41898	40208	41771	40485		orf19.13499|IPF21062.1|IPF14615.1|Contig4-2160_0002|orf6.1066|CA0287|BFA1|CaO19.6080|IPF14615	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	42101	42173	-	tt(agu)6	42101	42173	1	42173	42101				tT(AGU)6.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	42606	43505	+	orf19.6079	42606	43505	1	42606	43505	42606	43505		IPF14618|IPF14618.2|Contig4-2960_0013|orf6.1065|orf6.1757|CA0286|CaO19.6079|IPF14618.1	Predicted ORF in retrotransposon Tca8 with similarity to the Gag region encoding nucleocapsid-like protein; transcription is downregulated in response to treatment with ciclopirox olamine; filament induced; regulated by Rfg1p, Tup1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	43483	43680	-	orf19.6078.1	43483	43680	1	43680	43483	43677	43483	RFC52	IPF14619.2	ORF Predicted by Annotation Working Group; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	43804	45765	+	orf19.6078	43804	45765	1	43804	45765	43804	45765	POL93	IPF17652.3|Contig4-2396_0002|Contig4-2396_0003|Contig4-2960_0011|orf6.241|orf6.1756|CA0037|CaO19.6078|IPF17652.2	Predicted ORF in retrotransposon Tca8 with similarity to the Pol region of retrotransposons encoding reverse transcriptase, protease and integrase; downregulated in response to ciclopirox olamine; induced upon biofilm formation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	46149	46431	+	ntar_9	46149	46431	1	46149	46431					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	46564	48414	+	orf19.6077	46564	48414	1	46564	48414	46804	48360		orf19.13498|IPF8369.2|IPF27822.1|Contig4-2396_0004|orf6.7621|CA4936|CaO19.13498|CaO19.6077|IPF8369	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	48471	49335	+	orf19.6076	48471	49335	1	48471	49335	48514	49299		orf19.13497|IPF21082.1|IPF8370.1|Contig4-2396_0005|orf6.7620|CA4935|CaO19.6076|VPS29|CaO19.13497	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	49152	49890	-	orf19.6075	49152	49890	1	49890	49152	49844	49296		orf19.13496|IPF21103.1|IPF8371.1|Contig4-2396_0006|orf6.7619|CA4934|CaO19.13496|CDC36|CaO19.6075	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	49969	51091	+	orf19.6074	49969	51091	1	49969	51091	49998	50744	HBR1	orf19.13495|IPF21079.1|IPF8372.1|orf6.7618|CA4933|FAP7|CaO19.6074|CaO19.13495|IPF8372	Essential protein involved in regulation of MTL gene expression; hemoglobin-regulated inhibitor of white-opaque switching, which may affect survival in host; activator of MTLalpha1 and MTLalpha2; transcription is activated by hemoglobin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	50735	51759	-	orf19.6073	50735	51759	1	51759	50735	51682	50807	HMX1	orf19.13494|orf6.7617|YLR205C|IPF21077.1|IPF8374.1|Contig4-2523_0009|CA4932|CaO19.13494|CaO19.6073|IPF8374	Heme oxygenase; acts in utilization of hemin iron; gene transcriptionally activated by heat, low iron, or hemin; negatively regulated by Efg1p; expression greater in low iron; upregulated by Rim101p at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	53100	55389	+	orf19.6072	53100	55389	1	53100	55389	53100	54443		orf19.13493|IPF21058.1|IPF8378.2|Contig4-2523_0007|orf6.7616|CA4931|CaO19.6072|CaO19.13493|IPF8378	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	53819	54169	-	ntar_10	53819	54169	1	54169	53819	54169	53891			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	54667	57099	-	orf19.6071	54667	57099	1	57099	54667	57075	54838		orf19.13492|IPF21019.1|IPF8381.2|Contig4-2523_0004|Contig4-2523_0005|orf6.7615|CA4930|MDM20|CaO19.6071|CaO19.13492|IPF8381	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	57822	58215	+	ntar_11	57822	58215	1	57822	58215					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	59271	62570	+	orf19.6070	59271	62570	1	59271	62570	59350	62553	ENA2	orf19.13491|orf6.7614|ENA22|IPF21137.1|IPF1398.2|Contig4-2977_0027|Contig4-2977_0028|CA4929|CaO19.6070|CaO19.13491	Protein described as sodium transporter; transcription is upregulated in response to ciclopirox olamine; alkaline upregulated by Rim101p; repressed upon high-level peroxide stress; upregulated in oral candidiasis clinical isolates [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	63101	64635	+	orf19.6068	63101	64635	1	63101	64635	63203	64351	SVF1	orf19.13489|IPF21067.1|IPF1399.2|Contig4-2977_0025|orf6.7612|CA4928|CaO19.13489|CaO19.6068|IPF1399	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-induced; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	64593	66481	-	orf19.6066	64593	66481	1	66481	64593	66325	64697		orf19.13487|IPF21050.1|IPF1401.2|Contig4-2977_0023|orf6.7610|CA4927|CaO19.13487|CaO19.6066|IPF1401	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	67814	68859	+	orf19.6065	67814	68859	1	67814	68859	67844	68815		orf19.13486|orf6.7609|IPF21071.1|IPF1404.1|Contig4-2977_0018|CA4926|CaO19.13486|CaO19.6065|IPF1404	Gene transcription regulated by Mig1p and Tup1p; amphotericin B, caspofungin repressed; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	69149	70919	+	orf19.6064	69149	70919	1	69149	70919	69227	70903		orf19.13485|IPF18155.2|IPF1408.1|Contig4-2977_0013|Contig4-2977_0014|orf6.7608|CA4925|CaO19.13485|ATG18|CaO19.6064|IPF1408	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	71042	72755	+	orf19.6063	71042	72755	2	71042|71159	71081|72755	71069	72582	UBP6	orf19.13484|IPF21056.1|IPF1412.1|Contig4-2977_0011|orf6.7607|UBP6.3f|CA4924|CaO19.13484|CaO19.6063|UBP6.3	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	72580	73356	-	orf19.6062.3	72580	73356	2	73356|73092	73183|72580	73284	72742		IPF21126.1|IPF1413.1|Contig4-2977_0010|CA4923|IPF1413.3f|IPF1413.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	73506	74022	+	orf19.6062	73506	74022	1	73506	74022	73581	73901		orf19.13483|IPF21130.1|IPF1415.1|Contig4-2977_0005|orf6.7606|CA4922|CaO19.13483|CaO19.6062|IPF1415	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	73934	75420	-	orf19.6061	73934	75420	1	75420	73934	75382	74057		orf19.13482|IPF21059.1|IPF1416.1|Contig4-2977_0004|orf6.7605|CA4921|FMP30|CaO19.13482|CaO19.6061|IPF1416	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	75444	77854	-	orf19.6060	75444	77854	1	77854	75444	77829	75574	GCN20	orf19.13481|IPF21021.1|IPF1420.1|Contig4-2977_0003|orf6.7604|CA4920|CaO19.6060|CaO19.13481	YEF3-subfamily ABC family protein, predicted not to be a transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	77931	78445	-	orf19.6059	77931	78445	1	78445	77931	78368	78009	TTR1	orf19.13480|IPF21120.1|IPF1421.1|Contig4-2977_0001|orf6.7603|CA4919|GRX2|CaO19.13480|TTR11|CaO19.6059	Putative glutaredoxin; described as a glutathione reductase; upregulated in the presence of human neutrophils, and upon benomyl treatment; alkaline downregulated; regulated by Gcn2p and Gcn4p; required for virulence in mouse model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	78567	79675	-	orf19.6058	78567	79675	1	79675	78567	79670	78642	GLO1	orf19.13479|IPF21068.1|IPF1422.1|orf6.7602|CA4918|CaO19.13479|CaO19.6058	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	79990	81168	+	orf19.6057	79990	81168	1	79990	81168	80125	81054		orf19.13478|IPF21074.1|IPF1424.1|Contig4-3053_0035|orf6.7601|CA4917|CaO19.6057|ECM31|CaO19.13478	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	81203	82050	+	orf19.6056	81203	82050	1	81203	82050	81234	81902		orf19.13477|IPF21093.1|IPF1425.1|Contig4-3053_0032|orf6.7600|CA4916|CaO19.13477|CaO19.6056|IPF1425	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	82003	84730	-	orf19.6055	82003	84730	1	84730	82003	84559	82118		orf19.13476|IPF21013.1|IPF1427.1|Contig4-3053_0030|orf6.7599|CA4915|BUL3|CaO19.13476|CaO19.6055|IPF1427	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	85022	87395	-	orf19.6054	85022	87395	1	87395	85022	87249	85081		orf19.13475|IPF21022.1|IPF1428.2|Contig4-3053_0028|orf6.7598|CA4914|CaO19.6054|BUL2|CaO19.13475|IPF1428	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	87773	89905	+	orf19.6053	87773	89905	1	87773	89905	87901	89811	CIS2	orf19.13474|IPF21037.1|IPF1431.1|Contig4-3053_0023|orf6.7597|CA4913|CaO19.6053|ECM38|CaO19.13474	Putative role in regulation of biogenesis of the cell wall; upregulated in biofilm; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	90059	91373	+	orf19.6052	90059	91373	1	90059	91373	90100	91272	CNS1	orf19.13473|IPF21066.1|IPF1432.1|Contig4-3053_0020|orf6.7596|CA4912|CaO19.13473|CaO19.6052	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to radicicol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	90779	93779	-	orf19.6049	90779	93779	1	93779	90779	93695	91311		orf19.13470|IPF21018.1|IPF1435.1|Contig4-3053_0017|orf6.7593|CA4911|CaO19.13470|CaO19.6049|IPF1435	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	93903	94925	+	orf19.6048	93903	94925	1	93903	94925	93971	94900		orf19.13469|IPF21073.1|IPF1437.1|Contig4-3053_0016|orf6.7592|CA4910|CaO19.6048|CaO19.13469|IPF1437	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	95125	96686	+	orf19.6047	95125	96686	1	95125	96686	95215	96495	TUF1	orf19.13468|IPF21060.1|IPF1439.1|Contig4-3053_0014|orf6.7591|CA4909|CaO19.6047|CaO19.13468	Putative translation elongation factor; macrophage/pseudohyphal-induced; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	96757	101461	+	orf19.6046	96757	101461	1	96757	101461	96817	101424	APC1	orf19.13467|IPF21111.1|IPF1445.2|Contig4-3053_0013|orf6.7590|CA4908|CaO19.6046|CaO19.13467|IPF1445	Predicted ORF in Assemblies 19, 20 and 21; essential for growth; periodic mRNA expression, peak at cell-cycle S/G2 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	101691	103644	+	orf19.6045	101691	103644	1	101691	103644	101752	103524		orf19.13466|IPF21041.1|IPF1448.1|Contig4-3053_0005|orf6.7589|CA4907|CaO19.6045|PSD1|CaO19.13466	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	103756	104981	+	orf19.6044	103756	104981	1	103756	104981	103869	104810	MOB2	orf19.13465|IPF21075.1|IPF1449.1|Contig4-3053_0003|orf6.7588|CA4906|CaO19.13465|CaO19.6044	Mob1/phocein domain protein of RAM signaling network of cell wall integrity; role in cell separation, cortical actin polarization; required for hyphal growth; interacts with Cbk1p; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	104840	105092	-	ntar_12	104840	105092	1	105092	104840					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	105159	107109	+	orf19.6043	105159	107109	1	105159	107109	105180	106925		orf19.13464|IPF21048.1|IPF1451.1|Contig4-3053_0001|orf6.7587|CA4905|CaO19.13464|CaO19.6043|DLD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	106976	111148	-	orf19.6041	106976	111148	1	111148	106976	111028	107126	RPO41	orf19.13462|IPF21121.1|IPF1453.2|Contig4-3053_0037|orf6.7585|CA4904|CaO19.6041|CaO19.13462	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	111335	112500	-	orf19.6040	111335	112500	1	112500	111335	112252	111572	SNF7	orf19.13461|IPF21090.1|IPF1454.1|Contig4-2972_0022|orf6.7584|VPS32|CA4903|CaO19.13461|CaO19.6040	Protein involved in echinocandin, azole sensitivity; role in proteolytic activation of Rim101p; separable roles in RIM101 pathway and in transport from MVB to vacuole; similar to S. cerevisiae Snf7p component of ESCRT III complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	112753	113872	-	orf19.6039	112753	113872	1	113872	112753	113802	112789		orf19.13460|IPF21070.1|IPF1455.1|Contig4-2972_0019|orf6.7583|CA4902|CaO19.6039|SED5|CaO19.13460	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	114006	115966	-	orf19.6038	114006	115966	1	115966	114006	115879	114128		UGA32|orf19.13459|IPF21042.1|IPF1457.1|Contig4-2972_0013|Contig4-2972_0017|orf6.7582|CA4901|CaO19.6038|CaO19.13459|IPF1457	Predicted zinc-finger protein of unknown function; has similarity to S. cerevisiae Uga3p, which is a transcription factor involved in the regulation of gamma-aminobutyrate metabolism genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	114049	114377	+	ntar_13	114049	114377	1	114049	114377	114049	114270			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	117088	119522	+	orf19.6037	117088	119522	1	117088	119522	117320	119443	ASM3	orf19.13458|orf6.7581|IPF21027.1|IPF1459.1|Contig4-2972_0011|CA4900|IFP2|CaO19.13458|CaO19.6037	Putative secreted acid sphingomyelin phosphodiesterase; induced upon biofilm formation; possible Kex2p substrate; increased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	119713	122873	+	orf19.6036	119713	122873	1	119713	122873	119768	122809	RIC1	orf19.13457|IPF21148.1|IPF1460.1|Contig4-2972_0009|orf6.7580|CA4899|CaO19.6036|CaO19.13457|IPF1460	Protein not essential for viability; similar to S. cerevisiae Ric1p, which is a guanyl-nucleotide exchange factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	122901	123591	+	orf19.6035	122901	123591	1	122901	123591	123067	123432		orf19.13456|IPF21108.1|IPF1461.1|Contig4-2972_0006|orf6.7579|CA4898|CaO19.13456|CaO19.6035|IPF1461	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	123634	125678	-	orf19.6034	123634	125678	3	125678|125370|125170	125586|125335|123634	125597	123869	TUB2	orf19.13455|IPF21061.1|IPF1463.1|Contig4-2972_0005|orf6.7578|CA4897|TUB2.3	Beta-tubulin; functional homolog of ScTub2p; hyphal-induced; fluconazole-induced; gene has two introns; overproduction causes inviability in S. cerevisiae; slow growth, increased white-to opaque switching in ectopic expression strains [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=F]
Ca21chr1	126521	126779	+	tp(ugg)3	126521	126779	2	126521|126577	126556|126779	126540	126691		tP(UGG)3.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	126663	129074	-	orf19.6033	126663	129074	1	129074	126663	128619	126790	CMP1	orf19.13454|CNA|IPF18159.2|IPF1465.2|Contig4-2972_0002|orf6.3161|orf6.7577|CA1587|CNA1|CaO19.6033|CMP2	Catalytic subunit of calcineurin (Ca[2+]-calmodulin-regulated S/T protein phosphatase); required for wild-type virulence, resistance to high pH, Na(+), Li(+), Mn(2+), and fluconazole tolerance; micafungin is fungicidal to null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	129157	131047	-	orf19.6032	129157	131047	1	131047	129157	130680	129259	SPE1	orf19.13453|ODC|ODC1|IPF21057.1|IPF1466.2|Contig4-2972_0001|orf6.3160|CA1586|CaO19.13453|CaO19.6032	Ornithine decarboxylase; enzyme of polyamine biosynthesis; not essential for viability; functionally complements polyamine auxotrophy of S. cerevisiae spe1 mutant; upregulated in biofilm; downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	131235	134123	-	orf19.6031	131235	134123	1	134123	131235	133937	131412		orf19.13452|IPF21016.1|IPF15825.2|Contig4-3066_0007|orf6.3159|CA1585|CaO19.13452|VPS27|CaO19.6031	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	134226	135337	+	orf19.6030	134226	135337	1	134226	135337	134256	134915		orf19.13451|IPF21086.1|IPF15824.2|orf6.3158|CA1584|CaO19.6030|CaO19.13451|IPF15824	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	135327	136867	-	orf19.6029	135327	136867	1	136867	135327	136438	135656	ROT1	orf19.13450|IPF21084.1|IPF18655.1|Contig4-2871_0003|orf6.3157|CA1583|CaO19.6029	Similar to S. cerevisiae Rot1p, which is involved in cell wall 1,6-beta-glucan biosynthesis; has predicted transmembrane region [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	137537	137940	+	ntar_14	137537	137940	1	137537	137940					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	138517	139742	+	ntar_15	138517	139742	1	138517	139742					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	138579	140936	-	orf19.6028	138579	140936	1	140936	138579	140936	138579	HGC1	orf19.13449|IPF7912.2|IPF15332.2|CLN21|Contig4-2280_0001|orf6.1969|orf6.3156|CA1582|CLN3|CaO19.6028	Hypha-specific G1 cyclin-related protein involved in regulation of hyphal morphogenesis; Cdc28p-Hgc1p maintains Cdc11p S394 phosphorylation during hyphal growth; required for virulence in mouse model; regulated by Nrg1p, Tup1p, farnesol [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	147577	148496	-	ntar_16	147577	148496	1	148496	147577					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	150512	152082	+	orf19.6027	150512	152082	1	150512	152082	150614	151714		orf19.13448|IPF18867.2|IPF7903.2|Contig4-2833_0014|orf6.1968|orf6.3931|CA2155|CaO19.6027|IPF7903	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	154292	155353	-	orf19.6026	154292	155353	1	155353	154292	155291	154638	ERG2	orf19.13447|IPF21092.1|IPF7901.2|Contig4-2833_0009|orf6.3930|CA2154|CaO19.6026|CaO19.13447	C-8 sterol isomerase; enzyme of ergosterol biosynthesis pathway; converts fecosterol to episterol; mutant is hypersensitive to multiple drugs; ketoconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	155448	156497	+	orf19.6025	155448	156497	1	155448	156497	155448	156329		orf19.13446|IPF21076.1|IPF7900.1|Contig4-2833_0008|orf6.3929|CA2153|CaO19.13446|CaO19.6025|IPF7900	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	156648	158089	+	orf19.6024	156648	158089	1	156648	158089	156648	157694		orf19.13445|IPF21069.1|IPF7899.1|Contig4-2833_0005|orf6.3928|CA2152|CaO19.6024|CaO19.13445|IPF7899	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	158685	160659	+	orf19.6023	158685	160659	1	158685	160659	158729	160528		orf19.13444|IPF21040.1|IPF7898.2|Contig4-2833_0002|orf6.3927|CA2151|MTE4|CaO19.6023|CaO19.13444|ERC2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	160632	162970	-	orf19.6022	160632	162970	1	162970	160632	162676	160946		orf19.13443|IPF21044.1|IPF19940.1|Contig4-2810_0001|Contig4-2810_0002|Contig4-2833_0019|orf6.3926|CA2150|CaO19.13443|CaO19.6022|IPF19940	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	166952	167956	+	orf19.6021	166952	167956	1	166952	167956	167084	167830	IHD2	orf19.13442|orf6.3925|IPF21083.1|IPF10761.1|Contig4-2810_0012|CA2149|CaO19.6021|CaO19.13442|IPF10761	Transcriptionally regulated by iron and by yeast-hyphal switching; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	168387	169654	+	orf19.6020	168387	169654	1	168387	169654	168540	169541		orf19.13441|IPF21072.1|IPF10762.1|Contig4-2810_0014|orf6.3924|CA2148|ATG3|CaO19.6020|AUT1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	169009	169878	-	ntar_17	169009	169878	1	169878	169009					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	169978	172393	+	orf19.6018	169978	172393	1	169978	172393	170165	172261	LRO1	orf19.13439|IPF19448.2|IPF10764.2|IPF18532.1|Contig4-2810_0017|orf6.3922|orf6.91|orf6.3923|CA6302|CA0012|orf19.6019|IPF19448.3f	Predicted ORF in Assemblies 19, 20 and 21; nonessential; similar to S. cerevisiae Lro1p acyltransferase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	174466	176091	+	orf19.6017	174466	176091	1	174466	176091	174466	176091		orf19.13438|IPF21049.1|IPF13839.1|Contig4-2810_0020|orf6.1429|CA0477|MCM1|CaO19.6017|CaO19.13438|IPF13839	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	176291	178544	+	orf19.6016	176291	178544	1	176291	178544	176332	178482		orf19.13437|IPF13843.2|IPF5084.2|Contig4-2810_0023|orf6.1430|orf6.5096|CA0478|CaO19.6016|YAE8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	178653	179423	+	orf19.6014	178653	179423	1	178653	179423	178697	179314	RRS1	orf19.13435|IPF13845.2|IPF5085.1|orf6.1432|orf6.5094|CA2992|CaO19.6014	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	179760	180965	+	orf19.6013	179760	180965	4	179760|179953|180136|180652	179877|180048|180565|180965	179830	180836		orf19.13434|IPF21106.1|IPF5088.1|orf6.5093|CA2991|IPF5088|IPF5088.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	181338	185381	+	orf19.6012	181338	185381	1	181338	185381	181410	185246		orf19.13433|IPF21122.1|IPF5092.2|orf6.5092|CA2990|CaO19.13433|CaO19.6012|IPF5092	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	185392	190232	-	orf19.6011	185392	190232	5	190232|190018|189907|189700|189177	190094|189972|189786|189357|185392	190152	185514	SIN3	orf19.13432|orf6.5091|IPF21124.1|IPF5096.2|Contig4-2910_0015|orf19.6010.3|CA2988|CA2989|SIN3.exon3|SIN3.exon2|IPF5097.2	Protein similar to S. cerevisiae Sin3p (transcriptional corepressor involved in histone deacetylase recruitment); has paired amphipathic helix PAH1 domain; interacts with ScOpi1p, not CaOpi1p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	190611	191471	+	orf19.6010.1	190611	191471	2	190611|190841	190756|191471	190704	191162	RPB11	IPF21134.1|IPF5100.2|Contig4-2910_0010|CA2987|RPB11.3f|RPB11.3	ORF Predicted by Annotation Working Group; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	191231	193726	-	orf19.6010	191231	193726	1	193726	191231	193411	191450	CDC5	orf19.13431|IPF21034.1|IPF5102.1|Contig4-2910_0009|orf6.5090|CA2986|CaO19.13431|CaO19.6010	Polo-like kinase; probably essential for viability; depletion causes defects in spindle elongation and causes Cdc35p-dependent filamentation; member of conserved Mcm1p regulon; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	194192	198013	-	orf19.6009	194192	198013	1	198013	194192	197804	194682	SET1	orf19.13430|IPF21139.1|IPF5105.1|Contig4-2910_0006|Contig4-2910_0007|orf6.5089|CA2985|CaO19.6009|CaO19.13430	Lysine histone methyltransferase; methylates K4 of histone H3; has a role in regulation of white-opaque switching, epithelial cell adhesion, agar-embedded filamentation, and virulence in mouse; unique N-terminus is immunogenic in human [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	198123	198861	+	orf19.6008.3	198123	198861	2	198123|198358	198290|198861	198227	198752		IPF21109.1|IPF5107.1|Contig4-2910_0004|CA6228|IPF5107	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	198878	199339	+	orf19.6008.4	198878	199339	1	198878	199339	198957	199226			Predicted ORF in Assembly 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	199234	202318	-	orf19.3288	199234	202318	1	202318	199234	202255	199322	NMA111	orf19.10798|IPF23911.1|IPF12606.1|orf6.1778|CA0693|orf19.6008.1|orf19.3288.1|IPF12606.5eoc	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene; downregulated in core stress response; fungal-specific (no human or murine homolog); merged with orf19.3288.1 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	202454	203679	-	orf19.3289	202454	203679	1	203679	202454	203629	202538		orf19.10799|IPF23943.1|IPF12603.1|Contig4-2295_0001|orf6.1779|CA0694|CaO19.10799|ORC6|CaO19.3289|IPF12603	Phosphorylated protein of unknown function; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	203877	204529	+	orf19.3290	203877	204529	1	203877	204529	203952	204422		orf19.10800|IPF23959.1|IPF12601.1|Contig4-2295_0003|orf6.1780|CA0695|CaO19.3290|CaO19.10800|IPF12601	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	204992	205064	+	ta(agc)4	204992	205064	1	204992	205064				tA(AGC)4.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	205101	206414	+	orf19.3291	205101	206414	1	205101	206414	205272	206291	HMT1	orf19.10801|IPF6232.3|IPF12599.2|Contig4-2295_0005|orf6.1781|orf6.7186|CA0696|RMT1|PRMT1|CaO19.3291	Major type I protein arginine methyltransferases (PRMT) involved in asymmetric dimethylation of arginine residues; involved in nuclear export of Npl3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	206456	206953	+	orf19.3292	206456	206953	1	206456	206953	206484	206927		orf19.10802|IPF6231.2|IPF12596.2|Contig4-2295_0006|Contig4-2918_0002|orf6.1782|orf6.7187|CA4602|CaO19.3292|IPF6231	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	206785	207971	-	orf19.3293	206785	207971	1	207971	206785	207862	206924		orf19.10803|IPF6230.2|IPF28806.1|Contig4-2918_0003|orf6.7188|CA4603|CaO19.3293|TSC13|IPF6230	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	208265	208980	+	orf19.3294	208265	208980	1	208265	208980	208292	208747	MBF1	orf19.10804|IPF23957.1|IPF6228.2|Contig4-2918_0005|orf6.7189|CA4604|CaO19.10804|CaO19.3294	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	208844	210616	-	orf19.3295	208844	210616	1	210616	208844	210511	209087		orf19.10805|IPF23936.1|IPF6226.2|Contig4-2918_0006|orf6.7190|CA4605|CaO19.3295|CaO19.10805|IPF6226	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	210807	212514	+	orf19.3296	210807	212514	1	210807	212514	210881	212386		orf19.10806|IPF23935.1|IPF6224.1|Contig4-2918_0008|orf6.7191|CA4606|CaO19.10806|CaO19.3296|IPF6224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	212268	212907	-	orf19.3297	212268	212907	1	212907	212268	212756	212448		orf19.10807|IPF23978.1|IPF6223.1|Contig4-2918_0009|orf6.7192|CA4607|RSM27|CaO19.10807|CaO19.3297|IPF6223	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	213520	220485	+	orf19.3298	213520	220485	1	213520	220485	213644	220408	CCH1	orf19.10808|IPF23954.1|IPF6222.2|Contig4-2918_0012|orf6.7193|CA4608|CaO19.3298|CaO19.10808	Putative voltage-gated Ca2+ channel of the high affinity calcium uptake system; roles in thigmotropism, establishment of galvanotropism; transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	220489	222102	-	orf19.3300	220489	222102	1	222102	220489	222077	220548	ZPR1	orf19.10810|IPF23933.1|IPF6215.2|Contig4-2918_0013|orf6.7195|CA4609|CaO19.3300|CaO19.10810	Protein with putative zinc finger; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); upregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	224368	227069	+	orf19.3301	224368	227069	1	224368	227069	224676	226883		orf19.10811|IPF23919.1|IPF19802.1|Contig4-2098_0005|orf6.7196|CA4610|CaO19.10811|MET30|CaO19.3301|IPF19802	Predicted ORF in Assemblies 19, 20 and 21; induced by heavy metal (cadmium) stress; Hog1p-induced; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	227355	230364	-	orf19.3302	227355	230364	1	230364	227355	229788	227686		orf19.10812|IPF23920.1|IPF10727.1|Contig4-2491_0004|orf6.7197|CA4611|CaO19.3302|CaO19.10812|IPF10727	Predicted ORF in Assemblies 19, 20 and 21; transcription downregulated upon yeast-hyphal switch; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	230682	231503	-	ntar_18	230682	231503	1	231503	230682	231453	231304			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	232533	233329	+	ntar_19	232533	233329	1	232533	233329	233180	233329			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	232779	234953	-	orf19.3303	232779	234953	1	234953	232779	234943	232874		orf19.10813|IPF23921.1|IPF10724.2|Contig4-2491_0009|orf6.7198|CA4612|CaO19.10813|PPM2|CaO19.3303	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	233394	233526	+	ntar_20	233394	233526	1	233394	233526					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	235009	235936	-	orf19.3304	235009	235936	1	235936	235009	235898	235086		orf19.10814|IPF23947.1|IPF7950.2|Contig4-2860_0018|orf6.7199|CA4613|CaO19.10814|RRP40|CaO19.3304|IPF7950	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	236066	238423	-	orf19.3305	236066	238423	1	238423	236066	238310	236094		ZCF17|orf19.10815|IPF23918.1|IPF7952.2|Contig4-2860_0016|orf6.7200|CA4614|CaO19.3305|CaO19.10815|IPF7952	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	239100	240923	-	orf19.3306	239100	240923	1	240923	239100	240923	239100		orf19.10816|IPF23928.1|IPF7955.2|Contig4-2860_0012|orf6.7201|CA4615|HOP1|CaO19.10816|CaO19.3306|IPF7955	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	239145	240704	+	ntar_21	239145	240704	1	239145	240704	240095	240280			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	240982	242562	-	orf19.3307	240982	242562	1	242562	240982	242513	241122		orf19.10817|IPF23937.1|IPF5761.2|Contig4-2978_0001|orf6.7202|CA4616|CaO19.3307|CaO19.10817|IPF5761	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	242658	244764	+	orf19.3308	242658	244764	1	242658	244764	242750	244672		STB5|orf19.10818|IPF23925.1|IPF5760.2|Contig4-2978_0002|Contig4-2978_0004|orf6.7203|CA4617|CaO19.3308|CaO19.10818	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Stb5p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	244688	244993	-	ntar_22	244688	244993	1	244993	244688					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	245182	246628	+	orf19.3309	245182	246628	1	245182	246628	245215	246462		orf19.10819|IPF23939.1|IPF5757.1|Contig4-2978_0005|orf6.7204|CA4618|CaO19.10819|CaO19.3309|IPF5757	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	246608	247489	-	orf19.3310	246608	247489	1	247489	246608	247422	246670		orf19.10820|IPF23950.1|IPF5756.1|Contig4-2978_0006|orf6.7205|CA4619|CaO19.3310|CaO19.10820|IPF5756	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	247688	248114	-	ntar_23	247688	248114	1	248114	247688	247828	247688			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	247725	248250	+	ntar_24	247725	248250	1	247725	248250	247725	248009			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	248744	249968	+	orf19.3311	248744	249968	1	248744	249968	248825	249874	IFD3	orf19.10821|IPF23944.1|IPF5754.1|Contig4-2978_0008|orf6.7206|CA4620|CaO19.3311|CaO19.10821	Transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	250073	252106	+	orf19.3312	250073	252106	1	250073	252106	250112	251986		orf19.10822|IPF23924.1|IPF5753.1|Contig4-2978_0009|orf6.7207|CA4621|CaO19.10822|FMP29|CaO19.3312|IPF5753	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	251496	252610	-	orf19.3314	251496	252610	1	252610	251496	252497	252045		orf19.10824|IPF23965.1|IPF5751.1|Contig4-2978_0010|orf6.7209|CA4622|TRS20|CaO19.10824|CaO19.3314|IPF5751	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	252942	254614	+	orf19.3315	252942	254614	1	252942	254614	253167	254450	CTA9	orf19.10825|IPF23940.1|IPF5750.2|Contig4-2978_0011|orf6.7210|CA4623|CaO19.10825|CaO19.3315	Protein required for normal filamentous growth; induced during the mating process; mRNA binds to She3p; activates transcription in 1-hybrid assay in S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	254243	255031	-	orf19.3317	254243	255031	1	255031	254243	254974	254627		orf19.10827|IPF18196.2|IPF5748.2|Contig4-2978_0013|orf6.7212|SRB6|CaO19.3317|CaO19.10827	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	255141	257653	-	orf19.3318	255141	257653	1	257653	255141	257452	255179		orf19.10828|IPF23917.1|IPF5747.2|Contig4-2978_0015|orf6.7213|CA4624|CaO19.3318|CaO19.10828|IPF5747	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	257875	258965	+	orf19.3319	257875	258965	1	257875	258965	257930	258913		orf19.10829|IPF23946.1|IPF5742.1|Contig4-2978_0016|orf6.7214|CA4625|CaO19.10829|TXL1|CaO19.3319|IPF5742	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	258474	258871	-	ntar_25	258474	258871	1	258871	258474					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	259001	259354	+	orf19.3320	259001	259354	1	259001	259354	259001	259354			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	259396	261346	+	orf19.3321	259396	261346	1	259396	261346	259656	261182		orf19.10831|IPF5739.1|IPF28804.1|Contig4-2978_0018|orf6.5033|orf6.7216|CA4626|CaO19.3321|MRS7	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	261307	261890	-	orf19.3322	261307	261890	1	261890	261307	261847	261368	DUT1	orf19.10832|IPF5736.1|IPF8317.2|Contig4-2978_0019|orf6.5032|orf6.7217|CA4627|CaO19.3322	dUTP pyrophosphatase; converts dUTP to dUMP and pyrophosphate; cell-cycle regulated if expressed in S. cerevisiae; upstream MluI and SCB transcription regulatory elements; induced by 17-beta-estradiol, ethynyl estradiol, macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	262049	263108	-	orf19.3323	262049	263108	1	263108	262049	263092	262226		orf19.10833|IPF23949.1|IPF8318.2|Contig4-2976_0021|orf6.5031|CA2940|CaO19.10833|CaO19.3323|IPF8318	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	263281	264720	-	orf19.3324	263281	264720	1	264720	263281	264681	263488	TIF	orf19.10834|IPF23942.1|IPF8319.1|TIF1|Contig4-2976_0019|orf6.5030|CA2939|CaO19.3324|CaO19.10834	Protein similar to S. cerevisiae translation initiation factor; upregulated in highly virulent strain compared to less virulent strain; antigenic in human; flucytosine induced; translation-related genes are downregulated upon phagocytosis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	265079	267819	-	orf19.3325	265079	267819	1	267819	265079	267474	265492		orf19.10835|IPF8321|IPF23923.1|IPF8321.2|Contig4-2976_0016|Contig4-2976_0018|orf6.5029|CA2938|GLG21|CaO19.3325|CaO19.10835	Protein described as glycogen synthesis initiator; regulated by Efg1p and Efh1p; Hog1p-downregulated; shows colony morphology-related gene regulation by Ssn6p; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	269012	270103	-	orf19.3325.3	269012	270103	2	270103|269621	269999|269012	270022	269382	RPS21B	IPF23913.1|IPF8325.2|Contig4-2976_0010|CA2937|RPS21B.3f|RPS21B.3	Protein described as similar to ribosomal protein S21; regulated by Nrg1p, Tup1p; shows colony morphology-related gene regulation by Ssn6p; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	270279	272006	-	orf19.3327	270279	272006	1	272006	270279	271985	270330	TRM2	orf19.10837|IPF23931.1|IPF8326.2|Contig4-2976_0009|orf6.5027|CA2936|CaO19.10837|TRM21|CaO19.3327|IPF8326	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	272260	274556	-	orf19.3328	272260	274556	1	274556	272260	274208	272385		orf19.10838|IPF23929.1|IPF11521.2|Contig4-2976_0005|orf6.5026|CA2935|CaO19.10838|HOT1|CaO19.3328|IPF11521	Predicted ORF in Assemblies 19, 20 and 21; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	275355	277078	-	orf19.3329	275355	277078	1	277078	275355	276963	275488		orf19.10839|IPF23934.1|IPF11515.2|Contig4-2976_0004|orf6.5025|CA2934|CaO19.3329|LCB3|CaO19.10839|IPF11515	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	278176	279437	-	orf19.3330	278176	279437	1	279437	278176	279273	278233	CRL1	orf19.10840|RHO4|IPF23945.1|IPF11512.1|Contig4-2976_0002|orf6.5024|CA2933|CaO19.3330|CaO19.10840|IPF11512	Predicted GTPase of RHO family; CAAX motif geranylgeranylated; expression in S. cerevisiae causes dominant-negative inhibition of pheromone response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	280372	280907	-	orf19.3330.3	280372	280907	1	280907	280372	280830	280432	POX18	CA1711|IPF11509.2|Contig4-2339_0004|CA6274|orf19.10841|POX18.3f	Protein not essential for viability; similar to Candida maltosa Pox18p, which is a peroxisomal protein; Assembly 21 sequence was updated based on comparative genome analysis and new sequence data, and allelic orf19.10841 was reinstated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	281050	281340	-	ntar_26	281050	281340	1	281340	281050	281340	281101			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	281622	281905	-	ntar_27	281622	281905	1	281905	281622					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	282250	284392	+	orf19.3331	282250	284392	1	282250	284392	282448	284148	ABC1	orf19.10842|IPF14939.2|IPF17140.3|Contig4-2339_0002|orf6.3338|orf6.5023|CA1712|CaO19.3331	Protein described as ubiquinol-cytochrome-c reductase; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	284604	287793	+	orf19.3332	284604	287793	1	284604	287793	284652	287630		orf19.10843|IPF23984.1|IPF19743.1|Contig4-2144_0003|orf6.3339|CA1713|CaO19.10843|CaO19.3332|IPF19743	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	287955	289616	+	orf19.3333	287955	289616	1	287955	289616	288046	289341		orf19.10844|IPF23938.1|IPF14410.1|Contig4-2144_0005|orf6.3340|CA1714|CaO19.10844|NAB2|CaO19.3333	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	289566	290577	-	orf19.3334	289566	290577	1	290577	289566	290461	289712	RPS21	orf19.10845|IPF23952.1|IPF14407.1|RPS2|Contig4-2144_0006|orf6.3341|CA1715|CaO19.3334|CaO19.10845	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	290832	291020	-	ntar_28	290832	291020	1	291020	290832					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	291773	292640	+	orf19.3335	291773	292640	1	291773	292640	291860	292462		orf19.10846|IPF23955.1|IPF17237.2|Contig4-1941_0003|orf6.3342|CA1716|CaO19.3335|CaO19.10846|IPF17237	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	296059	296517	+	orf19.3336	296059	296517	1	296059	296517	296059	296517			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	299558	300385	+	orf19.3337	299558	300385	1	299558	300385	299579	300385		orf19.10847|IPF17935.2|orf6.188|CA6275|CaO19.3337|IPF7374.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	300397	301825	+	orf19.3338	300397	301825	1	300397	301825	300397	301779		IPF7374.2|IPF19251.2|Contig4-2235_0002|orf6.494|orf6.4730|CA2718|CaO19.3338|IPF7374.3f|IPF7374	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	305066	306082	-	orf19.3340	305066	306082	1	306082	305066	306028	305324	SOD2	orf19.10848|IPF23953.1|IPF7368.2|Contig4-2785_0004|orf6.4731|CA2719|CaO19.10848|CaO19.3340	Mitochondrial Mn-containing superoxide dismutase; protection against oxidative stress; active as homotetramer; N-terminal 34 amino acids removed upon mitochondrial import; H2O2-induced via Cap1p; alkaline downregulated, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	306554	308594	-	orf19.3341	306554	308594	1	308594	306554	308564	306633		orf19.10849|IPF23922.1|IPF7366.2|Contig4-2785_0006|orf6.4732|YDR341C|CA2720|CaO19.3341|CaO19.10849|IPF7366	Putative tRNA-Arg synthetase; essential; S. cerevisiae ortholog is essential; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	309035	311028	+	orf19.3342	309035	311028	1	309035	311028	309137	310987		orf19.10850|IPF23927.1|IPF4799.2|Contig4-2785_0009|orf6.4733|CA2721|CaO19.10850|CaO19.3342|IPF4799	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	311162	312907	+	orf19.3344	311162	312907	1	311162	312907	311215	312774	VPS17	orf19.10852|IPF23932.1|IPF4801.1|Contig4-2785_0010|orf6.4735|CA2722|CaO19.3344|CaO19.10852|IPF4801	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	313068	318007	+	orf19.3345	313068	318007	1	313068	318007	313177	317814	SIZ1	orf19.10853|IPF23962.1|IPF4805.2|Contig4-2944_0001|Contig4-2944_0002|orf6.4736|CA2723|CaO19.10853|CaO19.3345|IPF4805	Protein of unknown function; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	317870	318745	-	orf19.3347	317870	318745	1	318745	317870	318487	317966	RPB7	orf19.10855|orf6.4738|IPF4809.1|IPF18805.2|Contig4-2944_0003|CA2724|CaO19.3347	Functional homolog of S. cerevisiae Rpb7p, an essential subunit of RNA Polymerase II; enhances hyperfilamentation of an S. cerevisiae rpb4 mutant; suppresses defects of S. cerevisiae rpb4 and ess1 mutants [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	318904	319730	+	orf19.3348	318904	319730	1	318904	319730	318944	319474		orf19.10856|IPF4810.1|IPF18806.1|Contig4-2944_0004|orf6.2240|orf6.4739|CA2725|MRPL23|CaO19.3348|MRPL23A	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	319536	323471	-	orf19.3349	319536	323471	1	323471	319536	323385	319681		orf19.10857|IPF23973.1|IPF4811.2|Contig4-2944_0005|Contig4-2944_0008|orf6.2239|orf6.4740|CA0987|RPB140|CaO19.3349	Putative protein of unknown function; heterozygous null mutant exhibits resistance to parnafungin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	323630	324792	+	orf19.3350	323630	324792	1	323630	324792	323666	324547	MRP20	orf19.10858|IPF23948.1|IPF4814.2|Contig4-2944_0009|orf6.2238|CA0986|CaO19.3350|CaO19.10858|IPF4814	Protein described as component of mitochondrial ribosome; decreased expression in hyphae compared to yeast-form cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	324874	326042	-	orf19.3351	324874	326042	2	326042|325756	325935|324874	325957	324904		orf19.10859|IPF18790.2|IPF4815.2|Contig4-2944_0010|orf6.2237|CA0985|CaO19.10859|CaO19.3351|IPF4815.3f|IPF4815	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	325236	325474	+	ntar_29	325236	325474	1	325236	325474					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	326217	327581	-	orf19.3352	326217	327581	1	327581	326217	327443	326445		orf19.10860|IPF4817.1|IPF17315.2|IPF18807.1|Contig4-2944_0011|orf6.2236|orf6.2296|CA6276|IPF4817.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	327654	328131	+	ntar_30	327654	328131	1	327654	328131					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	331210	332473	+	orf19.3353	331210	332473	1	331210	332473	331372	332055		orf19.10861|IPF4820.2|IPF18808.1|IPF18809.1|Contig4-2944_0016|orf6.2235|orf6.2295|CA1022|IPF4820.5f|IPF4820	Protein described as similar to a mitochondrial complex I intermediate-associated protein; fluconazole-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	331416	332205	-	ntar_31	331416	332205	1	332205	331416	332193	332050			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	332693	334297	+	orf19.3354	332693	334297	2	332693|333322	332752|334297	332739	334096		orf19.10862|IPF28807.1|Contig4-2331_0004|orf6.2294|CaO19.10862|RPS42|CaO19.3354	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	334442	336074	+	orf19.3355	334442	336074	1	334442	336074	334662	336044	ISN1	orf19.10863|IPF4824.1|IPF28805.1|Contig4-2331_0002|orf6.1924|orf6.2293|CA1020|CaO19.3355|IPF4824	Putative inosine 5'-monophosphate 5'-nucleotidase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	336138	336219	-	ts(uga)1	336138	336219	1	336219	336138				tS(UGA)1.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	336662	341515	-	orf19.3356	336662	341515	1	341515	336662	341515	336719	ESP1	orf19.10864|IPF23960.1|IPF14196.2|Contig4-2331_0010|Contig4-2755_0001|Contig4-2755_0003|orf6.1925|CA0789|CaO19.3356|CaO19.10864	Predicted ORF in Assemblies 19, 20 and 21; mutation confers increased sensitivity to nocodazole; periodic mRNA expression, peak at cell-cycle S/G2 phase; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	341723	342534	-	orf19.3357	341723	342534	1	342534	341723	342459	341947		orf19.10865|IPF23956.1|IPF14193.2|Contig4-2755_0005|orf6.1926|CA0790|CaO19.10865|CaO19.3357|IPF14193	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	342805	344018	-	orf19.3358	342805	344018	1	344018	342805	343920	342949	LSC1	orf19.10866|orf6.1927|IPF23941.1|IPF14191.1|Contig4-2755_0006|CA0791|CaO19.10866|CaO19.3358	Protein described as succinate-CoA ligase subunit; transcriptionally regulated by iron; expression greater in high iron; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	344908	345293	+	ntar_32	344908	345293	1	344908	345293					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	345579	348960	+	orf19.3359	345579	348960	1	345579	348960	345579	348779	ARP8	orf19.10867|IPF14479.2|IPF18872.2|Contig4-2755_0011|orf6.1928|orf6.2524|orf6.791|CA1164|CaO19.3359	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	348191	348894	-	ntar_33	348191	348894	1	348894	348191	348490	348191			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	350957	353524	+	orf19.3360	350957	353524	1	350957	353524	351115	353118		orf19.10868|IPF19902.1|IPF19845.1|Contig4-2197_0001|Contig4-2891_0002|orf6.2525|orf6.792|CA1165|CaO19.3360|IPF19902	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	353430	354131	-	ntar_34	353430	354131	1	354131	353430					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	354223	354295	+	ta(agc)3	354223	354295	1	354223	354295				tA(AGC)3.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	357089	359483	+	orf19.4551	357089	359483	1	357089	359483	357096	359483	CTN1	orf19.12026|orf19.10869|CAT1|IPF18747.1|IPF19359.2|IPF9082.2|YAT1|Contig4-2891_0007|orf6.285|orf6.2526|orf6.6697|CA4207|orf19.3361|orf19.361|CaO19.12026|CaO19.4551	Predicted carnitine acetyl transferase; required for growth on nonfermentable carbon sources but not for hyphal growth or virulence in mouse systemic model; transcription induced in macrophage; macrophage/pseudohyphal-repressed after 16 hr [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr1	360889	363080	+	orf19.4550	360889	363080	1	360889	363080	361046	362947		orf19.12025|IPF22708.1|IPF9079.2|Contig4-2891_0009|Contig4-2891_0010|orf6.6696|CA4206|CaO19.12025|CaO19.4550|IPF9079	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	363929	366456	+	orf19.4549	363929	366456	1	363929	366456	364189	366324	FGR38	orf19.12024|IPF9076.2|IPF14747.3|Contig4-2122_0008|Contig4-2845_0004|Contig4-2891_0011|orf6.6695|orf6.95|CA4205|LPF31|CaO19.4549|IFA10	Protein lacking an ortholog in S. cerevisiae; member of a family of related proteins; transposon mutation affects filamentous growth; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	366637	367949	+	orf19.4548	366637	367949	1	366637	367949	366747	367877	MAK32	orf19.12023|IPF22716.1|IPF14749.2|Contig4-2122_0005|orf6.6694|orf6.96|CA0013|CaO19.4548	Downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	367772	370132	-	orf19.4546	367772	370132	1	370132	367772	369824	367950	HOL4	orf19.12021|IPF14750.2|IPF28353.1|Contig4-2122_0003|orf6.6692|orf6.97|CA4204|CaO19.4546	Protein described as an ion transporter; alkaline upregulated by Rim101p; Plc1p-regulated; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	372140	375602	+	orf19.4545	372140	375602	2	372140|372440	372283|375602	372242	375457	SWI4	orf19.12020|IPF17386.2|IPF28367.1|orf6.6691|CA4203|CaO19.4545|SWI4.3f	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G1/S phase; predicted, conserved MBF binding sites upstream of G1/S-regulated genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	375786	376717	+	orf19.4544	375786	376717	1	375786	376717	375852	376571		orf19.12019|IPF22722.1|IPF8047.2|orf6.6690|CA4202|CaO19.12019|CaO19.4544|IPF8047	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	376575	378226	-	orf19.4543	376575	378226	1	378226	376575	378191	376662	UGA2	orf19.12018|IPF22712.1|IPF8048.2|orf6.6689|CA4201|UGA22|CaO19.12018|CaO19.4543|IPF8048	Protein not essential for viability; similar to S. cerevisiae Uga2p, which is succinate semialdehyde dehydrogenase with a role in glutamate catabolism; transcription regulated by Mig1p, Tup1p, Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	378422	379726	-	orf19.4542	378422	379726	1	379726	378422	379667	378480		orf19.12017|IPF22715.1|IPF8051.2|Contig4-2727_0009|Contig4-2727_0010|orf6.6688|CA4200|CaO19.12017|CCL1|CaO19.4542	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	379900	381161	-	orf19.4540	379900	381161	1	381161	379900	380801	380229	UBC8	orf19.12015|IPF22726.1|IPF8054.2|Contig4-2727_0007|orf6.6686|CA4199|CaO19.12015|CaO19.4540	Protein similar to S. cerevisiae Ubc8p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	381370	382417	-	orf19.4539	381370	382417	1	382417	381370	382108	381554		orf19.12014|IPF22724.1|IPF8055.2|Contig4-2727_0005|orf6.6685|CA4198|CaO19.4539|CaO19.12014|IPF8055	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	382638	383606	-	orf19.4538	382638	383606	1	383606	382638	383606	382776		orf19.12013|IPF22721.1|IPF8057.2|Contig4-2727_0003|orf6.6684|CA4197|CaO19.12013|RNA15|CaO19.4538|IPF8057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	383739	384842	+	orf19.4537	383739	384842	1	383739	384842	383769	384686		orf19.12012|IPF22720.1|IPF8059.2|Contig4-2727_0002|orf6.6683|CA4196|DST1|CaO19.4537|CaO19.12012	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	384602	386409	-	orf19.4536	384602	386409	1	386409	384602	386296	384806	CYS4	orf19.12011|IPF22713.1|IPF8061.2|Contig4-2727_0001|orf6.6682|CA4195|CaO19.4536|CaO19.12011	Predicted enzyme of sulfur amino acid biosynthesis; antigenic in mouse; upregulated in biofilm; alkaline upregulated; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	386496	388991	-	orf19.4535	386496	388991	1	388991	386496	388940	386613	PTR3	orf19.12010|IPF22706.1|IPF19799.1|Contig4-1672_0002|Contig4-2727_0013|orf6.6681|CA4194|CaO19.12010|CaO19.4535	Protein not essential for viability; similar to S. cerevisiae Ptr3p, which is a sensor of external amino acids; increased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	389152	390970	-	orf19.4534	389152	390970	1	390970	389152	390816	389287		orf19.12009|IPF22711.1|IPF7535.2|Contig4-1672_0004|orf6.6680|CA4193|CaO19.4534|CaO19.12009|IPF7535	Predicted ORF in Assemblies 19, 20 and 21; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	391076	392894	-	orf19.4533	391076	392894	1	392894	391076	392780	391263		orf19.12008|IPF22714.1|IPF7533.2|Contig4-2751_0002|orf6.6679|CA4192|CaO19.12008|CaO19.4533|IPF7533	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	393089	394481	+	orf19.4532	393089	394481	1	393089	394481	393312	394376		orf19.12007|IPF7531.2|IPF28355.1|Contig4-2751_0004|orf6.6678|CA4191|CaO19.4532|IPF7531	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	395499	399427	+	orf19.4531	395499	399427	1	395499	399427	395603	399427		orf19.12006|IPF7530.2|IPF28363.1|Contig4-2751_0006|Contig4-2751_0007|orf6.6677|CA4190|CaO19.4531|IPF7530	Putative PDR-subfamily ABC transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	400555	402162	+	orf19.4530.1	400555	402162	2	400555|400924	400637|402162	400609	401995		IPF22717.1|IPF7527.2|Contig4-2751_0008|CA4189|IPF7527	ORF Predicted by Annotation Working Group; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	402105	402829	-	orf19.4529	402105	402829	1	402829	402105	402787	402281		orf19.12004|IPF7525|IPF22725.1|IPF7525.1|Contig4-2751_0010|orf6.6675|CA4188|CaO19.12004|CaO19.4529	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	402967	403729	-	orf19.4528	402967	403729	1	403729	402967	403707	403162		orf19.12003|IPF7524.1|IPF18665.2|Contig4-2751_0011|orf6.6674|CA4187|CaO19.12003|CaO19.4528|IPF7524	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	404176	405404	+	ntar_35	404176	405404	1	404176	405404	404910	405035			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	405294	405736	+	ntar_36	405294	405736	1	405294	405736	405294	405512			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	406323	407278	-	ntar_37	406323	407278	1	407278	406323					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	406691	408328	+	orf19.4527	406691	408328	1	406691	408328	406691	408328	HGT1	orf19.12002|HGT11|IPF7518.2|IPF9983.2|Contig4-2702_0004|orf6.3044|orf6.6673|CA1506|CaO19.4527	High-affinity glucose transporter, member of major facilitator superfamily; transcription induced by progesterone and by drugs including chloramphenicol and benomyl; likely essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	407702	408212	-	ntar_38	407702	408212	1	408212	407702	408112	407822			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	408596	409058	+	ntar_39	408596	409058	1	408596	409058					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	411358	412386	+	orf19.4526	411358	412386	1	411358	412386	411358	412386	HSP30	orf19.12001|IPF22718.1|IPF9978.2|Contig4-2702_0008|Contig4-2702_0009|orf6.3045|CA1507|CaO19.12001|CaO19.4526	Protein described as similar to heat shock protein; fluconazole-downregulated; amphotericin B induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	412836	414053	+	orf19.4525	412836	414053	1	412836	414053	412836	413840		orf19.12000|IPF22719.1|IPF9977.2|Contig4-2702_0011|orf6.3046|CA1508|CaO19.12000|CaO19.4525|IPF9977	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	413963	416372	-	orf19.4524	413963	416372	2	416372|416158	416237|413963	416295	414112		ZCF24|orf19.11999|IPF22709.1|IPF19920.1|Contig4-2702_0012|orf6.3047|CA1509|IPF19920|IPF19920.3	Predicted zinc-finger protein of unknown function; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	416354	417696	+	orf19.4523	416354	417696	1	416354	417696	416475	417098		orf19.11998|IPF22723.1|IPF9973.2|Contig4-2702_0013|orf6.3048|CA1510|CaO19.11998|CaO19.4523|IPF9973	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	417015	417767	-	orf19.4522	417015	417767	1	417767	417015	417694	417101		orf19.11997|IPF22727.1|IPF9972.2|orf6.3049|CA1511|CaO19.4522|CaO19.11997|IPF9972.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	417954	420645	-	orf19.3661	417954	420645	1	420645	417954	420516	418042		orf19.11145|IPF23582.1|IPF11332.3|Contig4-2575_0009|orf6.135|orf6.2135|CA0927|UBP16|CaO19.3661|IPF11332|IPF11332.2	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	421076	424102	-	orf19.3663	421076	424102	1	424102	421076	423870	421288	PHO91	orf19.11147|IPF23580.1|IPF11335.1|Contig4-2575_0007|orf6.2133|CA0926|CaO19.11147|CaO19.3663|IPF11335	Putative low-affinity phosphate transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	425712	427097	+	orf19.3663.1	425712	427097	2	425712|426401	426036|427097	426009	426639			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	427823	428892	+	orf19.3664	427823	428892	1	427823	428892	427866	428861	HSP31	orf19.11148|IPF12039.2|IPF11340.3|Contig4-1615_0002|Contig4-1615_0004|orf6.6475|CA4034|CaO19.3664	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	429338	430814	+	orf19.3665	429338	430814	1	429338	430814	429394	430533		orf19.11149|IPF23602.1|IPF12040.2|Contig4-3059_0003|orf6.6476|CA4035|SET6|CaO19.3665|CaO19.11149|IPF12040	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	430048	432058	-	orf19.3666	430048	432058	1	432058	430048	432017	430530		orf19.11150|IPF23597.1|IPF12042.2|Contig4-3059_0004|orf6.6477|CA4036|CaO19.3666|CaO19.11150|IPF12042	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	432227	434005	+	orf19.3667	432227	434005	1	432227	434005	432248	433864		orf19.11151|IPF23592.1|IPF12044.2|Contig4-3059_0005|orf6.6478|CA4037|CaO19.3667|KIP99|CaO19.11151|KIP31	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	434337	436145	-	orf19.3668	434337	436145	1	436145	434337	436072	434435	HGT2	orf19.11152|RGT2|IPF23590.1|IPF5315.2|Contig4-3059_0006|orf6.6479|CA4038|CaO19.3668|CaO19.11152|HGT12	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	434651	435061	+	ntar_40	434651	435061	1	434651	435061	434651	434983			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	435499	435957	+	ntar_41	435499	435957	1	435499	435957					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	442376	444335	-	orf19.3669	442376	444335	1	444335	442376	444259	442472	SHA3	orf19.11153|SKS1|IPF23589.1|IPF5304.2|Contig4-3059_0011|orf6.6480|CA4039|CaO19.11153|CaO19.3669	Protein similar to S. cerevisiae Sha3p, which is a serine/threonine kinase involved in glucose transport; transposon mutation affects filamentous growth; fluconazole-induced; ketoconazole-repressed; induced in response to alpha pheromone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	446677	447274	+	ntar_42	446677	447274	1	446677	447274	446677	446904			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	447406	447641	+	ntar_43	447406	447641	1	447406	447641					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	448869	451094	-	orf19.3670	448869	451094	1	451094	448869	450824	449277	GAL1	orf19.11154|IPF23594.1|IPF5296.2|Contig4-3059_0016|orf6.6481|CA4040|CaO19.11154|CaO19.3670	Galactokinase; transcription regulated by galactose; transcription regulated by Mig1p and Tup1p; not required for systemic mouse virulence; farnesol-downregulated in biofilm; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	451304	451648	-	orf19.3671	451304	451648	1	451648	451304	451648	451304		orf19.11155|IPF23619.1|IPF28685.1|orf6.6482|CaO19.3671|CaO19.11155	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	451984	454259	+	orf19.3672	451984	454259	1	451984	454259	452186	454213	GAL10	orf19.11156|IPF23585.1|IPF5294.2|Contig4-3059_0020|orf6.6483|CA4041|CaO19.3672|CaO19.11156	UDP-glucose 4-epimerase, required for galactose utilization; mutant shows cell wall defects and increased filamentation; fluconazole-induced; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	454395	455266	+	orf19.3673	454395	455266	1	454395	455266	454418	454924		orf19.11157|IPF23609.1|IPF5292.1|Contig4-3059_0021|orf6.6484|CA4042|TRS23|CaO19.11157|CaO19.3673	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	454883	455875	-	orf19.3674	454883	455875	1	455875	454883	455845	454883	GAL102	orf19.11158|IPF23603.1|IPF5291.1|Contig4-3059_0023|orf6.6485|CA4043|TGD99|CaO19.3674|CaO19.11158|IPF5291	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	456465	458032	+	orf19.3675	456465	458032	1	456465	458032	456773	457933	GAL7	orf19.11159|IPF23601.1|IPF9203.2|Contig4-2775_0014|orf6.6486|CA4044|CaO19.11159|CaO19.3675	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	458358	459438	+	orf19.3676	458358	459438	1	458358	459438	458388	459326	ABP140	orf19.11160|IPF23604.1|IPF9204.1|Contig4-2775_0013|orf6.6487|CA4045|CaO19.3676|CaO19.11160	Protein similar to S. cerevisiae actin-binding protein Abp140p; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	459212	460327	-	orf19.3677	459212	460327	1	460327	459212	460152	459316		orf19.11161|IPF23607.1|IPF9205.2|Contig4-2775_0011|orf6.6488|CA4046|CaO19.11161|ATG5|CaO19.3677|IPF9205	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	460783	463066	+	orf19.3678	460783	463066	1	460783	463066	461092	462807		orf19.11162|IPF9206|IPF23591.1|IPF9206.2|Contig4-2775_0010|orf6.6489|CA4047|CaO19.11162|CaO19.3678	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	462506	463924	-	orf19.3679	462506	463924	1	463924	462506	463884	462874		orf19.11163|IPF9207.2|IPF28682.1|Contig4-2775_0009|orf6.6490|CA4048|CaO19.3679|CaO19.11163|IPF9207	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	465099	468016	+	orf19.3680	465099	468016	1	465099	468016	465662	467674	7-Sep	orf19.11164|IPF23586.1|IPF9210.2|Contig4-2775_0002|orf6.875|CA6210|SHS1|CaO19.11164|CaO19.3680	Septin, required for wild-type invasive growth in vitro but not required for virulence in a mouse model of systemic infection; localizes to hyphal septum or bud neck; Asn-rich; aberrant gel mobility [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	468557	468790	+	ntar_44	468557	468790	1	468557	468790					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	469048	472041	+	orf19.3681	469048	472041	1	469048	472041	469144	471771		orf19.11165|IPF10376.1|IPF28677.1|Contig4-2750_0016|orf6.2498|CA1147|CaO19.11165|KAP95|CaO19.3681	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	472250	472619	-	ntar_45	472250	472619	1	472619	472250					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	472740	474071	+	ntar_46	472740	474071	1	472740	474071	473172	473447			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	472850	473260	-	ntar_47	472850	473260	1	473260	472850					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	473363	474023	-	ntar_48	473363	474023	1	474023	473363	473989	473867			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	474174	475920	+	orf19.3682	474174	475920	1	474174	475920	474954	475679	CWH8	orf19.11166|IPF23608.1|IPF10381.2|Contig4-2750_0005|orf6.2497|CA1146|CaO19.11166|CAX4|CaO19.3682	Putative dolichyl pyrophosphate (Dol-P-P) phosphatase; ketoconazole-induced; expression is increased in a fluconazole-resistant isolate; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	475769	477186	-	orf19.3683	475769	477186	1	477186	475769	477070	475931		orf19.11167|IPF10382.2|IPF18541.2|Contig4-2750_0004|orf6.2496|orf6.3883|CA1145|GCS1|CaO19.3683	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	477313	478163	+	ntar_49	477313	478163	1	477313	478163					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	477321	478239	-	orf19.3684	477321	478239	1	478239	477321	478218	477340		orf19.11168|IPF19650.1|IPF18542.1|IPF19649.1|Contig4-2750_0002|orf6.2495|orf6.3882|CA1144|SPS19|SPS19.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	478505	481653	-	orf19.3685	478505	481653	1	481653	478505	481603	478661	PSY2	orf19.11169|IPF18751.2|IPF13744.2|orf6.2494|orf6.3881|CA2114|CaO19.3685|IPF13744	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	482242	483625	-	orf19.3686	482242	483625	1	483625	482242	483625	482414		orf19.11170|IPF23600.1|IPF13746.2|Contig4-2096_0001|orf6.3880|CA2113|CaO19.11170|ATP12|CaO19.3686	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	483580	484241	+	orf19.3687	483580	484241	1	483580	484241	483733	484098		orf19.11171|IPF23613.1|IPF13747.2|Contig4-2096_0002|orf6.3879|CA2112|CaO19.11171|PFD1|CaO19.3687	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	483923	484638	-	orf19.3688	483923	484638	1	484638	483923	484574	484209		orf19.11172|IPF23616.1|IPF13748.2|Contig4-2096_0003|orf6.3878|CA2111|CaO19.3688|IPF13748	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	484733	486642	-	orf19.3689	484733	486642	1	486642	484733	486512	484881		orf19.11173|orf19.11174|IPF23610.1|IPF23605.1|IPF18544.1|IPF13749.2|Contig4-2096_0004|Contig4-2096_0006|Contig4-2582_0008|orf6.3877|orf6.3876|CA2110|CA2109|orf19.3690|IPF13749.3f	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	487070	488344	-	orf19.3690.2	487070	488344	2	488344|487747	488214|487070	488232	487383		IPF23615.1|IPF10719.1|CA2108|RPL26A.3f|RPL26A.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	488546	489165	-	tr(ccg)1	488546	489165	2	489165|488717	488749|488546	489158	488936		tR(CCG)1.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	489308	490466	+	orf19.3691	489308	490466	1	489308	490466	489369	490175		orf19.11175|IPF23606.1|IPF10716.1|Contig4-2582_0002|orf6.3875|CA2107|FMP17|CaO19.11175|CaO19.3691|IPF10716	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	490289	492214	-	orf19.3693	490289	492214	1	492214	490289	492214	490289	PGA5	orf19.11177|IPF23587.1|IPF10714.2|Contig4-2582_0001|orf6.3873|GAS12|CA2106|CaO19.11177|CaO19.3693|IPF10714	[NOT TRANSCRIBED?] Putative GPI-anchored protein; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	492498	496408	-	orf19.3694	492498	496408	1	496408	492498	496257	492625		orf19.11178|IPF23618.1|IPF10711.2|Contig4-1599_0004|Contig4-2582_0009|orf6.3872|CA2105|CaO19.3694|CaO19.11178|IPF10711	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	497860	499098	-	orf19.2925	497860	499098	1	499098	497860	499071	498391		orf19.10442|IPF24343.1|IPF15237.1|Contig4-2057_0002|orf6.1561|CA0561|CIN4|CaO19.10442|CaO19.2925	Predicted ORF in Assemblies 19, 20 and 21 (see Locus History Note for Assembly 19 correction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	499153	501955	+	orf19.2926	499153	501955	1	499153	501955	499258	501750		orf19.10443|IPF24250.1|IPF15236.2|Contig4-2057_0003|Contig4-2057_0005|Contig4-2249_0007|orf6.1562|CA0562|CaO19.10443|CaO19.2926|PSO2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	501945	503666	-	orf19.2927	501945	503666	1	503666	501945	503425	502091	MNN11	orf19.10444|IPF18555.2|IPF14216.2|Contig4-2249_0006|orf6.1563|CA0563|CaO19.2927	Protein with similarity to mannosyltransferases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	504038	505444	-	orf19.2928	504038	505444	1	505444	504038	505263	504190		orf19.10445|IPF14219.2|IPF18940.2|Contig4-2249_0005|orf6.1564|orf6.3784|CA0564|CaO19.2928|IPF14219|CA2042	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	505502	505759	+	ntar_50	505502	505759	1	505502	505759	505502	505660			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	505711	513014	-	orf19.2929	505711	513014	2	513014|511700	512883|505711	511700	506007	GSC1	orf19.10446|FKS1|IPF24355.1|IPF10681.2|GSL21|Contig4-2249_0002|orf6.3785|GSL2|CA2043|CaO19.2929|CaO19.10446	Subunit of beta-1,3-glucan synthase; essential; gsc1 allele determines resistance/sensitivity to echinocandin antifungals; 16 predicted membrane-spanning regions; mRNA abundance declines after yeast-to-hyphal transition; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	514736	514981	+	ntar_51	514736	514981	1	514736	514981					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	515107	515451	+	ntar_52	515107	515451	1	515107	515451	515107	515274			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	515619	517792	-	orf19.2930	515619	517792	1	517792	515619	517581	515635		orf19.10447|IPF10668.2|IPF18514.2|Contig4-2150_0003|orf6.3786|orf6.3995|CA2044|CaO19.2930|IPF10668	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	518120	519369	-	orf19.2933	518120	519369	1	519369	518120	519223	518222		orf19.10450|IPF10665.2|IPF8107.2|Contig4-2841_0001|Contig4-2841_0002|orf6.3789|orf6.3997|CA2045|CaO19.2933|IPF8107	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	519478	520051	+	ntar_53	519478	520051	1	519478	520051					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	519885	520682	-	orf19.2934	519885	520682	1	520682	519885	520640	520110		orf19.10451|IPF8108.2|IPF28911.1|Contig4-2841_0004|orf6.3790|orf6.3998|CA2046|BUD20|CaO19.2934|IPF8108	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	520935	522238	+	orf19.2935	520935	522238	2	520935|521337	520989|522238	521342	522004	RPL10	orf19.10452|IPF8109.2|IPF28907.1|Contig4-2841_0005|orf6.3791|orf6.3999|CA2047|CaO19.2935	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases downregulated upon phagocytosis by murine macrophage; transcription regulated upon yeast-hyphal switch; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	522422	523459	+	orf19.2936	522422	523459	1	522422	523459	522669	523139		orf19.10453|IPF18554.2|IPF8110.2|Contig4-2841_0007|orf6.4000|CA2197|CaO19.10453|CaO19.2936|IPF8110	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	523880	524995	+	orf19.2937	523880	524995	1	523880	524995	524030	524788	PMM1	orf19.10454|IPF24340.1|IPF8112.1|Contig4-2841_0009|orf6.4001|CA2198|CaO19.10454|CaO19.2937	Phosphomannomutase; enzyme of O- and N-linked mannosylation; interconverts mannose-6-phosphate and mannose-l-phosphate; functional homolog of S. cerevisiae Sec53p; antigenic during murine systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	524805	526953	-	orf19.2938	524805	526953	1	526953	524805	526916	524895		orf19.10455|IPF8113|IPF24263.1|IPF8113.2|Contig4-2841_0010|orf6.4002|CA2199|CaO19.2938|FMP25|CaO19.10455	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	527105	527898	+	orf19.2939	527105	527898	1	527105	527898	527154	527780		orf19.10456|IPF24347.1|IPF8114.2|Contig4-2841_0011|orf6.4003|CA2200|CaO19.10456|FMP32|CaO19.2939|IPF8114	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	528014	528866	+	orf19.2940	528014	528866	1	528014	528866	528083	528814		orf19.10457|IPF24341.1|IPF19943.1|Contig4-2841_0013|orf6.4004|CA2201|BOS1|CaO19.10457|CaO19.2940	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	530041	532028	+	orf19.2941	530041	532028	1	530041	532028	530226	531962	SCW4	orf19.10458|IPF24282.1|IPF8122.1|Contig4-2841_0015|orf6.4005|CA2202|CMP66|CaO19.10458|CaO19.2941	Putative cell wall protein; exogenously expressed protein is a substrate for Kex2p processing in vitro; expression is regulated upon white-opaque switching; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	532146	532324	+	ntar_54	532146	532324	1	532146	532324					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	532269	534323	-	orf19.2942	532269	534323	1	534323	532269	534217	532457	DIP5	orf19.10459|orf19.10460|IPF24319.1|IPF24337.1|IPF8123.2|IPF10236.2|DIP51|Contig4-2841_0016|orf6.4006|orf6.4007|CA2203|CA2204|orf19.2943|DIP52|DIP51.3f	Putative permease for dicarboxylic amino acids; mutation confers hypersensitivity to toxic ergosterol analog; transcriptionally induced upon phagocytosis by macrophage; Gcn4p-regulated; upregulated by Rim101p at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	536181	536491	-	ntar_55	536181	536491	1	536491	536181					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	536589	536661	-	tr(ucu)4	536589	536661	1	536661	536589				tR(UCU)4.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	536985	537284	+	orf19.2943.5	536985	537284	1	536985	537284	536985	537284		IPF10241.3	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	537126	539136	-	orf19.2945	537126	539136	1	539136	537126	539136	537442	PUT4	orf19.10462|IPF24286.1|IPF10243.2|Contig4-2682_0007|orf6.6671|CA4186|CaO19.10462|CaO19.2945	Putative proline permease; fungal-specific (no human or murine homolog); repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	537849	538389	+	ntar_56	537849	538389	1	537849	538389					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	538653	539002	+	ntar_57	538653	539002	1	538653	539002	538683	538817			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	539047	539470	+	ntar_58	539047	539470	1	539047	539470	539047	539229			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	540058	541569	+	orf19.2946	540058	541569	1	540058	541569	540058	541569	HNM4	orf19.10463|IPF24296.1|IPF10246.2|Contig4-2682_0005|orf6.6670|CA4185|CaO19.10463|CaO19.2946	Putative choline permease; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	541584	542739	-	orf19.2947	541584	542739	1	542739	541584	542657	541779	SNZ1	orf19.10464|IPF24330.1|IPF10248.2|Contig4-2682_0003|orf6.6669|CA4184|SNZ99|CaO19.2947|CaO19.10464	Detected in stationary phase cultures; soluble in hyphae; induced on yeast to hyphal switch, in response to 3-aminotriazole, or in azole-resistant strain overexpressing MDR1; regulated by Gcn4p, macrophage; no human/murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	543965	544968	+	orf19.2948	543965	544968	1	543965	544968	544113	544862	SNO1	orf19.10465|IPF4408.2|IPF28909.1|Contig4-2696_0001|orf6.6668|CA4183|CaO19.2948	Protein of unknown function expressed during stationary phase; transcription is regulated by Tup1p, Efg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	545055	549479	+	orf19.2949	545055	549479	1	545055	549479	545064	549452		orf19.10466|IPF19797.1|IPF28917.1|Contig4-2696_0005|orf6.6667|CA4182|CaO19.10466|IML1|CaO19.2949|IPF19797	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	549413	550678	-	orf19.2951	549413	550678	1	550678	549413	550630	549551	HOM6	orf19.10468|IPF24318.1|IPF4417.2|Contig4-2696_0009|orf6.6665|CA4181|CaO19.2951|CaO19.10468	Protein described as homoserine dehydrogenase; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); macrophage-induced protein; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	550897	552485	-	orf19.2952	550897	552485	1	552485	550897	552433	550994	EXG2	orf19.10469|orf6.6664|IPF24292.1|IPF4419.1|Contig4-2696_0012|Contig4-2696_0013|Contig4-2696_0015|CA4180|CaO19.2952|CaO19.10469	GPI-anchored cell wall protein, similar to S. cerevisiae Exg2p, which is an exo-1,3-beta-glucosidase; predicted Kex2p substrate; induced during cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	552567	553516	-	orf19.2953	552567	553516	1	553516	552567	553430	552915		orf19.10470|IPF24356.1|IPF4420.1|Contig4-2696_0016|orf6.6663|CA4179|TOM20|CaO19.2953|CaO19.10470	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	553770	554598	+	orf19.2954	553770	554598	1	553770	554598	553815	554417		orf19.10471|IPF24348.1|IPF4421.2|Contig4-2696_0017|orf6.6662|CA4178|CaO19.2954|CaO19.10471|IPF4421	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	554499	555520	-	orf19.2956	554499	555520	1	555520	554499	555461	554634	MGM101	orf19.10473|IPF24328.1|IPF4423.1|Contig4-2696_0018|orf6.6660|CA4177|CaO19.2956|CaO19.10473	Putative mitochondrial genome maintenance protein; fungal-specific (no human or murine homolog); mutation confers hypersensitivity to tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	555732	558158	-	orf19.2957	555732	558158	1	558158	555732	558158	555732		orf19.10474|IPF24251.1|IPF4425.2|orf6.6659|MNN4|CA4176|CaO19.2957|MNN43|CaO19.10474|IFX2|IPF4425.repeat1	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	558798	561737	-	orf19.2958	558798	561737	1	561737	558798	561509	558981		orf19.10475|IPF24247.1|IPF4427.2|Contig4-2873_0015|orf6.6658|CA4175|CaO19.10475|MNN44|CaO19.2958|IFX1|IPF4425.repeat2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	562417	562719	-	orf19.2959	562417	562719	1	562719	562417	562719	562417		orf19.10476|orf6.6657|CaO19.2959|CaO19.10476	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	563797	564120	+	ntar_59	563797	564120	1	563797	564120					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	564086	564830	-	orf19.2959.1	564086	564830	1	564830	564086	564488	564315		IPF24404.1|IPF4430.1|CA4174|IPF4430|IPF4119.5	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	565057	565230	-	ntar_60	565057	565230	1	565230	565057					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	565673	567305	+	orf19.2960	565673	567305	1	565673	567305	565743	567233	FRS2	orf19.10477|IPF24297.1|IPF4431.1|Contig4-2873_0010|orf6.6656|CA4173|CaO19.10477|CaO19.2960	Putative tRNA-Phe synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	567452	569143	+	orf19.2961	567452	569143	1	567452	569143	567502	568695		orf19.10478|IPF24305.1|IPF4432.2|Contig4-2873_0007|orf6.6655|CA4172|CaO19.2961|CaO19.10478|IPF4432	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	574140	575536	+	orf19.2962	574140	575536	1	574140	575536	574280	575167		orf19.10479|IPF24329.1|IPF7785.1|Contig4-2716_0004|orf6.6654|CA4171|CaO19.10479|CaO19.2962|IPF7785	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	574623	576483	-	orf19.2963	574623	576483	1	576483	574623	576458	575538		orf19.10480|IPF24327.1|IPF7784.2|Contig4-2716_0005|orf6.6653|CA4170|CaO19.10480|CaO19.2963|IPF7784	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	576630	579126	-	orf19.2964	576630	579126	1	579126	576630	579105	576718		orf19.10481|IPF24254.1|IPF7783.2|Contig4-2716_0006|Contig4-2716_0007|orf6.6652|CA4169|CaO19.2964|RSC2|CaO19.10481	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	579765	581023	+	orf19.2965	579765	581023	1	579765	581023	579810	580862		orf19.10482|IPF24314.1|IPF7781.2|Contig4-2716_0008|orf6.6651|CA4168|CaO19.10482|CaO19.2965|IPF7781	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	581084	581678	+	orf19.2965.1	581084	581678	2	581084|581519	581413|581678	581272	581568			Predicted ORF in Assembly 20 and 21; similar to human SERF2; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	581819	582847	+	orf19.2966	581819	582847	1	581819	582847	581904	582662		orf19.10483|IPF24336.1|IPF7778.2|Contig4-2061_0002|orf6.6650|CA4167|CaO19.10483|CaO19.2966|IPF7778	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	582904	584139	+	orf19.2967	582904	584139	1	582904	584139	582959	584011	TIF34	orf19.10484|IPF24320.1|IPF7775.2|Contig4-2061_0003|orf6.6649|CA4166|CaO19.2967|CaO19.10484	Putative translation initiation factor; mutation confers hypersensitivity to roridin A and verrucarin A; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	584392	585135	+	orf19.2968	584392	585135	1	584392	585135	584392	584994		IPF7774.2|IPF28910.1|Contig4-2061_0004|orf6.2121|CA4165|CaO19.2968|IPF7774|orf6.6648|IPF7774.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	585890	588603	+	orf19.2969	585890	588603	1	585890	588603	585974	588532	RAD16	orf19.10486|IPF24246.1|IPF15502.2|orf6.2120|CA0917|CaO19.10486|CaO19.2969	Protein similar to S. cerevisiae Rad16p; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	587979	588541	-	ntar_61	587979	588541	1	588541	587979	588457	588335			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	588912	593357	+	orf19.2970	588912	593357	1	588912	593357	588960	593174	LYS2	orf19.10487|IPF17598.2|IPF19710.1|Contig4-1985_0002|orf6.2119|orf6.240|orf6.5719|CA0916|CaO19.2970	Large subunit of heterodimeric alpha-aminoadipate reductase; enzyme of lysine biosynthesis; contains predicted binding sites for AMP and alpha-aminoadipate; feedback inhibited by lysine or thialysine; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	593636	595690	+	orf19.2971	593636	595690	1	593636	595690	593755	595524		orf19.10488|IPF7316.2|IPF18834.2|Contig4-1985_0001|orf6.5718|CA3451|CaO19.2971|IPF7316	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	595793	596505	+	ntar_62	595793	596505	1	595793	596505					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	595941	596604	-	ntar_63	595941	596604	1	596604	595941	596256	596134			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	597733	600066	+	orf19.2972	597733	600066	1	597733	600066	598075	599790	PDE2	orf19.10489|IPF24285.1|IPF7318.2|Contig4-2816_0009|Contig4-2816_0010|orf6.5717|CA3450|CaO19.10489|CaO19.2972	Cyclic nucleotide phosphodiesterase, high affinity; role in moderating signaling via cAMP; required for wild-type virulence, hyphal growth, switching, and cell wall, but not for pseudohyphal growth; expressed shortly after hyphal induction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	599883	600108	-	ntar_64	599883	600108	1	600108	599883					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	600575	602988	+	orf19.2973	600575	602988	1	600575	602988	600742	602781		orf19.10490|IPF24265.1|IPF7320.2|Contig4-2816_0007|orf6.5716|CA3449|CaO19.2973|CaO19.10490|IPF7320	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	602764	603874	-	orf19.2974	602764	603874	1	603874	602764	603791	603189	YKT6	orf19.10491|IPF24350.1|IPF7321.1|Contig4-2816_0005|orf6.5715|CA3448|CaO19.10491|CaO19.2974	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	604482	605695	+	orf19.2975	604482	605695	1	604482	605695	604735	605601	YPT7	orf19.10492|IPF24331.1|IPF7322.2|Contig4-2816_0003|orf6.5714|RAB7|CA3447|YPT71|CaO19.10492|CaO19.2975|YPT70	Protein of YPT/RAB family; induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	605680	606761	-	orf19.2977	605680	606761	1	606761	605680	606542	605784		orf19.10494|IPF24332.1|IPF7324.2|Contig4-2816_0002|orf6.5712|CA3446|CaO19.10494|CaO19.2977|IPF7324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	607044	607672	-	orf19.2978	607044	607672	1	607672	607044	607584	607210		orf19.10495|IPF24393.1|IPF7325.1|Contig4-2816_0001|orf6.5711|CA3445|CaO19.2978|CaO19.10495|IPF7325	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	607869	610080	-	orf19.2980	607869	610080	1	610080	607869	610046	607869		orf19.10497|IPF24259.1|IPF11323.2|Contig4-2816_0011|orf6.5709|CA3444|CaO19.10497|TIP39|CaO19.2980|IPF11323	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	607870	608365	+	ntar_65	607870	608365	1	607870	608365					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	610168	611716	-	orf19.2982	610168	611716	1	611716	610168	611697	610267		orf19.10499|IPF24299.1|IPF11324.1|Contig4-2573_0011|orf6.5707|CA3443|CaO19.2982|ATG17|CaO19.10499|IPF11324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	611964	613216	+	orf19.2983	611964	613216	1	611964	613216	611996	613108	CDC73	orf19.10500|IPF24313.1|IPF11326.2|Contig4-2573_0010|orf6.5706|CA3442|CaO19.2983|CaO19.10500|IPF11326	Protein similar to S. cerevisiae Cdc73p, which is a transcription elongation factor; cdc73 kap114 double transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	613123	614586	-	orf19.2984	613123	614586	1	614586	613123	614535	613168		orf19.10501|IPF24303.1|IPF11327.1|Contig4-2573_0009|orf6.5705|CA3441|CaO19.2984|MST1|CaO19.10501	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	614674	615384	-	orf19.2985	614674	615384	1	615384	614674	615281	614763		orf19.10502|IPF24360.1|IPF11328.1|Contig4-2573_0007|orf6.5704|CA3440|CaO19.10502|CaO19.2985|IPF11328	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	614761	616299	+	orf19.2986	614761	616299	1	614761	616299	615529	615906		orf19.10503|IPF24392.1|IPF11329.2|Contig4-2573_0005|orf6.5703|CA3439|CaO19.10503|CaO19.2986|IPF11329	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	615875	617943	-	orf19.2987	615875	617943	1	617943	615875	617788	616001		orf19.10504|IPF24281.1|IPF11330.2|Contig4-2573_0003|Contig4-2573_0004|orf6.5702|CA3438|MDM31|CaO19.10504|CaO19.2987|IPF11330	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	618386	619840	+	orf19.2988	618386	619840	1	618386	619840	618441	619706		orf19.10505|IPF15925.2|IPF28906.1|Contig4-2573_0001|orf6.5701|CA3437|CaO19.10505|CaO19.2988|IPF15925	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	620076	621432	+	orf19.2989	620076	621432	1	620076	621432	620165	621193		orf19.10506|IPF15924.2|IPF16795.1|Contig4-2184_0001|orf6.1981|orf6.5700|CA0821|CaO19.2989|IPF16795	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	622031	624107	-	orf19.2990	622031	624107	1	624107	622031	623597	622281	XOG1	orf19.10507|EXG|EXG1|IPF24307.1|IPF14073.2|Contig4-2184_0004|orf6.1982|CA0822|CaO19.2990	Exo-1,3-beta-glucanase, major exoglucanase; member of family 5 glycosyl hydrolases; affects sensitivity to inhibitors of chitin and glucan synthesis; not required for yeast-to-hyphal transition or for virulence in mouse systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	628105	629865	+	orf19.2991	628105	629865	1	628105	629865	628105	629865	HOL1	orf19.10508|IPF24277.1|IPF5592.2|Contig4-3020_0013|orf6.4874|CA2820|HOL2|CaO19.2991|CaO19.10508	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p; macrophage/pseudohyphal-repressed; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	630176	630824	+	orf19.2992	630176	630824	1	630176	630824	630252	630572	RPP1A	orf19.10509|RP1A|CARP1A|RPA1|IPF24399.1|IPF5594.2|RPP1A-1|Contig4-3020_0012|orf6.4873|CA2819|CaO19.2992|CaO19.10509	Conserved acidic ribosomal protein, likely to be involved in regulation of translation elongation; interacts with Rpp2Bp; one of four similar C. albicans ribosomal proteins (Rpp1Ap, Rpp1Bp, Rpp2Ap, Rpp2Bp) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	630947	631742	-	orf19.2994	630947	631742	1	631742	630947	631681	631073	RPL13	orf19.10511|IPF24346.1|IPF5596.2|RPL13A|Contig4-3020_0010|orf6.4871|CA2818|CaO19.2994|CaO19.10511	Protein described as ribosomal subunit; antigenic during murine systemic infection; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	632063	633483	+	orf19.2994.1	632063	633483	2	632063|632490	632162|633483	632142	632897	RPS16A	IPF24384.1|IPF5598.2|Contig4-3020_0009|CA2817|RPS16B|RPS16|RPS16.3	Macrophage/pseudohyphal-induced after 16 h [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	633651	634674	+	orf19.2995	633651	634674	1	633651	634674	633825	634583		orf19.10512|IPF24338.1|IPF5601.2|Contig4-3020_0008|orf6.4870|CA2816|CaO19.2995|CaO19.10512|IPF5601	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	634144	634862	-	ntar_66	634144	634862	1	634862	634144	634613	634359			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	635050	638390	+	orf19.2996	635050	638390	1	635050	638390	635166	638321		orf19.10513|IPF24407.1|IPF5604.2|Contig4-3020_0006|orf6.4869|CA2815|CaO19.10513|CaO19.2996|IPF5604	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	638227	639076	-	orf19.2998	638227	639076	1	639076	638227	639028	638399	TSR2	orf19.10515|IPF24349.1|IPF5607.1|Contig4-3020_0003|orf6.4867|CA2814|CaO19.2998|CaO19.10515|IPF5607	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	639128	641709	-	orf19.3000	639128	641709	1	641709	639128	641622	639205	ORC1	orf19.10518|IPF5612.2|IPF5345.3|Contig4-3020_0001|orf6.4864|orf6.5289|CA2813|CaO19.3000	Predicted ORF in Assemblies 19, 20 and 21; essential for viability; similar to S. cerevisiae Orc1p origin recognition complex subunit [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	641830	642800	-	orf19.3001	641830	642800	2	642800|642592	642671|641830	642705	642025	TEM1	orf19.10519|IPF5346.1|IPF5613.1|Contig4-3096_0001|orf6.4863|orf6.5288|CA2812|SPG1|CaO19.3001	Protein similar to S. cerevisiae Tem1p, which is a GTPase involved in termination of the M phase of the cell cycle; induced under Cdc5p depletion [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	643244	644221	+	orf19.3002	643244	644221	1	643244	644221	643289	644059	RPS1	orf19.10520|RPS10|RP10|IPF5347.2|IPF28908.1|RPS1A|Contig4-3096_0003|orf6.4862|orf6.5287|CA2811|CaO19.3002|RPS3A	Probable ortholog of S. cerevisiae ribosomal protein Rp10 (Rps1Ap and Rps1Bp), elicits a host antibody response during infection; transcription is induced during active growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	645044	649787	+	orf19.3003	645044	649787	2	645044|645376	645182|649787	645168	649614		orf19.10521|IPF24377.1|IPF5353.2|Contig4-3096_0004|Contig4-3096_0005|orf6.5286|CA3124|IPF5353|IPF5353.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	650079	651332	+	orf19.3003.1	650079	651332	2	650079|650503	650140|651332	650129	651021	RPL6	IPF24361.1|IPF5354.2|Contig4-3096_0006|CA3123|RPL6.3	Protein similar to S. cerevisiae Rpl6p, which is a ribosomal subunit; transposon mutation affects filamentous growth; translation-related genes are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	651883	653372	+	orf19.3004	651883	653372	1	651883	653372	651967	653199		orf19.10522|IPF24308.1|IPF5356.2|Contig4-3096_0008|orf6.5285|CA3122|CaO19.10522|CaO19.3004|IPF5356	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	653267	655492	-	orf19.3006	653267	655492	1	655492	653267	655266	653512		orf19.10524|IPF24284.1|IPF5357.2|Contig4-3096_0010|orf6.5283|CA3121|GGA2|CaO19.10524|CaO19.3006|GGA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	655725	656483	+	orf19.3007	655725	656483	1	655725	656483	655863	656339		orf19.10525|IPF24369.1|IPF5358.2|Contig4-3096_0014|orf6.5282|CA3120|CaO19.10525|CaO19.3007|IPF5358	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	656333	657378	-	orf19.3007.2	656333	657378	2	657378|657140	657231|656333	657266	656511		IPF24352.1|IPF5360.1|Contig4-3096_0015|CA3119|IPF5360|IPF5360.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	657452	658730	-	orf19.3008	657452	658730	1	658730	657452	658608	657637	COQ4	orf19.10526|IPF24323.1|IPF5361.2|Contig4-3096_0016|orf6.5281|CA3118|CaO19.3008|CaO19.10526	Protein described as having role in coenzyme Q biosynthesis; transcriptionally induced by interaction with macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	658783	660916	-	orf19.3009	658783	660916	1	660916	658783	660836	658869		orf19.10527|IPF5363|IPF24268.1|IPF5363.2|Contig4-3096_0018|orf6.5280|CA3117|CaO19.3009|CaO19.10527	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	660883	662018	+	orf19.3010	660883	662018	1	660883	662018	660994	661857		orf19.10528|IPF24322.1|IPF5364.2|Contig4-3096_0019|orf6.5279|CA3116|CaO19.3010|CaO19.10528|LAB2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	662012	664570	-	orf19.3010.1	662012	664570	2	664570|663452	664342|662012	664402	662242	ECM33	orf19.10528.1|ECM33.3|IPF24311.1|IPF5366.2|Contig4-3096_0020|CA3115|ECM33.3f	GPI-anchored cell wall protein; mutants show cell-wall defects and reduced adhesion, host cell damage, and endocytosis; mutant infection is immunoprotective in murine model; fluconazole-induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	664105	664270	+	ntar_67	664105	664270	1	664105	664270	664105	664260			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	668690	672153	-	orf19.3012	668690	672153	1	672153	668690	672029	668832	ARO80	orf19.10530|IPF20024.1|IPF28935.1|Contig4-3096_0034|orf6.7749|orf6.5277|CA5048|CaO19.10530|CaO19.3012|IPF20024|CA3114|IPF18384|IPF18384.1	Regulator of aromatic alcohol biosynthesis via the Ehrlich pathway; not essential for viability; similar to S. cerevisiae Aro80p, which is a transcriptional activator required for aromatic amino acid catabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	672293	674003	-	orf19.3013	672293	674003	2	674003|673706	673869|672293	673909	672554	CDC12	orf19.10531|IPF24312.1|IPF3714.2|Contig4-3096_0035|orf6.7750|CA5049|IPF3714	Septin; essential for viability; gene has predicted splice sites; forms ring at sites of cell division and also forms filaments in mature chlamydospore; filamentous growth induced; regulated by Nrg1p, Tup1p, tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	674767	676855	-	orf19.3014	674767	676855	2	676855|676024	676768|674767	675939	675145	BMH1	orf19.10532|IPF24334.1|IPF3712.2|Contig4-3096_0038|orf6.7751|CA5050|CaO19.10532|CaO19.3014|BMH2	14-3-3 protein, role in hyphal growth; possibly regulated by host interaction; sole 14-3-3 protein in C. albicans while S. cerevisiae has two 14-3-3 proteins; localizes to cell surface of yeast-form cells but not of hyphae; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	677269	679206	-	orf19.3015	677269	679206	1	679206	677269	679161	677467	ARX1	orf19.10533|IPF24288.1|IPF3709.1|Contig4-3096_0039|orf6.7752|CA5051|CaO19.10533|CaO19.3015|IPF3709	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	679366	679493	+	ntar_68	679366	679493	1	679366	679493					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	679763	680529	+	orf19.3016	679763	680529	1	679763	680529	679856	680281		orf19.10534|IPF24371.1|IPF3708.2|Contig4-3096_0040|orf6.7753|CA5052|CaO19.3016|CaO19.10534|IPF3708	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	680212	681566	-	orf19.3018	680212	681566	1	681566	680212	681533	680313	SPP1	orf19.10536|IPF24310.1|IPF3707.2|Contig4-3096_0042|orf6.7755|CA5053|CaO19.3018|CaO19.10536|IPF3707	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	681659	683921	+	orf19.3019	681659	683921	1	681659	683921	681715	683751		orf19.10537|IPF24266.1|IPF3704.2|IPF3704|Contig4-3096_0043|orf6.7756|CA5054|CaO19.3019|CaO19.10537	Transcription may be increased in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	683882	684247	-	ntar_69	683882	684247	1	684247	683882	684247	684125			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	683972	685252	+	orf19.3021	683972	685252	2	683972|684073	683998|685252	683972	685176		orf19.10539|IPF24316.1|IPF3701.1|Contig4-3096_0044|orf6.7758|CA5055|IPF3701	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=F]
Ca21chr1	684251	684607	-	ntar_70	684251	684607	1	684607	684251	684607	684455			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	684684	685064	-	ntar_71	684684	685064	1	685064	684684	684886	684764			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	685430	686498	+	orf19.3022	685430	686498	1	685430	686498	685483	686415		orf19.10540|IPF24326.1|IPF3698.1|Contig4-3096_0045|orf6.7759|CA5056|RSM24|CaO19.10540|CaO19.3022|IPF3698	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	686543	688759	+	orf19.3023	686543	688759	1	686543	688759	686699	688582		orf19.10541|IPF24276.1|IPF3695.1|Contig4-3096_0047|orf6.7760|CA5057|CaO19.3023|NGG1|CaO19.10541|IPF3695	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	688533	690181	-	orf19.3026	688533	690181	1	690181	688533	690091	688688	MAS1	orf19.10544|IPF24301.1|IPF3692.2|Contig4-3096_0048|orf6.7763|CA5058|CaO19.10544|CaO19.3026	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	690357	691858	+	orf19.3027	690357	691858	1	690357	691858	690401	691687		orf19.10545|IPF24306.1|IPF3691.2|Contig4-3096_0049|orf6.7764|CA5059|ARP7|CaO19.10545|CaO19.3027|IPF3691	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	691700	693499	-	orf19.3029	691700	693499	1	693499	691700	693400	691892		orf19.10547|IPF24295.1|IPF3690.2|Contig4-2530_0009|orf6.7766|CA5060|EHD3|CaO19.3029|CaO19.10547|IPF3690	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	693835	695868	-	orf19.3030	693835	695868	1	695868	693835	695803	694214		orf19.10548|IPF24293.1|IPF8495.2|Contig4-3098_0057|Contig4-3098_0058|orf6.7767|CA5061|ATG21|CaO19.3030|CaO19.10548|IPF8495	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	696021	697046	-	orf19.3031	696021	697046	1	697046	696021	696971	696090		orf19.10549|IPF24325.1|IPF8494.2|Contig4-3098_0056|orf6.7768|CA5062|CaO19.3031|SEC62|CaO19.10549	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	697207	699517	-	orf19.3034	697207	699517	1	699517	697207	699468	697600	RLI1	orf19.10552|IPF24273.1|IPF8493.1|Contig4-3098_0053|orf6.7771|CA5063|CaO19.10552|CaO19.3034|IPF8493	Member of RNase L inhibitor (RLI) subfamily of ABC family; predicted not to be a transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	700408	701191	+	ntar_72	700408	701191	1	700408	701191	700953	701075			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	701406	706195	+	orf19.3035	701406	706195	1	701406	706195	701786	706018		orf19.10553|IPF24378.1|IPF8489.2|Contig4-3098_0051|orf6.7772|CA5064|CaO19.10553|CHD1|CaO19.3035	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	706335	708851	+	orf19.3037	706335	708851	1	706335	708851	706559	708448		orf19.10555|IPF24275.1|IPF3584.2|Contig4-3098_0049|orf6.7774|CA5065|CaO19.10555|PAB1|CaO19.3037|IPF3584	Protein described as poly(A)-binding protein; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); rotein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	708679	708974	-	ntar_73	708679	708974	1	708974	708679					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	709388	712513	+	orf19.3038	709388	712513	1	709388	712513	709532	712198	TPS2	orf19.10556|IPF24244.1|IPF3588.2|Contig4-3098_0048|orf6.7775|CA5066|CaO19.3038|CaO19.10556	Trehalose-6-phosphate (Tre6P) phosphatase; mutation causes heat sensitivity, Tre6P accumulation, and decreased mouse virulence; possible drug target; two conserved phospohydrolase motifs; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	712872	714640	+	orf19.3040	712872	714640	1	712872	714640	713038	714315	EHT1	orf19.10558|IPF24309.1|IPF3589.2|Contig4-3098_0045|orf6.7777|CA5067|CaO19.10558|CaO19.3040|IPF3589	Protein similar to S. cerevisiae Eht1p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	714464	714845	-	ntar_74	714464	714845	1	714845	714464					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	715357	717601	+	orf19.3041	715357	717601	1	715357	717601	715612	717561		orf19.10559|IPF24269.1|IPF3592.2|Contig4-3098_0041|orf6.7778|CA5068|CaO19.10559|CaO19.3041|IPF3592	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	717757	718670	+	orf19.3042	717757	718670	1	717757	718670	717757	718581		orf19.10560|IPF24335.1|IPF3593.2|Contig4-3098_0040|orf6.7779|CA5069|CaO19.3042|CaO19.10560|IPF3593	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	719276	719380	+	tn(guu)3	719276	719380	2	719276|719345	719313|719380				tN(GUU)3.2	tRNA-Asn predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	719550	721040	+	orf19.3043	719550	721040	1	719550	721040	719686	720741		orf19.10561|IPF24317.1|IPF3594.2|Contig4-3098_0039|orf6.7780|CA5070|CaO19.10561|TGL2|CaO19.3043|IPF3594	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	720918	722668	-	orf19.3045	720918	722668	1	722668	720918	722624	721188		orf19.10563|IPF3597|IPF24294.1|IPF3597.2|Contig4-3098_0035|orf6.7782|CA5071|ALD4|CaO19.10563|CaO19.3045	Predicted ORF in Assemblies 19, 20 and 21; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	723058	726898	-	orf19.3047	723058	726898	1	726898	723058	726816	723187		orf19.10565|IPF24394.1|IPF3598.2|Contig4-3098_0033|orf6.7784|CA5072|CaO19.3047|SIP3|CaO19.10565|IPF3598	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	727083	730292	-	orf19.3048	727083	730292	1	730292	727083	730160	727188		orf19.10566|IPF24413.1|IPF3603.2|Contig4-3098_0027|Contig4-3098_0029|Contig4-3098_0031|orf6.7785|CA5073|CaO19.3048|CaO19.10566|IPF3603	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	731103	732512	-	orf19.3049	731103	732512	1	732512	731103	732512	731103		orf19.10567|IPF24302.1|IPF3607.2|Contig4-3098_0024|orf6.7786|CA5074|CaO19.10567|SPS1|CaO19.3049|IPF3607	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	732704	735876	-	orf19.3050	732704	735876	1	735876	732704	735718	732842	AGE1	orf19.10568|orf6.7787|IPF24238.1|IPF3610.2|Contig4-3098_0022|CA5075|CaO19.10568|CaO19.3050|IPF3610	Protein described as a GTPase activator; transcriptionally regulated by iron; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	736661	737895	+	orf19.3051	736661	737895	1	736661	737895	736864	737745		orf19.10569|IPF24324.1|IPF15301.2|Contig4-3098_0020|orf6.7788|CA5076|CaO19.3051|CaO19.10569|IPF15301	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	738246	739128	+	orf19.3052	738246	739128	1	738246	739128	738302	738925	YPT1	orf19.10570|IPF24344.1|IPF15299.2|Contig4-3098_0019|orf6.7789|CA5077|CaO19.10570|CaO19.3052	Functional homolog of S. cerevisiae Ypt1p, which is an essential small Ras-type GTPase involved in protein secretion at ER-to-Golgi; dominant-negative mutation causes SAP secretion defect and accumulation of intracellular secretory vesicles [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	738940	740368	-	orf19.3053	738940	740368	1	740368	738940	739753	739208		orf19.10571|IPF24357.1|IPF15297.1|Contig4-3098_0017|orf6.7790|CA5078|CaO19.10571|CaO19.3053|IPF15297	Predicted ORF in Assemblies 19, 20 and 21; identified in extracts from biofilm and planktonic cells; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	740591	742178	+	orf19.3054	740591	742178	1	740591	742178	740662	742107	RPN3	orf19.10572|IPF24300.1|IPF9265.2|Contig4-3098_0013|Contig4-3098_0015|orf6.7791|CA5079|CaO19.3054|CaO19.10572	Predicted ORF in Assemblies 19, 20 and 21; amphotericin B repressed; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	742271	744160	+	orf19.3055	742271	744160	2	742271|742435	742367|744160	742294	744058		orf19.10573|IPF24291.1|IPF9268.2|Contig4-3098_0012|orf6.7792|CA5080|SRB4|IPF9268.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	743991	744674	-	orf19.3057	743991	744674	1	744674	743991	744628	744122		orf19.10575|IPF24363.1|IPF9270.1|Contig4-3098_0008|orf6.7794|ILM1|CaO19.10575|CaO19.3057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	744743	744960	+	ntar_75	744743	744960	1	744743	744960	744743	744874			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	744807	746468	-	orf19.3058	744807	746468	1	746468	744807	746407	744965		orf19.10576|IPF24298.1|IPF9273.2|Contig4-3098_0006|orf6.7795|CA5081|CaO19.10576|COQ6|CaO19.3058	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	746647	748026	-	orf19.3059	746647	748026	1	748026	746647	747828	746794	SUA71	orf19.10577|IPF24321.1|IPF9274.2|Contig4-3098_0004|orf6.7796|CA5082|CaO19.3059|CaO19.10577|SUA70	Predicted transcriptional regulator; downregulated during planktonic growth, whereas related SUA72 is induced; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	748300	748415	-	tl(uaa)3	748300	748415	2	748415|748345	748377|748300				tL(UAA)3.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	749169	749267	+	orf19.3059.1	749169	749267	1	749169	749267					[NOT TRANSCRIBED?] ORF added to Assembly 21 based on comparative genome analysis; overlaps orf19.3059.2, which is annotated as a blocked reading frame [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	749587	750716	+	orf19.3060	749587	750716	1	749587	750716	749657	750484		orf19.10578|IPF24333.1|IPF9278.1|Contig4-3098_0002|orf6.7797|CA5083|CaO19.10578|SWP1|CaO19.3060|IPF9278	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	750382	751185	-	orf19.3061	750382	751185	1	751185	750382	751158	750607		orf19.10579|IPF24358.1|IPF9279.1|Contig4-3098_0001|orf6.7798|CA5084|IMP1|CaO19.10579|CaO19.3061	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	751370	752645	-	orf19.3061.1	751370	752645	3	752645|752195|751722	752602|752052|751370	752184	751463		orf19.3061.2|CA5086|RPS22B|CA5085|RPS22.exon2|IPF9280.2	Predicted ORF in Assembly 20 and 21; gene has intron; similar to RPS22A/orf19.6265 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	752785	756419	+	orf19.3062	752785	756419	1	752785	756419	752851	756390		orf19.10580|IPF24395.1|IPF20025.1|Contig4-2792_0003|orf6.7799|CA5087|CaO19.3062|CaO19.10580|IPF20025	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	756245	757183	-	orf19.3063	756245	757183	1	757183	756245	757150	756437		orf19.10581|IPF24342.1|IPF9758.1|Contig4-2792_0004|orf6.7800|CA5088|CaO19.10581|DPB3|CaO19.3063|IPF9758	Phosphorylated protein of unknown function; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	757268	758043	-	orf19.3064	757268	758043	1	758043	757268	757871	757365	MRPL27	orf19.10582|IPF24362.1|IPF9757.1|Contig4-2792_0005|orf6.7801|CA5089|CaO19.3064|CaO19.10582	Putative ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	757987	758668	+	orf19.3064.1	757987	758668	1	757987	758668	758360	758599			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	758408	759754	-	orf19.3065	758408	759754	1	759754	758408	759714	758629	DAO1	orf19.10583|IPF24315.1|IPF9755.2|Contig4-2792_0007|Contig4-2792_0008|orf6.7802|CA5090|CaO19.10583|CaO19.3065|IFG4	Putative D-amino acid oxidase; transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	761383	765062	+	orf19.3066	761383	765062	1	761383	765062	761491	764928	ENG1	orf19.10584|IPF9751.2|IPF28933.1|Contig4-2792_0015|Contig4-2792_0016|Contig4-2952_0001|orf6.7803|YNR67|ACF3|orf19.71|DSE4|CaO19.3066|CA5091	Endo-1,3-beta-glucanase required for cell separation after division, orthologous to S. cerevisiae Dse4p; caspofungin repressed; fungal-specific (no human or murine homolog); repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	765307	766648	+	orf19.71	765307	766648	1	765307	766648	765540	766592		Contig4-2952_0001|CaO19.71|GRH1	Predicted ORF in Assembly 19 and 21; deleted from/reinstated in Assembly 20 (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	766708	766795	-	tt(cgu)1	766708	766795	2	766795|766743	766760|766708					tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	767047	771005	-	orf19.1133	767047	771005	1	771005	767047	771005	767142	MSB1	orf19.8726|IPF6172.3|IPF29571.1|Contig4-2952_0004|orf6.1506|CA0525|MSB1.5eoc|IPF6172.2	Predicted ORF in Assemblies 19, 20 and 21; expression in S. cerevisiae flo8 and flo11 mutants suggests a role in regulation of adhesion factors [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	773906	776246	-	orf19.1037	773906	776246	1	776246	773906	775845	774073		orf19.8639|orf19.8640|IPF26266.1|IPF19718.1|IPF26258.1|IPF13751.2|Contig4-2664_0012|orf6.2320|orf6.2319|CA1036|CA1035|orf19.1038|CaO19.1037|CaO19.8639|IFI2.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	776664	779063	-	orf19.1036	776664	779063	1	779063	776664	778650	776803	MNS1	orf19.8638|IPF6163.1|IPF29592.1|Contig4-2952_0008|orf6.2321|CA1037|CaO19.8638|CaO19.1036	Alpha-1,2-mannosidase; ER form is converted by Kex2p to a cytosolic form; processes Man9GlcNAc2 to Man8GlcNAc2 isomer B; member of endoplasmic-reticulum localized glycosyl hydrolase family 47 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	780767	784208	+	orf19.1035	780767	784208	1	780767	784208	781180	784023	WAR1	orf19.8637|IPF6159.2|IPF17784.3|Contig4-2952_0016|orf6.2322|orf6.265|orf6.3216|CA1038|CaO19.1035|IPF6159	Predicted zinc cluster protein involved in resistance to weak organic acids; has similarity to S. cerevisiae War1p, which is a transcription factor involved in the regulation of weak acid stress response genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	784433	785236	+	orf19.1034	784433	785236	1	784433	785236	784529	785080		orf19.8636|IPF18786.2|IPF6156.1|Contig4-2952_0020|orf6.3217|orf6.2323|CA1625|CaO19.1034|IPF6156	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	785107	787009	-	orf19.1033	785107	787009	1	787009	785107	786942	785155	STR2	orf19.8635|IPF26248.1|IPF6155.2|orf6.3218|CA1626|CaO19.1033	Protein not essential for viability; similar to S. cerevisiae Str2p, which is cystathionine gamma-synthase involved in sulfur metabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	788158	790232	+	orf19.1032	788158	790232	2	788158|788486	788375|790232	788364	790210	SKO1	orf19.8634|IPF26249.1|IPF6153.2|Contig4-2301_0003|Contig4-2301_0004|orf6.3219|CA1627|CaO19.8634|CaO19.1032|SKO1.3f|SKO1.3	Putative transcription factor involved in cell wall damage response, similar to S. cerevisiae Sko1p; mutation causes caspofungin sensitivity; induced by osmotic stress via Hog1p; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	790212	794208	-	orf19.1031	790212	794208	1	794208	790212	793652	790431	HMG1	orf19.8633|IPF26280.1|IPF19736.1|Contig4-2301_0005|Contig4-2301_0007|Contig4-2301_0008|orf6.3220|CA1628|CaO19.1031|CaO19.8633	HMG-CoA reductase; enzyme of sterol pathway; inhibited by lovastatin; gene not transcriptionally regulated in response to lovastatin and fluconazole [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	794351	794860	+	ntar_76	794351	794860	1	794351	794860	794614	794736			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	795516	796938	-	orf19.1030	795516	796938	1	796938	795516	796893	795613		orf19.8632|IPF26252.1|IPF14314.2|Contig4-2064_0001|orf6.3221|CA1629|FPR3|CaO19.1030|NPI46	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	797127	798218	+	orf19.1029	797127	798218	1	797127	798218	797227	798159		orf19.8631|IPF26259.1|IPF14315.2|Contig4-2010_0007|orf6.3222|CA1630|RPP1|CaO19.1029	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	798151	799429	-	orf19.1028	798151	799429	1	799429	798151	799429	798251		orf19.8630|IPF19583.2|IPF19582.1|Contig4-2010_0003|Contig4-2010_0005|orf6.3223|orf6.411|CA1631|ELA1|CaO19.1028|IPF19582	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	801713	803065	+	orf19.1027	801713	803065	1	801713	803065	801801	802910	PDR16	orf19.8629|IPF15777.2|IPF19201.1|Contig4-2078_0006|orf6.511|orf6.648|CA6183|CaO19.1027|PDR17	Phosphatidylinositol transfer protein; increased transcription correlates with CDR1 and CDR2 overexpression and azole resistance; induced by fluphenazine, 17-beta-estradiol, ethynyl estradiol, nitric oxide; farnesol-downregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	802911	804131	-	orf19.1026	802911	804131	1	804131	802911	804068	803076		orf19.8628|IPF15779.2|IPF17757.1|Contig4-2078_0005|orf6.512|orf6.647|CA0142|CSL4|CaO19.1026	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	804217	804990	+	orf19.1026.1	804217	804990	1	804217	804990	804272	804541			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	804615	805056	-	ntar_77	804615	805056	1	805056	804615					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	805311	805841	+	ntar_78	805311	805841	1	805311	805841					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	806429	811506	-	orf19.4457	806429	811506	1	811506	806429	811506	806539	BNI4	orf19.11937|orf6.2835|IPF22779.1|IPF11847.2|Contig4-2719_0011|CA1366|CaO19.4457|CaO19.11937|IPF11847	Protein required for wild-type cell wall chitin distribution, morphology, hyphal growth; not essential; similar to S. cerevisiae Bni4p (targeting subunit for Glc7p phosphatase, involved in bud-neck localization of chitin synthase III) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	811835	812024	+	ntar_79	811835	812024	1	811835	812024					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	812650	812939	+	ntar_80	812650	812939	1	812650	812939					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	813478	813663	+	ntar_81	813478	813663	1	813478	813663					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	813797	815724	-	orf19.4459	813797	815724	1	815724	813797	815640	813949		orf19.11939|IPF22769.1|IPF11849.2|Contig4-2719_0006|Contig4-2719_0007|orf6.2833|YNL234W|CA1365|CaO19.4459|CaO19.11939|IPF11849	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ynl234wp, which is a putative heme-binding stress-related protein; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	820980	821342	-	orf19.4461	820980	821342	1	821342	820980	821342	820980		orf19.11941|IPF22784.1|IPF28385.1|orf6.2028|CaO19.4461|CaO19.11941	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	823623	824693	+	orf19.4463	823623	824693	1	823623	824693	823623	824693		orf19.11943|IPF14489.2|IPF19477.2|Contig4-1754_0003|orf6.2030|orf6.29|CA0856|CIS308|CaO19.4463|IFL1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	825278	826123	+	orf19.4464	825278	826123	1	825278	826123	825384	825899	SEN15	orf19.11944|IPF22778.1|IPF14490.2|orf6.2031|CA0857|CaO19.11944|CaO19.4464	Similar to delta subunit of tRNA splicing endonuclease; increased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	825758	828223	-	orf19.4465	825758	828223	1	828223	825758	828046	825995		orf19.11945|IPF22768.1|IPF14493.2|Contig4-1895_0003|orf6.2032|CA0858|CaO19.11945|CaO19.4465|IPF14493	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	828425	830135	-	orf19.4466	828425	830135	1	830135	828425	830116	828572		orf19.11947|IPF14495.2|IPF17107.3|Contig4-1895_0001|orf6.2033|orf6.338|CA0859|CaO19.4466|ERF2|IPF14495|IPF14495.3|IPF14495.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	830194	832025	+	orf19.4467	830194	832025	1	830194	832025	830349	831857		orf19.11948|IPF18468.2|IPF17109.2|orf6.337|orf6.4319|CA2424|CaO19.4467|IPF18468|IPF18468.1	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	832129	832932	+	orf19.4468	832129	832932	1	832129	832932	832188	832697		orf19.11949|IPF19574.1|IPF19575.1|Contig4-3094_0028|orf6.336|orf6.4318|CA2423|CaO19.4468|SDH4|SDH41	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	832810	833902	-	orf19.4470	832810	833902	1	833902	832810	833843	833304		IPF14997.2|IPF28381.1|orf6.4317|CA2422|CaO19.4470|IPF14997.5f|IPF14997	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	834170	837124	-	orf19.4471	834170	837124	1	837124	834170	836915	834306		orf19.11951|IPF22765.1|IPF14998.2|Contig4-2170_0004|orf6.4316|CA2421|CaO19.11951|CaO19.4471|IPF14998	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	837122	837402	+	ntar_82	837122	837402	1	837122	837402					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	837520	837876	+	orf19.4472	837520	837876	1	837520	837876	837520	837837		orf19.11952|IPF22785.1|IPF28386.1|orf6.4315|CaO19.4472|CaO19.11952	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	838135	839080	+	orf19.4473	838135	839080	1	838135	839080	838307	838834		orf19.11953|IPF22777.1|IPF15002.2|Contig4-2170_0002|orf6.4314|CA2420|CaO19.11953|SPC19|CaO19.4473	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	839111	840397	+	orf19.4474	839111	840397	1	839111	840397	839354	840280		orf19.11954|IPF14379|IPF22775.1|IPF14379.2|orf6.4313|CA2419|CaO19.4474|CaO19.11954	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	840347	842011	-	orf19.4475	840347	842011	1	842011	840347	841877	840435	KTR4	orf19.11955|MNT4|IPF22771.1|IPF14377.2|Contig4-2993_0007|orf6.4312|CA2418|CaO19.11955|CaO19.4475	Protein with similarity to mannosyltransferases; induced during cell wall regeneration; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	842723	843898	-	orf19.4476	842723	843898	1	843898	842723	843876	842842		orf19.11957|Contig4-1934_0004|IFD1|IPF22773.1|IPF14375.2|orf6.2004|orf6.4311|CA2417|CaO19.4476|CaO19.11956|IFD6|CA0840|IPF18856.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	844704	845959	-	orf19.4477	844704	845959	1	845959	844704	845857	844844	CSH1	orf6.4310|IFD4|IPF22774.1|IPF14374.2|CA2416|CAgp38|CaO19.11957|CaO19.4477	Member of aldo-keto reductase family, similar to aryl alcohol dehydrogenases; role in adhesion to fibronectin, cell surface hydrophobicity; regulated by temperature, growth phase, benomyl, macrophage interaction; azole resistance associated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	846659	848892	+	orf19.4478	846659	848892	1	846659	848892	846723	848819		orf19.11958|IPF22767.1|IPF17203.2|orf6.4309|CA2415|CaO19.4478|MSD1|CaO19.11958	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	848788	851096	-	orf19.4479	848788	851096	1	851096	848788	851044	848882		orf19.11959|orf19.11960|IPF22770.1|IPF22776.1|IPF13757.2|IPF13756.2|Contig4-2664_0018|Contig4-2664_0021|orf6.4308|orf6.4307|CA2414|CA2413|orf19.4480|IPF13756.3f	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	851871	852302	-	orf19.4481	851871	852302	1	852302	851871	852302	851871	MFALPHA	orf19.11961|orf6.4306|MFalpha1|IPF22780.1|IPF13755.1|MF1|Contig4-2664_0016|CA2412|CaO19.11961|CaO19.4481|IPF13755	Alpha factor mating pheromone precursor; three copies of pheromone that are proteolytically processed by Kex2p and possibly by Orf19.5851p; required for alpha cells to mate; expressed specifically in opaque phase MTLalpha/MTLalpha cells [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	854018	855784	+	orf19.4482	854018	855784	1	854018	855784	854018	855784	IFI3	orf19.11962|orf19.11963|IPF22783.1|IPF19949.1|Contig4-2664_0012|orf6.4304|orf6.4305|CA2411|orf19.4483	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	855759	857193	-	orf19.1039	855759	857193	2	857193|857035	857120|855759	857122	855932		orf19.8641|IPF17890.1|IPF29595.1|Contig4-2664_0010|orf6.2318|CA1034|BET4.3f|BET4.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	857264	858081	+	orf19.1040	857264	858081	1	857264	858081	857326	857970	MAD2	orf19.8642|IPF17891.2|IPF17882.3|Contig4-2664_0009|orf6.2122|orf6.2317|CA1033|CaO19.1040	Protein required for the spindle assembly checkpoint of the cell cycle; necessary for survival in host cell macrophages and for virulence in a mouse model of systemic candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	857780	859468	-	orf19.1041	857780	859468	1	859468	857780	859468	857981		orf19.8643|IPF26251.1|IPF17881.2|Contig4-2664_0008|orf6.2123|CA0918|CaO19.1041|CaO19.8643|IPF17881	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	859474	860615	-	orf19.1042	859474	860615	1	860615	859474	860544	859696	POR1	orf19.8644|IPF26262.1|IPF12994.2|Contig4-2664_0006|orf6.2124|CA0919|VDAC1|CaO19.1042	Mitochondrial outer membrane porin; in detergent-resistant membrane fraction (possible lipid raft component); antigenic in human, mouse; flucytosine-, macrophage-, farnesol- induced; fluconazole, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	860757	863028	+	orf19.1043	860757	863028	1	860757	863028	862110	863027		orf19.8645|IPF26261.1|IPF12992.2|orf6.2125|CA0921|CaO19.1043|CaO19.8645|IPF12992	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	860833	861445	-	ntar_83	860833	861445	1	861445	860833	861245	861084			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	861585	862000	-	ntar_84	861585	862000	1	862000	861585					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	862989	864150	-	orf19.1045	862989	864150	1	864150	862989	864150	863089		orf19.8647|IPF26260.1|IPF12991.1|Contig4-2647_0003|orf6.2127|CA0922|CaO19.8647|IST3|CaO19.1045|IPF12991	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	864056	866828	+	orf19.1047	864056	866828	1	864056	866828	864198	866747	ERB1	orf19.8649|IPF26243.1|IPF12987.2|Contig4-2647_0005|Contig4-2647_0006|orf6.2129|CA0923|CaO19.1047|IPF12987	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); hyphal repressed; macrophage repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	867415	868563	+	orf19.1048	867415	868563	1	867415	868563	867455	868489	IFD6	orf19.8650|Contig4-2647_0009|YPX98|YPL88|IFD1|IPF18856.2|IPF17049.2|Contig4-2647_0010|orf6.2004|orf6.2130|CA0924|CaO19.1048|LPG20|IFD5	Aldo-keto reductase family member; similar to aryl alcohol dehydrogenases, S. cerevisiae Ypl088wp; increased protein correlates with MDR1 overexpression (but not CDR1 or CDR2) in fluconazole-resistant clinical isolates; farnesol regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	868476	869284	-	orf19.1049	868476	869284	1	869284	868476	869162	868578		orf19.8651|IPF18855.2|IPF17050.1|Contig4-2647_0011|orf6.2131|CA0925|CaO19.1049|CaO19.8651|IPF17050	Predicted ORF in Assemblies 19, 20 and 21; expression upregulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	869210	869499	+	ntar_85	869210	869499	1	869210	869499	869210	869353			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	869361	870467	-	orf19.1050	869361	870467	1	870467	869361	870400	869498		orf19.8652|IPF15638.2|IPF17051.3|Contig4-2647_0015|orf6.2006|orf6.2132|CA0841|CaO19.1050|IPF15638	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	870595	871225	-	orf19.1051	870595	871225	1	871225	870595	871141	870746	HTA2	orf19.8653|IPF26275.1|IPF15637.2|Contig4-2647_0017|orf6.2007|CaO19.1051|CaO19.8653	Protein described as histone H2A; farnesol regulated; transcription is downregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	871950	872689	+	orf19.1052	871950	872689	1	871950	872689	872008	872400		orf19.8654|IPF26276.1|IPF15634.2|Contig4-2647_0021|orf6.2008|HTB2|CaO19.1052|CaO19.8654	Predicted histone H2B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	872475	873905	-	orf19.1053	872475	873905	1	873905	872475	873841	872669		orf19.8655|IPF26257.1|IPF15633.2|Contig4-2647_0022|orf6.2009|CA0842|CaO19.8655|BST1|CaO19.1053|IPF15633	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	874058	874432	+	ntar_86	874058	874432	1	874058	874432	874074	874229			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	874659	875581	-	orf19.1054	874659	875581	1	875581	874659	875468	874659		orf19.8656|IPF18853.1|IPF16097.3|Contig4-2647_0024|orf6.2010|orf6.4935|CA0843|CaO19.1054|IPF18853	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	876382	878066	-	orf19.1055	876382	878066	2	878066|877746	877857|876382	877866	876470	CDC3	orf19.8657|IPF16098.2|IPF29594.1|Contig4-2089_0009|orf6.2011|orf6.4934|CA0844	Septin; essential for viability; functional homolog of S. cerevisiae Cdc3p; down-regulation associated with azole resistance; macrophage/pseudohyphal-repressed; virulence-group-correlated expression; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	878711	879534	-	orf19.1057	878711	879534	1	879534	878711	879384	878815		orf19.8659|IPF26268.1|IPF17234.2|Contig4-2089_0004|Contig4-2089_0005|orf6.4932|CA2864|CaO19.1057|CaO19.8659|IPF17234.3f|IPF17234.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	879598	880967	+	orf19.1058	879598	880967	2	879598|880323	880175|880967	879709	880689		orf19.8660|IPF26270.1|IPF20117.1|Contig4-2089_0002|orf6.4931|CA2863|IPF20117	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	880839	881402	-	orf19.1059	880839	881402	1	881402	880839	881330	881013	HHF1	orf19.8661|HHF21|IPF26279.1|IPF7050.1|HHF2|Contig4-1791_0006|orf6.4930|orf6.5621|CA2862|CaO19.1059|CaO19.8661	Putative histone H4; reduced mRNA in homozygous fkh2 null mutant; regulated by Efg1p; fluconazole induced; amphotericin B repressed; farnesol regulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	881425	881950	-	orf19.1060	881425	881950	1	881950	881425	881950	881441			 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	882020	882836	+	orf19.1061	882020	882836	1	882020	882836	882239	882649	HHT21	orf19.8663|IPF26271.1|IPF7053.2|HHT2|Contig4-1791_0001|orf6.4928|orf6.5620|CA2861|CaO19.8663|HHT1|CaO19.1061	Putative histone H3; amphotericin B repressed; regulated by Efg1p; farnesol regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	882993	884228	-	orf19.1062	882993	884228	1	884228	882993	884228	882993		orf19.8664|IPF26254.1|IPF7054.1|Contig4-1791_0008|orf6.4927|CA2860|HRQ1|CaO19.8664|CaO19.1062|IPF7054	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	884332	885852	-	orf19.1063	884332	885852	1	885852	884332	885808	884624		orf19.8665|IPF26256.1|IPF7056.2|Contig4-1738_0001|orf6.4926|CA2859|FMP44|CaO19.1063|CaO19.8665|IPF7056	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	885974	889261	-	orf19.1064	885974	889261	2	889261|888113	889191|885974	889191	886084	ACS2	orf19.8666|IPF26246.1|IPF7057.2|Contig4-2199_0001|orf6.4925|CA2858|CaO19.8666|CaO19.1064	Probable acetyl-CoA synthetase, similar to known fungal acetyl-CoA synthetases; antigenic during murine systemic infection; antigenic in human; upregulated by Efg1p; macrophage-induced protein; soluble protein in hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	888611	889256	+	ntar_87	888611	889256	1	888611	889256					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	889411	890359	+	ntar_88	889411	890359	1	889411	890359					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	890350	892425	-	orf19.1065	890350	892425	1	892425	890350	892386	890449	SSA2	orf19.8667|HS72|SSA1|IPF26247.1|IPF7060.2|Contig4-2688_0006|Contig4-2688_0009|orf6.4924|CA2857|CaO19.1065|CaO19.8667	HSP70 family chaperone; antigenic; role in sensitivity to, import of beta-defensin peptides; ATPase domain binds histatin 5; at surface of hyphae, but not yeast-form cells; farnesol-downregulated in biofilm; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	892794	893010	+	ntar_89	892794	893010	1	892794	893010					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	892889	893973	-	orf19.1066	892889	893973	1	893973	892889	893750	892986		orf19.8668|IPF26264.1|IPF7062.2|Contig4-2688_0004|orf6.4923|CA2856|CaO19.8668|CaO19.1066|IPF7062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	895068	896097	+	orf19.1067	895068	896097	1	895068	896097	895168	895953	GPM2	orf19.8669|IPF26265.1|IPF7065.1|GPM1-2|Contig4-2688_0002|orf6.4922|CA2855|CaO19.1067|CaO19.8669	Protein described as phosphoglycerate mutase; decreased expression in hyphae compared to yeast-form cells; macrophage/pseudohyphal-repressed; induced by high levels of peroxide stress, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	897633	899996	+	orf19.1069	897633	899996	1	897633	899996	898013	899623	RPN4	orf19.8671|IPF26253.1|IPF7070.2|Contig4-2688_0001|Contig4-2992_0023|orf6.4920|CA2854|CaO19.1069	DNA binding protein with Cys2-His2 zinc-finger; putative regulator of proteasome genes; DNA recognition sequence (GAAGGCAAAA) enriched in regions upstream of proteasome genes; induced in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	899958	901500	-	orf19.1070	899958	901500	1	901500	899958	901156	900062		orf19.8672|IPF26255.1|IPF17057.2|Contig4-2882_0025|orf6.4919|CA2853|CaO19.1070|CaO19.8672|IPF17057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	901506	904112	-	orf19.5203	901506	904112	1	904112	901506	903994	901625		orf19.8673|orf19.12670|IPF26263.1|IPF17059.3|IPF7581.3|IPF19744.1|Contig4-2882_0023|orf6.3419|orf6.627|orf6.4918|CA1769|orf19.1071|CaO19.5203|IPF7581.5eoc|IPF7581	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	905022	905647	-	orf19.5201.1	905022	905647	1	905647	905022	905590	905339			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	905978	906648	-	orf19.5201	905978	906648	1	906648	905978	906625	906023		orf19.12668|IPF22029.1|IPF7585.2|Contig4-2882_0015|Contig4-2882_0016|orf6.3417|CA1768|CaO19.12668|RSM18|CaO19.5201|IPF7585	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	906881	908629	+	orf19.5200	906881	908629	1	906881	908629	907197	908141	SIT4	orf19.12667|IPF22025.1|IPF7586.1|Contig4-2882_0013|orf6.3416|CA1767|CaO19.5200|CaO19.12667	Serine/threonine protein phosphatase catalytic subunit; has a role in cell wall maintenance, hyphal growth, and virulence in a mouse systemic infection model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	908512	910887	-	orf19.5198	908512	910887	1	910887	908512	910860	908635	NOP4	orf19.12665|IPF22023.1|IPF7589.1|Contig4-2882_0011|orf6.3414|CA1766|CaO19.12665|CaO19.5198	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	911127	914393	-	orf19.5197	911127	914393	2	914393|913778	914224|911127	914393	911174	APE2	orf19.12664|IPF22021.1|IPF7593.2|Contig4-2882_0008|Contig4-2882_0010|orf6.3413|CA1765|CaO19.5197|CaO19.12664	Neutral arginine-, alanine-, leucine-specific metallo-aminopeptidase; expected to be secreted, purified from cell wall and intracellular fractions; protein repressed during the mating process; Hog1p-, farnesol-induced [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=A]
Ca21chr1	914491	915178	-	orf19.5196	914491	915178	1	915178	914491	915137	914604	ESS1	orf19.12663|PIN1|IPF22030.1|IPF7596.1|Contig4-2882_0006|orf6.3412|CA1764|CaO19.5196|CaO19.12663|IPF7596	Prolyl isomerase (parvulin class); essential; involved in yeast-hyphal switching, Cph1p pathway; has inflexible linker between WW and isomerase domains, unlike human homolog; functional homolog of S. cerevisiae Ess1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	915250	916233	-	orf19.5195	915250	916233	1	916233	915250	916169	915330		orf19.12662|IPF22026.1|IPF7599.1|Contig4-2882_0004|orf6.3411|CA1763|CaO19.12662|URA6|CaO19.5195	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	916433	917397	-	orf19.5194.1	916433	917397	2	917397|917226	917292|916433	917328	916502		IPF22027.1|IPF19928.1|Contig4-2882_0003|CA1762|IPF20014	ORF Predicted by Annotation Working Group; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	916866	917234	+	orf19.6833.2	916866	917234	1	916866	917234	916866	917234		IPF20285.1|IPF20014.1|Contig4-1399_0001	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	917406	918528	-	orf19.6837	917406	918528	2	918528|918280	918352|917406	918388	917556		FMA1|orf19.12660|orf19.14127|IPF7602|IPF22028.1|IPF7602.3|IPF20284.1|IPF3538.2|Contig4-1399_0002|Contig4-2882_0001|Contig4-3051_0002|orf6.3409|orf6.6986|CA1761|orf19.5193|CaO19.6837|CaO19.14127	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	918735	919674	-	orf19.6838	918735	919674	1	919674	918735	919619	918810		orf19.14128|IPF20283.1|IPF3537.1|Contig4-3051_0004|orf6.6987|CA4442|CaO19.14128|CaO19.6838|IPF3537	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	918900	919355	+	ntar_90	918900	919355	1	918900	919355	919044	919211			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	920040	920788	-	orf19.6840	920040	920788	1	920788	920040	920753	920232		orf19.14130|IPF20288.1|IPF3535.2|Contig4-3051_0005|orf6.6989|CA4443|CaO19.14130|CaO19.6840|IPF3535	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	921713	926089	-	orf19.6842	921713	926089	1	926089	921713	925975	921782		orf19.14132|IPF20294.1|IPF3533.2|Contig4-3051_0008|Contig4-3051_0009|orf6.6991|CA4444|TUS1|CaO19.6842|IPF3533	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	926882	928167	+	orf19.6843	926882	928167	1	926882	928167	926944	928065		orf19.14133|IPF20278.1|IPF3530.2|Contig4-3051_0013|orf6.6992|CA4445|CaO19.6843|CaO19.14133|IPF3530	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	929053	930983	+	orf19.6844	929053	930983	1	929053	930983	929160	930812	ICL1	orf19.14134|IPF20271.1|IPF3527.1|Contig4-3051_0014|Contig4-3051_0015|orf6.6993|CA4446|CaO19.6844|CaO19.14134	Isocitrate lyase; enzyme of glyoxylate cycle; required for wild-type virulence in murine systemic infection; no mammalian homolog; gene induced upon phagocytosis by macrophage; farnesol regulated; Pex5p-dependent peroxisomal localization [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	931169	932770	+	orf19.6845	931169	932770	1	931169	932770	931252	932691		orf19.14135|IPF20274.1|IPF3523.2|Contig4-3051_0016|orf6.6994|CA4447|CaO19.14135|CaO19.6845|IPF3523	Putative transcription factor with bZIP DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	932618	933971	-	orf19.6846	932618	933971	2	933971|933802	933882|932618	933901	932824	PHO85	orf19.14136|IPF20279.1|IPF3522.2|Contig4-3051_0017|orf6.6995|CA4448	Functional homolog of S. cerevisiae Pho85p, which is a cyclin-dependent kinase that regulates processes including transcription of PHO genes involved in phosphate metabolism; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	934066	935851	-	orf19.6847	934066	935851	1	935851	934066	935776	934217		orf19.14137|IPF20277.1|IPF3520.2|Contig4-3051_0018|orf6.6996|CA4449|IPF3520	Predicted ORF in Assemblies 19, 20 and 21; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	936043	939060	-	orf19.6848	936043	939060	1	939060	936043	938988	936148	VPS16	orf19.14138|IPF20257.1|IPF3518.1|IPF3518|Contig4-3051_0021|orf6.6997|CA4450|VAM9|CaO19.6848|CaO19.14138	Protein similar to S. cerevisiae Vps16p, which is involved in protein-vacuolar targeting; likely to be essential for growth, based on insertional mutagenesis; downregulated in biofilm or in azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	939148	939559	+	orf19.6849	939148	939559	1	939148	939559	939235	939537	ELC1	orf19.14139|IPF20300.1|IPF3516.1|Contig4-3051_0022|orf6.6998|CA4451|CaO19.6849|CaO19.14139	Transcription is regulated by Nrg1p and Mig1p; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	939951	941861	+	orf19.6850	939951	941861	1	939951	941861	940083	941816		orf19.14140|IPF3514|IPF20269.1|IPF3514.2|Contig4-3051_0023|orf6.6999|CA4452|CaO19.6850|RMD5|CaO19.14140	Putative transcription factor with C3HC4 zinc finger DNA-binding motif; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	941869	943475	-	orf19.6851	941869	943475	1	943475	941869	943413	942016	CHL4	orf19.14141|IPF20273.1|IPF15162.2|Contig4-3051_0024|orf6.7000|CA4453|CaO19.14141|CaO19.6851	Protein described as having role in chromosome segregation; RNA abundance regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	943616	944862	-	orf19.6852	943616	944862	1	944862	943616	944536	943709		orf19.14142|IPF20280.1|IPF15160.2|Contig4-2659_0014|orf6.7001|CA4454|CaO19.14142|CaO19.6852|IPF15160	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	946111	946921	+	orf19.6852.1	946111	946921	1	946111	946921	946320	946508			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	947524	948677	-	orf19.6853	947524	948677	1	948677	947524	948645	947608		orf19.14143|IPF8455.2|IPF8454.2|Contig4-2659_0010|orf6.7002|CA4455|CaO19.14143|CaO19.6853|IPF8454	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	949337	951659	+	orf19.6854	949337	951659	3	949337|949763|950120	949474|949905|951659	949400	951542	ATP1	orf19.14144|orf6.7003|IPF20276.1|IPF8460.2|Contig4-2659_0004|CA4456|CA4457|ATP1.exon3|ATP1.exon2|IPF8458.1|orf19.6853.3	Protein similar to alpha subunit of ATP synthase; antigenic in human, mouse; at surface of hyphae, not yeast-form; soluble protein in hyphae; induced by ciclopirox olamine, ketoconazole, or flucytosine; downregulated by Efg1p, caspofungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	952222	954303	+	orf19.6855	952222	954303	1	952222	954303	952391	954121		orf19.14145|IPF20270.1|IPF8464.2|Contig4-2659_0001|orf6.7004|CA4458|CaO19.6855|IPF8464	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	954057	957837	-	orf19.783	954057	957837	1	957837	954057	957758	954267		orf19.8405|IPF26542.1|IPF10810.3|orf6.4113|CA2277|CaO19.8405|NEO1|CaO19.783|DRS21.5eoc|DRS21|IPF10810.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	958746	960945	+	orf19.782	958746	960945	1	958746	960945	958856	960817		orf19.8404|IPF26517.1|IPF10806.2|Contig4-2404_0004|orf6.4114|CA2278|CaO19.782|CaO19.8404|IPF10806	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	962001	964178	+	orf19.781	962001	964178	1	962001	964178	962001	964178		orf19.8403|IPF26516.1|IPF10804.2|Contig4-2404_0008|orf6.4115|DUR3|CA2279|CaO19.8403|DUR31|CaO19.781	Putative urea transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	965108	970720	+	orf19.780	965108	970720	1	965108	970720	965238	970679	DUR1,2	orf19.8402|IPF26532.1|IPF9766.2|Contig4-2697_0006|Contig4-2697_0007|orf6.4116|CA2280|CaO19.780|DUR1|2|CaO19.8402|"DUR1|2"	Urea amidolyase, contains urea carboxylase and allophanate hydrolase activities needed to hydrolyze urea to CO2; required for utilization of urea as nitrogen source and for hyphal switch in macrophages; transcription is regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	968672	969572	-	ntar_91	968672	969572	1	969572	968672	969065	968943			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	969897	970202	-	ntar_92	969897	970202	1	970202	969897					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	970439	970609	-	ntar_93	970439	970609	1	970609	970439					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	970929	972357	+	orf19.779	970929	972357	1	970929	972357	970989	972230	HAT1	orf19.8401|IPF19108.2|IPF9767.2|Contig4-2697_0005|orf6.4117|orf6.894|CA2281|CaO19.779	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	972556	972824	-	ntar_94	972556	972824	1	972824	972556	972711	972556			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	972925	973053	-	ntar_95	972925	973053	1	973053	972925					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	973505	974851	+	orf19.778	973505	974851	1	973505	974851	973551	974477	PIL1	orf19.8400|orf6.893|EBP1|IPF26526.1|IPF9770.2|Contig4-2697_0002|CA6179|CaO19.778|SLB1|CaO19.8400|IPF9770	Echinocandin-binding protein; localizes to cell surface of hyphae, but not yeast-form cells; biofilm induced; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	975036	976943	-	orf19.776	975036	976943	1	976943	975036	976943	975036		orf19.8398|IPF26519.1|IPF3875.3|Contig4-2653_0014|orf6.1672|orf6.891|CA0630|SPO69|CaO19.776|IPF3875|IPF3875.5eoc|IPF3875.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	977189	980171	-	orf19.775	977189	980171	1	980171	977189	980005	977270		orf19.8397|IPF26510.1|IPF3876.2|Contig4-2653_0010|Contig4-2653_0011|orf6.1671|CA0629|CaO19.775|CaO19.8397|IPF3876	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	980293	981672	-	orf19.773	980293	981672	1	981672	980293	981250	980663		orf19.8395|orf6.1669|IPF17412.3|IPF3878.2|Contig4-2653_0008|orf6.1014|CA0628|CaO19.773|IPF3878	Putative ortholog of S. cerevisiae Rsa3p, which is a nucleolar protein involved in maturation of pre-60S ribosomal particles that interacts with Dbp6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	981949	982540	+	orf19.772.1	981949	982540	1	981949	982540	982240	982461			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	982476	983956	-	orf19.772	982476	983956	1	983956	982476	983901	982615	LYS21	orf19.8394|IPF3880.2|IPF16113.3|LYS22|Contig4-2653_0004|orf6.1013|orf6.3672|CA0261|CaO19.772|LYS212	Putative homocitrate synthase of lysine biosynthesis; expression is increased in a fluconazole-resistant isolate; shows colony morphology-related gene regulation by Ssn6p; ketoconazole-repressed; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	984689	985993	+	orf19.771	984689	985993	1	984689	985993	984797	985843	LPG20	orf19.8393|YPL088|IFD2|IPF16116.2|IPF3883.2|Contig4-2653_0002|orf6.1012|orf6.3671|CA1959|CaO19.771	Protein of aldo-keto reductase family; nonessential; similar to aryl alcohol dehydrogenases, S. cerevisiae Ypl088wp, A. tumefaciens MocA; osmotic stress-induced, correlates with overexpression of MDR1 in fluconazole-resistant isolate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	986188	987602	+	orf19.769	986188	987602	1	986188	987602	986332	987516	IFE1	orf19.8391|IPF16118.2|IPF3885.2|orf6.1009|orf6.1010|orf6.3669|CA1958|YAL061|BDH1|CaO19.769	Protein not essential for viability; similar to S. cerevisiae Yal061wp, which is a putative polyol dehydrogenase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	987472	990585	-	orf19.768	987472	990585	1	990585	987472	990557	987594	SYG1	orf19.8389|IPF16589.3|IPF3887.2|Contig4-2869_0003|orf6.3668|orf6.698|CA1957|CaO19.768|IPF3887	Protein not essential for viability; similar to S. cerevisiae Syg1p, which is a plasma membrane protein that may be involved in signal transduction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	991160	991402	+	ntar_96	991160	991402	1	991160	991402					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	991290	993278	-	orf19.767	991290	993278	1	993278	991290	992851	991691	ERG3	orf19.8387|IPF16592.2|IPF3890.1|Contig4-1987_0003|orf6.3667|orf6.696|CA1956|CaO19.8387|CaO19.767	C-5 sterol desaturase; introduces C-5(6) double bond into episterol in ergosterol biosynthesis; clinically-isolated homozygous null mutants show azole resistance, defects in hyphal growth and virulence; Efg1p-repressed; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	994161	997161	-	orf19.764	994161	997161	1	997161	994161	997102	994445		orf19.8384|orf19.8385|IPF26522.1|IPF26525.1|IPF3897.2|IPF18581.1|Contig4-2890_0002|Contig4-2890_0003|Contig4-2890_0004|orf6.3664|orf6.3665|CA1954|CA1955|orf19.765|IPF3897.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	997283	998122	+	orf19.763	997283	998122	1	997283	998122	997365	998039		orf19.8383|IPF26528.1|IPF3899.1|Contig4-2890_0005|orf6.3663|CA1953|CaO19.763|CBC2|CaO19.8383|IPF3899	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	998186	1000297	-	orf19.762	998186	1000297	1	1000297	998186	1000297	998186		orf19.8382|IPF26518.1|IPF3901.2|Contig4-2890_0006|orf6.3662|CA1952|CaO19.8382|ASM4|CaO19.762|IFP1	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1001612	1003951	+	orf19.761	1001612	1003951	1	1001612	1003951	1001683	1003809	TCO89	orf19.8381|IPF18586.1|IPF3902.3|Contig4-2890_0009|orf6.3640|orf6.3661|CA1933|CaO19.761|IPF18586	Protein described as a homolog of <i>S. cerevisiae</i> Tco89p, which is a component of the TOR C1 complex that is involved in the regulation of growth and cell wall integrity; heterozygous null mutant displays sensitivity to rapamycin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1003815	1004351	-	orf19.760	1003815	1004351	1	1004351	1003815	1004351	1003980		orf19.8380|IPF26539.1|IPF3903.2|Contig4-2890_0010|orf6.3639|CA1932|GON5|CaO19.8380|CaO19.760|IPF3903	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1004493	1007435	+	orf19.759	1004493	1007435	1	1004493	1007435	1004536	1007346		orf19.8379|IPF26509.1|IPF3905.2|Contig4-2890_0011|orf6.3638|CA1931|SEC21|CaO19.759|CaO19.8379|IPF3905	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1007312	1007882	-	orf19.758	1007312	1007882	1	1007882	1007312	1007882	1007511		orf19.8378|IPF26529.1|IPF3906.1|Contig4-2890_0012|orf6.3637|CA1930|CaO19.8378|CaO19.758|IPF3906.3f|IPF3906.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1008273	1008549	-	orf19.757.1	1008273	1008549	1	1008549	1008273	1008446	1008273			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1008926	1011733	+	orf19.757	1008926	1011733	1	1008926	1011733	1009021	1011591		orf19.8377|IPF26511.1|IPF3908.3|Contig4-2890_0014|Contig4-2890_0016|orf6.319|orf6.3636|CA0049|CaO19.757|IPF3908|IPF3908.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1012846	1014905	+	orf19.756	1012846	1014905	1	1012846	1014905	1013057	1014823	SAP7	orf19.8376|IPF19935.1|IPF29700.1|Contig4-2608_0006|orf6.3635|CA1929|CaO19.8376|CaO19.756	Member of the secreted aspartyl proteinase family; expression detected during human oral infection; regulated by Ssn6p; role in murine intravenous infection; induced during, but not required for, murine vaginal infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1014980	1015587	-	orf19.755	1014980	1015587	1	1015587	1014980	1015525	1015163	MRPL37	orf19.8375|IPF26538.1|IPF13404.1|Contig4-2000_0004|orf6.3634|CA1928|CaO19.755|CaO19.8375	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1015803	1017105	+	orf19.754	1015803	1017105	1	1015803	1017105	1015852	1017042	YBN5	orf19.8374|IPF26524.1|IPF13405.2|Contig4-2000_0001|Contig4-2000_0003|orf6.3633|CA1927|CaO19.754|CaO19.8374	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1017567	1020268	+	orf19.753	1017567	1020268	1	1017567	1020268	1017748	1020039		orf19.8373|IPF13407.2|IPF29699.1|Contig4-2145_0002|orf6.3632|CA1926|IPF13407	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1019004	1019515	-	ntar_97	1019004	1019515	1	1019515	1019004	1019208	1019068			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1019840	1021398	-	orf19.752	1019840	1021398	1	1021398	1019840	1021152	1020193		orf19.8372|IPF18587.2|IPF13408.2|Contig4-2145_0003|orf6.3631|orf6.499|CA1925|CaO19.752|IPF18587|IPF18587.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1021587	1022435	-	orf19.751	1021587	1022435	1	1022435	1021587	1022435	1021734		orf19.8371|IPF26527.1|IPF13409.2|Contig4-2145_0005|orf6.500|CA0096|CaO19.751|CaO19.8371|IPF13409|IPF13409.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1021697	1022240	+	ntar_98	1021697	1022240	1	1021697	1022240					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1023282	1023818	-	orf19.750	1023282	1023818	1	1023818	1023282	1023818	1023282		orf19.8370|IPF26531.1|IPF15177.2|Contig4-1816_0001|orf6.1207|CA0365|CaO19.750|CaO19.8370|IPF15177	Predicted ORF in Assemblies 19, 20 and 21; exogenously expressed protein is a substrate for Kex2p processing in vitro; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1024839	1025118	-	ntar_99	1024839	1025118	1	1025118	1024839					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1028014	1032719	-	orf19.48	1028014	1032719	1	1032719	1028014	1032522	1028341		orf19.7710|orf19.8369|orf6.534|IPF17790.3|IPF29973.1|IPF26514.1|IPF17515.2|Contig4-1613_0005|orf6.202|orf6.1208|CA0030|CA0103|orf19.749|IPF17790.5eoc|IPF17790|IPF17790.2	Predicted ORF in Assemblies 19, 20 and 21; likely to be essential for growth, based on an insertional mutagenesis strategy; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1033784	1035958	-	orf19.50	1033784	1035958	1	1035958	1033784	1035890	1033908		orf19.7711|IPF27199.1|IPF11181.2|Contig4-2627_0007|orf6.4556|CA2601|CaO19.50|CaO19.7711|IPF11181	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1033908	1034142	+	ntar_100	1033908	1034142	1	1033908	1034142					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1036817	1041036	+	orf19.51	1036817	1041036	1	1036817	1041036	1036865	1040956		orf19.7712|IPF27203.1|IPF11177.2|Contig4-2627_0005|orf6.4555|CA2600|CLU1|CaO19.7712|CaO19.51|IPF11177	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1041891	1044002	-	orf19.52	1041891	1044002	1	1044002	1041891	1043587	1042025		orf19.7713|IPF27200.1|IPF11176.2|Contig4-2627_0002|orf6.4554|CA2599|CaO19.52|MMT1|CaO19.7713|IPF11176	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1044139	1045645	-	orf19.53	1044139	1045645	1	1045645	1044139	1045557	1044424		orf19.7714|IPF27201.1|IPF13142.2|Contig4-2469_0006|orf6.4553|CA2598|CaO19.53|UAF22|CaO19.7714|IPF13142	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1048035	1050539	+	orf19.54	1048035	1050539	1	1048035	1050539	1048370	1050334	RHD1	orf19.7715|IPF27198.1|IPF13148.2|Contig4-2469_0001|orf6.4552|CA2597|BMT2|WRY7|CaO19.7715|CaO19.54|IFQ3	Putative beta-mannosyltransferase, required for the addition of beta-mannose to the acid-labile fraction of cell wall phosphopeptidomannan; member of a 9-gene family; transcriptionally regulated on yeast-hyphal and white-opaque switches [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1050374	1051742	-	orf19.55	1050374	1051742	1	1051742	1050374	1051487	1050513		orf19.7716|IPF19547.2|IPF19546.1|orf6.4551|orf6.56|CA2596|CaO19.55|IPF19546	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1051980	1053940	-	orf19.56	1051980	1053940	1	1053940	1051980	1053794	1052052	ARG2	orf19.7717|IPF19457.2|IPF12823.1|Contig4-2475_0007|orf6.4550|orf6.57|CA2595|CaO19.56	Putative enzyme of arginine biosynthesis; transcription of genes of arginine biosynthesis pathway, except for ARG2, is induced upon phagocytosis by macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1054013	1054892	-	orf19.57	1054013	1054892	2	1054892|1054653	1054738|1054013	1054857	1054162	PSF2	orf19.7718|IPF27202.1|IPF12824.1|Contig4-2475_0005|orf6.4549|CA2594|CaO19.57|IPF12824	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1055273	1057832	-	orf19.58	1055273	1057832	1	1057832	1055273	1057731	1055371	RRP6	orf19.7719|IPF19452.2|IPF12827.2|Contig4-2475_0001|orf6.4548|orf6.74|CA2593|CaO19.58	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1057940	1059376	+	orf19.59	1057940	1059376	1	1057940	1059376	1058028	1059233	REI1	orf19.7720|IPF12828.3|IPF18447.1|orf6.4547|orf6.73|CA2592|CaO19.59|IPF18447	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1059206	1062020	-	orf19.4064	1059206	1062020	1	1062020	1059206	1061940	1059283	GPI7	orf19.7721|orf19.11547|IPF23187.1|IPF17402.2|IPF27205.1|IPF18448.1|Contig4-2941_0010|orf6.4546|orf6.3021|CA1488|CA2591|orf19.60|IPF17402.5eoc|IPF17402	Protein involved in attachment of GPI-linked proteins to cell wall; member of major facilitator superfamily; phosphodiesterase/nucleotide pyrophosphatase domain; similar to S. cerevisiae Gpi7p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1064026	1064495	-	ntar_101	1064026	1064495	1	1064495	1064026					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1064065	1065792	+	orf19.4063	1064065	1065792	1	1064065	1065792	1064065	1065792	GPT1	orf19.11546|IPF19374.1|IPF10519.2|Contig4-2526_0008|orf6.248|orf6.249|orf6.3020|CA1487|CaO19.4063	GABA/polyamine transporter; 9 to 11 membrane spanning segments; complements GABA uptake defect of an S. cerevisiae uga4 put4 gap1 triple mutant; complements growth of an S. cerevisiae spe1 mutant under polyamine limitation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1064628	1064814	-	ntar_102	1064628	1064814	1	1064814	1064628					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1065092	1065395	-	ntar_103	1065092	1065395	1	1065395	1065092	1065395	1065213			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1066130	1067428	+	orf19.4062	1066130	1067428	1	1066130	1067428	1066173	1067288		orf19.11544|IPF23189.1|IPF10521.2|Contig4-2526_0006|orf6.3019|CA1486|UAF21|CaO19.4062|CaO19.11544|IPF10521	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1067465	1068500	+	orf19.4061	1067465	1068500	1	1067465	1068500	1067600	1068403		orf19.11543|IPF23191.1|IPF20082.1|Contig4-1646_0002|Contig4-2526_0004|orf6.3018|CA1485|CaO19.11543|CaO19.4061|IPF20082	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1068391	1069805	-	orf19.4060	1068391	1069805	1	1069805	1068391	1069691	1068579	ARO4	orf19.11542|IPF23190.1|IPF10524.2|Contig4-1646_0003|Contig4-2526_0003|orf6.3017|CA1484|CaO19.11542|CaO19.4060	3-Deoxy-D-arabinoheptulosonate-7-phosphate synthase; enzyme of aromatic amino acid biosynthesis; GCN-regulated; feedback-inhibited by tyrosine when produced in S. cerevisiae; fungal-specific; Aro3p and Aro4p catalyze the same reaction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1070107	1072182	+	orf19.4059	1070107	1072182	1	1070107	1072182	1070570	1071850		orf19.11541|IPF7656.2|IPF10526.2|Contig4-2526_0001|orf6.3016|orf6.785|CA1483|YHC3|CaO19.4059	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1072230	1072670	+	orf19.4057	1072230	1072670	1	1072230	1072670	1072230	1072670		IPF7657.1|IPF28537.1|Contig4-1726_0002|Contig4-1812_0004|orf6.3014|orf6.784|CaO19.4057	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1082643	1083998	+	orf19.4056	1082643	1083998	1	1082643	1083998	1082678	1083949	GAT2	orf19.11538|IPF23188.1|IPF7666.2|Contig4-2593_0012|orf6.2451|CA1120|CaO19.11538|CaO19.4056|IPF7666	Putative DNA-binding transcription factor; similar to S. cerevisiae Gat2p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1085006	1085239	-	orf19.450	1085006	1085239	1	1085239	1085006	1085239	1085006		orf19.8080|IPF26889.1|IPF17483.2|Contig4-2593_0010|orf6.3089|CA1537|CaO19.8080|CaO19.450|IPF17483	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1088500	1088751	-	ntar_104	1088500	1088751	1	1088751	1088500					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1092420	1094144	-	orf19.449	1092420	1094144	1	1094144	1092420	1093862	1092666		orf19.8079|IPF17500.2|IPF5915.2|Contig4-2840_0016|orf6.1739|orf6.237|YKR70|CA0670|CaO19.449|IPF5915	Predicted ORF in Assemblies 19, 20 and 21; possible phosphatidyl synthase; transcription reduced upon yeast-hyphal switch; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1094621	1096060	-	orf19.448	1094621	1096060	1	1096060	1094621	1096011	1094731		orf19.8078|IPF18257.2|IPF5918.2|Contig4-2840_0014|orf6.1738|orf6.6516|CA0669|CaO19.448|IPF5918	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1096326	1097020	+	ntar_105	1096326	1097020	1	1096326	1097020	1096592	1096789			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1096874	1097700	-	orf19.446.2	1096874	1097700	2	1097700|1097396	1097550|1096874	1097577	1097191		CA0668|IPF18910.3f	Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1097828	1099123	-	orf19.446.1	1097828	1099123	2	1099123|1098498	1098601|1097828	1098637	1098305		CA6175|IPF5921	Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1098793	1099230	+	ntar_106	1098793	1099230	1	1098793	1099230					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1099190	1100243	-	orf19.446	1099190	1100243	1	1100243	1099190	1100199	1099306		orf19.8076|IPF26878.1|IPF5922.2|Contig4-2840_0009|orf6.6515|CA4068|CaO19.446|CaO19.8076|IPF5922	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1100579	1101071	+	ntar_107	1100579	1101071	1	1100579	1101071	1100946	1101071			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1101103	1101252	+	ntar_108	1101103	1101252	1	1101103	1101252					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1101132	1102511	-	orf19.445	1101132	1102511	1	1102511	1101132	1102445	1101288		orf19.8075|IPF26872.1|IPF5924.2|Contig4-2840_0008|orf6.6514|CA4067|CaO19.445|CaO19.8075|IPF5924	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1102531	1103144	-	orf19.444	1102531	1103144	1	1103144	1102531	1103095	1102658		orf19.8074|IPF26891.1|IPF5925.2|Contig4-2840_0006|orf6.6513|CA4066|CaO19.8074|CaO19.444|IPF5925	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1103248	1104072	+	orf19.443	1103248	1104072	1	1103248	1104072	1103345	1103932		orf19.8073|IPF26885.1|IPF5926.2|Contig4-2840_0004|orf6.6512|CA4065|CaO19.8073|RPC25|CaO19.443	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1103812	1105455	-	orf19.441	1103812	1105455	1	1105455	1103812	1105392	1104058	RPT1	orf19.8071|IPF26869.1|IPF5928.2|Contig4-2840_0003|orf6.6510|CA4064|CaO19.8071|CaO19.441	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1104299	1104913	+	orf19.442	1104299	1104913	1	1104299	1104913	1104299	1104913		IPF26884.1|IPF5927.1|orf6.6511	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1105617	1107601	-	orf19.440	1105617	1107601	1	1107601	1105617	1107598	1105682	SDH1	orf19.8070|IPF26863.1|IPF5931.2|Contig4-2840_0002|CA4063|CaO19.440|CaO19.8070|SDH11|orf6.6509	Protein described as mitochondrial succinate dehydrogenase; macrophage/pseudohyphal-induced; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1107960	1108970	-	orf19.439	1107960	1108970	1	1108970	1107960	1108916	1108197		orf19.8069|IPF26880.1|IPF5933.2|orf6.6508|CA4062|CaO19.439|MHR1|CaO19.8069|IPF5933	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1108007	1108305	+	ntar_109	1108007	1108305	1	1108007	1108305	1108042	1108305			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1109113	1111003	+	orf19.438	1109113	1111003	1	1109113	1111003	1109186	1110934		orf19.8068|IPF26866.1|IPF5935.2|Contig4-2492_0006|orf6.6507|CA4061|CaO19.438|CaO19.8068|IPF5935	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1111151	1113339	+	orf19.437	1111151	1113339	1	1111151	1113339	1111223	1113181	GRS1	orf19.8067|IPF26861.1|IPF5937.1|Contig4-2492_0003|orf6.6506|CA4060|CaO19.8067|CaO19.437	Putative tRNA-Gly synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1113160	1115503	-	orf19.434	1113160	1115503	1	1115503	1113160	1115479	1113371	PRD1	orf19.8064|IPF5940.2|IPF29825.1|Contig4-2492_0001|Contig4-2492_0002|orf6.6503|CA4059|CaO19.8064|CaO19.434	Transcription is regulated by Nrg1p, Mig1p, and Tup1p; Hog1p-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1116103	1116195	+	tp(ugg)1	1116103	1116195	2	1116103|1116160	1116138|1116195				tP(UGG)1.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1116240	1118100	-	orf19.433	1116240	1118100	1	1118100	1116240	1118038	1116296		orf19.8063|IPF7717.2|IPF29829.1|Contig4-2853_0014|orf6.6502|CA4058|CaO19.433|IPF7717	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1116288	1116632	+	ntar_110	1116288	1116632	1	1116288	1116632	1116456	1116632			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1118214	1119699	-	orf19.432	1118214	1119699	1	1119699	1118214	1119669	1118293		orf19.8062|IPF26870.1|IPF7719.2|Contig4-2853_0010|orf6.6501|CA4057|CaO19.8062|CaO19.432|IPF7719	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1118304	1118562	+	ntar_111	1118304	1118562	1	1118304	1118562	1118407	1118562			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1118634	1119036	+	ntar_112	1118634	1119036	1	1118634	1119036					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1119939	1122636	-	orf19.431	1119939	1122636	1	1122636	1119939	1122299	1119972		ZCF2|orf19.8061|IPF26856.1|IPF7721.2|Contig4-2853_0009|orf6.6500|CA4056|CaO19.8061|CaO19.431|IPF7721	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1123131	1123950	+	orf19.430	1123131	1123950	1	1123131	1123950	1123222	1123881		orf19.8060|IPF26882.1|IPF7723.2|Contig4-2853_0006|orf6.6499|CA4055|CaO19.430|YPT522|CaO19.8060	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1123724	1125796	-	orf19.429	1123724	1125796	1	1125796	1123724	1125735	1123924		orf19.8059|IPF26865.1|IPF7724.2|Contig4-2853_0005|orf6.6498|CA4054|TRF4|CaO19.429|CaO19.8059	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1125958	1128162	-	orf19.428	1125958	1128162	1	1128162	1125958	1128162	1125979		orf19.8058|IPF26859.1|IPF7725.2|Contig4-2853_0002|Contig4-2853_0004|orf6.6497|CA4053|CaO19.428|CaO19.8058|IKS1	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1126265	1126466	+	ntar_113	1126265	1126466	1	1126265	1126466					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1128375	1133437	-	orf19.427	1128375	1133437	1	1133437	1128375	1133437	1128440		orf19.8057|IPF10231.2|Contig4-2820_0001|Contig4-2820_0003|orf6.6496|CA4052|CaO19.8057|CaO19.427|IPF10231.3f|IPF10231.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1133510	1135593	-	orf19.426	1133510	1135593	1	1135593	1133510	1135564	1133510		orf19.8056|IPF26862.1|IPF10233.2|Contig4-2820_0006|orf6.6495|CA4051|CaO19.426|CaO19.8056|IPF10231.5f|IPF10231.exon1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1135789	1136407	-	orf19.425	1135789	1136407	1	1136407	1135789	1136394	1135801		orf19.8055|IPF10482.exon2|IPF26883.1|IPF20007.1|Contig4-2820_0007|orf6.6494|CA4050|CaO19.8055|CaO19.425|IPF20007	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1136436	1137156	-	orf19.424	1136436	1137156	1	1137156	1136436	1137135	1136581	TRP99	orf19.8054|orf6.6493|IPF10482.2|IPF19148.2|Contig4-2820_0008|orf6.770|CA4049|AHP12|CaO19.424|IPF10482|IPF10482.exon1	Protein described as thioredoxin peroxidase/alkyl hydroperoxide reductase; transcriptionally regulated by iron; expression greater in low iron; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1137212	1137964	+	orf19.423	1137212	1137964	1	1137212	1137964	1137366	1137923		orf19.8053|IPF26887.1|IPF10483.2|Contig4-2820_0009|orf6.6492|orf6.771|CA0179|DCP1|CaO19.423	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1138223	1140710	+	orf19.422	1138223	1140710	1	1138223	1140710	1138330	1140585	SPT20	orf19.8052|IPF18537.2|IPF10486.2|orf6.3893|orf6.6491|orf6.772|CA0180|CaO19.422	Protein described as a transcription factor; downregulated upon adherence to polystyrene; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1141047	1142880	-	orf19.419	1141047	1142880	1	1142880	1141047	1142880	1141123		orf19.8049|IPF10490.2|IPF29828.1|Contig4-2233_0002|orf6.3896|CA2124|CaO19.419|IPF10490	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1142135	1142629	+	orf19.420	1142135	1142629	1	1142135	1142629	1142135	1142629		IPF26886.1|IPF10489.2|orf6.3895	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1143893	1148396	+	orf19.418	1143893	1148396	1	1143893	1148396	1144029	1148327	KOG1	orf19.8048|IPF4893.2|orf6.3897|YHR186|CA2125|CaO19.418|CaO19.8048|IPF4893	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; heterozygous null mutant displays sensitivity to rapamycin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1148988	1150350	+	orf19.417	1148988	1150350	1	1148988	1150350	1149163	1150212		orf19.8047|IPF26873.1|IPF4896.2|Contig4-3004_0025|orf6.3898|CA2126|CaO19.8047|MTM1|CaO19.417|IPF4896	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1150320	1151467	-	orf19.416	1150320	1151467	1	1151467	1150320	1151467	1150346		orf19.8046|IPF26874.1|IPF4897.2|Contig4-3004_0024|orf6.3899|CA2127|CaO19.416|CaO19.8046|IPF4897	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1151619	1152563	-	orf19.415	1151619	1152563	1	1152563	1151619	1152503	1151757		orf19.8045|IPF26879.1|IPF4898.1|Contig4-3004_0021|orf6.3900|CA2128|CaO19.415|CaO19.8045|IPF4898	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1152799	1155235	+	orf19.414	1152799	1155235	1	1152799	1155235	1152818	1155091		orf19.8044|IPF26851.1|IPF4899.1|Contig4-3004_0020|orf6.3901|CA2129|CaO19.8044|RSM22|CaO19.414|IPF4899	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1155065	1155981	-	orf19.413.1	1155065	1155981	1	1155981	1155065	1155839	1155591	RPS27A	IPF4901.2|IPF29837.1|Contig4-3004_0018|CA2130	Predicted ribosomal protein S27; ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1157565	1158002	+	ntar_114	1157565	1158002	1	1157565	1158002	1157725	1157907			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1158458	1158691	-	ntar_115	1158458	1158691	1	1158691	1158458					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1158687	1161263	+	orf19.413	1158687	1161263	1	1158687	1161263	1158929	1161004		orf19.8043|orf6.2094|IPF4902.1|IPF29827.1|Contig4-3004_0013|CA0897|CaO19.413|IPF4902	Transcription is positively regulated by Sfu1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1161098	1163002	-	orf19.412	1161098	1163002	2	1163002|1162819	1162930|1161098	1162939	1161330		orf19.8042|IPF4903.2|Contig4-3004_0010|orf6.2095|CA0898|SSH1.3f|SSH1.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1163383	1164837	-	orf19.411	1163383	1164837	1	1164837	1163383	1164670	1163651		orf19.8041|IPF4905|orf6.2096|IPF26877.1|IPF4905.2|Contig4-3004_0007|CA0899|CaO19.8041|CaO19.411	Protein described as similar to GTPase regulators; possibly spurious ORF (Annotation Working Group prediction); transcriptionally regulated by iron; expression greater in low iron; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1163572	1163775	+	ntar_116	1163572	1163775	1	1163572	1163775	1163628	1163768			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1165074	1165380	+	ntar_117	1165074	1165380	1	1165074	1165380					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1165950	1166791	-	ntar_1426	1165950	1166791	2	1166791|1166462	1166716|1165950					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1166924	1167711	+	orf19.410.3	1166924	1167711	2	1166924|1167176	1167092|1167711	1166924	1167627		IPF26888.1|IPF4908.2|Contig4-3004_0003|CA0054|RIB4|RIB4.3	Lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, DMRL synthase); catalyzes the penultimate step in the synthesis of riboflavin [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1168044	1168149	+	tn(guu)2	1168044	1168149	2	1168044|1168114	1168081|1168149				tN(GUU)2.2	tRNA-Asn predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1168236	1168338	+	tn(guu)1	1168236	1168338	2	1168236|1168303	1168273|1168338				tN(GUU)1.2	tRNA-Asn predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1168890	1168962	+	tt(agu)1	1168890	1168962	1	1168890	1168962				tT(AGU)1.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1169086	1170573	-	ntar_118	1169086	1170573	1	1170573	1169086	1170573	1170313			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1169252	1173967	+	orf19.2495	1169252	1173967	1	1169252	1173967	1169252	1173967	GSL1	orf19.10031|FKS1|IPF24875.1|IPF4913.2|GSL22|Contig4-2966_0001|Contig4-2966_0003|orf6.6176|CA3812|CaO19.2495|CaO19.10031	Subunit of beta-1,3-glucan synthase; 10 predicted membrane-spanning regions; caspofungin induced; mRNA abundance declines after yeast-to-hyphal transition; similar to S. cerevisiae Fks3p; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	1174270	1177116	+	orf19.2494	1174270	1177116	1	1174270	1177116	1174271	1175737		orf19.10030|IPF24837.1|IPF9233.1|Contig4-2966_0004|orf6.6175|CA3811|CaO19.2494|PET112|CaO19.10030	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1175824	1177077	-	orf19.2492	1175824	1177077	1	1177077	1175824	1177077	1175824	STE3	orf19.10028|IPF24844.1|IPF9230.2|Contig4-2966_0005|orf6.6173|CA3810|CaO19.10028|CaO19.2492|IPF9230	Protein similar to S. cerevisiae Ste3p, the receptor for a-factor mating pheromone; alpha mating-type-specific transcription [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1177497	1181017	-	orf19.2489	1177497	1181017	1	1181017	1177497	1180920	1177591		orf19.10025|IPF24889.1|IPF9227.2|Contig4-2966_0006|orf6.6170|CA3809|CaO19.2489|KAP123|CaO19.10025	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1181039	1182441	-	orf19.2488	1181039	1182441	1	1182441	1181039	1182403	1181204	FAL1	orf19.10024|IPF24847.1|IPF9226.2|Contig4-2966_0007|orf6.6169|CA3808|CaO19.10024|CaO19.2488	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1182511	1183402	+	orf19.2487	1182511	1183402	1	1182511	1183402	1182555	1183313		orf19.10023|IPF24863.1|IPF9225.2|Contig4-2966_0009|orf6.6168|CA3807|CaO19.2487|CaO19.10023|IPF9225	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1183302	1187736	-	orf19.2485	1183302	1187736	1	1187736	1183302	1187646	1183366		orf19.10021|IPF24880.1|IPF9224.2|Contig4-2966_0010|Contig4-2966_0011|orf6.6166|CA3806|CaO19.2485|NUP170|CaO19.10021|IPF9224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1188173	1189603	+	orf19.2484	1188173	1189603	1	1188173	1189603	1188231	1189484		orf19.10020|IPF24843.1|IPF12403.2|Contig4-2966_0014|orf6.6165|CA3805|CaO19.2484|CaO19.10020|IPF12403	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1189424	1190085	-	orf19.2483	1189424	1190085	1	1190085	1189424	1190013	1189582	RIM1	orf19.10019|IPF24873.1|IPF12405.2|Contig4-2966_0015|orf6.6164|CA3804|CaO19.10019|CaO19.2483	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1190292	1191038	-	orf19.2481	1190292	1191038	1	1191038	1190292	1191038	1190292		orf19.10017|IPF24864.1|IPF12407.1|Contig4-2966_0017|orf6.6162|CA3803|CaO19.10017|CaO19.2481|IPF12407	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1191283	1192452	+	orf19.2480.1	1191283	1192452	3	1191283|1191617|1191749	1191442|1191664|1192452	1191631	1192122	AUT7	IPF12408.2|IPF7188.3|Contig4-2966_0018|orf6.109|CA3802|AUT7.exon2	ORF Predicted by Annotation Working Group; macrophage/pseudohyphal-repressed; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1192486	1194234	-	orf19.2479	1192486	1194234	1	1194234	1192486	1194234	1192561	UGA4	orf19.10016|IPF7194.1|IPF12411.3|Contig4-2471_0004|orf6.107|orf6.6161|CA3801|UGA40|CaO19.2479	Putative gamma-aminobutyric acid/polyamine permease; nitrogen catabolite repressed gene, induced in absence of preferred N sources; transcriptionally induced upon phagocytosis by macrophage; gene regulation by nitrogen source requires Gat1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1195183	1197114	+	orf19.2478.1	1195183	1197114	3	1195183|1195817|1196132	1195228|1195907|1197114	1195221	1196758		IPF7197.2|IPF16942.2|Contig4-2471_0002|orf6.4956|CA3800|RPL7A.3f|RPL7A.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1196975	1198230	-	orf19.2478	1196975	1198230	1	1198230	1196975	1198188	1197046		orf19.10015|IPF7198.1|IPF16941.2|Contig4-2471_0001|orf6.4957|orf6.6160|CA3799|CaO19.2478|IPF7198	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1198336	1203538	-	orf19.2476	1198336	1203538	1	1203538	1198336	1203457	1198403		orf19.10013|IPF24871.1|IPF7201.2|Contig4-2471_0005|orf6.4959|orf6.6159|CA2884|CaO19.2476|IPF7201	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1203590	1203921	+	ntar_119	1203590	1203921	1	1203590	1203921	1203590	1203859			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1203688	1204754	-	orf19.2475	1203688	1204754	1	1204754	1203688	1204573	1204178	PGA26	orf19.10012|orf6.4960|IPF24884.1|IPF7204.2|Contig4-2954_0019|CA2885|CaO19.10012|CaO19.2475|IPF7204	Putative GPI-anchored protein of unknown function; transcriptionally regulated by iron; expression greater in high iron; induced during cell wall regeneration; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1205343	1205560	+	ntar_120	1205343	1205560	1	1205343	1205560					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1205966	1207881	-	orf19.2474	1205966	1207881	1	1207881	1205966	1207750	1206098	PRC3	orf19.10011|IPF7205.2|IPF29082.1|Contig4-2954_0018|orf6.230|orf6.4961|CA0035|CPY2|CaO19.2474	Transcription is regulated by Nrg1p and Mig1p; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1208447	1210541	+	orf19.2473	1208447	1210541	1	1208447	1210541	1208547	1210451		orf19.10010|IPF24831.1|IPF7207.2|IPF7207|Contig4-2954_0014|orf6.4962|CA2886|CaO19.2473|CaO19.10010	Decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1210663	1211092	+	orf19.2472.1	1210663	1211092	1	1210663	1211092	1210733	1210942			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1210934	1211792	-	orf19.2472	1210934	1211792	1	1211792	1210934	1211754	1211062		orf19.10009|IPF24865.1|IPF13631.1|Contig4-2954_0012|orf6.4963|CA2887|CaO19.2472|CaO19.10009|IPF13631	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1211870	1212493	+	orf19.2471	1211870	1212493	1	1211870	1212493	1211899	1212375	GIM5	orf19.10008|IPF24870.1|IPF13630.1|Contig4-2954_0011|orf6.4964|CA2888|CaO19.2471|CaO19.10008	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed gene and macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1212358	1213445	-	orf19.2469	1212358	1213445	1	1213445	1212358	1213425	1212409	RAD10	orf19.10006|IPF24857.1|IPF13628.1|Contig4-2954_0010|orf6.4966|CA2889|CaO19.2469|ERC1|CaO19.10006|IPF13628	Ortholog of S. cerevisiae RAD10, an endonuclease involved in nucleotide excision repair; null mutant is extremely sensitive to UV irradiation; transcription is downregulated in alkaline conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1213982	1214902	+	orf19.2468	1213982	1214902	1	1213982	1214902	1213982	1214902		orf19.10005|IPF6685.3|IPF13626.2|Contig4-2954_0008|orf6.250|orf6.4967|CA2890|TMT1|CaO19.2468|IPF13626	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1215228	1216520	+	orf19.2467	1215228	1216520	1	1215228	1216520	1215353	1216498	PRN1	orf19.10004|IPF13624.2|IPF6686.2|Contig4-2954_0007|orf6.251|orf6.4968|CA2891|IFS4|PIRIN-1|CaO19.2467	Protein with similarity to pirins; increased transcription is observed upon benomyl treatment and in response to alpha pheromone in SpiderM medium; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1216778	1218096	+	orf19.2465	1216778	1218096	1	1216778	1218096	1216800	1218017	POL32	orf19.10002|IPF24845.1|IPF6688.2|Contig4-2954_0004|orf6.4970|CA2892|CaO19.2465|CaO19.10002|IPF6688	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1218205	1219372	+	orf19.2463	1218205	1219372	1	1218205	1219372	1218316	1219317	PRN2	orf19.10000|IPF24858.1|IPF6690.2|Contig4-2954_0003|orf6.4972|CA2893|CaO19.10000|CaO19.2463|IFS3	Predicted ORF in Assemblies 19, 20 and 21; similar to pirin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1219643	1220882	+	orf19.2462	1219643	1220882	1	1219643	1220882	1219834	1220814	PRN3	orf19.9999|IPF24854.1|IPF6691.1|Contig4-2954_0001|orf6.4973|CA2894|CaO19.2462|IFS2	Predicted ORF in Assemblies 19, 20 and 21; similar to pirin; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1221320	1222663	+	orf19.2461	1221320	1222663	1	1221320	1222663	1221590	1222576	PRN4	orf19.9998|IPF24852.1|IPF6694.2|Contig4-2709_0011|orf6.4974|CA2895|IFS1|CaO19.2461|CaO19.9998	Protein with similarity to pirins; increased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1223688	1225228	+	orf19.2460	1223688	1225228	1	1223688	1225228	1223738	1224793		orf19.9997|IPF6696.2|IPF18403.2|Contig4-2709_0008|orf6.3562|orf6.4975|CA1873|CaO19.2460|IPF6696	Predicted ORF in Assemblies 19, 20 and 21; exogenously expressed protein is a substrate for Kex2p processing in vitro; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1226421	1229872	+	orf19.2459	1226421	1229872	1	1226421	1229872	1226736	1229654		orf19.9996|IPF24817.1|IPF6700.2|Contig4-2709_0005|orf6.3561|CA1872|CaO19.2459|CaO19.9996|IPF6700	Putative protein of unknown function; mRNA binds to She3p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1231114	1233040	+	orf19.2458	1231114	1233040	1	1231114	1233040	1231428	1232969		orf19.9995|IPF18595.1|IPF6704.2|Contig4-2709_0001|orf6.266|orf6.3559|orf6.3560|CA1871|SIP5|CaO19.2458|IPF16981|CA1870|IPF16981.exon2|IPF16981.2|IPF16981.exon1	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1236231	1238527	+	orf19.2457	1236231	1238527	1	1236231	1238527	1236354	1238429		orf19.9993|IPF15822.2|IPF19473.2|orf6.34|orf6.3558|CA1869|CaO19.2457|IPF15822	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1238405	1242092	-	orf19.2455	1238405	1242092	1	1242092	1238405	1241973	1238578		orf19.9992|IPF18597.2|IPF24840.1|IPF29084.1|IPF14501.3|Contig4-2518_0001|orf6.1539|orf6.33|orf6.3557|orf6.373|CA0547|CA1868|orf19.2456|IPF14501.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1242794	1243551	-	ntar_121	1242794	1243551	1	1243551	1242794					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1243990	1244422	+	ntar_122	1243990	1244422	1	1243990	1244422					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1244534	1247879	+	orf19.2454	1244534	1247879	1	1244534	1247879	1244696	1247716	PHO87	orf19.9990|orf6.1540|PHO98|IPF19824.2|IPF14853.2|Contig4-2200_0003|Contig4-2200_0004|Contig4-2200_0005|orf6.104|orf6.293|CA0548|CaO19.2454|CA0015|PHO87.5eoc|IPF19824.1	Protein similar to phosphate permeases; transcription is negatively regulated by Rim101p at pH 8; expression is regulated upon white-opaque switching; caspofungin repressed; biofilm-regulated; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1248065	1249905	-	orf19.2452	1248065	1249905	1	1249905	1248065	1249509	1248262		orf19.9988|orf6.1246|IPF14850.2|IPF14849.3|Contig4-2200_0007|Contig4-2200_0010|orf6.294|CA0046|CaO19.2452|IPF14850	Transcriptionally regulated by iron; expression greater in high iron; downregulated in core caspofungin response; ketoconazole-repressed; shows colony morphology-related gene regulation by Ssn6p; possibly subject to Kex2p processing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1251400	1253230	+	orf19.2451	1251400	1253230	1	1251400	1253230	1251599	1252987	PGA45	orf19.9987|IPF19428.2|IPF14109.2|Contig4-1947_0002|orf6.1247|orf6.143|CA0380|CaO19.2451|IPF14109	Cell wall protein; putative GPI-anchor; downregulated in core caspofungin response; Hog1p-induced; regulated by Ssn6p; Mob2p-dependent hyphal regulation; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1254890	1256662	+	orf19.2449	1254890	1256662	1	1254890	1256662	1254890	1256662		orf19.9985|IPF14107.2|IPF7471.3|Contig4-2783_0009|orf6.1249|CA0788|CaO19.2449|IPF14107|orf6.1922	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1257029	1259362	+	orf19.2447	1257029	1259362	1	1257029	1259362	1257154	1259244		orf19.9983|IPF24830.1|IPF7472.1|Contig4-2783_0008|orf6.1920|CA0787|CaO19.2447|CaO19.9983|IPF7472	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1259137	1260575	-	orf19.2446	1259137	1260575	1	1260575	1259137	1260405	1259335		orf19.9982|IPF24855.1|IPF7473.1|Contig4-2783_0007|orf6.1919|CA0786|CaO19.9982|CaO19.2446|IPF7473	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1261730	1263376	+	orf19.2445	1261730	1263376	1	1261730	1263376	1261730	1263376		orf19.9981|IPF24835.1|IPF7474.3|DIP51|Contig4-2783_0004|orf6.1918|orf6.3623|DIP5|CA1922|DIP52|CaO19.2445|IPF7474.2	[NOT TRANSCRIBED?] Putative dicarboxylic amino acid permease; fungal-specific (no human or murine homolog); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1263826	1264960	+	orf19.2444	1263826	1264960	1	1263826	1264960	1263887	1264819	CHS7	orf19.9980|IPF24859.1|IPF7475.2|Contig4-2783_0003|orf6.3622|CA1921|CaO19.9980|CaO19.2444|IPF7475	Protein required for wild-type chitin synthase III activity; similar to (but not functional homolog of) S. cerevisiae Chs7p, which effects ER export of Chs3p; induced in homozygous cyr1 null mutant hyphae and ras1 yeast-form cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1265312	1267673	+	orf19.2443	1265312	1267673	1	1265312	1267673	1265549	1267582	RGD1	orf19.9979|orf6.3621|IPF24828.1|IPF7476.2|Contig4-2783_0001|CA1920|CaO19.2443|CaO19.9979|IPF7476	Protein described as a GTPase activator; transcriptionally regulated by iron; expression greater in low iron; alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1267600	1268514	-	orf19.2442	1267600	1268514	1	1268514	1267600	1268401	1267601		orf19.9978|IPF24861.1|IPF7477.2|IPF7477|orf6.3620|CA1919|CaO19.9978|CaO19.2442	Decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1268576	1271291	+	orf19.2440	1268576	1271291	1	1268576	1271291	1268667	1271219		orf19.9976|orf19.9977|IPF24850.1|IPF24836.1|IPF7479.2|IPF7478.2|orf6.3618|orf6.3619|CA1917|CA1918|orf19.2441|IPF7479.3f	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1271173	1271745	-	orf19.2439.1	1271173	1271745	2	1271745|1271579	1271685|1271173	1271693	1271352		IPF24823.1|IPF16566.2|CA1916|IPF16566.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1271967	1272685	-	orf19.2439	1271967	1272685	1	1272685	1271967	1272642	1272208		orf19.9975|IPF24877.1|IPF16565.1|Contig4-2388_0002|orf6.3617|CA1915|CaO19.2439|ACP12|CaO19.9975|IPF16565	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1272835	1273510	+	orf19.2438	1272835	1273510	1	1272835	1273510	1272885	1273427		orf19.9974|IPF24866.1|IPF16564.1|Contig4-2388_0004|orf6.3616|CA1914|CaO19.9974|MRPS12|CaO19.2438|IPF16564	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1273410	1274594	-	orf19.2437	1273410	1274594	1	1274594	1273410	1274555	1273515	ARC35	orf19.9973|IPF24856.1|IPF16563.2|Contig4-2388_0006|orf6.3615|CA1913|CaO19.2437|CaO19.9973	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1274799	1277841	-	orf19.2436	1274799	1277841	1	1277841	1274799	1277567	1274919		orf19.9972|IPF24821.1|IPF13772.2|Contig4-2388_0008|orf6.3614|CA1912|SKY1|CaO19.9972|CaO19.2436	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1278550	1280804	-	orf19.2435	1278550	1280804	1	1280804	1278550	1280738	1278633	MSI3	orf19.9971|orf6.760|SSE1|IPF24829.1|IPF13776.3|orf6.3613|CA1911|CaO19.2435|IPF13776.2	Protein of the HSP70 family; antigenic; functional homolog of S. cerevisiae Msi3p; physically interacts (by 2-hybrid) with Cgr1p; transcriptionally regulated by iron; expression greater in high iron; farnesol downregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1281093	1283039	-	orf19.2434	1281093	1283039	1	1283039	1281093	1282994	1281198	NPL4	orf19.9970|IPF19684.1|IPF15600.2|Contig4-2898_0001|orf6.1397|orf6.761|CA0175|CaO19.2434	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1283124	1283839	-	orf19.2433	1283124	1283839	1	1283839	1283124	1283769	1283140		orf19.9969|IPF17719.1|IPF15601.1|Contig4-2898_0002|orf6.1396|orf6.762|CA0458|CaO19.2433|IPF15601	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1284338	1285921	-	orf19.2432	1284338	1285921	2	1285921|1284420	1284440|1284338	1285460	1284338	HAC1	orf19.9968|IPF24851.1|IPF15604.1|Contig4-2898_0003|orf6.1395|CA0457|CaO19.2432|CaO19.9968|IPF15604	Putative transcription factor involved in unfolded protein response and control of morphology; transcript undergoes atypical splicing at C terminus under ER stress; induced during mating and by caspofungin; mRNA binds She3p [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1286014	1286424	-	orf19.2431	1286014	1286424	1	1286424	1286014	1286424	1286083		orf19.9967|IPF24888.1|IPF29100.1|orf6.1394|CaO19.2431|CaO19.9967	Dubious open reading frame, not conserved in Candida species; transcription is induced in response to alpha pheromone in SpiderM medium; mRNA binds She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1286804	1287167	+	ntar_123	1286804	1287167	1	1286804	1287167	1287018	1287167			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1288962	1289687	+	orf19.2430	1288962	1289687	1	1288962	1289687	1288962	1289687		orf19.9966|IPF19414.2|IPF16122.1|Contig4-2898_0010|orf6.1393|orf6.169|LPF19|CaO19.2430	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1289718	1291073	+	orf19.2429	1289718	1291073	1	1289718	1291073	1289718	1291073		orf19.9965|IPF24841.1|IPF19572.1|IPF19573.1|Contig4-2898_0011|orf6.333|orf6.1392|CA0053|orf19.380|CaO19.9965|LPF18|CaO19.2429	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1291710	1292041	-	ntar_124	1291710	1292041	1	1292041	1291710					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1292869	1293864	+	orf19.2661	1292869	1293864	1	1292869	1293864	1292869	1293864	TLO34	IPF11534.1|IPF17380.2|Contig4-1945_0002|Contig4-2584_0004|Contig4-2753_0010|Contig4-2898_0012|Contig4-2956_0007|orf6.334|orf6.434|orf6.1466|CA0498|CA0078|orf19.631|orf19.381|CaO19.2661|CTA218|CTA211.3f	Non-telomeric member of a family of telomere-proximal genes of unknown function; predicted N-terminus is extended, relative to that of other family members [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1293072	1293677	-	orf19.2662	1293072	1293677	1	1293677	1293072	1293677	1293072		IPF11536.1|orf6.1467|CaO19.2662|ATC218	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1294318	1297038	+	orf19.2663	1294318	1297038	1	1294318	1297038	1294913	1296667		orf19.9388|IPF25503.1|IPF14507.3|IPF11533.1|Contig4-2753_0011|orf6.3436|orf6.1468|CA0499|orf19.1829|LPF20|CaO19.2663|IFA9	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1296767	1297043	-	ntar_125	1296767	1297043	1	1297043	1296767					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1297193	1298596	+	orf19.1828	1297193	1298596	1	1297193	1298596	1297270	1298319	BUD16	orf19.9387|IPF25500.1|IPF14508.2|Contig4-2753_0012|orf6.3435|CA1781|CaO19.1828|CaO19.9387|IPF14508	Protein similar to S. cerevisiae Bud16p; induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1298462	1299820	-	orf19.1827	1298462	1299820	1	1299820	1298462	1299820	1298462		orf19.9386|IPF25499.1|IPF14509.2|Contig4-2753_0014|orf6.3434|CA1780|CaO19.9386|CaO19.1827|IPF14509	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1300582	1302956	-	orf19.1826	1300582	1302956	1	1302956	1300582	1302625	1300757	MDM34	orf19.9385|IPF25496.1|IPF14510.2|Contig4-2618_0001|Contig4-2753_0016|orf6.3433|CA1779|CaO19.1826|CaO19.9385|IPF14510	Putative transcription factor with zinc finger DNA-binding motif; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1306306	1308657	+	orf19.1825	1306306	1308657	1	1306306	1308657	1306306	1308531		orf19.9384|IPF13810|IPF25495.1|IPF13810.2|Contig4-2618_0004|orf6.1511|orf6.3432|CA1778|CaO19.9384|CaO19.1825|IPF13810.3	[NOT TRANSCRIBED?] Protein not essential for viability; filament induced; regulated by Nrg1p, Rfg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1309559	1310488	+	orf19.1824	1309559	1310488	1	1309559	1310488	1309559	1310488	PGA50	orf19.9383|IPF25501.1|IPF14706.2|Contig4-2618_0008|orf6.3431|CA1777|CaO19.9383|CaO19.1824|IPF14706	Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1310758	1313731	+	orf19.1823	1310758	1313731	1	1310758	1313731	1310872	1313613		orf19.9382|IPF14704|IPF25493.1|IPF14704.2|Contig4-2618_0011|Contig4-2618_0014|orf6.1325|orf6.3430|CA1776|CaO19.1823	Predicted ORF in Assemblies 19, 20 and 21; transcription is downregulated in response to treatment with ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1313907	1314266	+	ntar_126	1313907	1314266	1	1313907	1314266					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1314494	1317025	-	orf19.1822	1314494	1317025	1	1317025	1314494	1317025	1314494	UME6	orf19.9381|IPF15273.2|IPF14703.2|Contig4-1197_0003|orf6.1326|orf6.3429|CA0423|CaO19.1822|IPF15273	Transcription factor; required for wild-type hyphal extension, virulence; zinc cluster DNA-binding motif; similar to S. cerevisiae Ume6p, which is a meiotic regulator; alkaline upregulated; filament induced; regulated by Nrg1p, Tup1p, RFG1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1324514	1324825	-	orf19.1821	1324514	1324825	1	1324825	1324514	1324825	1324514		orf19.9380|IPF25509.1|IPF29296.1|orf6.1209|CaO19.9380|CaO19.1821	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1334471	1334753	+	ntar_127	1334471	1334753	1	1334471	1334753					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1337508	1340227	+	orf19.177	1337508	1340227	1	1337508	1340227	1337672	1340068		orf19.13660|orf19.7810|IPF27140.1|IPF15923.2|IPF20924.1|IPF11945.2|orf6.679|orf6.6040|CA0151|CA3703|orf19.6281|IPF15923.5eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1340369	1340722	+	orf19.6280	1340369	1340722	1	1340369	1340722	1340369	1340722		orf19.13659|IPF20954.1|IPF27787.1|orf6.6039|CaO19.13659|CaO19.6280	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1343993	1344599	+	ntar_128	1343993	1344599	1	1343993	1344599					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1344770	1348341	+	orf19.6277	1344770	1348341	1	1344770	1348341	1344908	1348267		orf19.13656|orf19.13658|IPF19586.1|IPF19587.2|orf6.501|orf6.6038|CA3701|CA3702|orf19.6279|IPF11936.3f|orf6.6036	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1350390	1350606	+	ntar_129	1350390	1350606	1	1350390	1350606					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1350853	1353640	+	orf19.6276	1350853	1353640	1	1350853	1353640	1350853	1353474		orf19.13655|IPF20884.1|IPF4859.2|Contig4-2377_0008|orf6.6035|CA3700|CaO19.6276|CaO19.13655|IPF4859	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1354052	1355749	+	orf19.6275	1354052	1355749	1	1354052	1355749	1354052	1355749		orf19.13654|IPF20904.1|IPF4860.1|Contig4-2377_0002|Contig4-2377_0004|orf6.6034|CA3699|CaO19.13654|CaO19.6275|IPF4860	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1356578	1357373	-	orf19.6274	1356578	1357373	1	1357373	1356578	1357330	1356803	PBR1	orf19.13653|IPF20933.1|IPF4861.1|Contig4-2683_0016|orf6.6033|CA3698|CaO19.6274|CaO19.13653|IPF4861	Protein required for cohesion, adhesion, and biofilm formation; induced by alpha pheromone in white cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1358770	1359775	-	orf19.6273	1358770	1359775	1	1359775	1358770	1359770	1359447		orf19.13652|IPF4865.1|IPF27790.1|Contig4-2683_0013|orf6.6032|CaO19.13652|CaO19.6273	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1359971	1361046	+	orf19.6272	1359971	1361046	1	1359971	1361046	1360018	1360794		orf19.13651|IPF4866.1|IPF27771.1|Contig4-2683_0012|orf6.6031|CA3697|YUH1|CaO19.6272|IPF4866	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1360739	1363376	-	orf19.6271	1360739	1363376	1	1363376	1360739	1363202	1361070		orf19.13650|IPF4868.1|IPF27760.1|Contig4-2683_0009|orf6.6030|CA3696|CaO19.6271|IPF4868	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1364433	1367174	+	orf19.6269	1364433	1367174	1	1364433	1367174	1364477	1367062		orf19.13648|orf19.13649|IPF20912.1|IPF4873.2|Contig4-2683_0004|Contig4-2683_0006|orf6.6028|orf6.6029|CA3694|CA3695|orf19.6270|IPF4872.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1367091	1369525	-	orf19.6268	1367091	1369525	1	1369525	1367091	1369348	1367174		orf19.13647|IPF20895.1|IPF4874.2|Contig4-2683_0002|orf6.6027|CA3693|CaO19.13647|CaO19.6268|IPF4874	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1370850	1372217	-	orf19.6267	1370850	1372217	1	1372217	1370850	1372217	1370850		orf19.13646|IPF4876|IPF20913.1|IPF4876.2|Contig4-2747_0018|orf6.6026|CA3692|CaO19.13646|HRQ3|CaO19.6267	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1372774	1375485	-	orf19.6266	1372774	1375485	1	1375485	1372774	1375483	1372868		orf19.13645|IPF20885.1|IPF4880.2|Contig4-2747_0014|Contig4-2747_0015|Contig4-2747_0016|orf6.6025|CA3691|CaO19.6266|CaO19.13645|IPF4880	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1375744	1376785	-	orf19.6265.1	1375744	1376785	2	1376785|1376301	1376732|1375744	1376741	1375913	RPS14B	IPF20952.1|IPF4881.1|Contig4-2747_0012|CA3690|RPS14	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1377035	1377529	-	orf19.6265	1377035	1377529	1	1377529	1377035	1377498	1377106	RPS22A	orf19.13644|IPF20939.1|IPF4882.2|Contig4-2747_0010|orf6.6024|CA3689|RPS22|CaO19.6265|CaO19.13644	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1377722	1378625	+	orf19.6264.4	1377722	1378625	2	1377722|1378119	1377887|1378625	1377882	1378268		IPF20908.1|IPF27767.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1378483	1379422	-	orf19.6264.3	1378483	1379422	2	1379422|1379188	1379270|1378483	1379293	1378685		IPF20936.1|IPF4885.1|Contig4-2747_0006|orf6.6072|CA3688|YIP3|YIP3.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1379833	1380253	-	ntar_130	1379833	1380253	1	1380253	1379833	1380144	1379923			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1380365	1381401	+	orf19.6264	1380365	1381401	1	1380365	1381401	1380462	1381178		orf19.13643|IPF20926.1|IPF4889.2|Contig4-2747_0003|orf6.6023|CA3687|CaO19.13643|CaO19.6264|IPF4889	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1381182	1382664	-	orf19.6263	1381182	1382664	1	1382664	1381182	1382602	1381205		orf19.13642|IPF4890.2|IPF18757.2|Contig4-2747_0002|orf6.6022|CA3686|CaO19.13642|CaO19.6263|IPF4890	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1382841	1389718	-	orf19.6261	1382841	1389718	1	1389718	1382841	1389718	1382897	BPH1	orf19.13640|IPF20927.1|IPF19723.1|Contig4-2747_0021|orf6.111|orf6.2456|orf6.301|CA1123|CaO19.6261|IPF19723	Protein not essential for viability; similar to S. cerevisiae Bph1p, which is a putative ortholog of human Chediak-Higashi syndrome protein and murine beige gene implicated in disease syndromes involving defective lysosomal trafficking [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1390173	1394538	-	orf19.6260	1390173	1394538	1	1394538	1390173	1394401	1390283		orf19.13639|IPF19349.2|IPF12859.2|Contig4-2735_0006|orf6.2457|CA1124|UBP12|CaO19.6260	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1394979	1396220	-	orf19.6259	1394979	1396220	1	1396220	1394979	1396220	1395099		orf19.13638|IPF12718.3|IPF12854.2|Contig4-2735_0003|orf6.2458|orf6.654|CA1125|CaO19.6259|RRP43	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1397888	1404671	+	orf19.6257	1397888	1404671	1	1397888	1404671	1398250	1404630	GLT1	orf19.13636|IPF20929.1|IPF19715.2|orf6.2272|orf6.655|CA1010|CaO19.6257|GLT1.3eoc|IPF19715.1	Putative glutamate synthase; alkaline downregulated; transcription is downregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1404849	1406663	+	orf19.6255	1404849	1406663	1	1404849	1406663	1404890	1406203		orf19.13634|IPF20914.1|IPF14084.1|Contig4-2748_0008|orf6.2270|CA1009|CaO19.13634|CaO19.6255|IPF14084	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1406978	1408563	+	orf19.6254	1406978	1408563	1	1406978	1408563	1407331	1408368	ANT1	orf19.13633|IPF20920.1|IPF14083.2|Contig4-2748_0006|orf6.2269|CA1008|CaO19.6254|CaO19.13633|IPF14083	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1409014	1409688	+	orf19.6253	1409014	1409688	1	1409014	1409688	1409046	1409483	RPS23A	orf19.13632|IPF13519.1|IPF14082.3|Contig4-2748_0005|orf6.1570|orf6.2268|CA0567|CaO19.6253|RPS23|RPS23.5f	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1409669	1411539	-	orf19.6252	1409669	1411539	1	1411539	1409669	1411044	1409842		orf19.13630|IPF20915.1|IPF13522.2|Contig4-2748_0004|orf6.1568|CA0566|CaO19.13630|CaO19.6252|IPF13522	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1411643	1413043	+	orf19.6250	1411643	1413043	1	1411643	1413043	1411731	1412774		orf19.13628|IPF20917.1|IPF13526.2|Contig4-2748_0002|orf6.1566|CA0565|SCD6|CaO19.6250|CaO19.13628|IPF13526	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1413053	1415600	-	orf19.6249	1413053	1415600	1	1415600	1413053	1415515	1413089	HAK1	orf19.13627|IPF20886.1|IPF9136.3|Contig4-2748_0001|Contig4-2748_0010|orf6.1565|orf6.2201|CA0966|IPF9136|IPF9136.5eoc|IPF9136.2	Putative potassium transporter; similar to Schwanniomyces occidentalis Hak1p; amphotericin B induced; transcriptionally induced upon phagocytosis by macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1417268	1417969	-	orf19.6248	1417268	1417969	1	1417969	1417268	1417969	1417268		orf19.13626|IPF20925.1|IPF9139.2|Contig4-2382_0002|orf6.2200|CA0965|CaO19.6248|IPF9139	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1418502	1421375	+	orf19.6247	1418502	1421375	1	1418502	1421375	1418596	1421211		orf19.13625|IPF20880.1|IPF9141.2|Contig4-2635_0014|orf6.2199|CA0964|CTF4|CaO19.6247|IPF9141	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1421138	1421826	-	ntar_131	1421138	1421826	1	1421826	1421138	1421581	1421438			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1421770	1422680	+	orf19.6246	1421770	1422680	1	1421770	1422680	1421911	1422477		orf19.13624|IPF20930.1|IPF9143.1|Contig4-2635_0010|orf6.2198|CA0963|CaO19.6246|NAT3|CaO19.13624|IPF9143	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1422244	1422496	-	ntar_132	1422244	1422496	1	1422496	1422244					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1422967	1424785	+	orf19.6245	1422967	1424785	1	1422967	1424785	1422978	1424678		orf19.13623|IPF19079.2|IPF9145.2|Contig4-2635_0007|orf6.2197|orf6.985|CA0962|CaO19.6245|IPF9145	Predicted ORF in Assemblies 19, 20 and 21; regulated by osmotic stress (via Hog1p) and oxidative stress (Hog1p- and Cap1p-independent); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1424364	1424585	-	ntar_133	1424364	1424585	1	1424585	1424364	1424585	1424364			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1425038	1427781	+	orf19.6244	1425038	1427781	1	1425038	1427781	1425396	1427717		orf19.13622|IPF9146.2|IPF18817.2|Contig4-2635_0006|orf6.2196|orf6.672|orf6.984|CA0251|IFH1|CaO19.6244|IPF9146	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1427944	1431149	+	orf19.6243	1427944	1431149	1	1427944	1431149	1427968	1431030	VPS34	orf19.13621|IPF17928.3|IPF17276.2|Contig4-2635_0002|Contig4-2635_0003|orf6.5115|orf6.673|orf6.983|CA0149|CaO19.6243	Autophosphorylated phosphatidylinositol 3-kinase, class III, required for wild-type vesicle transport, hyphal growth, adherence to fibroblasts, and virulence in mouse systemic infection; low abundance mRNA, growth-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1431455	1432983	+	orf19.6242	1431455	1432983	1	1431455	1432983	1432024	1432983		IPF15741.2|IPF19190.1|orf6.5116|orf6.674|CA3003|CYK3|CaO19.6242|IPF15741.5f|IPF15741	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1432991	1435243	+	orf19.6240	1432991	1435243	1	1432991	1435243	1433503	1435086		orf19.13620|IPF15741.2|IPF19687.2|orf6.904|orf6.5116|CA6304|CA6308|orf19.6241|IPF15741.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1435382	1436528	+	orf19.6239	1435382	1436528	1	1435382	1436528	1435444	1436475		orf19.13619|IPF15293.1|IPF15740.2|Contig4-1996_0006|orf6.5117|orf6.903|CA3004|KIN28|CaO19.6239	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1436376	1437759	-	orf19.6238	1436376	1437759	1	1437759	1436376	1437711	1436509		orf19.13618|IPF20916.1|IPF15294.2|Contig4-1996_0005|orf6.5118|orf6.902|CA0218|CaO19.6238|IPF15294	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1439922	1441494	+	orf19.6237	1439922	1441494	1	1439922	1441494	1440150	1440860	RAC1	orf19.13617|IPF19967.1|IPF27772.1|Contig4-2906_0002|Contig4-2906_0003|orf6.5119|CA3005|CaO19.6237|CDC422|CaO19.13617|CC43	G-protein of RAC subfamily; required for embedded filamentous growth, but not for serum-induced hyphal growth; dynamic localization at plasma membrane; similar to, but not interchangeable with, Cdc42p; lacks S. cerevisiae homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1441238	1442176	-	orf19.6236	1441238	1442176	1	1442176	1441238	1442123	1441494		orf19.13616|IPF12152.1|IPF12514.2|Contig4-2906_0005|orf6.5120|CA3006|CaO19.6236|IPF12152	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1442300	1442943	+	orf19.6235	1442300	1442943	1	1442300	1442943	1442352	1442738		orf19.13615|IPF12150.1|IPF12515.2|Contig4-2906_0006|orf6.1583|orf6.5121|CaO19.6235	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1442798	1444495	-	orf19.6234	1442798	1444495	1	1444495	1442798	1444495	1442891		orf19.13614|IPF12148.1|IPF12516.1|Contig4-2906_0007|orf6.1584|orf6.5122|CA3007|CaO19.6234|IPF12148	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1444504	1446115	+	orf19.6233	1444504	1446115	1	1444504	1446115	1444504	1446027		orf19.13613|IPF12147.2|IPF12518.1|Contig4-1351_0001|Contig4-1351_0002|Contig4-2906_0010|orf6.1585|orf6.5123|CA3008|CaO19.6233|IPF12147	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1446885	1449859	+	orf19.6232	1446885	1449859	1	1446885	1449859	1447186	1449687	NPR1	orf19.13612|IPF20888.1|IPF12521.2|Contig4-2906_0015|orf6.1586|orf6.5124|CA0576|CaO19.6232	Predicted ORF in Assemblies 19, 20 and 21; induced in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1449779	1450444	-	orf19.6231	1449779	1450444	1	1450444	1449779	1450368	1449937	MRPL19	orf19.13611|IPF14569.2|IPF12523.3|Contig4-2906_0017|orf6.1587|orf6.5125|CA3009|CaO19.6231	Protein described as a ribosomal protein; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1450611	1451861	+	orf19.6230	1450611	1451861	1	1450611	1451861	1450648	1451823		orf19.13610|IPF14568.2|IPF18936.2|Contig4-2906_0018|orf6.5126|CA3010|CaO19.6230|RAI1|CaO19.13610|IPF14568	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1453252	1455073	+	orf19.6229	1453252	1455073	1	1453252	1455073	1453415	1454872	CAT1	orf19.13609|CCT1|CCT|orf6.5127|CTA1|IPF20907.1|IPF20124.1|Contig4-1984_0001|Contig4-2906_0020|CA3011|CaO19.13609|CaO19.6229	Catalase; role in resistance to oxidative stress, neutrophils, peroxide; role in murine systemic virulence; regulated by iron, ciclopirox olamine, fluconazole, growth, carbon source, pH, Rim101p, Ssn6p, Hog1p, farnesol, core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1455437	1456730	+	orf19.6227	1455437	1456730	1	1455437	1456730	1455604	1456596		orf19.13607|IPF20919.1|IPF14013.2|Contig4-1851_0006|Contig4-1851_0008|orf6.5129|CA3012|CaO19.13607|CaO19.6227|IPF14013	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1456893	1458031	+	ntar_134	1456893	1458031	1	1456893	1458031					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1457026	1458175	-	orf19.6225.1	1457026	1458175	1	1458175	1457026	1457571	1457278		IPF20970.1|IPF20125.1|Contig4-1851_0004|CA3013|PET117	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1458782	1461611	+	orf19.6225	1458782	1461611	1	1458782	1461611	1459337	1461391	PCL7	orf19.13605|IPF11915.2|IPF18998.2|Contig4-2759_0013|orf6.1290|orf6.5131|CA3014|CaO19.6225|IPF11915	Protein described as cyclin-like, possible Pho85p cyclin; hyphal downregulated; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1462779	1464272	+	orf19.6224	1462779	1464272	1	1462779	1464272	1462779	1464272		orf19.13604|IPF20910.1|IPF11914.1|Contig4-2759_0009|orf6.1289|CA0401|CaO19.6224|RSB14|CaO19.13604|RTA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1464285	1464830	-	orf19.6222.1	1464285	1464830	1	1464830	1464285	1464706	1464503			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1465246	1468296	-	orf19.6222	1465246	1468296	4	1468296|1468187|1465496|1465329	1468248|1465580|1465409|1465246	1468296	1465246	SPO22	orf19.13603|IPF7423.3|IPF27762.1|Contig4-2759_0006|orf6.4534|orf6.1288|CA6303|CA0400|orf19.6223|IPF7423.5f	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Spo22p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1468392	1469495	-	orf19.6220.4	1468392	1469495	2	1469495|1468865	1469308|1468392	1469344	1468534		IPF20959.1|IPF7424.1|Contig4-2759_0004|CA2579|RPL34B.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1469531	1470343	-	orf19.6220.3	1469531	1470343	3	1470343|1470184|1470034	1470263|1470124|1469531	1470343	1469706	MMD1	IPF20961.1|IPF7427.2|CA2578|MMD1.3	ORF Predicted by Annotation Working Group; macrophage-downregulated protein abundance [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1470501	1473313	-	orf19.6220	1470501	1473313	1	1473313	1470501	1473250	1470554		orf19.13601|IPF20879.1|IPF7430.2|orf6.4532|CA2577|CaO19.13601|CAF130|CaO19.6220|IPF7430	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1473411	1475045	-	orf19.6219	1473411	1475045	1	1475045	1473411	1474919	1473564		orf19.13600|IPF20909.1|IPF7432.2|Contig4-2632_0002|orf6.4531|CA2576|CaO19.6219|CaO19.13600|IPF7432	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1475533	1479772	+	orf19.6217	1475533	1479772	1	1475533	1479772	1475717	1479514	PGA63	orf19.13598|orf19.13597|IPF20958.1|IPF7439.2|Contig4-2632_0006|orf6.4528|orf6.4529|CA2575|orf19.6216|CaO19.13598|SEC31|CaO19.6217	Putative protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1479644	1483225	-	orf19.6214	1479644	1483225	1	1483225	1479644	1483049	1479813	ATC1	orf19.13595|IPF19760|ATH1|IPF20966.1|IPF19760.1|Contig4-1596_0001|Contig4-2632_0007|orf6.4526|CA2574|CaO19.6214|CaO19.13595	Cell wall acid trehalase; catalyzes hydrolysis of the disaccharide trehalose; similar to S. cerevisiae vacuolar acid trehalase (Ath1p) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1483537	1484150	-	tp(agg)1	1483537	1484150	2	1484150|1484075	1484114|1483537	1483828	1483604		tP(AGG)1.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=D]
Ca21chr1	1484787	1485890	+	orf19.6213	1484787	1485890	1	1484787	1485890	1484830	1485732	SUI2	orf19.13594|IPF20923.1|IPF13764.2|Contig4-2125_0001|orf6.4525|CA2573|CaO19.13594|CaO19.6213	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1485741	1487601	-	orf19.6211	1485741	1487601	1	1487601	1485741	1487542	1485887		orf19.13592|IPF20905.1|IPF13766.2|Contig4-2125_0002|Contig4-2125_0003|orf6.4523|CA2572|CaO19.13592|PTE99|CaO19.6211|IPF13766	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1487721	1489281	-	orf19.6209	1487721	1489281	1	1489281	1487721	1489211	1487778		orf19.13590|IPF13769.1|IPF13767.3|Contig4-2125_0004|orf6.4521|orf6.5415|CA2571|CaO19.6209|IPF13769	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1487960	1489190	+	ntar_135	1487960	1489190	1	1487960	1489190	1488412	1488834			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1489673	1489788	-	tl(uaa)4	1489673	1489788	2	1489788|1489718	1489750|1489673				tL(UAA)4.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1490336	1492913	+	orf19.6208	1490336	1492913	1	1490336	1492913	1490379	1492802	MEF2	orf19.13589|IPF20891.1|IPF8163.1|Contig4-2876_0010|orf6.5416|CA3212|CaO19.6208	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1493074	1494190	+	orf19.6205	1493074	1494190	1	1493074	1494190	1493138	1494094		orf19.13586|IPF20921.1|IPF8160.1|Contig4-2876_0011|Contig4-2876_0012|orf6.5419|CA3213|CaO19.6205|CaO19.13586|IPF8160	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1494081	1497275	-	orf19.6203	1494081	1497275	1	1497275	1494081	1497140	1494204		PUT3|orf19.13584|IPF19238.2|IPF8158.2|Contig4-2876_0013|orf6.536|orf6.5421|CA3214|CaO19.6203	Predicted zinc-finger protein of unknown function; has similarity to S. cerevisiae Put3p, which is a transcription factor involved in the regulation of proline utilization genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1497797	1499186	-	orf19.6202	1497797	1499186	1	1499186	1497797	1499055	1497979	RBT4	orf19.13583|orf6.537|YJL79|PRY4|IPF8153.3|IPF27769.1|Contig4-2876_0017|orf6.5422|CA0104|IPF8153.2	Protein with similarity to plant pathogenesis-related proteins; required for virulence in mouse systemic and rabbit corneal infections; not required for filamentation; mRNA binds to She3p and is localized to hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1502242	1503195	-	orf19.6200	1502242	1503195	1	1503195	1502242	1503195	1502242		orf19.13580|IPF8147.2|IPF27770.1|Contig4-2022_0012|Contig4-2612_0003|orf6.5424|orf6.929|CA0229|CaO19.6200|IPF8147	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1504743	1507494	-	orf19.6199	1504743	1507494	2	1507494|1507055	1507434|1504743	1507029	1504870		orf19.13579|IPF20894.1|IPF13040.1|Contig4-2612_0009|orf6.5425|CA3215|CaO19.6199|HCS1|CaO19.13579	Predicted ORF in Assemblies 19, 20 and 21; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=A]
Ca21chr1	1507584	1508460	-	orf19.6198.1	1507584	1508460	2	1508460|1508123	1508331|1507584	1508336	1507818		IPF20969.1|IPF13038.1|Contig4-2612_0013|CA3216|IPF13038.3f|IPF13038	Predicted ORF in Assemblies 19, 20 and 21; gene has intron; gene was predicted by Annotation Working Group (AWG), subsequently removed from Assembly 20 by the AWG, and later reinstated (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1508968	1511996	-	orf19.6197	1508968	1511996	1	1511996	1508968	1511622	1509973		orf19.13577|IPF20903.1|IPF19979.1|Contig4-2590_0004|Contig4-2590_0005|orf6.5427|CA3217|CaO19.13577|DHH1|CaO19.6197	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1513182	1514134	+	orf19.6196	1513182	1514134	1	1513182	1514134	1513343	1513909		orf19.13576|IPF20931.1|IPF10005.1|Contig4-2590_0009|orf6.5428|CA3218|CaO19.13576|CaO19.6196|IPF10005	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1514119	1516522	-	orf19.6195	1514119	1516522	1	1516522	1514119	1516388	1514154		orf19.13575|IPF20893.1|IPF10003.2|Contig4-2590_0011|orf6.5429|CA3219|RNH70|CaO19.6195|CaO19.13575|IPF10003	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1516632	1517852	-	orf19.6194	1516632	1517852	1	1517852	1516632	1517800	1516859		orf19.13574|IPF10001|IPF20922.1|IPF10001.2|Contig4-1805_0002|orf6.5430|CA3220|CaO19.13574|CaO19.6194	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1516894	1517647	+	ntar_136	1516894	1517647	1	1516894	1517647					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1518217	1522248	+	orf19.6193	1518217	1522248	1	1518217	1522248	1518264	1522049	TAF145	orf19.8354|orf19.13573|IPF20901.1|IPF10000.2|IPF26567.1|IPF16558.2|orf6.996|orf6.5431|TAF1|CA3221|CA0255|orf19.735|IPF10000.5eoc	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Taf145p, which is a component of RNA polymerase II transcription factor TFIID; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1526789	1529011	+	orf19.4456	1526789	1529011	1	1526789	1529011	1527013	1528836	GAP4	orf19.11936|IPF22804.1|IPF6541.2|GAP5|Contig4-1998_0001|orf6.7269|CA4667|GAP31|CaO19.11936|CaO19.4456	Putative amino acid permease; hyphal induced; regulated by Gcn2p and Gcn4p; shows colony morphology-related gene regulation by Ssn6p; detected at plasma membrane of yeast-form and germ tube by mass spectrometry [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1528932	1531089	-	orf19.4455	1528932	1531089	1	1531089	1528932	1530826	1529021		orf19.11935|IPF22807.1|IPF6542.1|Contig4-1998_0002|orf6.7268|CA4666|CaO19.4455|CaO19.11935|IPF6542	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1531303	1534700	-	orf19.4451	1531303	1534700	1	1534700	1531303	1534645	1531511	RIA1	orf19.11931|IPF22841.1|IPF6548.2|Contig4-1998_0005|Contig4-2531_0013|orf6.7264|CA4665|CaO19.4451|CaO19.11931|IPF6548	Putative translation elongation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1534771	1535250	+	orf19.4450.2	1534771	1535250	1	1534771	1535250	1534840	1535082			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1535085	1535751	-	orf19.4450.1	1535085	1535751	1	1535751	1535085	1535433	1535227		IPF22833.1|IPF6551.2|Contig4-2531_0010|CA4664|IPF6551.3f	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1536562	1538879	-	orf19.4450	1536562	1538879	1	1538879	1536562	1538464	1536764		ZCF23|orf19.11930|IPF18188.2|IPF6554.2|Contig4-2531_0005|Contig4-2531_0007|orf6.7263|CA4663|CaO19.11930|CaO19.4450|IPF6554	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1540711	1541744	+	orf19.4449	1540711	1541744	1	1540711	1541744	1540755	1541501		orf19.11929|IPF22817.1|IPF6557.1|orf6.7262|CA4662|CaO19.4449|LYS7|CaO19.11929	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1542061	1544916	+	orf19.4448	1542061	1544916	1	1542061	1544916	1542293	1544758	SOG2	orf19.11928|IPF22794.1|IPF6561.2|Contig4-2378_0006|orf6.7261|CA4661|CaO19.11928|CaO19.4448|IPF6561	Leucine-rich-repeat domain protein of RAM cell wall integrity signaling network; role in cell separation, azole sensitivity; required for hyphal growth; lacks orthologs in higher eukaryotes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1545416	1546445	+	orf19.4447	1545416	1546445	1	1545416	1546445	1545462	1546361	YMC1	orf19.11927|IPF22816.1|IPF6563.1|Contig4-2378_0001|orf6.7260|CA4660|CaO19.4447|CaO19.11927	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1546298	1548251	-	orf19.4446	1546298	1548251	1	1548251	1546298	1548214	1546472		orf19.11926|IPF22808.1|IPF17754.2|orf6.7259|CA4659|CaO19.4446|CaO19.11926|IPF17754	Protein similar to ammomium permeases that is probably inactive, as a mep2 mep3 double homozygous null mutation abolishes cellular ammomium permease activity; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1549779	1551488	+	orf19.4445	1549779	1551488	1	1549779	1551488	1549838	1551466		orf19.11925|IPF22811.1|IPF3092.1|Contig4-2907_0018|orf6.7258|CA4658|CaO19.11925|CaO19.4445|IPF3092	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1551742	1552829	+	orf19.4444	1551742	1552829	1	1551742	1552829	1551791	1552717	PHO15	orf19.11924|IPF22814.1|IPF3094.1|Contig4-2907_0015|orf6.7257|CA4657|CaO19.4444|PHO131|CaO19.11924|PHO13|IPF3094	Protein described as 4-nitrophenyl phosphatase, possible histone H2A phosphatase; involved in regulation of white-opaque switching; hyphal downregulated; induced in core stress response; induced by heavy metal (cadmium) stress via Hog1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1552764	1553020	-	ntar_137	1552764	1553020	1	1553020	1552764					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1553448	1554293	+	orf19.4443	1553448	1554293	1	1553448	1554293	1553589	1554143	YPD1	orf19.11923|orf6.7256|IPF22818.1|IPF3095.1|Contig4-2907_0011|CA4656|CaO19.4443|CaO19.11923|IPF3095	Phosphohistidine intermediate protein in a phosphorelay signal transduction pathway; residue His69 is the phosphoacceptor histidine; predicted to be soluble and cytosolic; functional homolog of S. cerevisiae Ypd1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1554098	1556036	-	orf19.4442	1554098	1556036	1	1556036	1554098	1555985	1554303	ALG9	orf19.11922|IPF22809.1|IPF3098.2|Contig4-2907_0010|orf6.7255|CA4655|CaO19.11922|CaO19.4442|IPF3098	Putative mannosyltransferase; similar to S. cerevisiae Alg9p; has HKEXRF motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1556141	1558033	-	orf19.4441	1556141	1558033	1	1558033	1556141	1557966	1556170		orf19.11921|IPF22806.1|IPF3101.1|Contig4-2907_0006|Contig4-2907_0007|orf6.7254|CA4654|CaO19.11921|DNA43|CaO19.4441|IPF3101	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1558150	1560770	+	orf19.4440	1558150	1560770	1	1558150	1560770	1558202	1560721	SEC34	orf19.11920|IPF22793.1|IPF3102.1|Contig4-2907_0005|orf6.7253|CA4653|COG3|CaO19.4440|CaO19.11920|IPF3102	Protein not essential for viability; similar to S. cerevisiae Cog3p, which is a component of the conserved oligomeric Golgi complex involved in intracellular protein trafficking [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1560496	1561175	-	orf19.4439.1	1560496	1561175	1	1561175	1560496	1560986	1560777		IPF22795.1|IPF3103.2|orf6.3230	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1561038	1561481	+	orf19.4439	1561038	1561481	1	1561038	1561481	1561038	1561481		orf19.11919|IPF22822.1|IPF3105.2|Contig4-2907_0004|orf6.7252|CA4652|CaO19.11919|CaO19.4439|IPF3105	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1569740	1570173	-	tl(aag)2	1569740	1570173	2	1570173|1570098	1570137|1569740	1570167	1569962		tL(AAG)2.2	tRNA-Leu predicted by tRNAscan-SE; has atypical G at position 32 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=D]
Ca21chr1	1570906	1571473	+	ntar_138	1570906	1571473	1	1570906	1571473					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1571384	1571662	-	ntar_139	1571384	1571662	1	1571662	1571384	1571557	1571384			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1573775	1574044	+	ntar_140	1573775	1574044	1	1573775	1574044	1573775	1573897			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1578359	1580772	+	orf19.4438	1578359	1580772	1	1578359	1580772	1578967	1580490	RME1	orf19.11918|IPF3121|IPF3121.1|IPF28396.1|Contig4-3008_0024|orf6.7251|CA4651|CaO19.4438	Protein similar to S. cerevisiae meiotic regulator Rme1p; white-specific transcription; upregulation correlates with clinical development of fluconazole resistance; transcription is not regulated during rat oral infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1580496	1581040	-	ntar_141	1580496	1581040	1	1581040	1580496					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1581182	1584450	+	orf19.4437	1581182	1584450	2	1581182|1581323	1581252|1584450	1581235	1584358		orf19.11916|IPF9859.2|IPF28412.1|Contig4-3008_0028|Contig4-3008_0029|orf6.7249|CA4650|ISW1|ISW1.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1583991	1584993	-	orf19.4436	1583991	1584993	1	1584993	1583991	1584935	1584381		orf19.11915|IPF22819.1|IPF9860.2|Contig4-3008_0031|orf6.7248|CA4649|GPX2|CaO19.11915|CaO19.4436|GPX4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1585872	1590148	+	orf19.4435	1585872	1590148	1	1585872	1590148	1586011	1589922		orf19.11914|IPF9864.1|IPF28404.1|Contig4-3008_0033|orf6.7247|CA4648|STU1|CaO19.11914|CaO19.4435|IPF9864	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1590535	1593032	-	orf19.4433	1590535	1593032	1	1593032	1590535	1592574	1590604	CPH1	orf19.11912|APRP1|ACPR1|ACPR|IPF9866.3|IPF5536.2|Contig4-2476_0010|orf6.2724|orf6.695|orf6.7245|CA0154|CaO19.4433	Transcription factor required for mating and hyphal growth on solid media; with Efg1p required for host cytokine response; in filamentation pathway with Ess1p and Czf1p; regulates genes of galactose metabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1593608	1593860	-	ntar_142	1593608	1593860	1	1593860	1593608					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1594949	1598365	-	orf19.4432	1594949	1598365	1	1598365	1594949	1598119	1595267	KSP1	orf19.11910|IPF22791.1|IPF5540.2|Contig4-2969_0018|orf6.2723|CA1288|CaO19.11910|CaO19.4432	Putative protein of unknown function; mRNA binds to She3p and is localized to hyphal tips; mutation confers hypersensitivity to amphotericin B; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1598525	1598954	-	ntar_143	1598525	1598954	1	1598954	1598525					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1599231	1599949	+	ntar_144	1599231	1599949	1	1599231	1599949	1599811	1599933			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1600014	1600152	-	ntar_145	1600014	1600152	1	1600152	1600014					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1600347	1602209	+	orf19.4430	1600347	1602209	1	1600347	1602209	1600458	1602098		orf19.11908|IPF22812.1|IPF5545.2|Contig4-2969_0013|Contig4-2969_0014|orf6.2721|CA1287|CaO19.4430|CaO19.11908|IPF5545	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1601968	1604141	-	orf19.4428	1601968	1604141	1	1604141	1601968	1603689	1602250		orf19.11906|IPF5546|IPF5546.1|IPF28397.1|Contig4-2969_0012|orf6.2719|CA1286|CaO19.11906|CaO19.4428	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1604326	1605072	-	orf19.4427	1604326	1605072	1	1605072	1604326	1605009	1604515	SKP1	orf19.11905|IPF5549.2|IPF28398.1|Contig4-2969_0008|orf6.2718|orf6.2827|CA1285|CaO19.4427	Protein described as subunit D of kinetochore protein complex CBF3; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1605244	1607095	-	orf19.4426	1605244	1607095	1	1607095	1605244	1606830	1605439	PEX3	orf19.11904|IPF18715.2|IPF5552.2|Contig4-2969_0007|orf6.2717|orf6.2828|CA1362|CaO19.4426	Putative peroxisomal protein involved in targeting proteins into peroxisomes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1609129	1610100	+	orf19.4424	1609129	1610100	1	1609129	1610100	1609129	1610100	PHO100	orf19.11902|IPF22815.1|IPF5556.1|PHO3|Contig4-2969_0004|orf6.2830|CA1363|CaO19.4424|CaO19.11902|IPF5556	Putative inducible acid phosphatase; DTT-extractable and observed in culture supernatant under low-phosphate conditions; slight effect on murine virulence; induced on biofilm formation; virulence-group-correlated expression; N-glycosylated [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1610137	1610698	-	ntar_146	1610137	1610698	1	1610698	1610137					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1610930	1614440	+	orf19.4423	1610930	1614440	1	1610930	1614440	1611087	1614308		orf19.11901|IPF22836.1|IPF5561.2|Contig4-2969_0001|Contig4-2969_0002|orf6.2831|CA1364|CaO19.4423|CaO19.11901|IPF5561	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1615586	1615745	+	ntar_147	1615586	1615745	1	1615586	1615745					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1615671	1616981	-	orf19.2799	1615671	1616981	1	1616981	1615671	1616916	1615765	GPI8	orf19.10317|IPF24553.1|IPF11799.2|Contig4-2693_0008|orf6.3728|CA2007|CaO19.2799|CaO19.10317	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Gpi8p, which is a subunit of the GPI transamidase complex that adds GPI anchors to proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1617137	1619172	-	orf19.2798	1617137	1619172	1	1619172	1617137	1619149	1617182		orf19.10316|IPF24546.1|IPF11801.2|Contig4-2693_0007|orf6.3727|CA2006|CaO19.10316|CaO19.2798|IPF11801	Putative helicase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1619388	1621259	-	orf19.2797	1619388	1621259	1	1621259	1619388	1621259	1619388		orf19.10315|IPF24549.1|IPF11802.2|Contig4-2693_0005|orf6.3726|CA2005|CaO19.2797|CaO19.10315|IPF11802	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1621401	1623540	-	orf19.2796	1621401	1623540	1	1623540	1621401	1623502	1621508		orf19.10314|IPF24548.1|IPF15718.2|Contig4-2693_0003|orf6.3725|CA2004|CaO19.2796|POL12	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1623766	1624990	-	orf19.2795	1623766	1624990	1	1624990	1623766	1624898	1623924		orf19.10313|IPF24554.1|IPF16471.1|Contig4-1628_0003|orf6.3724|CA2003|LHP1|CaO19.2795|IPF16471	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1625216	1626196	+	orf19.2794	1625216	1626196	1	1625216	1626196	1625260	1626093		orf19.10312|IPF24557.1|IPF16470.2|Contig4-1628_0004|Contig4-1676_0002|orf6.3723|YDL219W|CA2002|CaO19.10312|CaO19.2794|IPF16470	Protein regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); alkaline upregulated; macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1626180	1629427	-	orf19.2792	1626180	1629427	1	1629427	1626180	1629144	1626286	IST2	orf19.10310|IPF7245.3|IPF17074.2|Contig4-2218_0006|orf6.3611|orf6.3721|CA2001|CaO19.2792|IPF17074	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1630691	1630786	+	orf19.2800	1630691	1630786	1	1630691	1630786					Predicted ORF in Assembly 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1631014	1631370	-	ntar_148	1631014	1631370	1	1631370	1631014	1631370	1631167			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1631779	1634913	-	orf19.2791	1631779	1634913	1	1634913	1631779	1634762	1631898		orf19.10309|IPF7255.2|IPF11796.1|Contig4-2483_0003|Contig4-2693_0010|orf6.3608|orf6.3610|orf6.3720|CA2000|CaO19.2791|IPF11796	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1635101	1636526	+	orf19.2790	1635101	1636526	1	1635101	1636526	1635240	1636334	SWD2	orf19.10306|IPF7260.1|IPF11792.2|Contig4-2384_0002|Contig4-2384_0003|orf6.3607|orf6.3719|CA1910|CaO19.10306|CaO19.2790|IPF7260	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1636441	1636839	-	ntar_149	1636441	1636839	1	1636839	1636441					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1636935	1638010	+	orf19.2789	1636935	1638010	1	1636935	1638010	1636942	1637901		orf19.10305|IPF24555.1|IPF7262.2|Contig4-2384_0004|orf6.3606|orf6.977|CA0248|CaO19.2789|IPF7262	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1637880	1639192	-	orf19.2788	1637880	1639192	1	1639192	1637880	1639135	1637927		orf19.10304|IPF24552.1|IPF7263.2|Contig4-2384_0005|Contig4-2384_0007|orf6.3605|orf6.976|CA0247|CaO19.2788|RIB21	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1639483	1640851	-	orf19.2787	1639483	1640851	1	1640851	1639483	1640814	1639582	PRY1	orf19.10303|IPF20091.1|IPF20053.1|Contig4-2384_0008|orf6.3604|orf6.975|CA1909|CaO19.2787|IPF20091	Transcription is opaque specific; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1641901	1645390	-	orf19.2786	1641901	1645390	1	1645390	1641901	1645192	1642067		orf19.10302|IPF24565.1|IPF7268.2|Contig4-2533_0009|orf6.3603|CA1908|APL3|CaO19.2786|CaO19.10302	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1645584	1646560	+	orf19.2785	1645584	1646560	1	1645584	1646560	1645704	1646228	ATP7	orf19.10301|IPF24558.1|IPF7270.1|orf6.3602|CA1907|CaO19.2785|CaO19.10301	Putative subunit of the F1F0-ATPase complex; shows colony morphology-related gene regulation by Ssn6p; farnesol-, macrophage-downregulated protein abundance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1646326	1647328	-	orf19.2784	1646326	1647328	1	1647328	1646326	1647328	1646384		orf19.10300|IPF24556.1|IPF7271.1|Contig4-2533_0003|Contig4-2533_0004|orf6.3601|CA1906|CaO19.2784|CaO19.10300|IPF7271	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1647588	1648207	+	ntar_150	1647588	1648207	1	1647588	1648207	1647989	1648207			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1647638	1648912	-	orf19.2783	1647638	1648912	1	1648912	1647638	1648912	1647638	PIR32	orf19.10299|IPF24551.1|IPF7274.2|Contig4-2533_0002|orf6.3600|CA1905|CaO19.10299|PIR3|CaO19.2783|IPF7274	[NOT TRANSCRIBED?] Protein described as putative cell wall structural component; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1649634	1650560	+	orf19.2782	1649634	1650560	1	1649634	1650560	1649731	1650258		orf19.10298|IPF7275.2|IPF19489.2|Contig4-2533_0001|orf6.14|orf6.3599|CA1904|CaO19.10298|GRX5|CaO19.2782	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1650887	1651487	+	ntar_151	1650887	1651487	1	1650887	1651487	1651236	1651487			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1651229	1654072	-	orf19.2781	1651229	1654072	1	1654072	1651229	1653745	1651229		orf19.10297|IPF14089.2|IPF19488.2|Contig4-2630_0016|orf6.15|orf6.859|CA0206|CaO19.2781|IPF14089	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1656963	1659084	-	ntar_152	1656963	1659084	1	1659084	1656963	1659046	1658867			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1658949	1659461	+	orf19.2779	1658949	1659461	1	1658949	1659461	1658949	1659461		orf19.10295|orf19.10296|IPF24559.1|IPF16330.2|Contig4-2630_0002|orf6.1476|orf6.1477|orf19.2780|CaO19.2779|CaO19.10295	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1659233	1659876	-	ntar_153	1659233	1659876	1	1659876	1659233					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1660182	1663440	+	orf19.2778	1660182	1663440	1	1660182	1663440	1660272	1662500		orf19.8812|orf19.10294|IPF26069.1|IPF18002.2|IPF24547.1|IPF16466.1|orf6.866|orf6.1475|CA0207|CA0504|orf19.1226|IPF16466.5eoc|IPF16466	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1663582	1666070	+	ntar_154	1663582	1666070	1	1663582	1666070	1664365	1665960			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1666503	1667093	+	orf19.1227	1666503	1667093	1	1666503	1667093	1666503	1667093		ZCF4|orf19.8813|IPF26088.1|IPF19850.1|Contig4-1474_0002|orf6.867|CA0208|CaO19.8813|CaO19.1227|IPF19850	Putative transcription factor with zinc cluster DNA-binding motif; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1667987	1669667	+	orf19.1228	1667987	1669667	1	1667987	1669667	1668206	1669300	HAP2	orf19.8814|IPF18396.2|IPF16519.2|orf6.5088|orf6.868|CA0209|CaO19.1228|CA2983|IPF18396|IPF18396.1	CCAAT-binding factor regulates low-iron (chelation) induction of FRP1 transcription, and under these conditions CBF comprises Hap43p and probably Hap2p and Hap3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1669635	1673221	-	orf19.1229	1669635	1673221	1	1673221	1669635	1672965	1669828		orf19.8815|orf19.8816|IPF16520.2|IPF26077.1|IPF19119.2|IPF29521.1|IPF13285.2|Contig4-1270_0001|Contig4-1270_0002|Contig4-2208_0002|orf6.5087|orf6.869|orf6.5086|CA6253|CA2982|CA2981|orf19.1230|orf19.1231|CSE1.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1673375	1674265	+	ntar_155	1673375	1674265	1	1673375	1674265	1674089	1674265			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1673923	1675468	-	orf19.1232	1673923	1675468	1	1675468	1673923	1675356	1674241	VRG4	orf19.8817|IPF26079.1|IPF13284.2|Contig4-2208_0006|orf6.5085|CA2980|CaO19.1232|CaO19.8817|GOG5	GDP-mannose transporter; essential; required for glycosylation, hyphal growth; functional homolog of S. cerevisiae Vrg4p, which imports GDP-mannose from cytoplasm to Golgi for protein and lipid mannosylation; no mammalian homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1676908	1678950	-	orf19.1233	1676908	1678950	1	1678950	1676908	1678759	1677134	ADE4	orf19.8818|IPF26073.1|IPF13283.2|Contig4-1515_0003|orf6.5084|CA2979|CaO19.1233|CaO19.8818	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1680602	1680836	-	ntar_156	1680602	1680836	1	1680836	1680602					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1685048	1685239	-	ntar_157	1685048	1685239	1	1685239	1685048					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1691374	1692912	+	orf19.4712	1691374	1692912	1	1691374	1692912	1691374	1692912	FGR6-3	IPF12868.1|orf6.1877|orf6.3125|CA1562|CaO19.4712|IFV12	Protein lacking an ortholog in S. cerevisiae; member of a family encoded by FGR6-related genes in the RB2 repeat sequence; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1696330	1699443	+	orf19.4713	1696330	1699443	1	1696330	1699443	1696389	1699295		orf19.12514|IPF13855.2|IPF22154.1|IPF10881.2|orf6.3126|orf6.3389|CA1563|orf19.5047|IPF13855.5eoc|IPF13855	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1699215	1700299	-	orf19.5049	1699215	1700299	1	1700299	1699215	1700264	1699335		orf19.12516|IPF22145.1|IPF10884.1|Contig4-2722_0002|orf6.3387|CA1747|CaO19.5049|CaO19.12516|IPF10884	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1700415	1702662	+	orf19.5050	1700415	1702662	1	1700415	1702662	1700480	1702567	MTO1	orf19.12517|IPF22121.1|IPF10886.2|Contig4-2722_0003|orf6.3386|CA1746|CaO19.12517|CaO19.5050|IPF10886	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1702547	1705070	-	orf19.5051	1702547	1705070	1	1705070	1702547	1704918	1702648		orf19.12518|IPF22116.1|IPF10888.1|Contig4-2722_0004|orf6.3385|CA1745|CaO19.5051|CaO19.12518|IPF10888	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1705129	1706945	+	orf19.5052	1705129	1706945	1	1705129	1706945	1705203	1706363		orf19.12519|IPF22139.1|IPF10889.1|Contig4-2722_0005|orf6.3384|CA1744|CaO19.5052|CaO19.12519|IPF10889	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1706365	1707330	-	orf19.5053	1706365	1707330	1	1707330	1706365	1707228	1706446		orf19.12520|IPF22150.1|IPF12209.2|Contig4-2722_0006|orf6.3383|CA1743|ECO1|CaO19.12520|CaO19.5053|IPF12209	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1707411	1708576	+	orf19.5054	1707411	1708576	1	1707411	1708576	1707564	1708466		orf19.12521|IPF22146.1|IPF12210.2|orf6.3382|CA1742|CaO19.5054|IPF12210	Putative quinolinate phosphoribosyl transferase, involved in NAD biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1708327	1710028	-	orf19.5056	1708327	1710028	1	1710028	1708327	1709964	1708525		orf19.12523|IPF12212.3|IPF28152.1|Contig4-2407_0008|Contig4-2407_0009|orf6.17|orf6.3380|CA0002|CaO19.5056|APC10|DOC1|IPF12212.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1710157	1711669	+	orf19.5057	1710157	1711669	1	1710157	1711669	1710213	1711466		orf19.12524|IPF19487.2|IPF12213.2|Contig4-2407_0007|orf6.16|orf6.3379|CA1741|CaO19.5057|IPF12213	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1711544	1713692	-	orf19.5058	1711544	1713692	1	1713692	1711544	1713620	1711758	SMI1	orf19.12525|IPF22129.1|IPF12215.2|Contig4-2407_0002|Contig4-2407_0003|orf6.3378|CA1740|CaO19.5058	Decreased mRNA abundance observed in cyr1 homozygous null mutant hyphal cells; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1714361	1714672	+	ntar_158	1714361	1714672	1	1714361	1714672	1714506	1714637			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1714577	1717207	-	orf19.5059	1714577	1717207	1	1717207	1714577	1717055	1714737	GCS1	orf19.12526|orf19.12527|orf6.1606|GSH1|IPF12218.2|IPF28150.1|orf6.3377|orf6.1607|CA0583|CA6219|CA0584|orf19.5060|GSH1.53f|GSH1.3f|GSH1.exon2	Gamma-glutamylcysteine synthetase; enzyme of glutathione synthesis; similar to Hansenula polymorpha Gsh2p; induced on early/intermediate biofilm formation, in low iron, H2O2, Cd, or presence of human neutrophils; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1717787	1718279	-	ntar_159	1717787	1718279	1	1718279	1717787					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1718441	1721156	-	orf19.5061	1718441	1721156	1	1721156	1718441	1720995	1718587	ADE5,7	orf19.12528|IPF13495.2|IPF19378.2|Contig4-1920_0002|orf6.1608|orf6.238|CA6294|CA0585|orf19.5062|"ADE5|7.3f"	Enzyme of adenine biosynthesis; interacts with Vps34p; required for hyphal growth and virulence; flucytosine induced; not induced during GCN response, in contrast to the S. cerevisiae ortholog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1722833	1723616	+	orf19.5063	1722833	1723616	1	1722833	1723616	1722918	1723493		orf19.12529|IPF17932.1|IPF13493.1|Contig4-1378_0002|Contig4-1944_0005|orf6.1609|orf6.468|CA0586|CaO19.5063|IPF13493	Predicted ORF in Assemblies 19, 20 and 21; ciclopirox olamine induced; regulated by Ssn6p; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1723604	1725171	-	orf19.5064	1723604	1725171	1	1725171	1723604	1725072	1723858	MRPL3	orf19.12530|IPF22138.1|IPF19552.2|Contig4-1944_0004|orf6.134|orf6.469|CA0089|CaO19.12530|CaO19.5064|IPF19552.1	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1725713	1726402	+	orf19.5064.1	1725713	1726402	1	1725713	1726402	1725751	1725942			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1726146	1727832	-	orf19.5065	1726146	1727832	1	1727832	1726146	1727666	1726263		orf19.12531|IPF13488.2|IPF15606.2|Contig4-2050_0003|orf6.133|orf6.1522|CA0535|ERD1|CaO19.5065|IPF15606	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1728195	1728751	+	ntar_160	1728195	1728751	1	1728195	1728751					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1728267	1729364	-	ntar_161	1728267	1729364	1	1729364	1728267	1729336	1729208			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1729642	1730566	-	orf19.5066	1729642	1730566	1	1730566	1729642	1730502	1729702		orf19.12532|IPF22148.1|IPF15607.1|Contig4-2050_0001|orf6.1521|CA0534|CaO19.12532|CaO19.5066|IPF15607	Predicted ORF in Assemblies 19, 20 and 21; essential; S. cerevisiae ortholog is essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1730636	1731522	+	orf19.5067	1730636	1731522	1	1730636	1731522	1730783	1731481		orf19.12533|IPF22153.1|IPF19872.1|orf6.1520|CA0533|LRP1|CaO19.5067|CaO19.12533|IPF19872	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1731467	1735401	-	orf19.5068	1731467	1735401	1	1735401	1731467	1735358	1731684		orf19.12534|IPF12318.3|IPF16157.2|Contig4-2885_0001|orf6.1519|orf6.2426|CA0532|IRE1|CaO19.5068	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1735791	1736125	+	ntar_162	1735791	1736125	1	1735791	1736125					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1736568	1738498	-	orf19.5069	1736568	1738498	1	1738498	1736568	1737864	1737133		orf19.12535|IPF12316.2|IPF19120.1|Contig4-2337_0002|orf6.2427|orf6.865|CA1098|CaO19.5069|IPF12316	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1739017	1739410	+	ntar_163	1739017	1739410	1	1739017	1739410					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1739043	1739770	-	ntar_164	1739043	1739770	1	1739770	1739043	1739769	1739647			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1740730	1740943	-	ntar_165	1740730	1740943	1	1740943	1740730					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1741632	1741804	+	ntar_166	1741632	1741804	1	1741632	1741804					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1741813	1743225	-	orf19.5070	1741813	1743225	1	1743225	1741813	1743149	1741854		orf19.12536|orf6.2428|IPF12312.1|IPF28154.1|Contig4-1983_0002|Contig4-2337_0010|YOR009|CA1099|CaO19.5070|IPF12312	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally regulated by iron; expression greater in low iron; similar to cell-wall mannoproteins; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; regulated by osmotic and oxidative stress via Hog1p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1746838	1749949	+	orf19.5071	1746838	1749949	1	1746838	1749949	1747314	1749605	NRP1	orf19.12537|IPF18762.2|IPF10092.2|Contig4-2713_0003|orf6.2429|orf6.6305|CA3900|CaO19.12537|CaO19.5071|IPF10092	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1750143	1751122	+	orf19.5073	1750143	1751122	1	1750143	1751122	1750300	1751019	DPM1	orf19.12539|IPF22152.1|IPF10089.2|Contig4-2713_0004|orf6.6303|CA3899|DPMS|CaO19.12539|CaO19.5073	Protein with similarity to S. cerevisiae Dpm1p, which is dolichol phosphate mannose synthase; filament induced; Tup1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1751283	1753286	+	orf19.5074	1751283	1753286	1	1751283	1753286	1751322	1753196		orf19.12540|IPF22128.1|IPF10088.2|Contig4-1814_0001|Contig4-2713_0005|orf6.6302|CA3898|CaO19.5074|UBA2|CaO19.12540	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1753572	1754201	+	orf19.5076	1753572	1754201	1	1753572	1754201	1753657	1754037	PFY1	orf19.12542|orf6.6300|IPF22172.1|IPF16724.2|Contig4-1814_0003|CA3897|CaO19.5076|CaO19.12542	Profilin, functional homolog of S. cerevisiae Pfy1p; hyphal-induced; macrophage/pseudohyphal-induced; regulated by Nrg1p, Tup1p; gene lacks intron (unlike S. cerevisiae PFY1); complements growth of S. cerevisiae srv2 mutant; nonessential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1754137	1754446	-	ntar_167	1754137	1754446	1	1754446	1754137	1754446	1754273			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1754493	1755250	+	orf19.5076.1	1754493	1755250	1	1754493	1755250	1754779	1755012			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1754642	1755046	-	ntar_168	1754642	1755046	1	1755046	1754642					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1755444	1756220	+	orf19.5077	1755444	1756220	1	1755444	1756220	1755501	1756001		orf19.12543|IPF22157.1|IPF10339.2|Contig4-1814_0007|orf6.6299|CA3896|CaO19.12543|CaO19.5077|IPF10339	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1756169	1757480	-	ntar_169	1756169	1757480	1	1757480	1756169	1756822	1756694			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1756528	1757212	+	orf19.5078	1756528	1757212	1	1756528	1757212	1756580	1756987		orf19.12544|IPF22175.1|IPF10341.1|orf6.6298|CaO19.5078|CaO19.12544	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1757938	1762669	+	orf19.5079	1757938	1762669	1	1757938	1762669	1758073	1762545	CDR4	orf19.12545|IPF22170.1|IPF10349.2|orf6.6297|CA3895|CaO19.12545|CaO19.5079	Putative transporter of ATP-binding cassette (ABC) superfamily; fluconazole, Sfu1p, Hog1p, core stress response induced; caspofungin repressed; fluconazole resistance is not affected by mutation or correlated with expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1762642	1763481	-	orf19.5079.1	1762642	1763481	1	1763481	1762642	1763442	1763056			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1763645	1766898	-	orf19.5081	1763645	1766898	1	1766898	1763645	1766850	1763797	FUN12	orf19.12547|IPF22183.1|IPF8722.1|Contig4-2712_0006|orf6.6295|CA3894|CaO19.12547|CaO19.5081|YIF2	Functional homolog of S. cerevisiae Fun12p translation initiation factor eIF5B; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1767343	1768664	+	orf19.5083	1767343	1768664	1	1767343	1768664	1767426	1768532	DRG1	orf19.12549|IPF22140.1|IPF8715.2|Contig4-2712_0003|orf6.6293|CA3893|FUN11|CaO19.12549|CaO19.5083	Member of the DRG family of GTP-binding proteins; involved in regulation of invasive filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1768800	1772408	+	orf19.5085	1768800	1772408	1	1768800	1772408	1769083	1772358		orf19.12551|IPF22181.1|IPF8712.2|Contig4-2712_0001|orf6.6291|CA3892|PSE1|CaO19.12551|CaO19.5085	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1772677	1775122	+	orf19.5087	1772677	1775122	1	1772677	1775122	1772735	1774846	BUD6	orf19.12553|IPF22122.1|IPF8707.2|Contig4-2085_0001|orf6.6289|CA3891|CaO19.5087|CaO19.12553	Protein required for Spitzenkorper formation in hyphal cells (wild-type localization of Mlc1p to the Spitzenkorper); localizes to polarisome [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1774798	1777461	-	orf19.5089	1774798	1777461	1	1777461	1774798	1777459	1774856	TERT	orf19.12555|orf6.6287|TERT1|TERT2|IPF22114.1|IPF19791.1|Contig4-2085_0003|CA3890|EST2|CaO19.12555|TRT1|CaO19.5089	Telomerase reverse transcriptase; catalytic protein subunit of telomere synthesis; essential for telomerase activity; has telomerase-specific motif T and other conserved reverse transcriptase motifs [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1777612	1778726	+	orf19.5090	1777612	1778726	1	1777612	1778726	1777650	1778630		orf19.12556|IPF22143.1|IPF12969.2|Contig4-2641_0017|orf6.6286|CA3889|TAD3|CaO19.12556|CaO19.5090	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1778151	1779265	-	orf19.5092	1778151	1779265	1	1779265	1778151	1779265	1778627		orf19.12558|IPF22155.1|IPF12967.1|Contig4-2641_0001|orf6.6284|CA3888|CaO19.12558|CaO19.5092|IPF12967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1779290	1780639	+	orf19.5093	1779290	1780639	1	1779290	1780639	1779375	1780433		orf19.12559|IPF22141.1|IPF12964.2|Contig4-2641_0003|orf6.6283|CA3887|SFH1|CaO19.5093|CaO19.12559|IPF12964	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1780557	1783057	-	orf19.5094	1780557	1783057	1	1783057	1780557	1782963	1780738	BUL1	orf19.12560|IPF22119.1|IPF12963.2|Contig4-2641_0004|Contig4-2641_0005|orf6.6282|CA3886|BUL5|CaO19.12560|CaO19.5094|IPF12963	Protein not essential for viability; macrophage/pseudohyphal-induced; similar to S. cerevisiae Bul1p, which may be involved in selection of substrates for ubiquitination [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1784600	1784868	+	ntar_170	1784600	1784868	1	1784600	1784868					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1785343	1789537	-	orf19.5095	1785343	1789537	1	1789537	1785343	1789380	1785424		orf19.12561|IPF22177.1|IPF19790.1|Contig4-2641_0013|Contig4-2641_0015|orf6.4030|orf6.6281|CA3885|OSH2|CaO19.5095|IPF19790	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1790346	1793765	-	orf19.5097	1790346	1793765	1	1793765	1790346	1793606	1790436	CAT8	orf19.12563|IPF9674.2|IPF28167.1|Contig4-2662_0002|Contig4-2662_0003|orf6.4032|CaO19.5097|CaO19.12563|CA2219	Predicted zinc-cluster protein; null mutant shows a defect in transcription of JEN1 lactate permease gene; flucytosine repressed; similar to S. cerevisiae Cat8p but mutant phenotype suggests that it has a different set of target genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1794185	1795270	+	orf19.5098	1794185	1795270	1	1794185	1795270	1794223	1795185	NTG1	orf19.12564|orf6.4033|IPF22144.1|IPF9671.1|Contig4-2662_0007|CA2220|CaO19.12564|CaO19.5098	Protein with strong similarity to both S. cerevisiae Ntg1p and Ntg2p DNA repair glycosylases; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1795243	1800188	-	orf19.5100	1795243	1800188	1	1800188	1795243	1800113	1795293	MLT1	orf19.12566|ABC1|BPT1|YCF1|BPT1-2|IPF22163.1|IPF9670.2|Contig4-2662_0008|Contig4-2662_0011|Contig4-2662_0013|orf6.4035|CA2221|CaO19.12566|CaO19.5100|IPF9670	Vacuolar membrane transporter: MRP subfamily of ABC family; similar to S. cerevisiae Bpt1p and Ycf1p; may transport organic anions conjugated to glutathione, glucuronate, or sulfate; required for virulence in mouse peritonitis model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1800842	1801282	+	ntar_171	1800842	1801282	1	1800842	1801282	1801098	1801232			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1801471	1804140	+	orf19.5101	1801471	1804140	1	1801471	1804140	1801719	1804082	CCR4	orf19.12567|IPF22115.1|IPF13962.2|Contig4-2297_0004|orf6.4036|CA2222|CaO19.12567|CaO19.5101	Protein similar to S. cerevisiae Ccr4p of the CCR4-NOT transcription regulatory complex; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1804132	1806475	-	orf19.5102	1804132	1806475	1	1806475	1804132	1806443	1804179	PLB5	orf19.12568|IPF13965.2|IPF17127.3|Contig4-2297_0003|orf6.4037|orf6.6348|CA2223|CaO19.5102	Putative phospholipase B, fungal-specific (no human or murine homolog); null mutation eliminates cell-associated phospholipase A2 activity and attenuates virulence; putative GPI anchor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1806853	1808045	-	orf19.5103	1806853	1808045	1	1808045	1806853	1807929	1806937		orf19.12569|IPF17128.2|IPF12719.2|Contig4-1667_0001|orf6.4038|orf6.6347|CA3931|PMU5|CaO19.5103|IPF12719	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1808962	1809773	-	orf19.5104	1808962	1809773	2	1809773|1809464	1809627|1808962	1809691	1809023	LTP1	orf19.12570|IPF22169.1|IPF12722.1|Contig4-2155_0001|orf6.6346|CA3929|orf19.5104.1|LPT1|CA3930|LPT1.exon2	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to S. cerevisiae Ltp1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1809983	1813984	-	orf19.5105	1809983	1813984	1	1813984	1809983	1813627	1810187		orf19.12571|IPF22178.1|IPF12729.2|Contig4-2155_0005|Contig4-2155_0006|orf6.6345|CA3928|CaO19.5105|Gal11|CaO19.12571	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1814478	1814625	+	ntar_172	1814478	1814625	1	1814478	1814625					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1816240	1819386	-	orf19.5106	1816240	1819386	1	1819386	1816240	1819339	1816394	DIP2	orf19.12572|IPF22110.1|IPF14262.2|Contig4-2615_0005|Contig4-2615_0006|orf6.6344|CA3927|CaO19.12572|CaO19.5106	Protein similar to S. cerevisiae Dip2p, of small ribonucleoprotein complex; transposon mutation affects filamentous growth; physically interacts with TAP-tagged Nop1p; heterozygous null mutant exhibits resistance to parnafungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1820188	1822491	+	orf19.5107	1820188	1822491	1	1820188	1822491	1820259	1822247	NOT5	orf19.12573|orf6.6343|IPF13254.2|IPF16198.2|Contig4-2615_0003|orf6.142|CA3926|CaO19.12573|CaO19.5107|IPF16198	Protein with similarity to S. cerevisiae Not5p, which is a member of the transcription regulatory CCR4-NOT complex; required for hyphal growth; antigenic during human oral infection; greater expression in yeast-form cells than hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1823480	1825620	+	orf19.5110	1823480	1825620	1	1823480	1825620	1823851	1825434	OPY2	orf19.12576|IPF22134.1|IPF13257.2|Contig4-2451_0005|orf6.6340|CA3925|CaO19.5110|CaO19.12576|IPF13257	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1825876	1828762	+	orf19.5112	1825876	1828762	1	1825876	1828762	1826680	1828713	TKL1	orf19.12578|TKT1|IPF22123.1|IPF13260.2|Contig4-2451_0003|orf6.6338|CA3924|CaO19.12578|CaO19.5112	Putative transketolase; localizes to surface of yeast-form cells, but not hyphae; soluble protein in hyphae; transcription is regulated by Nrg1p, Mig1p, and Tup1p; antigenic in human or murine infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1829076	1830430	-	orf19.5113	1829076	1830430	1	1830430	1829076	1830334	1829288	ADH2	orf19.12579|IPF22142.1|IPF16784.2|Contig4-2451_0001|orf6.6337|CA3923|CaO19.5113	Putative alcohol dehydrogenase; soluble protein in hyphae; fungal-specific (no human or murine homolog); expression is regulated upon white-opaque switching; regulated by Ssn6p; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1831645	1832566	-	orf19.5114	1831645	1832566	1	1832566	1831645	1832442	1831969		orf19.12580|IPF22160.1|IPF6349.2|Contig4-3000_0003|orf6.6336|CA3922|CaO19.12580|GRD19|CaO19.5114	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1832750	1833503	-	orf19.5114.1	1832750	1833503	1	1833503	1832750	1833139	1832948			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1834155	1835964	-	orf19.5117	1834155	1835964	1	1835964	1834155	1835814	1834354	OLE1	orf19.12583|orf6.6333|IPF22136.1|IPF6353.2|Contig4-3000_0008|CA3921|CaO19.5117|CaO19.12583	Fatty acid desaturase (stearoyl-CoA desaturase), essential protein involved in oleic acid synthesis; required for aerobic hyphal growth and chlamydospore formation; subject to hypoxic regulation; fluconazole-induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1838982	1841296	+	orf19.5118	1838982	1841296	1	1838982	1841296	1839339	1841225	SDS24	orf19.12584|orf6.6332|IPF22127.1|IPF6359.2|Contig4-3000_0016|Contig4-3000_0017|CA3920|SDS23|CaO19.12584|CaO19.5118	Protein described as similar to S. cerevisiae Ybr214wp; transcription regulated by Mig1p and Tup1p; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1841963	1842100	+	ntar_173	1841963	1842100	1	1841963	1842100					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1842478	1844188	+	orf19.382	1842478	1844188	1	1842478	1844188	1842606	1843982	TEF2	orf19.8012|IPF26916.1|IPF6365.2|Contig4-3000_0020|orf6.339|TEF2-1|CaO19.382|CaO19.8012	Translation elongation factor 1-alpha; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1844067	1846082	-	orf19.384	1844067	1846082	1	1846082	1844067	1845892	1844216		orf19.8014|IPF6367.2|IPF19375.2|Contig4-2976_0005|orf6.247|orf6.341|orf6.6280|CA3884|CaO19.384|IPF6367	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1846424	1849566	-	orf19.385	1846424	1849566	1	1849566	1846424	1849496	1846497	GCV2	orf19.8015|IPF19789.1|IPF6369.3|orf6.246|orf6.6279|CA3883|CaO19.385	Putative protein of glycine catabolism; downregulated by Efg1p; Hog1p-induced; upregulated by Rim101p at acid pH; transcription is activated in the presence of elevated CO2; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1850262	1851563	-	orf19.386	1850262	1851563	1	1851563	1850262	1851405	1850470	SAM4	orf19.8016|IPF26919.1|IPF7279.1|Contig4-1631_0002|orf6.6278|CA3882|CaO19.8016|CaO19.386|IPF7279	Alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1851756	1854660	+	orf19.387	1851756	1854660	1	1851756	1854660	1851872	1854532	GCR3	orf19.8017|IPF26905.1|IPF7281.2|Contig4-3031_0024|orf6.6277|CA3881|CaO19.8017|CaO19.387	Functional homolog of S. cerevisiae Gcr3p, which acts in regulation of glycolytic genes; no intron predicted, in contrast to intron in S. cerevisiae GCR3 gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1854812	1855966	+	orf19.388	1854812	1855966	1	1854812	1855966	1854922	1855884	CAF16	orf19.8018|IPF26920.1|IPF7283.2|Contig4-3031_0023|orf6.6276|CaO19.8018|CaO19.388|CA3880	ABC family protein, predicted not to be a transporter; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1855791	1856439	-	orf19.389	1855791	1856439	1	1856439	1855791	1856347	1855967		orf19.8019|IPF26932.1|IPF7284.2|Contig4-3031_0022|orf6.6275|CaO19.389|CaO19.8019	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1856685	1857765	-	orf19.390	1856685	1857765	1	1857765	1856685	1857461	1856886	CDC42	orf19.8020|IPF26926.1|IPF7286.2|Contig4-3031_0021|orf6.6274|CA3879|CaO19.8020|CaO19.390	Rho-type GTPase; required for budding and maintenance of hyphal growth; GGTase I geranylgeranylated; misexpression blocks hyphal growth, causes avirulence in mouse IV infection; shows actin-dependent localization to hyphal tip [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1858202	1860914	-	orf19.391	1858202	1860914	1	1860914	1858202	1860375	1858237	UPC2	orf19.8021|IPF26909.1|IPF7289.2|Contig4-3031_0016|Contig4-3031_0018|orf6.6273|CA3878|CaO19.8021|ECM22|CaO19.391|IPF7289	Transcriptional regulator of ergosterol biosynthetic genes and sterol uptake; binds ERG2 promoter; has Zn(2)-Cys(6) binuclear cluster; induced upon ergosterol depletion, by azoles, anaerobicity; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1858273	1858554	+	ntar_174	1858273	1858554	1	1858273	1858554	1858391	1858546			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1861178	1861910	+	orf19.392	1861178	1861910	1	1861178	1861910	1861319	1861753		orf19.8022|IPF26931.1|IPF7290.1|Contig4-3031_0013|orf6.6272|CA3877|CBP4|CaO19.392|CaO19.8022	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1861670	1862464	-	orf19.393	1861670	1862464	2	1862464|1862324	1862393|1861670	1862414	1861819		orf19.8023|IPF7291.2|IPF29846.1|Contig4-3031_0012|orf6.6271|CA3876|APS3|CaO19.393	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1862562	1864117	+	orf19.394	1862562	1864117	1	1862562	1864117	1862609	1863994		orf19.8024|IPF14430.2|IPF29842.1|Contig4-3031_0011|orf6.6270|CA3875|CaO19.394|IPF14430	Putative kynureninase, involved in NAD biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1864133	1865606	-	orf19.395	1864133	1865606	1	1865606	1864133	1865548	1864226	ENO1	orf19.8025|IPF26917.1|IPF14429.2|Contig4-3031_0010|orf6.6269|CA3874|ENO|CaO19.395|CaO19.8025	Enolase (2-phospho-D-glycerate-hydrolyase), enzyme of glycolysis and gluconeogenesis; major cell-surface antigen; binds host plasmin and plasminogen; immunoprotective; phagocytosis, biofilm-regulated; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1866384	1867304	+	orf19.396	1866384	1867304	1	1866384	1867304	1866510	1867145	EAF6	orf19.8026|IPF26924.1|IPF8825.1|Contig4-2296_0007|Contig4-3031_0009|orf6.6268|CA3873|CaO19.8026|CaO19.396|IPF8825	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1867082	1867693	-	orf19.397	1867082	1867693	1	1867693	1867082	1867667	1867224		orf19.8027|IPF26928.1|IPF8826.2|Contig4-3031_0008|orf6.6267|CA3872|MRPL28|CaO19.397|CaO19.8027	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1867848	1868511	+	orf19.398	1867848	1868511	1	1867848	1868511	1867938	1868411		orf19.8028|IPF26929.1|IPF8828.2|Contig4-3031_0007|orf6.6266|CA3871|CaO19.8028|CaO19.398|IPF8828	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1868490	1870780	-	orf19.399	1868490	1870780	1	1870780	1868490	1870656	1868518		orf19.8029|IPF26907.1|IPF8830.2|Contig4-3031_0005|orf6.6265|CA3870|CaO19.399|YPK2|CaO19.8029|YPK1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1871191	1872370	-	orf19.400	1871191	1872370	1	1872370	1871191	1872201	1871464	GCF1	orf19.8030|IPF26922.1|IPF8831.2|Contig4-3031_0004|orf6.6264|CA3869|CaO19.400|CaO19.8030|IPF8831	HMG box-containing mitochondrial (mt) protein; binds to mt DNA and to the HWP1 promoter; mutant phenotype and functional complementation of an S. cerevisiae abf2 mutation suggest a role in mt genome replication and maintenance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1872886	1874949	+	orf19.401	1872886	1874949	1	1872886	1874949	1872960	1874624	TCP1	orf19.8031|CCT1|IPF26911.1|IPF8832.2|Contig4-3031_0002|orf6.6263|CA3868|CaO19.401|CaO19.8031	Transcription is induced in response to alpha pheromone in SpiderM medium; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1874853	1875711	-	orf19.403	1874853	1875711	1	1875711	1874853	1875646	1874882	PCL2	orf19.8033|IPF26921.1|IPF8834.3|Contig4-3031_0001|orf6.2813|orf6.6261|CA1351|CaO19.403|IPF8834.2	Cyclin homolog; reduced expression observed upon depletion of Cln3p; farnesol regulated; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1877268	1877957	+	ntar_175	1877268	1877957	1	1877268	1877957	1877457	1877642			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1877892	1879482	-	orf19.405	1877892	1879482	1	1879482	1877892	1879275	1878025	VCX1	orf19.8035|IPF26918.1|IPF16576.2|Contig4-2020_0006|orf6.2815|CA1352|CaO19.8035|CaO19.405	Putative H+/Ca2+ antiporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1880541	1882337	-	orf19.406	1880541	1882337	1	1882337	1880541	1882136	1880646	ERG1	orf19.8036|IPF26914.1|IPF19729.1|Contig4-2020_0009|Contig4-2020_0010|orf6.2816|CA1353|CaO19.8036|CaO19.406	Squalene epoxidase, catalyzes epoxidation of squalene to 2,3(S)-oxidosqualene in the ergosterol biosynthetic pathway; essential; target of allylamine antifungal drugs; uses NADH as a reducing cofactor, while S. cerevisiae Erg1p uses NADPH [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1882594	1882743	+	ntar_176	1882594	1882743	1	1882594	1882743					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1882784	1885099	-	orf19.407	1882784	1885099	1	1885099	1882784	1885055	1882857	GCD6	orf19.8037|IPF26908.1|IPF10142.2|Contig4-2780_0002|orf6.2817|CA1354|CaO19.8037|CaO19.407	Putative catalytic epsilon subunit of the translation initiation factor eIF2B, based on similarity to S. cerevisiae Gcd6p; genes encoding translation factors are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1885178	1885588	+	ntar_177	1885178	1885588	1	1885178	1885588	1885312	1885494			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1885487	1886398	-	orf19.409	1885487	1886398	1	1886398	1885487	1886244	1885603		orf19.8039|IPF10138|IPF26923.1|IPF10138.2|Contig4-2780_0005|orf6.2819|CA1356|CaO19.8039|CaO19.409|IPF10138.5f	Predicted membrane protein; similar to S. cerevisiae Ynr018Wp [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1886569	1887623	+	orf19.4720	1886569	1887623	1	1886569	1887623	1886980	1887468	CTR2	orf19.12183|IPF22485.1|IPF15729.2|Contig4-2780_0006|orf6.3182|CA1600|orf19.72|CaO19.12183|CaO19.4720	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1887718	1889347	+	orf19.4721	1887718	1889347	1	1887718	1889347	1887838	1889175		orf19.12184|IPF22424.1|IPF15728.2|Contig4-2780_0007|orf6.3183|CA1601|CaO19.12184|CaO19.4721|IPF15728	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1889408	1890580	+	orf19.4722	1889408	1890580	1	1889408	1890580	1889579	1890403		orf19.12185|IPF18649.2|IPF13658.2|Contig4-2780_0008|orf6.3184|CA1602|CaO19.4722|RTG1|CaO19.12185	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1890402	1891555	-	orf19.4723	1890402	1891555	2	1891555|1891207	1891293|1890402	1891525	1890589		orf19.12186|IPF22475.1|IPF22533.1|IPF13656.2|IPF13655.2|Contig4-2780_0009|orf6.3185|CA1603|FAD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1891689	1892585	-	orf19.4724	1891689	1892585	1	1892585	1891689	1892559	1891789		orf19.12187|IPF22466.1|IPF13653.2|Contig4-2780_0010|orf6.3186|CA1604|CaO19.4724|SAP62|CaO19.12187|IPF13653	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1892816	1895340	+	orf19.4725	1892816	1895340	1	1892816	1895340	1893017	1895206	SWI6	orf19.12188|IPF22383.1|IPF17885.2|orf6.3187|CA1605|CaO19.12188|CaO19.4725	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1895254	1896022	-	orf19.4726	1895254	1896022	1	1896022	1895254	1895937	1895362		orf19.12189|IPF22479.1|IPF16484.1|orf6.3188|CA1606|FRQ1|CaO19.4726|CaO19.12189|NCS1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1896169	1896877	+	orf19.4727	1896169	1896877	1	1896169	1896877	1896273	1896740		orf19.12190|IPF14916.2|IPF16483.1|orf6.2181|orf6.3189|CA1607|CaO19.4727|IPF14916	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1897055	1901385	+	orf19.4728	1897055	1901385	1	1897055	1901385	1897223	1901365		orf19.12191|IPF14914.2|IPF18648.2|IPF16481.2|orf6.2182|orf6.3190|orf6.439|CA0956|CA6289|orf19.4729|IPF14914.5f|IPF14914	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1901564	1902491	+	orf19.4730	1901564	1902491	2	1901564|1901655	1901592|1902491	1901579	1902363		orf19.12192|IPF22474.1|IPF14323.2|orf6.2183|orf6.438|CA0079|CaO19.4730|IPF14323	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1902948	1904358	+	orf19.4731	1902948	1904358	1	1902948	1904358	1903070	1904245		orf19.12193|IPF14322.1|IPF19274.1|Contig4-2484_0005|orf6.2184|orf6.437|CA0957|COG5|CaO19.4731|IPF14322	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1904252	1907259	-	orf19.4732	1904252	1907259	1	1907259	1904252	1907202	1904416	SEC24	orf19.12194|IPF14321.2|IPF11772.2|Contig4-2484_0008|orf6.2083|orf6.2185|CA0958|CaO19.4732	Possible role in ER to Golgi transport; induced upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1907506	1908553	+	orf19.4733	1907506	1908553	1	1907506	1908553	1907576	1908484	YMC2	orf19.12195|IPF22458.1|IPF11767.2|Contig4-2643_0001|orf6.2084|orf6.2186|CA0889|CaO19.4733|IPF11767	Predicted ORF in Assemblies 19, 20 and 21; Gcn4p-regulated; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1908483	1908750	-	ntar_178	1908483	1908750	1	1908750	1908483					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1908893	1910052	+	orf19.4734	1908893	1910052	1	1908893	1910052	1908930	1909979		orf19.12196|IPF18826.1|IPF11766.1|Contig4-2643_0004|orf6.2085|orf6.2187|CA0890|CaO19.4734|IPF11766	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1910136	1911529	+	orf19.4735	1910136	1911529	1	1910136	1911529	1910244	1911296		orf19.12197|IPF22444.1|IPF11764.2|Contig4-2643_0006|orf6.2086|CA0891|CaO19.12197|CaO19.4735|IPF11764	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1911435	1911781	-	ntar_179	1911435	1911781	1	1911781	1911435					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1911988	1913993	+	orf19.4736	1911988	1913993	1	1911988	1913993	1912123	1913778		orf19.12198|IPF22412.1|IPF19888.1|Contig4-2643_0008|Contig4-2643_0009|orf6.2087|CA0892|CaO19.4736|CaO19.12198|PHO8.5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1914685	1916784	+	orf19.4737	1914685	1916784	1	1914685	1916784	1914936	1916693	TPO3	orf19.12199|orf6.3649|YPR156|YGR138|DHA12|IPF11759.2|IPF10646.3|Contig4-2892_0021|orf6.2088|CA1943|IPF11759|CaO19.4737|IPF11759.3f	Possible role in polyamine transport; MFS-MDR family; transcription induced by Sfu1p, regulated upon white-opaque switching; decreased expression in hyphae compared to yeast-form cells; regulated by Nrg1p; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1916993	1918889	+	orf19.4738	1916993	1918889	1	1916993	1918889	1917067	1918743		orf19.12200|IPF22411.1|IPF10645.2|Contig4-2892_0001|orf6.3650|CA1944|CaO19.4738|CaO19.12200|IPF10645	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1918849	1921025	-	orf19.4739	1918849	1921025	1	1921025	1918849	1920976	1918970	MSS116	orf19.12201|IPF22389.1|IPF10643.2|Contig4-2892_0003|orf6.3651|CA1945|CaO19.4739|CaO19.12201	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1921097	1921864	-	orf19.4740	1921097	1921864	1	1921864	1921097	1921826	1921194		orf19.12202|IPF22476.1|IPF19937.1|Contig4-2447_0002|Contig4-2447_0003|orf6.3652|CA1946|CaO19.12202|CaO19.4740|IPF19937	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1921198	1921522	+	ntar_180	1921198	1921522	1	1921198	1921522	1921198	1921335			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1921949	1924126	+	orf19.4742	1921949	1924126	1	1921949	1924126	1922856	1923920		orf19.12204|IPF10637.1|IPF19297.2|Contig4-2037_0002|orf6.3654|orf6.403|CA1947|CaO19.4742|IPF10637	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1922090	1922673	-	orf19.4741	1922090	1922673	3	1922673|1922341|1922216	1922413|1922283|1922090	1922673	1922090		orf19.12203|IPF10638.2|IPF28263.1|Contig4-2037_0001|orf6.3653|CaO19.4741|CaO19.12203	Predicted ORF in Assemblies 19, 20 and 21; possibly C. albicans-specific [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1924028	1926210	-	orf19.4743	1924028	1926210	1	1926210	1924028	1926159	1924093	AFG1	orf19.12205|IPF14022.2|IPF10636.3|Contig4-2037_0003|orf6.3655|orf6.404|CA1948|CaO19.4743|AFG12|IPF14022	Protein not essential for viability; similar to S. cerevisiae Afg1p, which is a putative mitochondrial ATPase of the AAA family [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1926297	1928953	-	orf19.4744	1926297	1928953	1	1928953	1926297	1928615	1926408		orf19.12206|IPF14021.2|IPF18510.2|orf6.3656|orf6.4015|CA1949|CaO19.4744|IPF14021	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1928959	1930837	-	orf19.4746	1928959	1930837	1	1930837	1928959	1930727	1929099	JIP5	orf19.12208|IPF14019|IPF14019.1|IPF13928.2|orf6.3658|orf6.4016|CA1950|CaO19.4746	Protein not essential for viability; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1931275	1933015	+	orf19.4747	1931275	1933015	1	1931275	1933015	1931411	1933006	HEM14	orf19.12209|orf6.4017|orf6.3659|IPF19663.1|IPF19662.1|CA1951|CaO19.4747	Putative protoporphyrinogen oxidase involved in heme biosynthesis; predicted Kex2p substrate; transcription is regulated by iron; mRNA levels are decreased in a yfh1 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1932154	1933539	-	orf19.4748	1932154	1933539	1	1933539	1932154	1933452	1933057		orf19.12210|IPF18582.2|IPF13925.1|Contig4-2151_0009|orf6.3660|orf6.4018|CA2210|MSL1|CaO19.4748|U2B''	Putative U2B'' component of the U2 snRNP, involved in splicing; contains an RNA recognition motif (RRM); ortholog of S. cerevisiae MSL1; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1933778	1935640	+	orf19.4749	1933778	1935640	1	1933778	1935640	1933898	1935574		orf19.12211|IPF22427.1|IPF13921.2|Contig4-2151_0005|Contig4-2151_0007|Contig4-2151_0008|orf6.4019|CA2211|CaO19.4749|IPF13921	Predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression, regulated by Cyr1p, Ras1p, Efg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1936163	1938444	-	orf19.4750	1936163	1938444	1	1938444	1936163	1938354	1936252		orf19.12212|IPF16404.3|IPF13919.2|Contig4-2151_0001|orf6.4020|orf6.88|CA2212|CaO19.4750|IPF13919	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1938535	1939578	+	orf19.4751	1938535	1939578	1	1938535	1939578	1938588	1939475		orf19.12214|IPF22488.1|IPF16405.2|Contig4-1898_0001|orf6.4021|orf6.89|CA2213|RSM25|CaO19.4751|IPF16405	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1939437	1940022	-	orf19.4751.1	1939437	1940022	1	1940022	1939437	1939877	1939653			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1940231	1943194	-	orf19.4752	1940231	1943194	1	1943194	1940231	1942792	1940516	MSN4	orf19.12215|IPF22377.1|IPF9939.2|Contig4-1898_0007|Contig4-2609_0002|orf6.4022|CA2214|CaO19.12215|CaO19.4752|IPF9939	Putative zinc finger transcription factor; similar to S. cerevisiae Msn4p, but not a significant stress response regulator in C. albicans; partly complements STRE-activation defect of S. cerevisiae msn2 msn4 double mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1947493	1951816	+	orf19.4753	1947493	1951816	1	1947493	1951816	1948259	1951699	PFK26	orf19.12217|IPF17562.3|IPF9943.2|Contig4-1843_0004|orf6.1050|orf6.4023|CA2215|CaO19.4753	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1947497	1947873	-	ntar_181	1947497	1947873	1	1947873	1947497					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1952161	1953340	+	ntar_182	1952161	1953340	1	1952161	1953340	1952510	1952635			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1953280	1955035	-	orf19.4754	1953280	1955035	1	1955035	1953280	1954892	1953369	ZWF1	orf19.12218|IPF13060.2|IPF18011.3|Contig4-2455_0008|orf6.4024|orf6.4601|CA2634|CaO19.4754	Putative glucose-6-phosphate dehydrogenase; antigenic in murine infection; activity induced by O2 or oxidizing agents H2O2 or menadione; caspofungin repressed; macrophage induced; induced in core stress response; regulated by Gcn2p, Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1955571	1956026	-	ntar_183	1955571	1956026	1	1956026	1955571	1955885	1955718			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1955730	1956207	+	ntar_184	1955730	1956207	1	1955730	1956207					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1956359	1959551	-	orf19.4755	1956359	1959551	1	1959551	1956359	1959364	1956554	KEX2	orf19.12219|IPF22355.1|IPF13063.2|Contig4-2455_0002|orf6.4600|CA2633|CaO19.12219|CaO19.4755	Subtilisin-like protease (proprotein convertase), processes aspartyl proteinase Sap2p; required for hyphal growth and wild-type virulence in mouse systemic infection; functional homolog of S. cerevisiae Kex2p, which processes alpha-factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1959935	1960147	-	ntar_185	1959935	1960147	1	1960147	1959935					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1960367	1962187	+	orf19.4756	1960367	1962187	1	1960367	1962187	1960409	1962061		orf19.12220|IPF22404.1|IPF19763.1|Contig4-2725_0001|orf6.4599|CA6214|YTP1|CaO19.4756|CaO19.12220	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1962461	1964578	+	orf19.4757	1962461	1964578	1	1962461	1964578	1962576	1964405	NAR1	orf19.12221|IPF22395.1|IPF14388.2|Contig4-2557_0009|Contig4-2557_0010|orf6.4598|CA2632|CaO19.12221|CaO19.4757	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1964855	1966007	+	orf19.4758	1964855	1966007	1	1964855	1966007	1965098	1965838		orf19.12222|IPF22468.1|IPF14389.2|Contig4-2557_0006|orf6.4597|CA2631|CaO19.4758|CaO19.12222|IPF14389	Predicted ORF in Assemblies 19, 20 and 21; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1966084	1967184	-	orf19.4759	1966084	1967184	2	1967184|1966919	1967184|1966084	1966889	1966392	COX5	orf19.12223|IPF10910.2|IPF28262.1|COX5A|Contig4-2557_0005|orf6.4596|CA2630|CaO19.12223|CaO19.4759	Protein described as cytochrome oxidase subunit V; has putative regulatory element, upstream CCAAT box; macrophage/pseudohyphal-induced; repressed by nitric oxide; intron in 5'-UTR [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=A]
Ca21chr1	1967293	1969056	-	orf19.4760	1967293	1969056	1	1969056	1967293	1969056	1967593		orf19.12224|IPF18440.1|IPF10911.2|Contig4-2557_0004|orf6.179|orf6.4595|CA2629|CaO19.4760|IPF10911	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1969649	1972007	+	orf19.4761	1969649	1972007	1	1969649	1972007	1969837	1971810	HST1	orf19.12225|IPF10913.2|IPF19405.2|Contig4-2557_0001|orf6.178|orf6.4594|CA2628|CaO19.4761|SIR21|SIR22	Putative histone deacetylase, involved in regulation of white-opaque switching; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1971988	1973581	-	orf19.4763	1971988	1973581	1	1973581	1971988	1972938	1972258		orf19.12227|IPF10916|IPF22471.1|IPF10916.2|orf6.4592|CA2627|CaO19.12227|CaO19.4763	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1973677	1977482	+	orf19.4764	1973677	1977482	1	1973677	1977482	1973795	1977367		orf19.12228|IPF22512.1|IPF10918.2|Contig4-2669_0005|orf6.4591|CA2626|PAN2|CaO19.4764|CaO19.12228	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1977435	1979093	-	orf19.4765	1977435	1979093	1	1979093	1977435	1978893	1978234	PGA6	orf19.12229|orf6.4590|IPF10919.2|IPF17733.2|Contig4-2442_0006|CA2625|CCW12|CaO19.4765|IPF10919	Putative GPI-anchored cell wall protein of unknown function; transcriptionally induced under high iron conditions; upregulated upon Als2p depletion; mRNA binds to She3p and is localized to hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1980919	1984426	-	orf19.4766	1980919	1984426	1	1984426	1980919	1984359	1981057		ARG81|orf19.12230|IPF22523.1|IPF14033.2|Contig4-2442_0003|orf6.2542|CA1175|CaO19.12230|CaO19.4766|CA2624|ARG81.3eoc|IPF17734.2	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Arg81p, which is a transcription factor involved in the regulation of arginine-responsive genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1985142	1985658	-	ntar_186	1985142	1985658	1	1985658	1985142					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1985690	1986575	+	orf19.4767	1985690	1986575	1	1985690	1986575	1985765	1986505		ZCF28|orf19.12231|IPF22464.1|IPF14255.2|Contig4-2264_0005|orf6.2541|CA1174|CaO19.12231|CaO19.4767|IPF14255	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1986868	1988598	+	orf19.4768	1986868	1988598	1	1986868	1988598	1986872	1988467		orf19.12232|IPF22393.1|IPF14254.2|Contig4-2264_0001|orf6.2540|CA1173|CaO19.12232|CaO19.4768|IPF14254	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1991221	1993306	+	orf19.4769	1991221	1993306	1	1991221	1993306	1991586	1993130	IPT1	orf19.12233|IPF11674.2|IPF17541.2|IPF17540.2|Contig4-2253_0002|orf6.2538|orf6.2539|orf6.927|CA0228|CA6290|orf19.4770|IPT1.5f	Inositol phosphoryl transferase, involved in sphingolipid biosynthesis; catalyzes the synthesis of the most abundant sphingolipid, mannose-(inositol-P)2-ceramide, M(IP)2C, from MIPC; required for wild-type membrane localization of Cdr1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1995811	1996148	-	ntar_187	1995811	1996148	1	1996148	1995811	1996148	1996014			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1996456	1998858	+	orf19.4771	1996456	1998858	1	1996456	1998858	1996738	1998858		orf19.12234|IPF22382.1|IPF11667.2|orf6.3982|CA2187|MNN47|CaO19.4771|CaO19.12234|IPF11667	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	1999304	2001233	-	orf19.4772	1999304	2001233	1	2001233	1999304	2000741	1999578	SSU81	orf19.12235|IPF19613.2|IPF19612.1|Contig4-1937_0004|orf6.3983|orf6.920|SHO1|CA2188|CaO19.4772	Predicted adaptor protein involved in activation of MAP kinase-dependent signaling pathways; links response to oxidative stress to morphogenesis and cell wall biosynthesis; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2002059	2002295	+	ntar_188	2002059	2002295	1	2002059	2002295					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2002432	2002706	+	ntar_189	2002432	2002706	1	2002432	2002706					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2003676	2003904	+	ntar_190	2003676	2003904	1	2003676	2003904					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2004859	2006146	+	orf19.4773	2004859	2006146	1	2004859	2006146	2004893	2005990	AOX2	orf19.12237|AOX1b|IPF19101.2|IPF9420.2|Contig4-2351_0003|orf6.3984|CA2189|AOX2.3f	Alternative oxidase; induced by antimycin A, some oxidants; growth- and carbon-source-regulated; one of two isoforms (Aox1p and Aox2p); involved in cyanide-resistant respiratory pathway that is absent from S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2006859	2008657	+	orf19.4774	2006859	2008657	1	2006859	2008657	2007337	2008476	AOX1	orf6.3985|AOX1a|IPF22441.1|IPF9418.2|Contig4-2351_0001|CA2190|CaO19.4774|CaO19.12237	Alternative oxidase; low abundance; constitutively expressed; one of two isoforms (Aox1p and Aox2p); involved in a cyanide-resistant respiratory pathway present in plants, protists, and some fungi, although absent from S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2008450	2009364	-	ntar_191	2008450	2009364	1	2009364	2008450					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2009914	2012781	+	orf19.4775	2009914	2012781	1	2009914	2012781	2010391	2012676	CTA8	orf19.12238|IPF19046.2|IPF9417.2|Contig4-2247_0002|Contig4-2247_0004|orf6.1107|orf6.3986|CA2191|CaO19.4775|IPF9417|HSF1	Essential transcription factor, mediates heat shock transcriptional induction; in the absence of heat stress, Cta8p levels are modulated by growth temperature to regulate basal expression of genes involved in protein folding [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2014918	2017567	+	orf19.4776	2014918	2017567	1	2014918	2017567	2014937	2017567		LYS143|orf19.12240|IPF11774.2|IPF9416.3|Contig4-2888_0010|orf6.1106|orf6.3987|orf6.1105|CA6215|CaO19.4776|IPF9416	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Lys14p, which is a transcription factor involved in the regulation of lysine biosynthesis genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr1	2017546	2019674	-	orf19.4777	2017546	2019674	1	2019674	2017546	2019470	2017683	DAK2	orf19.12241|IPF22403.1|IPF11775.3|Contig4-2888_0009|orf6.1104|orf6.1906|CA0776|CaO19.4777|CA0311|DAK2.3eoc|IPF19048.1	Protein described as similar to dihydroxyacetone kinase; transcription is decreased upon yeast-hyphal switch; fluconazole-induced; caspofungin repressed; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2020201	2022557	+	orf19.4778	2020201	2022557	1	2020201	2022557	2020314	2022383		LYS142|orf19.12242|IPF22385.1|IPF11777.2|Contig4-2888_0007|orf6.1907|CA0777|CaO19.12242|CaO19.4778|IPF11777	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Lys14p, which is a transcription factor involved in the regulation of lysine biosynthesis genes; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2022386	2024542	-	orf19.4779	2022386	2024542	1	2024542	2022386	2024443	2022581		orf19.12243|orf6.1908|IPF12885.3|IPF12884.2|Contig4-2888_0005|Contig4-2888_0006|orf6.1423|CA0778|CaO19.4779|SGE11|IPF12884	Putative transporter; slightly similar to the Sit1p siderophore transporter; Gcn4p-regulated; fungal-specific (no human or murine homolog); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2024656	2024956	-	ntar_192	2024656	2024956	1	2024956	2024656					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2025217	2025500	-	ntar_193	2025217	2025500	1	2025500	2025217					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2025826	2027423	+	orf19.4780	2025826	2027423	1	2025826	2027423	2025952	2027325		orf19.12244|IPF12887.2|IPF28255.1|Contig4-2888_0004|orf6.1422|CA0474|CaO19.4780|CaO19.12244|IPF12887	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2027208	2028428	-	orf19.4781	2027208	2028428	1	2028428	2027208	2028376	2027363	GRP1	orf19.12245|IPF12888.1|IPF15705.2|Contig4-2888_0002|orf6.1421|orf6.4891|CA0473|GRE25|CaO19.4781	Protein similar to dihydroflavonol-4-reductases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2028608	2030198	-	orf19.4783	2028608	2030198	1	2030198	2028608	2030152	2028653		orf19.12247|IPF19867.1|IPF15706.1|Contig4-2888_0001|orf6.4893|orf6.1419|CA2831|CaO19.4783|IPF15706	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2031021	2034797	+	orf19.4784	2031021	2034797	1	2031021	2034797	2031132	2034725	CRP1	orf19.12248|CRD1|IPF22517.1|IPF19962.1|orf6.1418|orf6.4894|CA2832|CaO19.4784	Copper transporter of the plasma membrane; P1-type ATPase (CPx type); mediates Cu resistance; similar to proteins of Menkes and Wilson disease; copper-induced; Tbf1p-activated; suppresses Cu sensitivity of S. cerevisiae cup1 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2034700	2036008	-	orf19.4785	2034700	2036008	1	2036008	2034700	2035953	2034826	PTC1	orf19.12249|IPF22443.1|IPF19963.1|orf6.4895|CA2833|CaO19.12249|CaO19.4785	Putative protein phosphatase of the Type 2C-related family (serine/threonine-specific), similar to S. cerevisiae Ptc1p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2036683	2038629	+	orf19.4786	2036683	2038629	1	2036683	2038629	2036879	2038543	FGR43	orf19.12250|IPF22408.1|IPF12093.1|Contig4-2482_0003|orf6.4896|CA2834|CaO19.12250|CaO19.4786|IPF12093	Protein lacking an S. cerevisiae ortholog; transposon mutation affects filamentous growth; transcriptionally activated by Mnl1p under weak acid stress; possible spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2038894	2041319	+	orf19.4787	2038894	2041319	1	2038894	2041319	2038995	2041187		orf19.12251|IPF22380.1|IPF12091.2|Contig4-2482_0004|orf6.4897|CA2835|CaO19.12251|CaO19.4787|IPF12091	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2041222	2043954	-	orf19.4788	2041222	2043954	1	2043954	2041222	2043918	2041345	ARG5,6	orf19.12252|IPF22364.1|IPF12088.2|orf6.4898|CA2836|CaO19.12252|ARG5|6|CaO19.4788|"ARG5|6"	Arginine biosynthetic enzyme activities; in S. cerevisiae, processed into distinct polypeptides with acetylglutamate kinase (Arg6p) activity and acetylglutamate-phosphate reductase (Arg5p) activity; Gcn4p regulated; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2044719	2045612	-	orf19.4789	2044719	2045612	1	2045612	2044719	2045612	2044719		orf19.12253|IPF22459.1|IPF8340.1|Contig4-2744_0002|orf6.4899|CA2837|CaO19.4789|ALD97|CaO19.12253|IPF8340	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2045125	2045280	+	ntar_194	2045125	2045280	1	2045125	2045280					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2045988	2048993	-	orf19.4791	2045988	2048993	1	2048993	2045988	2048958	2046028		orf19.12255|IPF22538.1|IPF8339.2|Contig4-2744_0004|orf6.4901|CA2838|CaO19.12255|CaO19.4791|IPF8339	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2050033	2051926	-	orf19.4792	2050033	2051926	1	2051926	2050033	2051811	2050138		orf19.12256|IPF22407.1|IPF8336.2|Contig4-2744_0009|orf6.4902|CA2839|CaO19.4792|IPF8336	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2053289	2054013	+	ntar_195	2053289	2054013	1	2053289	2054013	2053478	2053618			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2054978	2055922	+	orf19.4793	2054978	2055922	1	2054978	2055922	2055044	2055643		orf19.12257|IPF22480.1|IPF20058.1|Contig4-1497_0003|Contig4-1844_0002|orf6.1469|CA0500|CaO19.4793|CaO19.12257|IPF20058	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2056034	2059614	-	orf19.4795	2056034	2059614	1	2059614	2056034	2059614	2056114		orf19.12259|IPF16501.2|IPF16767.2|Contig4-1525_0003|Contig4-1525_0004|Contig4-1844_0004|Contig4-3040_0002|orf6.1471|orf6.3054|CA0501|CaO19.4795|IPF16501	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	2060855	2061626	+	orf19.4796	2060855	2061626	1	2060855	2061626	2060917	2061447		IPF22527.1|IPF16764.2|Contig4-3040_0004|orf6.3055|CA1516|CaO19.4796|CAF20|IPF16764	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2061527	2064963	-	orf19.4798	2061527	2064963	1	2064963	2061527	2064662	2061786		orf19.12261|IPF22351.1|IPF11045.2|Contig4-3040_0006|orf6.3057|CA1517|EFR3|CaO19.12261|CaO19.4798|IPF11045	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2065350	2065583	-	ntar_196	2065350	2065583	1	2065583	2065350					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2065898	2067809	+	orf19.4799	2065898	2067809	1	2065898	2067809	2065935	2067767		orf19.12262|IPF22401.1|IPF11040.2|Contig4-3040_0009|Contig4-3040_0010|orf6.3058|CA1518|CaO19.4799|CEF1|CaO19.12262|IPF11040	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2067950	2070404	+	orf19.4800	2067950	2070404	1	2067950	2070404	2067976	2070333	RIM20	orf19.12263|ENX3|IPF22375.1|IPF11037.2|Contig4-3040_0011|orf6.3059|CA1519|CaO19.4800|CaO19.12263	Protein involved in the pH response pathway; binds to the transcription factor Rim101p and may serve as a scaffold to facilitate the C-terminal proteolytic cleavage that activates Rim101p; required for alkaline pH-induced hyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2070510	2072170	+	orf19.4801	2070510	2072170	1	2070510	2072170	2070537	2071934		orf19.12264|IPF22429.1|IPF11035.2|Contig4-3040_0012|Contig4-3040_0013|orf6.3060|CA1520|CaO19.12264|MOD5|CaO19.4801|IPF11035	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2072038	2073501	-	orf19.4802	2072038	2073501	1	2073501	2072038	2073469	2072195	FTH1	orf19.12265|orf6.3061-1|orf6.3061-2|IPF6122.3|IPF11034.2|Contig4-3040_0016|Contig4-3040_0017|orf6.3061|orf6.5208|CA1521|CaO19.4802	Protein not essential for viability; similar to S. cerevisiae Fth1p (putative high affinity iron transporter for intravacuolar stores of iron); repressed by Sfu1p, amphotericin B, caspofungin; induced by alkaline pH, ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2074984	2075361	+	orf19.4803	2074984	2075361	1	2074984	2075361	2074984	2075361			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2075465	2076865	+	orf19.4804	2075465	2076865	1	2075465	2076865	2075465	2076865	LIP2	orf19.12267|IPF22428.1|IPF6120.2|Contig4-3040_0021|orf6.5210|CA3068|CaO19.12267|CaO19.4804	Secreted lipase; member of a differentially expressed lipase gene family; expressed in alimentary tract, but not oral tissue, during mouse oral infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2077587	2080423	+	orf19.4805	2077587	2080423	1	2077587	2080423	2077715	2080315		orf19.12268|IPF22362.1|IPF6117.2|Contig4-3040_0025|orf6.5211|RSN1|CA3069|CaO19.12268|CaO19.4805|IPF6117	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2080829	2082137	+	orf19.4807	2080829	2082137	1	2080829	2082137	2080938	2081912		orf19.12270|IPF22452.1|IPF6114.2|Contig4-3040_0028|orf6.5213|CA3070|PPA2|CaO19.12270|CaO19.4807	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2082099	2087246	-	orf19.4808	2082099	2087246	1	2087246	2082099	2087100	2082172	NUP188	orf19.12271|IPF22490.1|IPF6113.2|Contig4-3040_0030|orf6.5214|CA3071|CaO19.4808|CaO19.12271	Transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2087393	2088861	+	orf19.4809	2087393	2088861	1	2087393	2088861	2087469	2088764	ERG12	orf19.12272|IPF22438.1|IPF6109.2|Contig4-2674_0002|orf6.5215|CA3072|CaO19.4809|CaO19.12272	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2088781	2089907	-	orf19.4811	2088781	2089907	1	2089907	2088781	2089856	2088870		orf19.12274|IPF22450.1|IPF6108.2|Contig4-2674_0003|orf6.5217|CA3073|CaO19.4811|CaO19.12274|IPF6108	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2089980	2090527	+	orf19.4812	2089980	2090527	1	2089980	2090527	2090037	2090444		orf19.12275|IPF22504.1|IPF6106.2|Contig4-2674_0005|orf6.5218|CA3074|CaO19.4812|CaO19.12275|IPF6106	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2090440	2092195	-	orf19.4813	2090440	2092195	1	2092195	2090440	2092089	2090497	GUA1	orf19.12276|IPF22419.1|IPF6105.2|Contig4-2674_0006|orf6.5219|CA3075|CaO19.12276|CaO19.4813|IPF6105	Predicted ORF in Assemblies 19, 20 and 21; soluble protein in hyphae; flucytosine induced; macrophage-downregulated protein abundance; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2092733	2093068	+	orf19.4814	2092733	2093068	1	2092733	2093068	2092733	2093068		orf19.12277|IPF22495.1|IPF6101.2|Contig4-2674_0008|orf6.5220|CA3076|CaO19.12277|CaO19.4814|IPF6101|IPF6101.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2093265	2094756	+	orf19.4815	2093265	2094756	1	2093265	2094756	2093301	2094701	YTM1	orf19.12278|IPF22434.1|IPF6100.2|Contig4-2674_0010|orf6.5221|CA3077|CaO19.12278|CaO19.4815	Protein similar to S. cerevisiae Ytm1p, which is involved in biogenesis of the large ribosomal subunit; transposon mutation affects filamentous growth; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2094614	2096328	-	orf19.4816	2094614	2096328	1	2096328	2094614	2096110	2094761		orf19.12279|IPF22435.1|IPF19970.1|Contig4-2674_0011|Contig4-2674_0012|orf6.5222|CA3078|CaO19.4816|CaO19.12279|IPF19970	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2096545	2097919	+	orf19.4817	2096545	2097919	1	2096545	2097919	2096717	2097637	RAM2	orf19.12280|IPF22454.1|IPF15519.2|Contig4-2100_0001|orf6.5223|CA3079|CaO19.4817|CaO19.12280	Alpha subunit of heterodimeric protein geranylgeranyltransferase type I and farnesyltransferase; a-specific transcription; lovastatin and fluconazole regulated; GGTase I enzyme binds zinc, is Mg-dependent; Cdc42p is GGTase I substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2100762	2102081	-	ntar_197	2100762	2102081	1	2102081	2100762	2101358	2101161			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2102365	2104312	+	orf19.4818	2102365	2104312	1	2102365	2104312	2102705	2104288		orf19.12281|IPF22477.1|IPF22449.1|IPF14797.2|IPF14799.2|Contig4-2177_0002|Contig4-2177_0004|orf6.2401|CA1082|IPF14797.5f|IPF14797	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2104356	2104712	+	orf19.4819	2104356	2104712	1	2104356	2104712	2104356	2104712		orf19.12282|IPF22510.1|IPF28271.1|orf6.2400|CaO19.12282|CaO19.4819	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2105008	2105941	-	ntar_198	2105008	2105941	1	2105941	2105008	2105941	2105720			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2107046	2108809	+	orf19.4820	2107046	2108809	1	2107046	2108809	2107090	2108712		orf19.12283|IPF22417.1|IPF14710.1|Contig4-2746_0015|Contig4-2746_0017|orf6.2399|CA1080|CaO19.4820|CaO19.12283|IPF14710	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2108870	2110276	-	orf19.4821	2108870	2110276	1	2110276	2108870	2110276	2108870	LIP1	orf19.12284|IPF22431.1|IPF14712.2|Contig4-2746_0012|Contig4-2746_0014|orf6.2398|CA1079|CaO19.12284|CaO19.4821	Secreted lipase, member of a lipase gene family whose members are expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2111781	2113178	-	orf19.4822	2111781	2113178	1	2113178	2111781	2113178	2111781	LIP10	orf19.12285|IPF22423.1|IPF11790.1|Contig4-2746_0010|orf6.7389|CA4757|CaO19.4822|CaO19.12285	[NOT TRANSCRIBED?] Secreted lipase, member of a lipase gene family whose members are expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2114137	2116063	-	orf19.4823	2114137	2116063	1	2116063	2114137	2115617	2114226	LIP6	orf19.12286|IPF22433.1|IPF11788.2|Contig4-2746_0007|orf6.7388|CA4756|CaO19.4823|CaO19.12286	Secreted lipase, member of family of lipase genes expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment; induced on adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2117570	2118931	+	orf19.4824	2117570	2118931	1	2117570	2118931	2117999	2118817		orf19.12287|IPF22463.1|IPF11480.2|Contig4-3078_0040|orf6.7387|CA4755|CaO19.12287|CaO19.4824|IPF11480	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2118807	2119384	-	orf19.4825	2118807	2119384	1	2119384	2118807	2119345	2118881		orf19.12288|IPF22489.1|IPF11479.1|Contig4-3078_0039|orf6.7386|CA4754|CaO19.4825|FMC1|CaO19.12288|IPF11479	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2120369	2121874	+	orf19.4826	2120369	2121874	2	2120369|2120688	2120468|2121874	2120442	2121755	IDH1	orf19.12289|IPF22447.1|IPF11475.1|Contig4-3078_0035|orf6.7385|CA4753|IDH1.3	Predicted ORF in Assemblies 19, 20 and 21; soluble protein in hyphae; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2122136	2123675	+	orf19.4827	2122136	2123675	1	2122136	2123675	2122303	2123589	ADE12	orf19.12290|IPF22437.1|IPF11474.1|Contig4-3078_0033|orf6.7384|CA4752|CaO19.12290|CaO19.4827	Predicted enzyme of adenine biosynthesis; upregulated in biofilm; decreased expression in hyphae compared to yeast-form cells; not induced during GCN response, in contrast to the S. cerevisiae ortholog, which is induced by Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2123952	2126017	+	orf19.4828	2123952	2126017	2	2123952|2124481	2124414|2126017	2124372	2125967		orf19.12291|IPF22426.1|IPF11473.2|Contig4-3078_0031|orf6.7383|CA4751|CaO19.4828|CaO19.12291|IPF11473	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2126385	2128841	+	orf19.4829	2126385	2128841	1	2126385	2128841	2126419	2128704	DOA1	orf19.12292|IPF22371.1|IPF4477.2|Contig4-3078_0030|orf6.7382|CA4750|CaO19.12292|CaO19.4829|IPF4477	Protein with WD-repeats and a mellitin-like sequence, similar to S. cerevisiae Doa1p, which is involved in ubiquitin-mediated protein degradation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2128679	2129122	-	orf19.4830	2128679	2129122	1	2129122	2128679	2129071	2128739		orf19.12293|IPF22516.1|IPF4478.1|Contig4-3078_0029|orf6.7381|CaO19.4830|CaO19.12293	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2129771	2131460	+	orf19.4831	2129771	2131460	1	2129771	2131460	2129818	2131359		orf19.12294|IPF22422.1|IPF4481.1|Contig4-3078_0026|orf6.7380|CA4749|CaO19.12294|CFA1|CaO19.4831|IPF4481	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2132245	2134193	+	orf19.4833	2132245	2134193	1	2132245	2134193	2132388	2134043	MLS1	orf19.12296|IPF22415.1|IPF4483.1|Contig4-3078_0024|orf6.7378|CA4748|CaO19.12296|CaO19.4833	Malate synthase; enzyme of the glyoxylate cycle; peroxisomal; no mammalian homolog; transcription is induced upon phagocytosis by macrophage; regulated upon white-opaque switching; biofilm-repressed; strong oxidative stress induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2134295	2134999	+	orf19.4834	2134295	2134999	1	2134295	2134999	2134295	2134999		orf19.12297|IPF22473.1|IPF4484.1|Contig4-3078_0022|Contig4-3078_0023|orf6.7377|CA4747|CaO19.12297|CaO19.4834|IPF4484	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2134941	2136662	-	orf19.4835	2134941	2136662	1	2136662	2134941	2136601	2135018		orf19.12298|IPF22416.1|IPF4485.1|Contig4-3078_0021|orf6.7376|CA4746|CaO19.4835|CaO19.12298|IPF4485	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2136843	2138458	+	orf19.4836	2136843	2138458	1	2136843	2138458	2137047	2138381	URA1	orf19.12299|IPF22436.1|IPF4487.2|Contig4-3078_0020|orf6.7375|CA4745|CaO19.12299|CaO19.4836	Dihydroorotate dehydrogenase (DHODH); enzyme of de novo pyrimidine biosynthesis; putative bipartite mitochondrial targeting motif, membrane spanning region; transcription is regulated upon yeast-hyphal switch, or by Nrg1p, Mig1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2138496	2139715	-	orf19.4837.1	2138496	2139715	1	2139715	2138496	2139134	2138814			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2138538	2139494	+	orf19.4837	2138538	2139494	1	2138538	2139494	2138563	2139396		orf19.12300|IPF22462.1|IPF4489.2|Contig4-3078_0019|orf6.7374|CA4744|CaO19.4837|CaO19.12300|IPF4489	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2139804	2140842	+	orf19.4839	2139804	2140842	1	2139804	2140842	2139855	2140751		orf19.12302|IPF22455.1|IPF4491.1|Contig4-3078_0017|orf6.7372|CA4743|CaO19.4839|CaO19.12302|IPF4491	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2140745	2141951	-	orf19.4841	2140745	2141951	1	2141951	2140745	2141907	2140828	SHY1	orf19.12304|IPF22446.1|IPF4494.1|Contig4-3078_0016|orf6.7370|CA4742|CaO19.4841|CaO19.12304	Transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2142313	2142825	+	orf19.4842	2142313	2142825	1	2142313	2142825	2142338	2142679		orf19.12305|IPF22509.1|IPF4495.1|Contig4-3078_0014|orf6.7369|CaO19.12305|CaO19.4842	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2142655	2145204	-	orf19.4843	2142655	2145204	1	2145204	2142655	2144968	2142773		orf19.12306|IPF22381.1|IPF4496.1|Contig4-3078_0013|orf6.7368|CA4741|CaO19.4843|CaO19.12306|IPF4496	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2145320	2146726	-	orf19.4844	2145320	2146726	1	2146726	2145320	2146676	2145531		orf19.12307|IPF22442.1|IPF4497.2|Contig4-3078_0012|orf6.7367|CA4740|CaO19.12307|CaO19.4844|IPF4497	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2146926	2147843	-	orf19.4845	2146926	2147843	1	2147843	2146926	2147583	2147062		orf19.12308|IPF22486.1|IPF4498.2|Contig4-3078_0010|orf6.7366|CA4739|CaO19.12308|CaO19.4845|IPF4498	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2148217	2149566	+	orf19.4846	2148217	2149566	1	2148217	2149566	2148256	2149497		orf19.12309|IPF4500|IPF22439.1|IPF4500.1|Contig4-3078_0008|orf6.7365|CA4738|CaO19.12309|CaO19.4846	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2148453	2148905	-	orf19.4847	2148453	2148905	1	2148905	2148453	2148905	2148453		IPF22481.1|IPF4499.1|orf6.7364	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2149739	2154111	+	orf19.4848	2149739	2154111	1	2149739	2154111	2149827	2154029	SKI3	orf19.12311|IPF22503.1|IPF4502.1|Contig4-3078_0006|orf6.7363|CA4737|CaO19.4848|CaO19.12311	Protein similar to S. cerevisiae Ski3p, which is required for repressing propagation of dsRNA viruses [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2154052	2155285	-	orf19.4849	2154052	2155285	1	2155285	2154052	2155073	2154090		orf19.12312|IPF22448.1|IPF4503.2|Contig4-3078_0005|orf6.7362|CA4736|STS1|CaO19.12312|CaO19.4849|IPF4503	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2155773	2155967	+	ntar_199	2155773	2155967	1	2155773	2155967					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2155974	2158129	-	orf19.4850	2155974	2158129	1	2158129	2155974	2157940	2156090		orf19.12313|IPF22396.1|IPF7726.2|Contig4-2920_0017|Contig4-3078_0001|orf6.7361|CA4735|CaO19.4850|CaO19.12313|IPF7726	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2158508	2160003	-	orf19.4851	2158508	2160003	1	2160003	2158508	2159971	2158787	TFA1	orf19.12314|IPF22440.1|IPF7729.1|Contig4-2920_0015|orf6.7360|CA4734|CaO19.12314|CaO19.4851	Protein with polyglutamate motifs and abundant Ser/Thr residues; described as a subunit of TFIIE, which is a basal transcription initiation factor of RNA Polymerase II [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2161277	2163420	+	orf19.4853	2161277	2163420	1	2161277	2163420	2161492	2163231	HCM1	orf19.12316|orf6.7358|IPF22406.1|IPF7732.2|Contig4-2920_0014|CA4733|CaO19.4853|CaO19.12316|IPF7732	Protein with forkhead domain; similar to S. cerevisiae Hcm1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2163383	2164133	-	orf19.4855	2163383	2164133	1	2164133	2163383	2164013	2163561	BUD31	orf19.12318|IPF22484.1|IPF7733.1|Contig4-2920_0013|orf6.7356|CA4732|CaO19.4855|CaO19.12318|IPF7733	Not subject to mating-type regulation, in contrast to the S. cerevisiae ortholog, which has a role in specification of the bud site [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2163534	2163706	+	ntar_200	2163534	2163706	1	2163534	2163706					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2164292	2164386	-	ts(cga)1	2164292	2164386	2	2164386|2164336	2164350|2164292				tS(CGA)1.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2164391	2164661	+	ntar_201	2164391	2164661	1	2164391	2164661					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2166143	2167558	+	orf19.4856	2166143	2167558	1	2166143	2167558	2166143	2167558	LIP3	orf19.12319|IPF22432.1|IPF7736.2|Contig4-2920_0010|orf6.7355|CA4731|CaO19.4856|CaO19.12319	Secreted lipase, member of a lipase gene family whose members are expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2167588	2168979	-	orf19.4857	2167588	2168979	1	2168979	2167588	2168519	2167701		orf19.12320|IPF7737.2|IPF28260.1|Contig4-2920_0009|orf6.7354|CA4730|CaO19.12320|CaO19.4857|IPF7737	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2169433	2169628	+	ntar_202	2169433	2169628	1	2169433	2169628					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2169745	2172959	+	orf19.4858	2169745	2172959	1	2169745	2172959	2169829	2172714	VPS41	orf19.12321|orf19.12322|orf19.12323|IPF12249.2|IPF12250.3|IPF28261.1|IPF28247.1|IPF12252.2|IPF28264.1|Contig4-2920_0005|Contig4-2920_0006|orf6.7353|orf6.7352|orf6.687|CA4729|CA4728|orf19.4859|orf19.4860|VAM2|VPS41.5f	Protein similar to S. cerevisiae Vps41p, which is involved in vacuole organization and biogenesis; transposon mutation affects filamentous growth; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2172733	2173628	-	ntar_203	2172733	2173628	1	2173628	2172733					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2173072	2173884	+	orf19.4861	2173072	2173884	1	2173072	2173884	2173072	2173884		orf19.12324|IPF12253.1|IPF19185.1|Contig4-2920_0002|orf6.688|orf6.7351|CA4727|CaO19.4861|IPF12253	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2173815	2174898	-	orf19.4862	2173815	2174898	1	2174898	2173815	2174808	2174212		orf19.12326|IPF12255.2|IPF16153.2|Contig4-1868_0003|orf6.689|orf6.7349|CaO19.4862|CA4726|IPF12255	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2173946	2174230	+	orf19.4861.1	2173946	2174230	1	2173946	2174230	2173946	2174230		IPF12254.2|IPF19184.1|orf6.7350	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2174933	2175738	+	orf19.4862.2	2174933	2175738	2	2174933|2175235	2175133|2175738	2175074	2175498		IPF16152.1|IPF12257.1|Contig4-1868_0004|CA4725|PET100	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2175496	2178351	-	orf19.4863	2175496	2178351	1	2178351	2175496	2178173	2175663	PDC2	orf19.12327|IPF16151.2|IPF12258.2|Contig4-2286_0003|Contig4-2286_0005|orf6.442|orf6.690|orf6.7348|CA4724|CTA5|CaO19.4863	Transcriptional regulator of pyruvate decarboxylase; contains a putative C-terminal activation domain, Glu- and Pro-rich; complements glucose utilization defect of S. cerevisiae pdc2 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2178707	2180075	-	orf19.4864	2178707	2180075	1	2180075	2178707	2179911	2178997		orf19.12328|IPF18177.1|IPF16983.2|Contig4-2286_0002|orf6.441|orf6.7347|CA4723|YJU3|CaO19.4864|IPF18177	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2180919	2183131	+	orf19.4865	2180919	2183131	1	2180919	2183131	2181078	2182934		orf19.12329|IPF15617.2|IPF16984.3|Contig4-2255_0013|orf6.440|orf6.7346|CA4722|SAC1|CaO19.4865	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2183131	2185581	-	orf19.4866	2183131	2185581	1	2185581	2183131	2185137	2183344	CPP1	orf19.12330|IPF15616.2|IPF19180.2|Contig4-2255_0001|orf6.707|orf6.7345|CA4721|CaO19.4866	MAPK phosphatase of the VH1 family; regulates Cst20p-Hst7p-Cek1p-Cph1p hyphal growth pathway; required for wild-type virulence in mouse systemic infection; C516 is active site Cys; antigenic in human thrush; more mRNA in yeast than hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2185611	2186127	-	ntar_204	2185611	2186127	1	2186127	2185611					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2185652	2186147	+	ntar_205	2185652	2186147	1	2185652	2186147					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2189021	2192841	-	orf19.4867	2189021	2192841	1	2192841	2189021	2192696	2189160	SWE1	orf19.12331|IPF10223.3|IPF28274.1|Contig4-1510_0001|Contig4-1510_0003|Contig4-2622_0001|orf6.2582|orf6.706|CA1200|CaO19.4867|IPF10223|IPF10223.2	Putative protein kinase with a role in control of growth and morphogenesis, required for full virulence; mutant cells are small, rounded, and sometimes binucleate; not required for filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2194863	2197051	+	orf19.4869	2194863	2197051	1	2194863	2197051	2195405	2196958	SFU1	orf19.12333|orf6.2584|IPF22421.1|IPF19906.1|Contig4-2622_0003|Contig4-2622_0004|CA1201|CaO19.12333|CaO19.4869|IPF19906	Transcriptional regulator of iron-responsive genes; represses some iron utilization genes when iron is present; not required for wild-type hyphal growth; has two GATA1-like zinc fingers separated by Cys-rich iron-sensing region [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2197121	2198925	+	orf19.4870	2197121	2198925	1	2197121	2198925	2197121	2198815	DBP3	orf19.12334|IPF10215.2|IPF17356.3|Contig4-2619_0001|Contig4-2622_0005|orf6.2585|orf6.3829|CA1202|CaO19.4870	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2199550	2201906	+	orf19.4871	2199550	2201906	1	2199550	2201906	2199912	2201654	ERO1	orf19.12335|IPF17353.3|IPF13354.2|Contig4-2619_0004|Contig4-2619_0005|orf6.2586|orf6.3830|CA2076|CaO19.4871	Protein described as similar to S. cerevisiae Ero1p, which has a role in formation of disulfide bonds in the endoplasmic reticulum; fluconazole-induced; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2202256	2203107	+	orf19.4872	2202256	2203107	1	2202256	2203107	2202256	2203107		orf19.12336|IPF13353|IPF22461.1|IPF13353.1|Contig4-2619_0009|orf6.3831|CA2077|CaO19.12336|CaO19.4872	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2203490	2204310	-	orf19.4873	2203490	2204310	1	2204310	2203490	2204101	2203589		orf19.12337|IPF17929.2|IPF13352.1|Contig4-2619_0010|orf6.113|orf6.3832|CA2078|CaO19.4873|IPF13352	Predicted ORF in Assemblies 19, 20 and 21; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2205522	2207662	-	orf19.4874	2205522	2207662	1	2207662	2205522	2207407	2205587	MNN3	orf19.12338|IPF22402.1|IPF13350.2|Contig4-2619_0014|Contig4-2619_0015|orf6.112|orf6.3833|CA2079|CaO19.4874|MNN23	Predicted Golgi alpha-1,2-mannosyltransferase; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2208225	2209486	+	orf19.4875	2208225	2209486	1	2208225	2209486	2208671	2209159		orf19.12339|IPF22483.1|IPF9693.2|orf6.3834|CA2080|CaO19.4875|CWC21|CaO19.12339|IPF9693	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2209365	2212097	-	orf19.4878	2209365	2212097	1	2212097	2209365	2212048	2209502		orf19.12342|IPF22361.1|IPF9699.2|orf6.3837|CA2081|CaO19.12342|CaO19.4878|IPF9699	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2212150	2212927	-	orf19.4879.2	2212150	2212927	2	2212927|2212757	2212867|2212150	2212873	2212390	NTF2	IPF22508.1|IPF9700.2|Contig4-2738_0001|CA2082	ORF Predicted by Annotation Working Group; regulated by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2214100	2216268	+	orf19.4880	2214100	2216268	1	2214100	2216268	2214100	2216268		orf19.12344|IPF17533.2|IPF9703.2|IPF17532.3|Contig4-2738_0005|Contig4-2738_0006|orf6.3839|orf6.3840|orf6.1625|CA0598|CA6291|orf19.4881|CaO19.4880|YFW5|IPF9703.5f|IPF9703	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	2215891	2217406	-	orf19.4882	2215891	2217406	1	2217406	2215891	2217342	2216488		orf19.12345|IPF9704.2|IPF28259.1|Contig4-2738_0007|orf6.1624|orf6.3841|CA0597|TFA2|CaO19.4882|IPF9704	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2217599	2218337	+	ntar_206	2217599	2218337	1	2217599	2218337					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2217881	2220290	-	orf19.4883	2217881	2220290	1	2220290	2217881	2220202	2217971		orf19.12346|IPF9706.2|IPF18549.2|Contig4-2738_0012|orf6.1623|orf6.3842|CA0596|CaO19.4883|IPF9706	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2222244	2222420	-	ntar_207	2222244	2222420	1	2222420	2222244					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2228559	2233168	+	orf19.4884	2228559	2233168	1	2228559	2233168	2230537	2232894	WOR1	orf19.12348|IPF22376.1|IPF15255.2|Contig4-2464_0001|orf6.3050|CA1512|EAP2|TOS9|YEL007W|CaO19.4884|CaO19.12348|IPF15255	Transcriptional regulator ("master switch") of white-opaque phenotypic switching; required to establish and maintain the opaque state; opaque-specific, nuclear; regulates its own expression; suggested role in regulation of adhesion factors [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2236338	2237713	+	orf19.4885	2236338	2237713	1	2236338	2237713	2236380	2237303	MIR1	orf19.12349|IPF22456.1|IPF7536.2|Contig4-2934_0003|orf6.3051|CA1513|CaO19.4885|CaO19.12349	Putative mitochondrial phosphate transporter; caspofungin repressed; expression is increased in a fluconazole-resistant isolate; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2239176	2239892	+	orf19.4886	2239176	2239892	1	2239176	2239892	2239176	2239892		orf19.12350|IPF22472.1|IPF7539.1|Contig4-2934_0006|orf6.3052|CA1514|CaO19.12350|CaO19.4886|IPF7539	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2240150	2242751	-	orf19.4887	2240150	2242751	1	2242751	2240150	2242520	2240214	ECM21	orf19.12352|IPF18663.2|IPF7541.3|Contig4-2934_0009|orf6.3053|orf6.3331|ECM21.3|CA1707|CaO19.4887|CA1515|IPF18663.1	Protein not essential for viability; similar to S. cerevisiae Ecm21p (may have cell wall role); alkaline upregulated by Rim101p; fluconazole induced; caspofungin repressed; downregulated in azole-resistant strain overexpressing MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2245376	2246489	+	orf19.4888	2245376	2246489	1	2245376	2246489	2245436	2246269		orf19.12353|IPF22460.1|IPF7543.2|Contig4-2934_0015|orf6.3332|CA1708|CaO19.12353|YRA1|CaO19.4888|IPF7543	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2246273	2248737	-	orf19.4889	2246273	2248737	1	2248737	2246273	2248267	2246513		orf19.12354|IPF22405.1|IPF7544.2|Contig4-2934_0016|orf6.3333|CA1709|HOL1|CaO19.4889|CaO19.12354|HOL2	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2249393	2252567	-	orf19.4890	2249393	2252567	1	2252567	2249393	2252473	2249543	CLA4	orf19.12355|IPF15972.3|IPF16297.2|Contig4-2934_0017|orf6.3334|orf6.53|CA1710|CaO19.4890	S/T kinase of Ste20p family; required for wild-type filamentous growth and for wild-type organ colonization and virulence in mouse systemic infection; role in chlamydospore formation; functional homolog of S. cerevisiae Cla4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2252793	2252950	-	ntar_208	2252793	2252950	1	2252950	2252793					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2255428	2257108	-	orf19.4892	2255428	2257108	1	2257108	2255428	2256855	2255638	TPK1	orf19.12357|IPF12285.2|IPF18622.2|Contig4-2955_0006|orf6.3336|orf6.4228|CA2355|TPK3|CaO19.4892	Catalytic subunit of cAMP-dependent protein kinase (PKA), isoform of Tpk2p; involved in control of morphogenesis and stress response; wild-type nuclear localization requires Bcy1p; produced during stationary but not exponential growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2259227	2263829	-	orf19.4893	2259227	2263829	1	2263829	2259227	2263716	2259391		orf19.12358|IPF12282|IPF22500.1|IPF12282.2|Contig4-2955_0011|Contig4-2955_0014|orf6.4229|CA2356|CaO19.12358|CaO19.4893	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2264029	2264907	-	orf19.4894	2264029	2264907	1	2264907	2264029	2264847	2264113		orf19.12359|IPF22469.1|IPF8957.2|IPF8957|Contig4-2955_0017|orf6.4230|CA2357|CaO19.12359|CaO19.4894	Protein of unknown function, has similarity to S. cerevisiae Yer010cp, which is a protein of unknown function belonging to the prokaryotic RraA family; decreased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2265040	2265953	-	orf19.4895	2265040	2265953	1	2265953	2265040	2265944	2265123		orf19.12360|IPF22453.1|IPF8953.2|Contig4-2955_0019|Contig4-2955_0021|orf6.4231|CA2358|CaO19.12360|CaO19.4895|IPF8953	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2266205	2267112	-	orf19.4896	2266205	2267112	1	2267112	2266205	2267063	2266341		orf19.12361|IPF22470.1|IPF8952.1|Contig4-2955_0022|orf6.4232|CA2359|RPA34|CaO19.12361|CaO19.4896|IPF8952	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2267364	2268506	-	orf19.4897	2267364	2268506	1	2268506	2267364	2268407	2267445		orf19.12362|IPF22451.1|IPF8951.2|Contig4-2955_0023|orf6.4233|CA2360|CaO19.4897|CaO19.12362|IPF8951	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2268633	2269501	-	orf19.4898	2268633	2269501	1	2269501	2268633	2269357	2268668		orf19.12363|IPF8950.1|IPF28258.1|Contig4-2955_0025|orf6.4234|CA2361|CaO19.12363|CaO19.4898|IPF8950	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2271539	2274379	+	orf19.4899	2271539	2274379	1	2271539	2274379	2271539	2274379	GCA1	orf19.12365|MP190|IPF22352.1|IPF8948.2|AMYG1|Contig4-2932_0006|Contig4-2955_0029|orf6.2026|orf6.4236|orf6.5799|orf6.649|CA0855|CaO19.4899	Predicted extracellular or plasma membrane-associated glucoamylase; promotes biofilm matrix formation; possible adhesin; gene is transcribed during rat oral infection; transcription is regulated by carbohydrates, pH, galactose [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2273092	2273321	-	ntar_209	2273092	2273321	1	2273321	2273092					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2276289	2279044	+	orf19.4900	2276289	2279044	1	2276289	2279044	2276399	2278885		orf19.12366|IPF17635.3|IPF8854.2|Contig4-2409_0001|orf6.2025|orf6.4237|CA0854|CaO19.4900|IPF8854	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2278801	2279364	-	ntar_210	2278801	2279364	1	2279364	2278801					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2279768	2281146	+	orf19.4901	2279768	2281146	1	2279768	2281146	2280112	2281146		orf19.12367|IPF18850.1|Contig4-2409_0004|orf6.2024|orf6.2023|orf6.1621|CA0595|CA6292|orf19.4902|CaO19.4901|IPF8856.5f|IPF8856|IPF8856.2	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.4902 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	2281308	2281916	+	ntar_211	2281308	2281916	1	2281308	2281916					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2281961	2282224	-	ntar_212	2281961	2282224	1	2282224	2281961					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2282064	2283498	+	orf19.4903	2282064	2283498	1	2282064	2283498	2282361	2283422		orf19.12368|IPF8860.1|IPF28257.1|Contig4-2762_0010|orf6.1620|CA0594|CaO19.12368|GPI12|CaO19.4903|IPF8860	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2283263	2284812	-	orf19.4904	2283263	2284812	1	2284812	2283263	2284784	2283444		orf19.12369|IPF22430.1|IPF8861.2|Contig4-2762_0009|orf6.1619|CA0593|CaO19.4904|ARP6|CaO19.12369	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2285421	2287271	+	orf19.4905	2285421	2287271	1	2285421	2287271	2285620	2287173		orf19.12370|IPF8862.2|IPF28254.1|Contig4-2762_0006|orf6.1618|CA0592|CaO19.4905|IPF8862	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2287182	2289577	-	orf19.4906	2287182	2289577	1	2289577	2287182	2289577	2287271		orf19.12372|IPF17082.3|IPF8866.2|Contig4-2762_0005|orf6.1617|orf6.430|orf6.699|CA0076|CaO19.4906|IPF8866	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2292642	2295120	-	orf19.4907	2292642	2295120	1	2295120	2292642	2294809	2292992		orf19.12373|IPF22400.1|IPF17283.2|Contig4-2762_0012|orf6.3754|CA2021|CaO19.12373|CaO19.4907|IPF17283	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon fluphenazine treatment; possibly transcriptionally regulated by Tac1p; induced by nitric oxide; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2295403	2295622	-	ntar_213	2295403	2295622	1	2295622	2295403					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2295578	2295913	+	orf19.4908	2295578	2295913	1	2295578	2295913	2295578	2295913		orf19.12374|IPF22515.1|IPF9610.2|Contig4-2018_0002|orf6.3755|CaO19.12374|CaO19.4908	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2296678	2299449	-	orf19.4909	2296678	2299449	1	2299449	2296678	2299136	2296938	CBK1	orf19.12375|IPF22379.1|IPF9611.2|Contig4-2855_0009|orf6.3756|CA2022|CaO19.12375|CaO19.4909	Putative S/T kinase of cell wall integrity pathway; required for hyphal growth; mutant cells show abnormal morphology and aggregation; Mob2p associated; required for wild-type transcriptional regulation of several cell-wall-associated genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2296995	2297176	+	ntar_214	2296995	2297176	1	2296995	2297176					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2299716	2300901	-	orf19.4909.1	2299716	2300901	2	2300901|2300348	2300707|2299716	2300710	2300032	RPL42	IPF22520.1|IPF9613.2|Contig4-2508_0008|CA2023|RPL42.3	ORF Predicted by Annotation Working Group; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2301150	2302260	-	orf19.4910	2301150	2302260	1	2302260	2301150	2302038	2301286	FGR41	orf19.12376|PGA35|IPF22465.1|IPF9616.1|Contig4-2508_0005|orf6.3757|CA2024|CaO19.12376|CaO19.4910|IPF9616	Putative GPI-anchored protein; transposon mutation affects filamentous growth; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2304036	2305399	+	orf19.4911	2304036	2305399	1	2304036	2305399	2304212	2305174		orf19.8596|orf19.12377|IPF17046.3|IPF9618.2|IPF26300.1|IPF29610.1|Contig4-2508_0004|orf6.580|orf6.3758|CA2025|orf19.981|CaO19.4911|CaO19.12377|IPF9618	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2305250	2307357	-	orf19.4912	2305250	2307357	1	2307357	2305250	2307229	2305295		orf19.8598|orf19.12378|IPF22445.1|IPF9619.2|IPF9924.2|IPF17048.2|Contig4-2508_0003|orf6.578|orf6.5815|orf6.3759|CA0121|orf19.983|CaO19.4912|CaO19.12378	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2307432	2308146	-	ntar_215	2307432	2308146	1	2308146	2307432					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2309139	2310647	+	orf19.984	2309139	2310647	1	2309139	2310647	2309139	2310647	PHO8	orf19.8599|orf6.5814|IPF26293.1|IPF9926.2|Contig4-2694_0008|CA3530|CaO19.8599|CaO19.984|IPF9926	Protein of unknown function; transcription is positively regulated by Rim101p; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg; possibly adherence-induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	2311158	2314090	+	orf19.985	2311158	2314090	1	2311158	2314090	2311282	2313795		orf19.8600|IPF9929.2|IPF18934.2|Contig4-2694_0006|orf6.1594|orf6.5813|CA3529|CaO19.985|IPF9929	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2315098	2316381	+	orf19.986	2315098	2316381	1	2315098	2316381	2315247	2316368	GLY1	orf19.8601|IPF9931.1|IPF6766.1|Contig4-2262_0004|Contig4-2694_0002|orf6.1595|orf6.5812|CA3528|GLY1-1|GLY1-2|GLY11|CaO19.986	L-threonine aldolase; possibly tetrameric; complements the glycine auxotrophy of an S. cerevisiae shm1 null shm2 null gly1-1 triple mutant; macrophage/pseudohyphal-induced; the GLY1 locus has an RFLP and is triploid in strain SGY269 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2316564	2318145	+	orf19.988	2316564	2318145	1	2316564	2318145	2316720	2317952		orf19.8603|IPF9934.1|IPF6770.1|Contig4-2262_0003|Contig4-2694_0001|orf6.1597|orf6.5810|CA3527|CaO19.988|IPF9934	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog); transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2318281	2319629	+	orf19.989	2318281	2319629	1	2318281	2319629	2318337	2319347		orf19.8604|IPF9936.2|IPF6773.2|IPF20059.1|Contig4-2262_0002|orf6.5809|orf6.1598|CA6251|CA3526|orf19.990.1|MRPS5|MRPS5.5f|MRPS5.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2319708	2321365	+	orf19.991	2319708	2321365	1	2319708	2321365	2319827	2321353	DJP1	orf19.8606|orf6.5807|IPF6776.2|IPF18933.2|Contig4-2932_0022|CA3525|CaO19.991|CaO19.8606	Similar to bacterial DnaJ; reported to have a role in peroxisome biogenesis; transcriptionally regulated by iron; expression greater in low iron; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2321596	2323579	+	orf19.992	2321596	2323579	1	2321596	2323579	2321637	2323508	LKH1	orf19.8607|IPF26288.1|IPF6778.2|Contig4-2932_0021|orf6.5806|LKH1.3|CA3524|CaO19.8607|CaO19.992|LKH1.3f	Protein repressed during the mating process; Hog1p-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2323934	2324874	+	orf19.993	2323934	2324874	1	2323934	2324874	2324072	2324596		orf19.8608|IPF26298.1|IPF20135.1|Contig4-2932_0019|orf6.5805|CA3523|DOP98|CaO19.993|CaO19.8608|IPF20135	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2325499	2326958	-	ntar_216	2325499	2326958	1	2326958	2325499	2326151	2325813			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2325641	2326189	+	orf19.994	2325641	2326189	1	2325641	2326189	2325641	2326189			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2327329	2329275	+	orf19.996	2327329	2329275	1	2327329	2329275	2327422	2329275		orf19.8611|IPF26290.1|IPF6784.2|Contig4-2932_0013|Contig4-2932_0014|orf6.5802|CA3521|LPF7|CaO19.8611|CaO19.996|IFA15	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr1	2329619	2329892	-	ntar_217	2329619	2329892	1	2329892	2329619					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2330036	2331004	+	orf19.997	2330036	2331004	1	2330036	2331004	2330255	2330854		orf19.8612|IPF18325.2|IPF6785.1|Contig4-2932_0011|orf6.5801|CA3520|SNL1|CaO19.997|CaO19.8612|IPF6785	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2330811	2332636	-	orf19.998	2330811	2332636	1	2332636	2330811	2332552	2330990		orf19.8613|IPF6787|IPF6787.1|IPF29608.1|Contig4-2932_0010|orf6.5800|CA3519|CaO19.8613|CaO19.998	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2332840	2335930	-	orf19.999	2332840	2335930	1	2335930	2332840	2335782	2332942	GCA2	IPF16527.3|IPF16526.2|Contig4-2932_0004|orf6.5798|orf6.5799|CA3518|GCA1|AMYG2.5f|AMYG2|IPF6791.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2333961	2334170	+	ntar_218	2333961	2334170	1	2333961	2334170	2333961	2334146			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2336984	2339580	-	orf19.1002	2336984	2339580	1	2339580	2336984	2339580	2337688		orf19.8618|IPF26289.1|IPF15371.2|orf6.5795|CA3517|CaO19.8618|LPF8|CaO19.1002|IFA22	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2339779	2340053	+	ntar_219	2339779	2340053	1	2339779	2340053					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2340578	2342386	-	orf19.1005	2340578	2342386	1	2342386	2340578	2342386	2340578		orf19.8619|IPF19532.1|IPF18326.1|IPF15368.2|Contig4-1962_0003|orf6.5794|orf6.581|CA6182|orf19.1003|CaO19.1005|LPF10	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2343905	2344838	-	orf19.1830	2343905	2344838	1	2344838	2343905	2344641	2344309		orf19.9389|IPF25491.1|IPF16475.1|Contig4-1874_0001|orf6.1220|CaO19.9389|CaO19.1830	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2345045	2345272	+	ntar_220	2345045	2345272	1	2345045	2345272					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2346663	2347357	+	ntar_221	2346663	2347357	1	2346663	2347357					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2348403	2348572	+	ntar_222	2348403	2348572	1	2348403	2348572					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2348672	2349094	-	orf19.1831	2348672	2349094	1	2349094	2348672	2349094	2348672		IPF29291.1|Contig4-2756_0003|orf6.1221|CaO19.1831	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2349879	2351851	+	orf19.1832	2349879	2351851	1	2349879	2351851	2349943	2351736	FCY23	orf19.9390|IPF10337.1|IPF29289.1|Contig4-2756_0005|orf6.4254|CA2374|CaO19.1832|TPN11|CaO19.9390	Putative transporter; Gcn4p-regulated; more similar to S. cerevisiae Tpn1p, which is a vitamin B6 transporter, than to purine-cytosine permeases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2351555	2352310	-	ntar_223	2351555	2352310	1	2352310	2351555					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2352474	2354143	+	orf19.1833	2352474	2354143	1	2352474	2354143	2352602	2354041		orf19.9391|IPF25486.1|IPF10336.1|Contig4-2756_0007|orf6.4253|CA2373|CaO19.9391|CBF5|CaO19.1833	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2354109	2356979	-	orf19.1834	2354109	2356979	1	2356979	2354109	2356937	2354205		orf19.9392|IPF25484.1|IPF10335.2|Contig4-2756_0008|Contig4-2756_0009|orf6.4252|CA2372|CaO19.1834|CaO19.9392|IPF10335	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2357206	2359419	-	orf19.1835	2357206	2359419	1	2359419	2357206	2359254	2357350		orf19.9393|IPF25485.1|IPF10333.2|Contig4-2756_0010|Contig4-2756_0011|orf6.4251|CA2371|CaO19.9393|CaO19.1835|IPF10333	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2361016	2362471	+	orf19.1836	2361016	2362471	1	2361016	2362471	2361077	2362432	APN2	orf19.9394|IPF25487.1|IPF10847.1|Contig4-2684_0005|Contig4-2756_0014|orf6.4250|CA2370|CaO19.1836|CaO19.9394	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2362001	2362433	-	ntar_224	2362001	2362433	1	2362433	2362001					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2362615	2364006	+	orf19.1837	2362615	2364006	1	2362615	2364006	2362662	2363378	TBP1	orf19.9395|IPF25489.1|IPF10845.1|Contig4-2684_0004|orf6.4249|CA2369|CaO19.1837|CaO19.9395	Transcription initiation factor; binds TATA box sequence, and binding does not require TFIIA; caspofungin repressed; functional homolog of S. cerevisiae and human TATA-binding proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2364134	2369345	-	orf19.1839	2364134	2369345	1	2369345	2364134	2369345	2364348	RPA190	orf19.9397|IPF25490.1|IPF10842.2|Contig4-2684_0001|Contig4-2684_0002|orf6.4247|CA2368|CaO19.9397|CaO19.1839	Predicted ORF in Assemblies 19, 20 and 21;flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2369621	2373569	-	orf19.1840	2369621	2373569	2	2373569|2373405	2373497|2369621	2373535	2369758		orf19.9889|orf19.9398|IPF25488.1|IPF10840.2|IPF24966.1|IPF13383.2|orf6.4246|orf6.4199|CA6195|CA2336|orf19.2353|CaO19.1840|CaO19.9398|IPF10840.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2373911	2375073	+	orf19.2352	2373911	2375073	1	2373911	2375073	2374045	2375019		orf19.9888|IPF24994.1|IPF13379.2|Contig4-2380_0004|orf6.4200|CA2337|CaO19.2352|CaO19.9888|IPF13379	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2374912	2376016	-	orf19.2351	2374912	2376016	1	2376016	2374912	2375969	2375064	NIT3	orf19.9887|IPF24993.1|IPF13378.1|Contig4-2380_0005|orf6.4201|CA2338|CaO19.9887|CaO19.2351	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2376145	2377803	-	orf19.2350	2376145	2377803	1	2377803	2376145	2377776	2376214		orf19.9886|IPF13377|IPF24976.1|IPF13377.2|Contig4-2380_0006|Contig4-2380_0007|orf6.4202|YOR378W|CA2339|CaO19.9886|CaO19.2350	Protein similar to S. cerevisiae Yor0378wp; transposon mutation affects filamentous growth; not essential for viability; member of MFS family of transporters; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2378638	2380759	-	orf19.2347	2378638	2380759	1	2380759	2378638	2380617	2378824	MNN2	orf19.9883|MNN5|IPF19382.2|IPF15847.2|orf6.233|orf6.4205|CA2340|CaO19.2347|MNN25	Alpha-1,2-mannosyltransferase; likely involved in iron utilization in the endocytosis pathway under iron-limiting conditions; similar to S. cerevisiae Mnn2p and Mnn5p; transposon mutation affects filamentous growth; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2381419	2383519	+	orf19.2346	2381419	2383519	1	2381419	2383519	2381550	2383424		orf19.9882|IPF24974.1|IPF13838.2|Contig4-3011_0001|orf6.4206|CA2341|CaO19.9882|FMP40|CaO19.2346|IPF13838	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2383485	2384873	-	orf19.2344	2383485	2384873	1	2384873	2383485	2384713	2383556	ASR1	orf19.9880|IPF13836|IPF24991.1|IPF13836.2|Contig4-3011_0003|orf6.4208|CA2342|CaO19.2344|DHN6	Protein described as similar to heat shock proteins; transcription regulated by cAMP, osmotic stress, ciclopirox olamine, ketoconazole; negatively regulated by Cyr1p, Ras1p; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2385594	2385936	-	ntar_225	2385594	2385936	1	2385936	2385594	2385719	2385594			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2386198	2386733	-	orf19.2343.1	2386198	2386733	2	2386733|2386588	2386663|2386198	2386670	2386378			Pseudogene; added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2386820	2388377	+	orf19.2343	2386820	2388377	1	2386820	2388377	2386859	2388307	VPS23	orf19.9879|IPF24985.1|IPF8671.2|Contig4-3011_0008|orf6.4209|CA2343|CaO19.2343|CaO19.9879|IPF8671	Protein involved in proteolytic activation of Rim101p, which regulates pH response; similar to S. cerevisiae Stp22p/Vps23p, which is a member of the ESCRT I protein sorting complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2388505	2389282	+	orf19.2342	2388505	2389282	1	2388505	2389282	2388535	2389188	SFT2	orf19.9878|IPF25003.1|IPF8674.2|Contig4-3011_0009|orf6.4210|CA2344|SFT22|SFT21|CaO19.2342|CaO19.9878	Transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2389103	2389951	-	orf19.2341	2389103	2389951	1	2389951	2389103	2389729	2389271	HNT1	orf19.9877|IPF25010.1|IPF8675.2|Contig4-3011_0010|orf6.4211|CA2345|CaO19.2341|CaO19.9877	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2390726	2393448	+	orf19.2340	2390726	2393448	1	2390726	2393448	2390766	2393246	CDC48	orf19.9876|IPF8680.2|IPF29137.1|Contig4-3011_0012|orf6.5568|CA3333|CaO19.2340|CaO19.9876	Protein described as microsomal ATPase; regulated by Gcn2p and Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2393436	2395279	-	orf19.2337	2393436	2395279	1	2395279	2393436	2395239	2393608	ALP1	orf19.9873|IPF24975.1|IPF8681.1|Contig4-3011_0014|orf6.5571|CA3334|LYP2|CaO19.9873|CaO19.2337	Putative high-affinity basic amino acid permease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2396292	2396900	+	orf19.2336	2396292	2396900	1	2396292	2396900	2396292	2396900		orf19.9872|IPF25004.1|IPF8682.1|Contig4-3011_0016|orf6.5572|CA3335|CaO19.9872|CaO19.2336|IPF8682	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2396788	2398444	-	orf19.2335	2396788	2398444	1	2398444	2396788	2398373	2396883		orf19.9871|IPF24979.1|IPF19983.1|Contig4-3011_0017|orf6.5573|CA3336|CaO19.2335|CaO19.9871|IPF19983	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorouracil (5-FU); Hog1p-induced; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2398572	2399695	+	orf19.2334	2398572	2399695	1	2398572	2399695	2398600	2399568	BIG1	orf19.9870|IPF24995.1|IPF13583.2|Contig4-3011_0019|orf6.5574|CA3337|CaO19.2334|CaO19.9870|IPF13583	Protein of the endoplasmic reticulum required for beta-1,6-glucan synthesis, filamentation, adhesion, and virulence; ortholog of S. cerevisiae Big1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2399593	2401504	-	orf19.2333	2399593	2401504	1	2401504	2399593	2401214	2399724		orf19.9869|IPF24983.1|IPF13582.2|Contig4-3011_0021|orf6.5575|CA3338|CaO19.9869|CaO19.2333|IPF13582	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2403598	2404392	+	orf19.2332	2403598	2404392	1	2403598	2404392	2403598	2404392		orf19.9868|IPF24999.1|IPF20131.1|Contig4-2080_0004|Contig4-3011_0030|orf6.5576|CA3339|CaO19.2332|CaO19.9868|IPF20131	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2404282	2406211	-	orf19.2331	2404282	2406211	1	2406211	2404282	2405785	2404448	ADA2	orf19.9867|IPF24987.1|IPF15288.1|Contig4-2080_0003|orf6.5577|CAS3|CA3340|CaO19.9867|CaO19.2331	Putative transcriptional coactivator; cell wall integrity role; required for wild-type transcriptional response to caspofungin; mutant is caspofungin hypersensitive; role in regulation with Cas5p; zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2406458	2407578	+	orf19.2329.1	2406458	2407578	2	2406458|2406974	2406594|2407578	2406592	2407384	RPS17B	IPF25018.1|IPF15290.2|Contig4-2080_0001|CA3341|RPS17|RPS17.3	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2407813	2409298	+	orf19.2330	2407813	2409298	1	2407813	2409298	2407857	2409152		orf19.9866|IPF24986.1|IPF13361.2|orf6.5578|YOR205C|CA3342|CaO19.9866|UTP6|CaO19.2330|IPF13361	Predicted ORF in Assemblies 19, 20 and 21; transposon mutation affects filamentous growth; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2408807	2410098	-	orf19.2328	2408807	2410098	1	2410098	2408807	2409985	2409149		orf19.9864|IPF24998.1|IPF13360.2|Contig4-2414_0001|orf6.5580|CA3343|CaO19.9864|CaO19.2328|IPF13360	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2410353	2410460	-	ti(uau)1	2410353	2410460	2	2410460|2410388	2410424|2410353				tI(UAU)1.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2410923	2412515	-	orf19.2326	2410923	2412515	1	2412515	2410923	2412442	2410985		orf19.9862|IPF24982.1|IPF13359.2|Contig4-2414_0003|Contig4-2414_0004|orf6.5582|CA3344|ESC2|CaO19.9862|CaO19.2326|IPF13359	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2412641	2414581	+	orf19.2325	2412641	2414581	1	2412641	2414581	2412665	2414218		orf19.9861|IPF24978.1|IPF13357.2|Contig4-2414_0006|orf6.5583|CA3345|TFC6|CaO19.2325|CaO19.9861|IPF13357	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2414071	2415610	-	orf19.2324	2414071	2415610	1	2415610	2414071	2415599	2414283	UBA4	orf19.9860|IPF24989.1|IPF13356.2|Contig4-2414_0007|orf6.5584|CA3346|CaO19.9860|CaO19.2324|IPF13356	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2415765	2416694	-	orf19.2322.3	2415765	2416694	2	2416694|2416345	2416408|2415765	2416629	2415911		IPF25016.1|IPF15563.2|Contig4-1946_0001|CA3347|ERP5	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2416828	2418349	-	orf19.2320	2416828	2418349	1	2418349	2416828	2418349	2416868		orf19.9856|IPF24981.1|IPF15559.2|Contig4-1946_0004|orf6.5588|CA3348|CaO19.2320|RIO1|CaO19.9856	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2418454	2419516	+	orf19.2318.1	2418454	2419516	2	2418454|2418649	2418578|2419516	2418540	2419305		IPF19588.1|IPF19589.2|Contig4-2539_0012|orf6.503|CA3349|IPF19588	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2419710	2422020	+	orf19.2319	2419710	2422020	1	2419710	2422020	2419750	2421768		orf19.9855|IPF18350.2|IPF16479.2|Contig4-2539_0011|orf6.504|orf6.5589|CA0098|CaO19.2319|IPF16479	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2422966	2423899	+	orf19.2317	2422966	2423899	1	2422966	2423899	2423366	2423899		orf19.9853|IPF25005.1|IPF13777.1|Contig4-2539_0007|orf6.5533|CA3299|CaO19.9853|CaO19.2317|IPF13777	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	2423903	2425835	-	orf19.2315	2423903	2425835	1	2425835	2423903	2425723	2424161		orf19.9851|IPF24980.1|IPF13780.2|Contig4-2539_0004|Contig4-2539_0005|orf6.5535|CA3300|RTG3|CaO19.2315|CaO19.9851	Putative transcription factor with bZIP DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2426191	2426927	-	orf19.2314	2426191	2426927	1	2426927	2426191	2426899	2426492		orf19.9850|IPF25009.1|IPF13782.2|Contig4-2539_0003|orf6.5536|CA3301|CaO19.9850|CaO19.2314|IPF13782	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2427040	2428494	-	orf19.2313	2427040	2428494	1	2428494	2427040	2428398	2427208		orf19.9849|IPF24990.1|IPF13784.2|Contig4-2539_0001|orf6.5537|CA3302|CaO19.9849|CaO19.2313|IPF13784	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2429153	2429351	+	ntar_226	2429153	2429351	1	2429153	2429351					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2429339	2432072	-	ntar_227	2429339	2432072	1	2432072	2429339	2431191	2431015			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2430115	2432154	+	orf19.2312	2430115	2432154	1	2430115	2432154	2430115	2432154		orf19.9848|IPF24972.1|IPF15397.2|FRE3|FRE11|FRE42|Contig4-2919_0013|orf6.5538|CA3303|CFL11|CaO19.9848|CaO19.2312	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; similar to ferric reductase Fre10p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2432412	2433574	+	orf19.2311	2432412	2433574	2	2432412|2432795	2432457|2433574	2432455	2433574	RPL82	orf19.9847|IPF25000.1|IPF11736.2|RPL8B-2|Contig4-2919_0011|orf6.5539|CA3304|RPL8A|CaO19.2311|CaO19.9847	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2433925	2434446	+	orf19.2310.1	2433925	2434446	2	2433925|2434126	2433925|2434446	2434130	2434321	RPL29	IPF24965.1|IPF11737.2|CA3305	Ribosomal protein L29; transcription is induced upon germ tube formation; shows colony morphology-related gene regulation by Ssn6p; intron in 5'-UTR [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2434657	2435748	+	orf19.2310	2434657	2435748	2	2434657|2434840	2434757|2435748	2434657	2435635		orf19.9846|IPF24997.1|IPF11738.2|Contig4-2919_0009|orf6.5540|CA3306|CaO19.9846|CaO19.2310|IPF11738	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2435450	2435587	-	ntar_228	2435450	2435587	1	2435587	2435450					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2435727	2437078	-	orf19.2309.2	2435727	2437078	2	2437078|2436635	2437040|2435727	2437043	2435875	RPL2	IPF11739.1|IPF19095.2|Contig4-2919_0008|CA3307|RPL2.3	ORF Predicted by Annotation Working Group; shows downregulation in infected rabbit kidney in SC5314, but not NGY152, strain background [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2438098	2440482	+	orf19.2309	2438098	2440482	1	2438098	2440482	2438200	2440317		orf19.9845|IPF11742.2|IPF19092.1|IPF19093.1|Contig4-2919_0005|orf6.5541|orf6.943|CA3308|PET127|PET127.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2441063	2441258	-	ntar_229	2441063	2441258	1	2441258	2441063	2441219	2441097			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2441949	2443231	+	orf19.2308	2441949	2443231	1	2441949	2443231	2442032	2443117		orf19.9844|IPF8806.2|IPF19091.2|Contig4-2919_0002|orf6.5542|CA3309|CaO19.2308|IPF8806	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2443222	2445105	-	orf19.2307	2443222	2445105	1	2445105	2443222	2445056	2443425		orf19.9843|IPF24977.1|IPF8808.2|Contig4-2919_0001|orf6.5543|CA3310|PFS2|CaO19.2307|CaO19.9843	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2445533	2446302	+	orf19.2306	2445533	2446302	1	2445533	2446302	2445609	2446145		orf19.9842|IPF25007.1|IPF8809.2|Contig4-2749_0015|orf6.5544|CA3311|CaO19.9842|CaO19.2306|IPF8809	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2445902	2446670	-	orf19.2305	2445902	2446670	1	2446670	2445902	2446615	2446241		orf19.9841|IPF25017.1|IPF8810.1|Contig4-2749_0014|orf6.5545|CA3312|GIM4|CaO19.2305|CaO19.9841|IPF8810	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2446876	2448032	-	orf19.2304	2446876	2448032	1	2448032	2446876	2447981	2446953		orf19.9840|IPF24992.1|IPF8811.2|Contig4-2749_0012|orf6.5546|YIL041W|CA3313|CaO19.2304|CaO19.9840|IPF8811	Protein similar to S. cerevisiae Yil041wp; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2448598	2449488	+	orf19.2303	2448598	2449488	1	2448598	2449488	2448714	2449415	FGR16	orf19.9839|IPF25001.1|IPF8812.2|Contig4-2749_0011|orf6.5547|CA3314|PRP38|CaO19.2303|CaO19.9839|IPF8812	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; fluconazole-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2449657	2451282	+	orf19.2302	2449657	2451282	1	2449657	2451282	2449721	2451190		orf19.9838|IPF24984.1|IPF8814.2|Contig4-2749_0008|Contig4-2749_0009|orf6.5548|CA3315|CSG2|CaO19.9838|CaO19.2302|IPF8814	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2450334	2450504	-	ntar_230	2450334	2450504	1	2450504	2450334					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2450778	2451197	-	ntar_231	2450778	2451197	1	2451197	2450778					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2451437	2452225	+	orf19.2301	2451437	2452225	1	2451437	2452225	2451516	2452211		orf19.9837|IPF25002.1|IPF8817.2|Contig4-2749_0007|orf6.5549|CA3316|CaO19.2301|CaO19.9837|IPF8817	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2452045	2452678	-	orf19.2299	2452045	2452678	1	2452678	2452045	2452546	2452241		orf19.9835|IPF25027.1|IPF8818.2|orf6.5551|CA3317|URM1|CaO19.2299|CaO19.9835	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2452991	2454426	+	orf19.2298	2452991	2454426	1	2452991	2454426	2453068	2454381		orf19.9834|IPF24988.1|IPF8820.1|Contig4-2749_0003|orf6.1375|orf6.5552|CA3318|WBP1|CaO19.9834|CaO19.2298	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2454042	2454652	-	ntar_232	2454042	2454652	1	2454652	2454042					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2454769	2456263	+	orf19.2297	2454769	2456263	1	2454769	2456263	2455016	2455786	ARL3	orf19.9833|IPF8822.3|IPF14275.1|Contig4-2749_0002|orf6.1374|orf6.5553|CA0447|CaO19.2297|IPF14275	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2457070	2465020	+	orf19.2296	2457070	2465020	1	2457070	2465020	2457135	2464790		orf19.8300|orf19.9831|IPF25023.1|IPF14282.3|IPF7715.3|IPF29744.1|Contig4-2776_0014|orf6.1793|orf6.3697|orf6.1373|CA0446|CA0706|orf19.682|CaO19.2296|IPF14282.5eoc|IPF14282|IPF14282.2	Predicted ORF in Assemblies 19, 20 and 21; similar to mucins; ketoconazole-induced; fluconazole-downregulated; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2464996	2467311	-	orf19.681	2464996	2467311	1	2467311	2464996	2467031	2465127	HAP43	orf19.8298|orf6.1795|IPF7711.2|IPF18253.2|Contig4-2776_0004|orf6.6574|CA0707|CaO19.681|IPF7711	CCAAT-binding factor (CBF)-dependent transcription factor required for iron-limitation response; similar to transcription factor AP-1; transcription is negatively regulated by Sfu1p; ciclopirox olamine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2468051	2469681	-	orf19.680	2468051	2469681	1	2469681	2468051	2469636	2468227		orf19.8297|IPF18893.2|IPF7706.2|Contig4-2776_0008|orf6.1796|orf6.6573|CA4115|TIM50|CaO19.680|IPF7706	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2469795	2470538	+	orf19.679	2469795	2470538	1	2469795	2470538	2469859	2470422	FGR39	orf19.8296|IPF26643.1|IPF7704.2|Contig4-2776_0010|orf6.6572|CA4114|CaO19.8296|CaO19.679|IPF7704	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2470418	2471449	-	orf19.677	2470418	2471449	1	2471449	2470418	2471379	2470558	CHO1	orf19.8294|IPF26635.1|IPF7703.2|Contig4-2776_0011|orf6.6570|CA4113|CaO19.8294|CaO19.677	Putative phosphatidylserine synthase; similar to S. cerevisiae Cho1p, which is involved in phosphatidylserine biosynthesis; transposon mutation affects filamentous growth; regulated by Nrg1p, Tup1p; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2472627	2473723	+	orf19.676	2472627	2473723	1	2472627	2473723	2472723	2473619		orf19.8293|IPF26634.1|IPF7699.2|Contig4-2917_0021|orf6.6569|CA4112|CaO19.676|BIM1|CaO19.8293	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2473688	2474168	-	orf19.675.1	2473688	2474168	1	2474168	2473688	2474092	2473955			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2474600	2474876	-	ntar_233	2474600	2474876	1	2474876	2474600					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2475428	2476355	+	orf19.675	2475428	2476355	1	2475428	2476355	2475597	2476235		orf19.8292|orf6.131|IPF7692.2|IPF3964.2|Contig4-2917_0017|orf6.6568|CA4111|CaO19.675|IPF3964	Similar to cell wall proteins; induced in core stress response, core caspofungin response; iron-regulated; amphotericin B induced; regulated by Cyr1p, Ssn6p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2476545	2478074	+	orf19.674	2476545	2478074	1	2476545	2478074	2476813	2477904		orf19.8291|IPF26630.1|IPF3965.2|Contig4-2917_0014|orf6.6567|CA4110|CWC2|CaO19.8291|CaO19.674|IPF3965	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2478125	2479234	+	orf19.673	2478125	2479234	1	2478125	2479234	2478125	2479234		orf19.8290|IPF26633.1|IPF3967.2|Contig4-2917_0012|orf6.6566|CA4109|CaO19.8290|OYE98|CaO19.673|IPF3967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2478851	2481004	-	orf19.672	2478851	2481004	1	2481004	2478851	2480984	2479239		orf19.8289|IPF26626.1|IPF3968.1|Contig4-2917_0010|Contig4-2917_0011|orf6.6565|CA4108|CaO19.8289|PRP28|CaO19.672|IPF3968	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2481131	2483836	-	orf19.671	2481131	2483836	1	2483836	2481131	2483510	2481501	PSP1	orf19.8288|IPF26617.1|IPF3970.2|Contig4-2917_0009|orf6.6564|CA4107|CaO19.671|IPF3970	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2484061	2484575	+	ntar_234	2484061	2484575	1	2484061	2484575	2484061	2484276			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2485023	2485756	-	orf19.670.2	2485023	2485756	2	2485756|2485474	2485557|2485023	2485587	2485275		IPF26615.1|IPF20159.1|CA4106|IPF20159	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2486263	2486782	+	ntar_235	2486263	2486782	1	2486263	2486782	2486263	2486448			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2486955	2487529	-	orf19.670	2486955	2487529	1	2487529	2486955	2487456	2487148	SMT3	orf19.8287|IPF26656.1|IPF20158.1|Contig4-2322_0001|Contig4-2917_0002|orf6.6563|CA4105|CaO19.8287|CaO19.670	SUMO, small ubiquitin-like protein; Smt3p-conjugated proteins localize to septation site and mother side of bud neck; C. albicans septins appear not to be Smt3p-modified, in contrast to S. cerevisiae septins; similar to S. cerevisiae Smt3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2487975	2489846	+	orf19.669	2487975	2489846	1	2487975	2489846	2487975	2489846	PRM1	orf19.8286|IPF26621.1|IPF20157.1|Contig4-2322_0003|Contig4-2322_0006|orf6.6562|CA4104|CaO19.8286|CaO19.669|IPF20157	Protein induced during the mating process [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2489799	2491516	-	orf19.668	2489799	2491516	1	2491516	2489799	2491386	2489908		orf19.8285|IPF26628.1|IPF3980.2|Contig4-2322_0007|orf6.6561|CA4103|CaO19.8285|CaO19.668|IPF3980	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2491983	2493102	+	orf19.667.1	2491983	2493102	2	2491983|2492497	2492144|2493102	2492138	2492762	RPL37B	IPF26651.1|IPF20156.1|Contig4-2094_0006|CA4102	Predicted ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2492937	2495282	-	orf19.666	2492937	2495282	1	2495282	2492937	2495200	2493020		orf19.8283|orf19.8284|IPF26629.1|IPF26636.1|IPF3984.2|IPF3985.2|Contig4-2094_0003|Contig4-2094_0005|Contig4-2322_0011|orf6.6559|orf6.6560|CA4100|CA4101|orf19.667|IPF3985	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2495660	2496856	+	orf19.665	2495660	2496856	1	2495660	2496856	2495756	2496559	NEP1	orf19.8282|IPF26637.1|IPF3986.2|Contig4-2094_0002|orf6.6558|CA4099|CaO19.665|CaO19.8282|IPF3986	Protein of unknown function; ortholog of S. cerevisiae Emg1p, which is involved in ribosome biogenesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2497091	2497825	+	orf19.664	2497091	2497825	1	2497091	2497825	2497091	2497825		orf19.8281|IPF26638.1|IPF3988.2|orf6.6557|CA4098|CaO19.664|CaO19.8281|IPF3988	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2497745	2502256	-	orf19.663	2497745	2502256	1	2502256	2497745	2501997	2497948	GIN4	orf19.8280|IPF26652.1|IPF3994.2|Contig4-2788_0002|orf6.6556|CA4097|CaO19.8280|CaO19.663	Kinase involved in pseudohyphal-to-hyphal switch; phosphorylates Cdc11p on S395 (regulatory); autophosphorylates; necessary for septin ring within germ tube, but not for septin band at mother cell junction; role in cytokinesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2503392	2504080	-	orf19.8278	2503392	2504080	1	2504080	2503392	2503966	2503625			Predicted ORF from original SGTC Assembly 19 annotation, removed from the reduced ORF set by the SGTC; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2504139	2505389	+	orf19.661	2504139	2505389	1	2504139	2505389	2504197	2505273	KRR1	orf19.8277|IPF3997.3|IPF4000.2|Contig4-2788_0008|orf6.254|orf6.6554|CA4096|CaO19.661	Decreased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2504855	2505089	-	ntar_236	2504855	2505089	1	2505089	2504855					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2506043	2508324	+	orf19.660	2506043	2508324	1	2506043	2508324	2506221	2508167		orf19.8276|IPF26622.1|IPF4002.2|Contig4-2788_0013|orf6.6553|CA4095|CaO19.660|CaO19.8276|IPF4002	Putative protein of unknown function; mRNA binds to She3p; predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2508147	2512007	-	orf19.658	2508147	2512007	1	2512007	2508147	2511975	2508271	GIN1	orf19.8274|IPF4004|IPF16455.3|IPF4004.2|Contig4-2788_0014|orf6.2188|orf6.6551|CA4094|MRC1|CaO19.658	Protein involved in regulation of DNA-damage-induced filamentous growth; putative component of DNA replication checkpoint; ortholog of S. cerevisiae Mrc1p, an S-phase checkpoint protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2512457	2513100	+	ntar_237	2512457	2513100	1	2512457	2513100	2512457	2512669			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2513493	2514836	-	orf19.657	2513493	2514836	1	2514836	2513493	2514777	2513620	SAM2	orf19.8272|IPF26631.1|IPF15535.2|Contig4-2279_0002|orf6.2190|CA0959|CaO19.657|CaO19.8272	S-adenosylmethionine synthetase, localizes to surface of hyphal cells, but not yeast-form cells; possible biofilm-induced expression (reports differ); alkaline upregulated; Hog1p-induced; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2515542	2515876	+	ntar_238	2515542	2515876	1	2515542	2515876					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2515681	2516424	-	ntar_239	2515681	2516424	1	2516424	2515681					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2516626	2517051	-	ntar_240	2516626	2517051	1	2517051	2516626	2516799	2516650			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2516642	2517066	+	ntar_241	2516642	2517066	1	2516642	2517066					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2517333	2518437	-	orf19.656	2517333	2518437	1	2518437	2517333	2518372	2517560	DPP1	orf19.8271|IPF5432.1|IPF29743.1|Contig4-2315_0005|orf6.2191|CA0960|CaO19.656|CaO19.8271	Putative diacylglycerol pyrophosphate phosphatase of diacylglycerol production for phospholipid biosynthesis; downregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2522169	2524775	+	orf19.655	2522169	2524775	1	2522169	2524775	2522395	2524032	PHO84	orf19.8269|orf19.8765|IPF26171.1|IPF7638.2|IPF26640.1|IPF5438.2|orf6.447|orf6.3437|CA1782|CA0083|orf19.1172|PHO84.5eoc	Protein similar to high-affinity phosphate transporters; expression is regulated upon white-opaque switching or biofilm formation; Hog1p, ciclopirox olamine or alkaline induced; caspofungin or stress repressed; upregulated in RHE model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2524768	2527061	-	orf19.1171	2524768	2527061	1	2527061	2524768	2527061	2524803		orf19.8764|IPF26156.1|IPF7635.2|Contig4-2602_0002|orf6.3438|CA1783|CaO19.8764|CaO19.1171|IPF7635	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2528029	2529405	-	orf19.1170	2528029	2529405	1	2529405	2528029	2529344	2528538	ARO7	orf19.8763|IPF26168.1|IPF7632.1|Contig4-2602_0006|orf6.3439|CA1784|CaO19.1170|CaO19.8763	Putative chorismate mutase; fungal-specific (no human or murine homolog); alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2528418	2528551	+	ntar_242	2528418	2528551	1	2528418	2528551					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2528820	2529507	+	ntar_243	2528820	2529507	1	2528820	2529507	2529301	2529507			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2529543	2530650	-	orf19.1169	2529543	2530650	1	2530650	2529543	2530577	2529627		orf19.8762|IPF26167.1|IPF7631.2|Contig4-2602_0008|orf6.3440|CA1785|JID1|CaO19.1169|CaO19.8762|IPF7631	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2531124	2531986	-	orf19.1168	2531124	2531986	1	2531986	2531124	2531948	2531361		ZCF3|orf19.8761|IPF7629.2|Contig4-2602_0009|orf6.3441|CA1786|CaO19.1168|CaO19.8761|IPF7629	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2532458	2533618	-	orf19.1167	2532458	2533618	1	2533618	2532458	2533618	2532458		orf19.8760|IPF26164.1|IPF19929.1|Contig4-2394_0007|Contig4-2602_0012|orf6.3442|CA1787|TCD1|CaO19.8760|CaO19.1167|IFH3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	2534005	2538303	-	orf19.1166	2534005	2538303	2	2538303|2538083	2538186|2534005	2538201	2534209	CTA3	orf19.8759|IPF26181.1|IPF7623.2|Contig4-2394_0005|Contig4-2394_0006|orf6.3443|CA1788|EDE1|USO1.3	Protein similar to S. cerevisiae Ede1p, which is involved in endocytosis; activates transcription in 1-hybrid assay in S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2538569	2539292	+	orf19.1164	2538569	2539292	1	2538569	2539292	2538599	2539159	GAR1	orf19.8757|IPF13076.1|IPF7621.1|Contig4-2109_0005|Contig4-2394_0002|orf6.1613|orf6.3445|CA1789|CaO19.1164	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to tubercidin (7-deazaadenosine); macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2539097	2540514	-	orf19.1163	2539097	2540514	1	2540514	2539097	2540436	2539345		orf19.8756|IPF13079.1|IPF7620.2|Contig4-2109_0003|orf6.1612|orf6.3446|CA0590|CaO19.8756|CaO19.1163|IPF13079	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2540598	2541226	+	orf19.1162.1	2540598	2541226	2	2540598|2540709	2540628|2541226	2540598	2541211		IPF26174.1|IPF13080.1|Contig4-2109_0002|CA0589|IPF13080	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=F]
Ca21chr1	2541360	2541910	+	orf19.1162	2541360	2541910	1	2541360	2541910	2541437	2541814		orf19.8755|IPF18931.2|IPF13081.2|Contig4-2109_0001|orf6.1611|CA0588|CaO19.8755|DOP99|CaO19.1162|IPF13081	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2542103	2547491	+	orf19.1161	2542103	2547491	1	2542103	2547491	2542332	2547464	PLD1	orf19.8753|IPF13085.3|IPF29560.1|orf6.1610|orf6.3136|CA0587|SPO14|CaO19.1161|CA1571|SPO14.3eoc|IPF7619.1|SPO14.5eoc|IPF13085.2	Phospholipase D1; required for phosphatidic acid and for most diacylglycerol production; required for wild-type mouse virulence, but not rat oral virulence; mutant defect in hyphal growth on solid substrates; similar to S. cerevisiae Spo14p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2547693	2548421	+	orf19.1160	2547693	2548421	1	2547693	2548421	2547774	2548421		orf19.8752|IPF26172.1|IPF7617.2|Contig4-2834_0013|orf6.3135|CA1570|CaO19.1160|CaO19.8752|IPF7617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2548377	2550074	-	orf19.1159	2548377	2550074	1	2550074	2548377	2549999	2548479		orf19.8751|IPF26162.1|IPF7616.2|Contig4-2834_0012|orf6.3134|CA1569|CYS1|CaO19.8751|CaO19.1159|IPF7616	Predicted ORF in Assemblies 19, 20 and 21; similar to A. nidulans CYSA serine O-trans-acetylase, suggesting that C. albicans uses an O-acetyl-serine (OAS) pathway of sulfur assimilation; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2550177	2551152	+	orf19.1158	2550177	2551152	1	2550177	2551152	2550177	2551070		orf19.8750|IPF26169.1|IPF7615.1|Contig4-2834_0010|orf6.3133|CA1568|CaO19.1158|CaO19.8750|IPF7615	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2551129	2552283	-	orf19.1156	2551129	2552283	1	2552283	2551129	2552283	2551129	FUS1	orf19.8748|orf6.3131|IPF26166.1|IPF7613.1|Contig4-2834_0008|CA1567|CaO19.1156|CaO19.8748|IPF7613	Probable ortholog of S. cerevisiae Fus1p, which is a membrane protein required for mating; transcription is activated by Cph1p in mating type a cells, homozygous for the MTLa locus; alpha factor induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2552345	2553720	-	orf19.1155	2552345	2553720	1	2553720	2552345	2553583	2552729	DPP2	orf19.8747|IPF26170.1|IPF7611.1|Contig4-2834_0007|orf6.3130|CA1566|CaO19.8747|DPP1|CaO19.1155	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae pyrophosphate phosphatase Lpp1p; possible role in farnesol biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2554248	2555163	+	orf19.1154	2554248	2555163	1	2554248	2555163	2554317	2554790	EGD1	orf19.8746|IPF26175.1|IPF7610.1|Contig4-2834_0004|orf6.3129|CA1565|CaO19.8746|CaO19.1154	Predicted ORF in Assemblies 19, 20 and 21; soluble protein in hyphae; biofilm induced; macrophage/pseudohyphal-induced; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2555756	2557685	+	orf19.1153	2555756	2557685	1	2555756	2557685	2555881	2557587	GAD1	orf19.8745|IPF11712.3|IPF7609.1|Contig4-2834_0001|orf6.2779|orf6.3128|CA1564|CaO19.1153	Protein described as glutamate decarboxylase; macrophage-downregulated gene; alkaline downregulated; amphotericin B induced; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2558242	2559413	+	orf19.1152	2558242	2559413	1	2558242	2559413	2558395	2559192		orf19.8744|IPF11713.1|IPF29561.1|IPF19733.2|Contig4-2773_0002|orf6.2780|orf6.3127|CA1330|CA6184|orf19.1151|CaO19.1152|IPF11713.5f	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; induced in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2558369	2559521	-	orf19.1150.1	2558369	2559521	1	2559521	2558369	2559483	2559262		IPF26154.1|IPF11714.1|CA1331|IPF11714	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2560894	2562678	+	orf19.1150	2560894	2562678	1	2560894	2562678	2561059	2562477		orf19.8743|IPF26163.1|IPF11716.1|Contig4-2773_0006|orf6.2781|CA1332|CaO19.8743|CaO19.1150|IPF11716	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2562589	2564032	-	orf19.1149	2562589	2564032	1	2564032	2562589	2563794	2562715	MRF1	orf19.8742|IPF11717.2|IPF14722.3|Contig4-2773_0007|orf6.100|orf6.2782|CA1333|ETR2|CaO19.1149	Protein similar to mitochondrial respiratory proteins; increased transcription observed upon benomyl treatment; induced by farnesol, nitric oxide, core stress response; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2564273	2564614	+	ntar_244	2564273	2564614	1	2564273	2564614					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2564787	2565578	-	orf19.1148	2564787	2565578	1	2565578	2564787	2565578	2564787		orf19.8740|IPF19912.1|IPF29559.1|Contig4-2773_0009|orf6.2784|CA1334|CaO19.1148|CIS312|IPF19912	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2567851	2568611	+	orf19.1146	2567851	2568611	1	2567851	2568611	2568243	2568611		IPF29564.1|CaO19.1146	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2568844	2572474	+	orf19.1144	2568844	2572474	1	2568844	2572474	2568844	2572209		orf19.8737|IPF26180.1|IPF13166.3|Contig4-2773_0012|orf6.2172|orf6.2787|CA0953|CaO19.1144|IPF13166|IPF13166.3eoc|IPF13166.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2572602	2573989	+	orf19.1143	2572602	2573989	1	2572602	2573989	2572640	2573824		orf19.8736|IPF26165.1|IPF20069.1|orf6.2173|CA6246|CaO19.8736|CaO19.1143|IPF20069	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2574573	2576930	+	orf19.1142	2574573	2576930	1	2574573	2576930	2574824	2576743		orf19.8735|IPF26160.1|IPF13162.2|Contig4-2171_0004|Contig4-2171_0005|orf6.2174|CA0954|AVT41|CaO19.1142|CaO19.8735|IPF13162	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2576808	2577712	-	orf19.1140	2576808	2577712	1	2577712	2576808	2577590	2576964		orf19.8733|IPF17749.2|IPF13160.2|Contig4-2171_0003|orf6.2176|CA0955|CaO19.1140|IPF13160	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2577946	2581182	-	orf19.1139	2577946	2581182	1	2581182	2577946	2581086	2578162		orf19.8732|IPF17015.2|IPF29554.1|Contig4-2171_0008|orf6.1575|orf6.2177|CA0570|SVL3|CaO19.1139	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2583723	2585113	+	orf19.1137	2583723	2585113	1	2583723	2585113	2584210	2584884		orf19.8730|IPF16571.2|IPF4687.1|Contig4-2562_0007|orf6.1573|orf6.783|CA0569|CDC8|CaO19.1137	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2584766	2585472	-	orf19.1136	2584766	2585472	1	2585472	2584766	2585384	2584947		orf19.8729|IPF16570.2|IPF4688.1|Contig4-2562_0006|orf6.1572|orf6.782|CA0568|APS2|CaO19.1136	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2585539	2588187	+	orf19.1135	2585539	2588187	1	2585539	2588187	2585659	2588094	CAS1	orf19.8728|IPF19699.2|IPF20050.1|IPF20065.1|Contig4-2562_0005|orf6.1571|orf6.1909|orf6.781|CA0779|orf19.3491|YKU701|CaO19.1135	Putative transcription factor with beta-barrel DNA-binding motif; mutation causes marginal increase in caspofungin sensitivity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2588713	2588821	+	ty(gua)1	2588713	2588821	2	2588713|2588786	2588749|2588821				tY(GUA)1.2	tRNA-Tyr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2589199	2589292	+	ty(gua)4	2589199	2589292	2	2589199|2589257	2589235|2589292					tRNA-Tyr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2592232	2594878	+	orf19.5282	2592232	2594878	2	2592232|2593343	2592391|2594878	2593345	2594787		orf19.12747|IPF4696|IPF21944.1|IPF4696.2|Contig4-3082_0045|orf6.7660|CA4970|CaO19.12747|CaO19.5282	Putative protein of unknown function; mRNA binds to She3p; decreased expression in hyphae compared to yeast-form cells; regulated by Efg1p and Efh1p; intron in 5'-UTR; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2595123	2599128	+	orf19.5281	2595123	2599128	1	2595123	2599128	2595379	2599041		orf19.12746|IPF21985.1|IPF4697.2|Contig4-3082_0043|orf6.7661|CA4971|CaO19.5281|SCP160|CaO19.12746|IPF4697	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2600193	2602071	+	orf19.5280	2600193	2602071	1	2600193	2602071	2600273	2601934	MUP1	orf19.12745|IPF21939.1|IPF4701.2|Contig4-3082_0038|orf6.7662|CA4972|CaO19.5280|CaO19.12745	Alkaline upregulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2602212	2602937	+	orf19.5279	2602212	2602937	1	2602212	2602937	2602277	2602699		orf19.12744|IPF21976.1|IPF4703.2|Contig4-3082_0036|orf6.7663|CA4973|CaO19.5279|MRPL51|CaO19.12744|IPF4703	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2603064	2604362	+	orf19.5278	2603064	2604362	1	2603064	2604362	2603198	2604226		orf19.12743|IPF21955.1|IPF4704.1|Contig4-3082_0035|orf6.7664|CA4974|CaO19.5278|CMD2|CaO19.12743|IPF4704	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2604326	2605649	-	orf19.5277	2604326	2605649	1	2605649	2604326	2605624	2604401		orf19.12742|IPF21953.1|IPF4706.1|Contig4-3082_0034|orf6.7665|CA4975|CaO19.12742|CaO19.5277|IPF4706	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2605840	2607204	+	orf19.5276	2605840	2607204	1	2605840	2607204	2605879	2607126		orf19.12741|IPF21952.1|IPF4708.1|Contig4-3082_0031|orf6.7666|CA4976|CaO19.5276|THP1|CaO19.12741|IPF4708	Predicted ORF in Assemblies 19, 20 and 21; induced upon low-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2607376	2608829	+	orf19.5275	2607376	2608829	1	2607376	2608829	2607454	2608677		orf19.12740|IPF21950.1|IPF4710.1|Contig4-3082_0030|orf6.7667|CA4977|CaO19.5275|CaO19.12740|IPF4710	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2608786	2609209	-	ntar_245	2608786	2609209	1	2609209	2608786					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2610641	2613990	+	orf19.5274	2610641	2613990	1	2610641	2613990	2610835	2613900		orf19.12739|IPF21996.1|IPF2065.2|Contig4-3082_0028|orf6.7668|CA4978|CaO19.12739|CAF120|CaO19.5274|IPF2065	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2614012	2615942	-	orf19.5271	2614012	2615942	1	2615942	2614012	2615882	2614137		orf19.12736|IPF21938.1|IPF2062.1|Contig4-3082_0026|orf6.7671|CA4979|CaO19.12736|CaO19.5271|IPF2062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2616938	2618200	+	orf19.5270	2616938	2618200	1	2616938	2618200	2617074	2618096		orf19.12735|IPF21957.1|IPF2059.1|Contig4-3082_0023|orf6.7672|CA4980|CaO19.12735|CMD3|CaO19.5270|IPF2059	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2618103	2618790	-	orf19.5269.1	2618103	2618790	1	2618790	2618103	2618557	2618303			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2619114	2620782	-	orf19.5269	2619114	2620782	1	2620782	2619114	2620566	2619175		orf19.12734|IPF21945.1|IPF2057.1|Contig4-3082_0018|orf6.7673|CA4981|CaO19.12734|CaO19.5269|IPF2057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2620859	2622002	+	orf19.5268	2620859	2622002	1	2620859	2622002	2621014	2621526		orf19.12733|IPF21969.1|IPF2054.1|Contig4-3082_0015|orf6.7674|CA4982|CaO19.5268|NUT2|CaO19.12733	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2620917	2621690	-	ntar_246	2620917	2621690	1	2621690	2620917					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2623953	2624906	+	orf19.5267	2623953	2624906	1	2623953	2624906	2624074	2624559		orf19.12732|IPF21970.1|IPF2053.1|Contig4-3082_0012|orf6.7675|CA4983|CaO19.12732|CaO19.5267|IPF2053	Putative cell wall protein; downregulated in core caspofungin response; transcription is repressed in response to alpha pheromone in SpiderM medium; transcription repressed in ace2 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2624769	2626184	-	orf19.5266	2624769	2626184	1	2626184	2624769	2626184	2624805		orf19.12731|IPF21948.1|IPF2052.1|Contig4-3082_0011|orf6.7676|CA4984|CaO19.5266|CaO19.12731|IPF2052	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	2626424	2629582	-	orf19.5265	2626424	2629582	1	2629582	2626424	2629381	2626667	KIP4	orf19.12730|KINH|IPF21924.1|IPF2050.1|Contig4-3082_0007|Contig4-3082_0008|orf6.7677|CA4985|CaO19.5265|SMY1|CaO19.12730|IPF2050	Transposon mutation affects filamentous growth; filament induced; shows Mob2p-dependent hyphal regulation; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2631799	2631997	-	ntar_247	2631799	2631997	1	2631997	2631799					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2632107	2632532	+	orf19.5264	2632107	2632532	1	2632107	2632532	2632107	2632532		orf19.12729|IPF21979.1|IPF28105.1|orf6.7678|CaO19.12729|CaO19.5264	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2632940	2634504	+	orf19.5263	2632940	2634504	1	2632940	2634504	2633019	2634410	SER33	orf19.12728|IPF21949.1|IPF2046.1|Contig4-2701_0010|Contig4-2701_0011|orf6.7679|CA4986|SER3|CaO19.5263|CaO19.12728	Predicted enzyme of amino acid biosynthesis; Gcn4p-regulated; upregulated in biofilm; protein detected by mass spec in exponential and stationary phase cultures; S. cerevisiae ortholog is Gcn4p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2634590	2635021	+	orf19.5262	2634590	2635021	1	2634590	2635021	2634590	2635021		orf19.12727|IPF21975.1|IPF2045.1|Contig4-2701_0009|orf6.7680|CA4987|CaO19.5262|CaO19.12727|IPF2045	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2635329	2638386	+	orf19.5260	2635329	2638386	1	2635329	2638386	2635462	2638320	RPN2	orf19.12725|orf19.12726|IPF21923.1|IPF2043.1|Contig4-2701_0006|Contig4-2701_0007|orf6.7682|orf6.7681|CA4988|orf19.5261|CaO19.12725|CaO19.5260	Transcription is regulated by Mig1p; caspofungin repressed; regulated by Gcn2p and Gcn4p; gene used for strain identification by multilocus sequence typing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2638387	2639220	-	orf19.5259	2638387	2639220	1	2639220	2638387	2639142	2638423		orf19.12724|IPF21962.1|IPF2041.2|Contig4-2701_0005|orf6.7683|CA4989|CaO19.12724|CaO19.5259|IPF2041	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2639259	2641209	-	orf19.5258	2639259	2641209	1	2641209	2639259	2641174	2639294		orf19.12723|IPF21937.1|IPF2039.1|Contig4-2701_0004|orf6.7684|CA4990|CaO19.12723|CaO19.5258|IPF2039	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2641926	2643683	+	orf19.5257	2641926	2643683	1	2641926	2643683	2641966	2643558	LCB4	orf19.12722|IPF21943.1|IPF2037.1|Contig4-2701_0001|orf6.7685|CA4991|CaO19.12722|CaO19.5257	Putative sphingosine kinase; expression is Tac1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2643690	2645045	-	orf19.5256	2643690	2645045	1	2645045	2643690	2645045	2643690		orf19.12721|IPF21947.1|IPF2036.1|orf6.7686|CA4992|CaO19.5256|CaO19.12721|IPF2036	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2645293	2647565	-	orf19.5255	2645293	2647565	1	2647565	2645293	2647477	2645474	PXA2	orf19.12720|IPF21930.1|IPF2034.2|Contig4-3107_0029|orf6.7687|CA4993|CaO19.12720|CaO19.5255	Putative peroxisomal, half-size adrenoleukodystrophy protein (ALD or ALDp) subfamily ABC transporter; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2647676	2648338	-	orf19.5254	2647676	2648338	1	2648338	2647676	2648269	2647889		orf19.12719|IPF21981.1|IPF2033.1|Contig4-3067_0001|orf6.7688|CA4994|CaO19.5254|CaO19.12719|IPF2033	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2648515	2650991	+	orf19.5253	2648515	2650991	1	2648515	2650991	2648700	2650898		orf19.12718|IPF21932.1|IPF2032.1|Contig4-3067_0003|orf6.7689|CA4995|CaO19.5253|CaO19.12718|IPF2032|YAK1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2650767	2653408	-	orf19.5251	2650767	2653408	1	2653408	2650767	2653379	2650980		ZCF30|orf19.12716|IPF2029|IPF21928.1|IPF2029.1|Contig4-3067_0004|Contig4-3067_0005|orf6.7691|CA4996|CaO19.5251|CaO19.12716	Predicted zinc-finger protein of unknown function; not essential for viability; decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2653663	2654340	+	orf19.5250	2653663	2654340	1	2653663	2654340	2653711	2654199		orf19.12715|IPF21972.1|IPF2027.1|Contig4-3067_0008|orf6.7692|CA4997|CaO19.5250|CaO19.12715|IPF2027	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2654160	2655072	-	orf19.5249	2654160	2655072	2	2655072|2654828	2654898|2654160	2654955	2654278		orf19.12714|IPF21966.1|IPF2026.1|Contig4-3067_0009|orf6.7693|CA4998|CaO19.12714|CaO19.5249|IPF2026	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2655428	2656385	+	orf19.5248	2655428	2656385	1	2655428	2656385	2655623	2656132	MSO1	orf19.12713|IPF21968.1|IPF2024.1|Contig4-3067_0011|orf6.7694|CA4999|CaO19.5248|CaO19.12713|IPF2024	Predicted ORF in Assemblies 19, 20 and 21; expression is down-regulated during pseudohyphal growth in the presence of lysed macrophages [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2656132	2657545	-	orf19.5247	2656132	2657545	1	2657545	2656132	2657486	2656206		orf19.12712|IPF21951.1|IPF2023.2|Contig4-3067_0012|Contig4-3067_0013|orf6.7695|CA5000|CaO19.5247|CaO19.12712|IPF2023	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2657639	2658949	-	orf19.5246	2657639	2658949	1	2658949	2657639	2658916	2657750		orf19.12711|IPF21954.1|IPF2022.1|Contig4-3067_0014|orf6.7696|CA5001|CaO19.5246|CaO19.12711|IPF2022	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2659343	2661558	+	orf19.5245	2659343	2661558	1	2659343	2661558	2659343	2661511		orf19.12710|IPF21933.1|IPF2021.1|Contig4-3067_0016|Contig4-3067_0017|orf6.7697|CA5002|CaO19.12710|BUL4|CaO19.5245|IPF2021	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2661727	2664794	+	orf19.5244	2661727	2664794	1	2661727	2664794	2661825	2664740	MCD4	orf19.12709|IPF21997.1|IPF2019.2|Contig4-3067_0018|orf6.7698|CA5003|CaO19.5244|CaO19.12709	Protein of major facilitator superfamily; has phosphodiesterase/nucleotide pyrophosphatase domain; similar to S. cerevisiae Mcd4p, which acts in GPI anchor biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2664927	2666594	+	orf19.5243	2664927	2666594	1	2664927	2666594	2664966	2666528	TRP3	orf19.12708|IPF21941.1|IPF2018.2|Contig4-3067_0019|orf6.7699|CA5004|CaO19.12708|CaO19.5243	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2666984	2668695	+	orf19.5242	2666984	2668695	1	2666984	2668695	2667057	2668502	CDC6	orf19.12707|IPF2017.3|IPF28100.1|Contig4-3067_0020|orf6.769|orf6.7700|CA6297|CDC62.3f|CA0178|IPF2017.2	Predicted ORF in Assemblies 19, 20 and 21; member of conserved Mcm1p regulon; periodic mRNA expression, peak at cell-cycle M/G1 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2668545	2668899	-	ntar_248	2668545	2668899	1	2668899	2668545					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2669334	2672788	+	orf19.5241	2669334	2672788	1	2669334	2672788	2669672	2672677	SNT1	orf19.12706|IPF12584|IPF2015.3|IPF12584.2|Contig4-3067_0022|orf6.768|orf6.7701|CA5006|CaO19.5241	Protein similar to S. cerevisiae Snt1p, which is an NAD-independent histone deacetylase; not essential for viability; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2672782	2674324	-	orf19.5239	2672782	2674324	1	2674324	2672782	2674291	2672876		orf19.12703|IPF21946.1|IPF12579.2|Contig4-3067_0023|orf6.7703|CA5007|CaO19.5239|CaO19.12703|IPF12579	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2674426	2676564	-	orf19.5238	2674426	2676564	1	2676564	2674426	2676383	2674566		orf19.12702|IPF21935.1|IPF12577.2|Contig4-3067_0025|orf6.7704|CA5008|CaO19.5238|CaO19.12702|IPF12577	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2677459	2678228	+	orf19.5237	2677459	2678228	1	2677459	2678228	2677581	2678222		orf19.12701|IPF21964.1|IPF13946.2|Contig4-3067_0029|orf6.7705|CA5009|VPH2|CaO19.12701|CaO19.5237	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2678359	2679446	+	orf19.5236	2678359	2679446	2	2678359|2678682	2678616|2679446	2678377	2679386		orf19.12700|IPF21963.1|IPF13944.2|IPF21921.1|IPF13945.2|Contig4-3067_0030|Contig4-3067_0031|orf6.7706|CA5011|CA5010|orf19.5236.1|CaO19.5236|SRT1|CaO19.12700|IPF13944	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.5236.1 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2679228	2680284	-	orf19.5235	2679228	2680284	1	2680284	2679228	2680237	2679539		orf19.12699|IPF13943|IPF21961.1|IPF13943.2|Contig4-3067_0032|orf6.7707|CA5012|CaO19.12699|CaO19.5235	Protein not essential for viability; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2680428	2682928	-	orf19.5234	2680428	2682928	1	2682928	2680428	2682643	2680634	RBD1	orf19.12698|IPF11263.3|IPF13941.2|Contig4-3067_0034|orf6.2435|orf6.7708|CA5013|CaO19.5234|IPF13941	Rhomboid-like protein; similar to putative intramembrane serine proteases; involved in filamentous growth; Gcn4p-regulated; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2683788	2684135	+	orf19.5233	2683788	2684135	1	2683788	2684135	2683788	2684135		IPF21990.1|IPF28106.1|orf6.7709|CaO19.5233	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2685604	2686751	-	orf19.5232	2685604	2686751	1	2686751	2685604	2686695	2685817	CSI2	orf19.12697|IPF11270.2|IPF28101.1|Contig4-2357_0002|orf6.2436|orf6.7710|CA1106|CaO19.5232|BRX1|IPF11270	Protein essential for growth; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2687159	2687688	-	orf19.5231.2	2687159	2687688	1	2687688	2687159	2687617	2687414		IPF11271.2|IPF28096.1|CA1107|IPF11271	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2687973	2689208	+	orf19.5231	2687973	2689208	1	2687973	2689208	2687973	2689208		orf19.12696|IPF11273.2|IPF18148.2|Contig4-2357_0007|orf6.2437|orf6.7711|CA1108|CaO19.5231|IPF11273	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2689281	2690459	-	orf19.5230	2689281	2690459	1	2690459	2689281	2690384	2689374	MRPS9	orf19.12695|IPF21956.1|IPF11274.2|Contig4-2357_0008|orf6.2438|CA1109|CaO19.12695|CaO19.5230	Mitochondrial ribosomal protein S9; has N-terminal mitochondrial targeting signal and an S9 consensus motif; overexpression in S. cerevisiae causes respiratory defect that is reversible upon cessation of C. albicans gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2690852	2693991	+	orf19.5229	2690852	2693991	1	2690852	2693991	2690877	2693891		orf19.12694|IPF21994.1|IPF10406.2|Contig4-1973_0007|Contig4-2357_0011|orf6.2439|CA1110|CaO19.12694|DIS3|CaO19.5229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2693909	2695002	-	orf19.5228	2693909	2695002	1	2695002	2693909	2694636	2694013	RIB3	orf19.12693|orf6.2440|IPF10407.2|IPF18577.2|Contig4-1973_0005|orf6.3689|CA1111|CaO19.5228|RIB3.5f	3,4-Dihydroxy-2-butanone 4-phosphate synthase; homodimeric enzyme of riboflavin biosynthesis; converts ribulose 5-phosphate to L-3,4-dihydroxy-2-butanone 4-phosphate; transcription regulated on yeast-hyphal switch, macrophage interaction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2695794	2696661	+	orf19.5227	2695794	2696661	1	2695794	2696661	2695968	2696465		orf19.12692|IPF18759.2|IPF10410.1|Contig4-1973_0002|orf6.2441|orf6.3688|CA1974|CaO19.5227|IPF10410	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2696438	2697992	-	orf19.5226	2696438	2697992	1	2697992	2696438	2697872	2696598	WRS1	orf19.12691|IPF18578.2|IPF10411.2|Contig4-2921_0012|orf6.3687|CA1973|CaO19.5226|CaO19.12691	Putative tRNA-Trp synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2698087	2699362	-	orf19.5225.2	2698087	2699362	2	2699362|2698734	2699151|2698087	2699181	2698355	RPL27A	IPF19343.2|IPF10412.2|CA1972	Predicted ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2699638	2700109	-	orf19.5225	2699638	2700109	1	2700109	2699638	2700109	2699732		IPF10414.1|Contig4-2423_0001|orf6.3686|CaO19.5225	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2700359	2703193	-	orf19.5224	2700359	2703193	1	2703193	2700359	2703193	2700359		orf19.12690|IPF17210.3|IPF10418.1|Contig4-2423_0002|orf6.320|orf6.3685|CA1971|CaO19.5224|PKH1|PKH2	Putative protein of unknown function; mRNA binds to She3p and is localized to hyphal tips; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2703358	2703785	-	orf19.5223	2703358	2703785	1	2703785	2703358	2703785	2703387		IPF10862.3|IPF28108.1|Contig4-2423_0005|orf6.3684|CaO19.5223	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2704457	2707759	+	orf19.5221	2704457	2707759	1	2704457	2707759	2704703	2707654		orf19.12688|IPF19391.2|IPF10863.2|orf6.3682|orf6.210|orf6.3683|CA1969|CA1970|orf19.5222|IPF18579.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2707878	2708966	+	orf19.5220	2707878	2708966	1	2707878	2708966	2707934	2708791		orf19.12687|IPF21958.1|IPF10864.2|Contig4-2993_0009|orf6.3681|CA1968|CaO19.5220|REX4|CaO19.12687|IPF10864	Predicted ORF in Assemblies 19, 20 and 21; increased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2708829	2717400	-	orf19.5219	2708829	2717400	1	2717400	2708829	2717074	2709143	IRA2	orf19.12686|IPF21959.1|IPF10866.2|orf6.3680|CA1967|CaO19.5219|IPF10866	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2718527	2718879	+	ntar_249	2718527	2718879	1	2718527	2718879					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2718529	2719038	-	orf19.69.2	2718529	2719038	1	2719038	2718529	2719038	2718745		IPF27195.1|IPF29971.1|Contig4-1654_0004|orf6.6543	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2718980	2719122	+	ntar_250	2718980	2719122	1	2718980	2719122					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2720131	2720868	+	orf19.69	2720131	2720868	1	2720131	2720868	2720131	2720868		orf19.7723|IPF27193.1|IPF17131.2|orf6.1692|CA0644|CaO19.69|CaO19.7723|IPF17131	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	2720924	2722156	+	orf19.68.2	2720924	2722156	2	2720924|2721196	2721109|2722156	2721027	2721529		IPF27197.1|IPF17130.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2721491	2721979	-	ntar_251	2721491	2721979	1	2721979	2721491	2721694	2721533			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2722253	2727512	+	orf19.3767	2722253	2727512	1	2722253	2727512	2722961	2727364		orf19.11251|PEP1|IPF23513.1|IPF15204.2|Contig4-3056_0041|orf6.3952|CA2171|CaO19.11251|CaO19.3767|PEP1.3eoc|PEP1.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2727637	2727733	-	tw(cca)1	2727637	2727733	2	2727733|2727672	2727697|2727637				tW(CCA)1.2	tRNA-Trp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2729233	2733831	+	orf19.3765	2729233	2733831	1	2729233	2733831	2729519	2733700	RAX2	orf19.11249|IPF23515.1|IPF15377.2|Contig4-2657_0017|orf6.3954|CA2172|CaO19.3765|CaO19.11249|IPF15377	Protein of unknown function; detected at yeast-form cell plasma membrane by mass spectrometry; transcription is filament induced and negatively regulated by Rim101p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2734093	2736593	+	orf19.3764	2734093	2736593	1	2734093	2736593	2734270	2736549	GSG1	orf19.11248|IPF23501.1|IPF18527.1|orf6.3955|CA2173|CaO19.11248|CaO19.3764|IPF18527	Protein not essential for viability; similar to S. cerevisiae Gsg1p, which is a subunit of the TRAPP complex involved in targeting of ER-to-Golgi transport vesicles [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2736465	2738138	-	orf19.3763	2736465	2738138	1	2738138	2736465	2738052	2736673		orf19.11247|IPF23505.1|IPF20096.1|Contig4-2804_0018|orf6.3956|CA2174|CaO19.3763|CaO19.11247|IPF20096	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2738325	2739109	+	orf19.3762	2738325	2739109	1	2738325	2739109	2738399	2738935		orf19.11246|IPF23511.1|IPF8892.2|Contig4-2804_0015|orf6.3957|CA2175|CaO19.11246|CaO19.3762|IPF8892	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2738951	2741807	-	orf19.3761	2738951	2741807	1	2741807	2738951	2741772	2739034	CDC54	orf19.11245|IPF8893.2|IPF18798.2|Contig4-2804_0013|orf6.2267|orf6.3958|CA2176|CaO19.3761|MCM4	Transcription is regulated by Nrg1p and Mig1p; periodic mRNA expression, peak at cell-cycle M/G1 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2742044	2743158	-	orf19.3760	2742044	2743158	3	2743158|2742972|2742817	2743054|2742877|2742044	2743158	2742044	DLH1	orf19.11244|IPF18526.1|IPF23502.1|IPF23509.1|IPF28648.1|IPF8896.2|IPF8895.2|Contig4-2804_0012|orf6.2266|orf6.3959|CA1007|DLH1.3f	[NOT TRANSCRIBED?] Functional homolog of S. cerevisiae Dmc1p, which is a meiosis-specific protein [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2743237	2744704	-	orf19.3759	2743237	2744704	1	2744704	2743237	2744638	2743298		orf19.11243|IPF23508.1|IPF8898.2|Contig4-2804_0009|orf6.2265|CA1005|CaO19.11243|CaO19.3759|LPG7	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2744817	2746692	+	orf19.3758	2744817	2746692	1	2744817	2746692	2745011	2746438		orf19.11242|IPF23507.1|IPF8901.2|Contig4-2804_0004|Contig4-2804_0006|orf6.2264|CA1004|CaO19.11242|CaO19.3758|IPF8901	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2746814	2747600	+	orf19.3757	2746814	2747600	1	2746814	2747600	2746930	2747274	ATP20	orf19.11241|IPF23516.1|IPF8902.2|Contig4-2804_0001|orf6.2263|CA1003|CaO19.3757|CaO19.11241	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p; flucytosine induced; caspofungin repressed; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2747682	2749675	-	orf19.3756	2747682	2749675	1	2749675	2747682	2749675	2747753	CHR1	orf19.11240|IPF23503.1|IPF8903.2|Contig4-2804_0019|orf6.2262|CA1002|CaO19.3756|CaO19.11240|ROK1.3f|ROK1.3	Predicted DEAD-box ATP-dependent RNA helicase, functional homolog of S. cerevisiae Rok1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2749725	2750806	+	orf19.3755	2749725	2750806	1	2749725	2750806	2749794	2750456		orf19.11239|orf19.13720|IPF23510.1|IPF18800.1|IPF20807.1|IPF11656.2|Contig4-2678_0018|orf6.2261|orf6.5792|CA3515|orf19.6363|CaO19.3755|MRPL152|CaO19.11239	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2752332	2757111	+	orf19.6362	2752332	2757111	1	2752332	2757111	2752581	2756981	SPA2	orf19.13719|orf6.5791|IPF20811.1|IPF11245.2|Contig4-2678_0013|CA3514|CaO19.13719|CaO19.6362|IPF11245	Protein involved in cell polarity, Spitzenkorper formation; required for mouse virulence; localizes to hyphal tip; has cell-cycle regulated localization in yeast-form cells; functional domains conserved with S. cerevisiae Spa2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2757057	2757917	-	orf19.6360	2757057	2757917	1	2757917	2757057	2757810	2757136		orf19.13717|IPF20805.1|IPF11246.2|Contig4-2678_0010|orf6.5789|CA3513|CWC15|CaO19.6360|CaO19.13717|IPF11246	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2758110	2759050	+	orf19.6359	2758110	2759050	1	2758110	2759050	2758245	2758646		orf19.13716|IPF20812.1|IPF11247.2|Contig4-2678_0008|orf6.5788|CA3512|CaO19.13716|SOM1|CaO19.6359|IPF11247	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2758629	2759567	-	orf19.6358	2758629	2759567	2	2759567|2759196	2759280|2758629	2759290	2758794		orf19.13715|IPF20810.1|IPF11248.2|Contig4-2678_0007|orf6.5787|CA3511|MMS2|CaO19.13715|CaO19.6358	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2759706	2761954	+	orf19.6357	2759706	2761954	1	2759706	2761954	2759755	2761845		orf19.13714|IPF20796.1|IPF11251.2|Contig4-2678_0004|Contig4-2678_0005|orf6.5786|CA3510|MAD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2761793	2764614	-	orf19.6356	2761793	2764614	1	2764614	2761793	2764614	2761879		orf19.13713|IPF20795.1|IPF19783.1|Contig4-2678_0002|orf6.5785|CA3509|CaO19.6356|PRP6|CaO19.13713	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	2764752	2766517	+	orf19.6355	2764752	2766517	1	2764752	2766517	2764811	2766364		orf19.13712|IPF20800.1|IPF11376.2|Contig4-2117_0001|orf6.5784|CA3508|RRB1|CaO19.6355|CaO19.13712|RSA2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2766313	2767192	-	orf19.6354	2766313	2767192	1	2767192	2766313	2767100	2766450		orf19.13711|IPF20808.1|IPF11375.2|Contig4-2117_0002|orf6.5783|CA3507|CaO19.6354|CaO19.13711|IPF11375	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2767663	2769944	+	orf19.6353	2767663	2769944	1	2767663	2769944	2768204	2769913		orf19.13710|IPF20797.1|IPF11374.2|orf6.5782|CA3506|LPF40|CaO19.6353|CaO19.13710|IFA5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2770205	2772028	-	orf19.6351	2770205	2772028	1	2772028	2770205	2771901	2770498		orf19.13708|IPF19114.2|IPF11372.2|Contig4-2669_0002|orf6.5780|orf6.880|CA3505|CaO19.6351|IPF11372	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2772540	2772781	+	ntar_252	2772540	2772781	1	2772540	2772781					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2772553	2773095	-	orf19.6350	2772553	2773095	1	2773095	2772553	2773095	2772553		orf19.13707|IPF15889.1|IPF11369.2|Contig4-2300_0002|orf6.5779|orf6.879|CA3504|CaO19.6350|IPF11369	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2774410	2775990	+	orf19.6349	2774410	2775990	1	2774410	2775990	2774814	2775821	RVS162	orf19.13706|IPF19115.1|IPF15890.2|Contig4-2300_0006|orf6.5778|orf6.877|orf6.878|CA3503|RVS99|CaO19.6349|IPF15890	Protein containing a BAR domain, which is found in proteins involved in membrane curvature; null mutant does not display the endocytic, hyphal growth, virulence, or cell wall defects exhibited by mutants in related genes RVS161 and RVS167 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2776637	2779680	+	orf19.6348	2776637	2779680	1	2776637	2779680	2776744	2779569		orf19.13704|IPF14485|IPF19117.2|IPF14485.2|Contig4-2232_0003|Contig4-2232_0005|orf6.5777|orf6.876|CA3502|CaO19.6348	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2779567	2781222	-	orf19.6347	2779567	2781222	1	2781222	2779567	2781210	2779648		orf19.13703|IPF20799.1|IPF14486.2|Contig4-2232_0002|orf6.5776|CA3501|CaO19.6347|CDC40|CaO19.13703	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2781333	2782477	+	orf19.6346	2781333	2782477	1	2781333	2782477	2781378	2782343		orf19.13702|IPF20804.1|IPF14487.2|Contig4-2232_0001|orf6.5775|CA3500|CaO19.6346|IPF14487	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2782520	2785459	+	orf19.6345	2782520	2785459	1	2782520	2785459	2782583	2785375	RPG1A	orf19.13701|IPF20794.1|IPF15252.2|Contig4-2851_0006|orf6.5774|CA3499|RPG1|CaO19.6345	Putative translation initiation factor; mutation confers hypersensitivity to roridin A and verrucarin A; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2785617	2786966	+	orf19.6344	2785617	2786966	1	2785617	2786966	2785714	2786886	RBK1	orf19.13700|IPF20801.1|IPF15253.2|Contig4-2421_0007|orf6.5773|CA3498|CaO19.6344	Protein not essential for viability; similar to S. cerevisiae Rbk1p, which is a ribokinase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2787017	2789003	-	orf19.6343	2787017	2789003	1	2789003	2787017	2788209	2787196		orf19.13699|IPF20802.1|IPF18329.1|orf6.5772|CA3497|FEN1|CaO19.6343|FEN11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2789460	2790122	+	orf19.6342	2789460	2790122	1	2789460	2790122	2789572	2790057		orf19.13698|IPF20806.1|IPF17064.2|Contig4-1616_0008|orf6.5771|CA3496|CaO19.6342|CaO19.13698|IPF17064	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2790259	2791328	+	orf19.6341	2790259	2791328	1	2790259	2791328	2790349	2791263		orf19.13697|IPF20803.1|IPF17066.2|Contig4-1616_0004|orf6.5770|CA3495|CaO19.13697|RIB7|CaO19.6341	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2791240	2792542	-	orf19.6340	2791240	2792542	2	2792542|2791935	2792240|2791240	2792314	2791366		orf19.13696|IPF20809.1|IPF17067.2|Contig4-1616_0003|orf6.5769|CA3494|RPB5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2792718	2796608	-	orf19.4913	2792718	2796608	1	2796608	2792718	2796467	2792838		orf19.12379|IPF22322.1|IPF15649.2|orf6.3292|CA1680|CaO19.4913|CaO19.12379|IPF15649	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2793139	2793328	+	ntar_253	2793139	2793328	1	2793139	2793328					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2797746	2798624	+	orf19.4914	2797746	2798624	1	2797746	2798624	2797901	2798254		orf19.12380|IPF22319.1|IPF12676.2|Contig4-2257_0005|orf6.3293|CA1681|CaO19.12380|CaO19.4914|IPF12676	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2799719	2800493	+	orf19.4914.1	2799719	2800493	1	2799719	2800493	2799928	2800161			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2800473	2802440	-	orf19.4916	2800473	2802440	1	2802440	2800473	2802440	2800971		orf19.12382|IPF22260.1|IPF19926.1|Contig4-2257_0013|Contig4-2257_0014|Contig4-2257_0016|orf6.3295|CA6216|YFW2|CaO19.12382|CaO19.4916|IPF12669.3f	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	2802497	2803144	-	orf19.4917	2802497	2803144	1	2803144	2802497	2803144	2802497		orf19.12383|IPF22284.1|IPF12669.2|Contig4-1725_0008|orf6.3296|CA6217|CaO19.4917|CaO19.12383|IPF12669.5f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	2803638	2805337	-	orf19.4918	2803638	2805337	1	2805337	2803638	2805337	2803778		orf19.12384|IPF13890.3|IPF18629.1|Contig4-2364_0002|orf6.3297|orf6.1451|CA1682|TRA98|CaO19.12384|CaO19.4918|Cirt3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2805665	2807341	+	orf19.4919	2805665	2807341	1	2805665	2807341	2805665	2806975		orf19.12385|orf19.12386|IPF19869.2|IPF18628.1|Contig4-1725_0012|orf6.3298|orf6.3299|CA1683|orf19.4920|CaO19.4919|CTN4|CaO19.12385|Cirt5|Cirt	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2807971	2810256	+	orf19.4921	2807971	2810256	1	2807971	2810256	2807971	2810142		orf19.12387|IPF13892.3|IPF6070.2|Contig4-1725_0002|Contig4-1725_0005|orf6.3300|CA1684|CaO19.4921|YFW1|CaO19.12387|IPF6070	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2810223	2810780	-	ntar_254	2810223	2810780	1	2810780	2810223					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2811829	2812406	+	orf19.4921.1	2811829	2812406	1	2811829	2812406	2812003	2812167			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2812379	2813615	-	orf19.4922	2812379	2813615	3	2813615|2813441|2813321	2813532|2813405|2812379	2813567	2812558		orf19.12388|IPF22281.1|IPF6076.2|Contig4-2999_0018|orf6.5902|CA3594|CaO19.4922|CaO19.12388|IPF6076|IPF6076.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2813793	2815349	-	orf19.4923	2813793	2815349	1	2815349	2813793	2815349	2813793		orf19.12389|IPF22248.1|IPF6079.1|Contig4-2999_0016|orf6.5903|CA3595|CaO19.4923|CaO19.12389|IPF6079	Predicted membrane transporter, member of the sugar porter (SP) family, major facilitator superfamily (MFS); caspofungin induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	2815474	2815686	-	orf19.4923.1	2815474	2815686	1	2815686	2815474	2815686	2815474			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2815851	2819954	+	orf19.4924	2815851	2819954	1	2815851	2819954	2815904	2819872		orf19.12390|IPF22318.1|IPF6085.2|Contig4-2999_0010|Contig4-2999_0011|orf6.5904|CA3596|CaO19.12390|CaO19.4924|IPF6085	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2819840	2825460	-	orf19.4927	2819840	2825460	1	2825460	2819840	2825216	2820018	BNI1	orf19.12393|IPF22291.1|IPF6091.1|Contig4-2999_0009|orf6.5907|CA3597|CaO19.4927|CaO19.12393	Formin; role in cytoskeletal organization, cell polarity; role in systemic virulence in mouse; cell-cycle regulated localization to site of polarized growth, bud neck; localizes to Spitzenkorper of hyphae, minor localization at septum [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2825807	2825971	+	ntar_255	2825807	2825971	1	2825807	2825971					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2827146	2829906	-	orf19.4928	2827146	2829906	1	2829906	2827146	2829597	2827342		orf19.12394|IPF6094.2|IPF28177.1|Contig4-2999_0005|orf6.5908|CA3598|SEC2|CaO19.4928	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2830765	2831724	+	ntar_256	2830765	2831724	1	2830765	2831724	2831135	2831299			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2831923	2835746	+	orf19.4929	2831923	2835746	1	2831923	2835746	2832089	2835613		orf19.12395|IPF22332.1|IPF19785.1|Contig4-2999_0001|Contig4-2999_0002|orf6.5909|CA3599|CaO19.4929|CaO19.12395|IPF19785	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2835623	2836370	-	orf19.4930	2835623	2836370	1	2836370	2835623	2836345	2835767	SPC3	orf19.12396|orf6.5910|IPF22286.1|IPF15621.2|Contig4-2611_0002|CA3600|CaO19.12396|CaO19.4930	Essential protein; similar to S. cerevisiae Spc3p, a component of the signal peptidase complex required for signal peptidase activity; predicted integral ER membrane protein; complements spc3 and suppresses sec61 S. cerevisiae mutants [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2836495	2838978	-	orf19.4931	2836495	2838978	1	2838978	2836495	2838889	2836544		orf19.12397|IPF22211.1|IPF15618.2|Contig4-2611_0003|Contig4-2611_0004|orf6.5911|YNL247WA|CA3601|CaO19.12397|CaO19.4931|IPF15618	Putative tRNA-Cys synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2839066	2839572	-	ntar_1425	2839066	2839572	2	2839572|2839301	2839505|2839066					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2839810	2841018	+	orf19.4931.1	2839810	2841018	2	2839810|2840408	2840053|2841018	2839943	2840692	RPL14	IPF22199.1|IPF12937.2|Contig4-2611_0007|CA3602|RPL14B|RPL14B.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2840990	2843481	-	orf19.4932	2840990	2843481	1	2843481	2840990	2843438	2841153		orf19.12398|IPF22213.1|IPF12940.2|Contig4-2611_0010|orf6.5912|CA3603|MEF1|CaO19.12398|CaO19.4932	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2843627	2845071	-	orf19.4933	2843627	2845071	1	2845071	2843627	2845037	2843736	FAD3	orf19.12399|IPF22268.1|IPF12942.2|Contig4-2611_0011|orf6.5913|CA3604|CaO19.12399|ODE2|CaO19.4933|IPF12942	Omega-3 fatty acid desaturase, involved in production of alpha-linolenic acid, which is a major component of membranes; caspofungin induced; Plc1p-regulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2848585	2850423	+	orf19.4934	2848585	2850423	1	2848585	2850423	2848705	2849916	OP4	orf19.12400|IPF17845.2|IPF15453.1|Contig4-2962_0020|orf6.5914|orf6.6056|OPS4|CA3713|CaO19.4934	Ala- Leu- and Ser-rich protein; N-terminal hydrophobic region; possible glycosylation; gene is transcribed specifically in opaque-phase cells, repressed by alpha pheromone in opaque MTLa homozygotes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2853604	2853999	+	orf19.4936	2853604	2853999	1	2853604	2853999	2853604	2853999		orf19.12402|IPF22293.1|IPF7891.2|Contig4-2962_0015|orf6.6054|CA3712|CaO19.4936|CaO19.12402|IPF7891	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2855099	2855375	+	orf19.4936.1	2855099	2855375	1	2855099	2855375	2855099	2855314			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2855537	2855791	+	ntar_257	2855537	2855791	1	2855537	2855791					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2856255	2860412	-	orf19.4937	2856255	2860412	1	2860412	2856255	2859992	2856351	CHS3	orf19.12403|orf19.12404|IPF22336.1|IPF22321.1|IPF7889.2|IPF7886.2|Contig4-2962_0013|orf6.6053|orf6.6052|CHS3.3f|CHS3.5f|CA3711|CA3710|orf19.4938	Major chitin synthase of yeast-form and hyphal cells; synthesizes short-chitin fibrils; Chs4p-activated; transcription induced at yeast-hyphal transition; Chs1p and Chs2p, but not Chs3p, are inhibited by the protoberberine HWY-289 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2861144	2866365	-	orf19.4939	2861144	2866365	1	2866365	2861144	2866254	2861350		orf19.12405|IPF22294.1|IPF7880.2|Contig4-2962_0004|Contig4-2962_0005|Contig4-2962_0008|orf6.6051|CA3709|CaO19.4939|MON2|CaO19.12405|IPF7880	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2866591	2868635	-	orf19.4940	2866591	2868635	1	2868635	2866591	2868423	2866744		orf19.12406|IPF22247.1|IPF7876.2|Contig4-2962_0002|orf6.6050|HIP1|CA3708|CaO19.4940|CaO19.12406	Putative histidine permease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2868870	2869912	-	orf19.4941	2868870	2869912	1	2869912	2868870	2869829	2869020	TYE7	orf19.12407|IPF22280.1|IPF5663.1|Contig4-2994_0001|orf6.6049|CA3707|CaO19.12407|CaO19.4941	Transcription factor with bHLH (basic region, helix-loop-helix) motif involved in control of glycolysis; hyphally regulated via Cph1p, Cyr1p; flucytosine, Hog1p induced; amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2871070	2872104	+	orf19.4942	2871070	2872104	1	2871070	2872104	2871337	2871705		orf19.12408|IPF22323.1|IPF28213.1|Contig4-2994_0003|orf6.6048|CaO19.12408|CaO19.4942	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	2874278	2875711	+	orf19.4943	2874278	2875711	1	2874278	2875711	2874278	2875654	PSA2	orf19.12409|PSA1|IPF22264.1|IPF5668.1|Contig4-2994_0010|orf6.6047|CA3706|CaO19.12409|CaO19.4943	Predicted ORF in Assemblies 19, 20 and 21; macrophage-downregulated gene; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2875601	2879416	-	orf19.4945	2875601	2879416	1	2879416	2875601	2879371	2875727	MSH6	orf19.12411|IPF22327.1|IPF5670.1|Contig4-2994_0011|orf6.6045|CA3705|CaO19.12411|CaO19.4945	Protein similar to S. cerevisiae Msh6p, which is involved in mismatch repair; repressed under Cdc5p depletion [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2879648	2880409	+	orf19.4946	2879648	2880409	1	2879648	2880409	2879648	2880409		orf19.12412|IPF22282.1|IPF5671.2|Contig4-2994_0014|orf6.6044|CA3704|CaO19.4946|CaO19.12412|IPF5671	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2879949	2880166	-	ntar_258	2879949	2880166	1	2880166	2879949					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2880569	2881410	+	orf19.4947	2880569	2881410	1	2880569	2881410	2880732	2881241		IPF18761.2|IPF5672.2|Contig4-2994_0015|orf6.6043|CA1104|CaO19.4947|IPF18761|IPF18761.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2881235	2882794	-	orf19.4948	2881235	2882794	1	2882794	2881235	2882679	2881465		orf19.12413|IPF5673.2|IPF28194.1|Contig4-2994_0016|orf6.2434|orf6.6042|CA1103|REX3|CaO19.4948|IPF5673	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2883066	2883368	-	orf19.4949	2883066	2883368	1	2883368	2883066	2883368	2883066		IPF28234.1|orf6.6041|CaO19.4949	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2883397	2883771	+	ntar_259	2883397	2883771	1	2883397	2883771	2883397	2883615			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2883750	2886365	-	orf19.4950	2883750	2886365	1	2886365	2883750	2886263	2883822	AKR1	orf19.12414|IPF22207.1|IPF5675.1|Contig4-2994_0019|orf6.2433|CA1102|CaO19.4950|CaO19.12414	Ankyrin-repeat protein; increased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2887636	2889563	+	orf19.4951	2887636	2889563	1	2887636	2889563	2888158	2889426		orf19.12415|IPF5678.1|IPF28195.1|Contig4-2994_0024|orf6.2432|CA1101|CaO19.4951|IPF5678	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2891054	2893171	+	orf19.4952	2891054	2893171	1	2891054	2893171	2891695	2892633		orf19.12417|IPF5681.2|IPF19696.1|Contig4-1718_0002|orf6.1485|orf6.2430|CA1100|CaO19.4952|IPF5681	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2893362	2894169	+	orf19.4952.1	2893362	2894169	2	2893362|2893647	2893539|2894169	2893446	2894008		IPF22326.1|IPF13976.2|Contig4-2314_0003	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2894251	2895373	+	orf19.4953	2894251	2895373	1	2894251	2895373	2894367	2895263		orf19.12418|IPF19466.2|IPF13975.2|Contig4-2314_0004|orf6.1486|orf6.44|CA0511|CaO19.4953|IPF13975	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2895226	2896307	-	orf19.4954	2895226	2896307	1	2896307	2895226	2896155	2895565		orf19.12419|IPF19467.1|IPF13974.2|Contig4-2314_0005|orf6.1487|orf6.43|CA0512|CaO19.4954|PPA1|VMA16	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2896460	2896690	+	ntar_260	2896460	2896690	1	2896460	2896690					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2896806	2898392	+	orf19.4955	2896806	2898392	2	2896806|2896939	2896878|2898392	2896806	2898392		orf19.12420|IPF22262.1|IPF13972.2|Contig4-3096_0020|orf6.1488|CA0513|SPS2|CaO19.4955|IPF13972	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=E]
Ca21chr1	2898330	2901591	-	orf19.4956	2898330	2901591	1	2901591	2898330	2901442	2898458	RPN1	orf19.12421|IPF9623.2|IPF19458.2|Contig4-1464_0001|Contig4-1464_0002|Contig4-2724_0012|orf6.2660|orf6.52|CA1252|CaO19.4956	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2901750	2901977	+	ntar_261	2901750	2901977	1	2901750	2901977					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2902432	2904676	+	orf19.4958	2902432	2904676	1	2902432	2904676	2902728	2904596	ECM25	orf19.12423|IPF9624.2|IPF19459.2|Contig4-2724_0008|orf6.2658|CA6293|IPF9624.3f	Non-essential protein involved in cell morphogenesis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2904704	2906833	-	orf19.4959	2904704	2906833	1	2906833	2904704	2906720	2904999		orf19.12424|IPF9626.1|IPF28186.1|Contig4-2724_0007|orf6.2657|CA1250|CaO19.4959|IPF9626	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2907188	2908570	-	orf19.4960	2907188	2908570	1	2908570	2907188	2908446	2907412		orf19.12425|IPF22274.1|IPF9628.2|Contig4-2724_0004|orf6.2656|CA1249|CaO19.12425|SPE4|CaO19.4960	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2909166	2909770	-	ntar_262	2909166	2909770	1	2909770	2909166	2909537	2909394			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2911515	2913771	+	orf19.4961	2911515	2913771	1	2911515	2913771	2911732	2913486	STP2	orf19.12426|IPF22239.1|IPF15844.2|Contig4-1523_0002|orf6.2844|CA1372|CaO19.4961|CaO19.12426|IPF15844	Transcription factor; activates transcription of genes encoding amino acid permeases; activated via amino-acid-induced proteolytic processing (Ssy1p and Csh3p dependent); also amino-acid-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2913658	2914912	-	orf19.4962	2913658	2914912	1	2914912	2913658	2914912	2913785		orf19.12427|IPF22269.1|IPF19731.1|Contig4-1523_0004|Contig4-2827_0019|orf6.2843|CA1371|CaO19.12427|CaO19.4962|IPF19731	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2915065	2916340	+	orf19.4963	2915065	2916340	1	2915065	2916340	2915143	2916339		orf19.12428|IPF22271.1|IPF15966.2|Contig4-1682_0003|orf6.2842|CA1370|CaO19.4963|TCI1|CaO19.12428	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2916144	2916334	-	ntar_263	2916144	2916334	1	2916334	2916144					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2916541	2917612	+	orf19.4964	2916541	2917612	1	2916541	2917612	2916611	2917456		orf19.12429|IPF22279.1|IPF15968.2|Contig4-1682_0001|orf6.2841|CA1369|CaO19.12429|CaO19.4964|IPF15968	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2917666	2919850	+	orf19.4965	2917666	2919850	1	2917666	2919850	2917715	2919805		orf19.12430|IPF22223.1|IPF15969.2|orf6.2840|CA1368|CaO19.4965|CaO19.12430|IPF15969	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2919892	2922610	-	orf19.4966	2919892	2922610	1	2922610	2919892	2922382	2920187		orf19.12431|IPF16755|IPF22217.1|IPF16755.2|Contig4-2421_0001|orf6.2839|YPR021C|CA1367|AGC1|CaO19.4966|CaO19.12431	Protein not essential for viability; transcription is alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2925482	2926164	+	orf19.4967	2925482	2926164	2	2925482|2925638	2925567|2926164	2925549	2926017	COX19	orf19.12432|IPF13215.1|IPF17679.1|Contig4-2421_0006|orf6.1897|orf6.2838|CA0768|CaO19.4967	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2926044	2931142	-	orf19.4969	2926044	2931142	2	2931142|2930711	2930784|2926044	2930787	2926204	KEM1	orf19.12434|XRN1|IPF13214.2|IPF28204.1|Contig4-2907_0019|orf6.2836|orf6.1895|KEM1.3|CA0767|CaO19.4969	5'-->3' exoribonuclease; required for wild-type filamentous growth; not essential for viability; functionally complements S. cerevisiae kem1 mutant slow growth & mating and partially complements invasive growth & pseudohyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2932190	2933917	-	orf19.4970	2932190	2933917	1	2933917	2932190	2933917	2932190		orf19.12435|IPF15335.2|IPF28185.1|Contig4-2387_0004|orf6.180|orf6.1894|CA0766|CaO19.4970|IPF15335	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2935076	2938628	-	orf19.4972	2935076	2938628	1	2938628	2935076	2937571	2935625		orf19.12437|IPF7964.2|IPF15920.1|Contig4-2387_0006|orf6.1556|orf6.1893|orf6.3141|CA0556|CaO19.4972|IPF15920	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2944456	2947553	+	orf19.4975	2944456	2947553	1	2944456	2947553	2944794	2947553	HYR1	orf19.12440|Contig4-2860_0006|GPX1|IPF19734.1|IPF19516.2|orf6.3143|orf6.857|CA1576|CaO19.4975|CA0557|HYR1.53|IPF7957.2	Nonessential, GPI anchored, predicted cell wall protein; macrophage-induced protein; induced in hyphae; induction associated with azole resistance; regulated by Rfg1p, Efg1p, Nrg1p, Tup1p, Cyr1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr1	2951250	2951606	+	orf19.4976	2951250	2951606	1	2951250	2951606	2951250	2951606		orf19.12443|IPF22315.1|IPF28200.1|orf6.3146|orf6.858|CaO19.4976	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2952187	2954246	+	orf19.4979	2952187	2954246	1	2952187	2954246	2952225	2954225	KNS1	orf19.12446|IPF11410.2|IPF28178.1|Contig4-2706_0013|orf6.3149|CA1577|CaO19.4979|CaO19.12446	Protein not essential for viability; similar to S. cerevisiae Kns1p, which is a protein kinase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2955674	2957947	+	orf19.4980	2955674	2957947	1	2955674	2957947	2955762	2957732	HSP70	orf19.12447|HS71|SSA1|IPF22233.1|IPF11819.2|SSA4|Contig4-2251_0001|CA1230|CaO19.4980|CaO19.12447|orf6.2627	Putative hsp70 chaperone; role in sensitivity to beta-defensins; heat-shock, amphotericin B, Cd, ketoconazole-induced; farnesol-downregulated in biofilm; farnesol-induced; surface localized in yeast-form and hyphal cells; antigenic in host [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2957899	2960767	-	orf19.4981	2957899	2960767	1	2960767	2957899	2960132	2958018		orf19.12448|IPF22224.1|IPF11817.2|Contig4-2251_0004|orf6.2628|CA1231|CaO19.4981|CaO19.12448|IPF11817	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2960986	2962844	-	orf19.4982	2960986	2962844	1	2962844	2960986	2962728	2961100		orf19.12449|IPF22252.1|IPF11815.2|Contig4-2494_0015|orf6.2629|CA1232|CaO19.12449|TGL99|CaO19.4982|IPF11815	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2963219	2964292	-	orf19.4983	2963219	2964292	1	2964292	2963219	2964210	2963395		orf19.12450|IPF1758.2|IPF11814.1|Contig4-2494_0009|orf6.2630|orf6.8026|CA1233|CaO19.4983|IPF11814	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2964351	2966422	+	orf19.4984	2964351	2966422	1	2964351	2966422	2964525	2966081		orf19.12451|IPF1760.2|IPF22206.1|IPF19907.2|IPF18120.1|Contig4-2494_0006|orf6.2631|orf6.8025|CA5275|IPF1760.3f|CA5276|IPF1759.53f|IPF1759.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2966582	2968760	+	orf19.4985	2966582	2968760	1	2966582	2968760	2966690	2968444	GUP1	orf19.12452|IPF22244.1|IPF1764.2|Contig4-2494_0003|orf6.8024|CA5274|CaO19.4985|CaO19.12452|IPF1764	Protein with role in glycerol uptake; functionally complements growth of S. cerevisiae gup1 mutant under salt stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2968520	2969961	-	orf19.4987	2968520	2969961	1	2969961	2968520	2969909	2968560	NUP49	orf19.12454|IPF22266.1|IPF1766.2|Contig4-2494_0001|orf6.8022|CA5273|CaO19.4987|CaO19.12454	Nuclear pore protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2970007	2971788	+	orf19.4988	2970007	2971788	1	2970007	2971788	2970121	2971638		orf19.12455|IPF22259.1|IPF1770.1|Contig4-3025_0024|orf6.8021|CA5272|CaO19.4988|CaO19.12455|IPF1770	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2972831	2973662	+	ntar_264	2972831	2973662	1	2972831	2973662					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2975072	2975301	+	ntar_265	2975072	2975301	1	2975072	2975301					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2976102	2979816	+	orf19.4991	2976102	2979816	1	2976102	2979816	2976356	2979172	MPT5	orf19.12458|IPF22202.1|IPF1777.1|Contig4-3025_0018|Contig4-3025_0020|orf6.8018|CA5271|CaO19.4991|CaO19.12458|IPF1777	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2981440	2984060	+	orf19.4993	2981440	2984060	1	2981440	2984060	2981615	2984005	SEC18	orf19.12460|orf19.12461|IPF22276.1|IPF22225.1|IPF22267.1|IPF1784.2|IPF1785.2|IPF1786.2|Contig4-3025_0011|Contig4-3025_0012|Contig4-3025_0013|orf6.8016|orf6.8015|CA5270|CA5268|orf19.4994|SEC18.5f	Functional homolog of S. cerevisiae Sec18p, which acts in protein transport; conserved ATP binding site; not glycosylated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2985121	2986353	+	orf19.4995	2985121	2986353	1	2985121	2986353	2985121	2986353		orf19.12462|IPF22270.1|IPF1787.1|Contig4-3025_0010|orf6.8014|CA5267|CaO19.12462|CaO19.4995|IPF1787.5f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2986453	2987427	+	orf19.4996	2986453	2987427	1	2986453	2987427	2986453	2987349		orf19.12463|IPF22278.1|IPF1789.1|Contig4-3025_0009|orf6.8013|CA5266|CaO19.4996|CaO19.12463|IPF1787.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2987591	2990214	-	orf19.4997	2987591	2990214	1	2990214	2987591	2990032	2987795	KIS2	orf19.12464|IPF22214.1|IPF1792.1|Contig4-3025_0006|Contig4-3025_0007|orf6.8012|CA5265|CaO19.4997|CaO19.12464|IPF1792	Scaffold protein of Snf1p complex; similar to S. cerevisiae Gal83p and Sip2p; interacts with Snf4p; interaction with Snf1p complex is regulated by carbon source, decreased on ethanol; N-terminal myristoylation; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2990653	2990797	+	ntar_266	2990653	2990797	1	2990653	2990797					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2991018	2991235	+	ntar_267	2991018	2991235	1	2991018	2991235					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2993085	2996480	+	orf19.4998	2993085	2996480	2	2993085|2993461	2993394|2996480	2993348	2996389		orf19.12465|IPF22198.1|IPF1798.2|orf6.8011|CA5264|CaO19.4998|CHA4|CaO19.12465|IPF1798	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2997027	2999019	+	orf19.5000	2997027	2999019	1	2997027	2999019	2997207	2998889	CYB2	orf19.12467|orf6.8009|IPF22249.1|IPF1801.1|CYB3|Contig4-3061_0027|CA5263|CaO19.12467|CaO19.5000	Protein described as precursor protein of cytochrome b2; transcriptionally regulated by iron; expression greater in high iron; alkaline downregulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2999251	2999602	-	ntar_268	2999251	2999602	1	2999602	2999251	2999576	2999430			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2999788	3001737	+	orf19.5001	2999788	3001737	1	2999788	3001737	2999889	3001664	CUP2	orf19.12468|IPF22242.1|IPF1804.1|Contig4-3061_0022|Contig4-3061_0024|orf6.8008|CA5262|CaO19.5001|HAA1|CaO19.12468|IPF1804	Protein not essential for viability; similar to S. cerevisiae Cup2p, which is a copper-binding transcription factor that activates transcription of metallothionein genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3001619	3003232	-	orf19.5003	3001619	3003232	1	3003232	3001619	3003092	3001746		orf19.12470|IPF22265.1|IPF1805.2|Contig4-3061_0021|orf6.8006|CA5261|CaO19.5003|CaO19.12470|IPF1805	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3003325	3006105	+	orf19.5004	3003325	3006105	1	3003325	3006105	3003486	3006032	RAD54	orf19.12471|IPF22209.1|IPF1807.1|Contig4-3061_0018|orf6.8005|CA5260|CaO19.5004|CaO19.12471	Protein similar to S. cerevisiae Rad54p, which is a DNA-dependent ATPase involved in DNA repair; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3005487	3006102	-	ntar_269	3005487	3006102	1	3006102	3005487	3005942	3005802			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3006313	3008456	+	orf19.5005	3006313	3008456	1	3006313	3008456	3006473	3008419	OSM2	orf19.12472|IPF22234.1|IPF1808.1|Contig4-3061_0016|orf6.8004|CA5259|CaO19.12472|OSM1|CaO19.5005	Protein described as mitochondrial fumarate reductase; regulated by Ssn6p, Gcn2p, and Gcn4p; Hog1p-downregulated; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3008348	3009103	-	orf19.5006	3008348	3009103	1	3009103	3008348	3009024	3008491	GCV3	orf19.12473|IPF22289.1|IPF1809.1|Contig4-3061_0015|orf6.8003|CA5258|CaO19.5006|CaO19.12473	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3009300	3010365	-	orf19.5006.1	3009300	3010365	2	3010365|3009851	3009924|3009300	3010010	3009603		IPF22222.1|Contig4-3061_0014|CA5256|orf19.5006.2|SNC2|CA5257|SNC2.exon2|IPF1811.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3011392	3013534	+	orf19.5007	3011392	3013534	2	3011392|3012132	3011473|3013534	3011464	3013252	ACT1	orf19.12474|ACT|IPF22272.1|IPF1819.1|Contig4-3061_0012|orf6.8002|CA5255	Actin; gene has intron; transcriptionally regulated by growth phase and by starvation; localizes to polarized growth site in budding and hyphal cells; required for wild-type Cdc42p localization; unprocessed N terminus [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3013367	3014001	-	orf19.5008.1	3013367	3014001	1	3014001	3013367	3013825	3013526		IPF22290.1|IPF1820.1|Contig4-3061_0011|CA5254|IPF1820	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3014055	3016087	+	orf19.5009	3014055	3016087	1	3014055	3016087	3014085	3016001		orf19.12476|IPF22235.1|IPF1821.1|Contig4-3061_0010|orf6.8000|CA5253|CaO19.5009|KEL3|CaO19.12476	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3015947	3017167	-	orf19.5010	3015947	3017167	1	3017167	3015947	3017083	3016103	DIM1	orf19.12477|IPF22277.1|IPF1822.1|Contig4-3061_0009|orf6.7999|CA5252|CaO19.5010|CaO19.12477	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Dim1p, which is an 18S rRNA dimethylase involved in rRNA modification and processing; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3017721	3020279	+	orf19.5011	3017721	3020279	1	3017721	3020279	3017916	3020192	KAR9	orf19.12478|IPF22215.1|IPF1824.1|Contig4-3061_0004|Contig4-3061_0005|Contig4-3061_0006|orf6.7998|CA5251|CaO19.5011|CaO19.12478|IPF1824	Protein similar to S. cerevisiae Kar9p, which has role in mitotic spindle positioning; nonessential; localizes to bud tip, bud neck, hyphal tip; wild-type localization requires actin and microtubule cytoskeleton; induced by alpha factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3019663	3020883	-	orf19.5012	3019663	3020883	1	3020883	3019663	3020879	3020283		orf19.12479|IPF22285.1|IPF1826.2|Contig4-3061_0003|orf6.7997|CA5250|CaO19.5012|CaO19.12479|IPF1826	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3021026	3022798	+	orf19.5013	3021026	3022798	1	3021026	3022798	3021071	3022705	AGM1	orf19.12480|IPF22253.1|IPF1827.2|Contig4-3061_0002|orf6.7996|CA5249|PCM1|CaO19.5013|CaO19.12480	Phosphoacetylglucosamine mutase (N-acetylglucosamine-phosphate mutase); enzyme of UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3022296	3023568	-	orf19.5014	3022296	3023568	1	3023568	3022296	3023536	3022829		orf19.12481|IPF22283.1|IPF1828.1|Contig4-3061_0001|orf6.7995|CA5248|CaO19.12481|CaO19.5014|IPF1828	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3025427	3031015	+	orf19.5015	3025427	3031015	1	3025427	3031015	3026140	3030825	MYO2	orf19.12482|IPF22298.1|IPF13531.2|Contig4-2345_0002|Contig4-2345_0004|orf6.7994|CA5247|CaO19.5015|CaO19.12482	Class V myosin; nonessential; required for wild-type actin cytoskeletal polarity, nuclear organization and migration, and hyphal growth; sole class V myosin in C. albicans; conserved myosin ATPase and tail domains [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3030836	3031451	-	orf19.5016	3030836	3031451	1	3031451	3030836	3031406	3031041		orf19.12483|IPF19808|IPF22314.1|IPF19808.1|Contig4-2345_0001|orf6.7993|CA5246|CaO19.12483|CaO19.5016	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3031584	3033599	-	orf19.5017	3031584	3033599	1	3033599	3031584	3033599	3031584		orf19.12484|IPF22231.1|IPF3048.2|Contig4-3075_0002|orf6.7992|CA5245|DUR32|CaO19.12484|CaO19.5017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3032213	3032718	+	ntar_270	3032213	3032718	1	3032213	3032718	3032446	3032622			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3033240	3033450	+	ntar_271	3033240	3033450	1	3033240	3033450	3033240	3033362			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3035108	3037466	+	orf19.5019	3035108	3037466	1	3035108	3037466	3035261	3037345		orf19.12486|IPF22226.1|IPF3043.1|Contig4-3075_0004|orf6.7990|CA5244|CaO19.5019|CaO19.12486|IPF3043	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3035482	3035670	-	ntar_272	3035482	3035670	1	3035670	3035482					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3037401	3038743	-	orf19.5020	3037401	3038743	1	3038743	3037401	3038662	3037640		orf19.12487|IPF22275.1|IPF3040.1|Contig4-3075_0006|orf6.7989|CA5243|CaO19.5020|CaO19.12487|IPF3040	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3038875	3040408	-	orf19.5021	3038875	3040408	1	3040408	3038875	3040358	3039105	PDX1	orf19.12488|IPF22263.1|IPF3038.1|Contig4-3075_0007|orf6.7988|CA5242|CaO19.12488|CaO19.5021	Pyruvate dehydrogenase complex protein X, an essential component of the mitochondrial pyruvate dehydrogenase complex which is involved in the respiratory pathway; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3041021	3043659	+	orf19.5022	3041021	3043659	1	3041021	3043659	3041533	3043548		orf19.12489|IPF22229.1|IPF3034.1|SMF2|Contig4-3075_0009|orf6.7987|CA5241|CaO19.12489|CaO19.5022|SMF3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3043640	3045169	-	orf19.5023	3043640	3045169	1	3045169	3043640	3045169	3043640	DAL7	orf19.12490|IPF3032|IPF22258.1|IPF3032.1|Contig4-3075_0010|orf6.7986|CA5240|CaO19.5023|CaO19.12490	Putative allantoate permease; fungal-specific (no human or murine homolog); not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3045802	3048283	-	orf19.5024	3045802	3048283	2	3048283|3047465	3048166|3045802	3048182	3045995	GND1	orf19.12491|IPF22257.1|IPF3028.2|Contig4-3075_0013|orf6.7985|CA5239|CaO19.5024|DOR14|CaO19.12491	Putative 6-phosphogluconate dehydrogenase; soluble protein in hyphae; farnesol-, macrophage-induced protein; antigenic in mouse; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3049142	3049811	+	ntar_273	3049142	3049811	1	3049142	3049811					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3051442	3053373	+	orf19.5025	3051442	3053373	1	3051442	3053373	3051624	3053207	MET3	orf19.12492|orf6.7984|IPF22255.1|IPF3022.1|Contig4-3075_0019|Contig4-3075_0020|CA5238|CaO19.5025|CaO19.12492	Putative ATP sulfurlyase of sulfate assimilation; repressed by Met or Cys, Sfu1p, or in fluconazole-resistant isolate; strongly induced on biofilm formation, even in presence of Met and Cys; Hog1p-, caspofungin-, possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3053446	3057630	-	orf19.5026	3053446	3057630	1	3057630	3053446	3057052	3053519		orf19.12493|IPF22331.1|IPF3021.1|Contig4-3075_0021|orf6.7983|CA5237|CaO19.5026|CaO19.12493|ZMS1	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3057469	3058059	+	ntar_274	3057469	3058059	1	3057469	3058059	3057811	3057981			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3060993	3061113	-	ntar_275	3060993	3061113	1	3061113	3060993					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3061122	3061194	-	ta(agc)7	3061122	3061194	1	3061194	3061122				tA(AGC)7.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3061366	3063562	-	orf19.5027	3061366	3063562	1	3063562	3061366	3063251	3061542	LCB2	orf19.12494|IPF22245.1|IPF3017.1|Contig4-3075_0027|orf6.7982|CA5236|CaO19.5027|CaO19.12494	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to aureobasidin A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3063852	3065578	-	orf19.5029	3063852	3065578	1	3065578	3063852	3065571	3063934	MODF	orf19.12496|IPF22250.1|IPF3015.1|Contig4-3075_0031|orf6.7980|CA5235|CaO19.5029|CaO19.12496|IPF3015	Predicted ORF in Assemblies 19, 20 and 21; ABC family protein; similar to E. coli ModF/PhrA protein, which may have a role in molybdate metabolism; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3065742	3065876	-	ntar_276	3065742	3065876	1	3065876	3065742					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3065917	3067270	+	orf19.5030	3065917	3067270	1	3065917	3067270	3066059	3067138		orf19.12497|IPF18123.2|IPF3014.1|Contig4-3075_0032|orf6.7979|CA5234|CaO19.5030|CaO19.12497|IPF3014	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3067493	3069954	+	orf19.5031	3067493	3069954	1	3067493	3069954	3067600	3069624	SSK1	orf19.12498|orf6.7978|IPF22230.1|IPF3012.2|CA5233|CaO19.12498|CaO19.5031	Response regulator of two-component system; role in oxidative stress response, cell wall biosynthesis, virulence, hyphal growth on solid media; expressed in hyphae and yeast-form cells; putative peroxisomal targeting sequence (PTS1) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3073023	3073272	+	ntar_277	3073023	3073272	1	3073023	3073272					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3074049	3075708	+	orf19.5032	3074049	3075708	1	3074049	3075708	3074225	3075343	SIM1	orf19.12499|IPF22273.1|IPF10421.1|Contig4-2686_0006|orf6.7977|SUN42|CA5232|CaO19.5032|UTH1|CaO19.12499	Protein involved in cell wall maintenance, redundant with Sun41p; described as a DNA replication regulator; produced under vaginal conditions; macrophage-downregulated gene; transcription is negatively regulated by Rim101p, Cyr1p, Ras1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3075613	3076466	-	orf19.5033	3075613	3076466	1	3076466	3075613	3076326	3075832		orf19.12500|IPF22292.1|IPF10422.1|Contig4-2686_0005|orf6.7976|CA5231|ATG12|CaO19.12500|CaO19.5033|IPF10422	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3076610	3078822	+	orf19.5034	3076610	3078822	1	3076610	3078822	3076673	3078670		orf19.12501|IPF22219.1|IPF10424.1|Contig4-2686_0004|orf6.7975|CA5230|YBP1|CaO19.12501|CaO19.5034|IPF10424	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3078610	3080586	-	orf19.5035	3078610	3080586	1	3080586	3078610	3080366	3078708		orf19.12502|IPF22251.1|IPF10425.1|Contig4-2686_0002|orf6.7974|CA5229|HPC2|CaO19.5035|CaO19.12502|IPF10425	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3080876	3083648	-	orf19.7205	3080876	3083648	1	3083648	3080876	3083072	3081048	DUR7	IPF901.1|Contig4-3075_0002|CA5331|DUR33.5eoc|DUR33|orf6.8105	Putative urea transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	3083753	3084576	+	orf19.7206	3083753	3084576	1	3083753	3084576	3083829	3084437	OCA6	IPF900.2|Contig4-3017_0006|orf6.8106|CA5332|CaO19.7206|IPF900.3f|IPF900.3	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to <i>S. cerevisiae</i> Oca6p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3084346	3086905	-	orf19.7207	3084346	3086905	1	3086905	3084346	3086875	3084440	DOA4	IPF899.1|Contig4-3017_0010|orf6.8107|CA5333|CaO19.7207	Protein not essential for viability; similar to S. cerevisiae Doa4p, which is ubiquitin hydrolase, involved in recycling ubiquitin from proteasome-bound ubiquitinated intermediates; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3087751	3088943	+	orf19.7208	3087751	3088943	2	3087751|3088101	3088032|3088943	3087751	3088943	CSK1	SMK1|IPF895.1|Contig4-3017_0013|orf6.8108|CA5334	[NOT TRANSCRIBED?] Putative mitogen-activated protein (MAP) kinase with an unknown role; null mutant produces wrinkled colonies; similar to S. cerevisiae Smk1p, which is a protein kinase required for sporulation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3089336	3089743	+	orf19.7209	3089336	3089743	1	3089336	3089743	3089336	3089743		IPF894.1|Contig4-3017_0014|orf6.8109|CA5335|CaO19.7209|IPF894	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3089974	3091090	+	orf19.7210	3089974	3091090	1	3089974	3091090	3090053	3091060		IPF893.1|Contig4-3017_0016|orf6.8110|CA5336|CaO19.7210|IPF893	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3091220	3093651	+	orf19.7212	3091220	3093651	1	3091220	3093651	3091220	3093523		IPF891.1|Contig4-3017_0017|orf6.8112|CA5337|CaO19.7212|APL1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3093485	3096946	-	orf19.7213	3093485	3096946	1	3096946	3093485	3096896	3093525		IPF889.2|Contig4-3017_0019|Contig4-3017_0020|orf6.8113|CA5338|CaO19.7213|IPF889	Putative ATP-dependent RNA helicase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3097085	3098991	+	orf19.7214	3097085	3098991	1	3097085	3098991	3097299	3098807		IPF885.1|Contig4-3017_0021|orf6.8114|CA5339|CaO19.7214|IPF885	Similar to glucan 1,3-beta-glucosidase; regulated by Nrg1p, Tup1p; possibly regulated by Tac1p; induced upon biofilm formation; induced by nitric oxide; induced during cell wall regeneration; detected by mass spec in stationary phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3099386	3104927	+	orf19.7215	3099386	3104927	1	3099386	3104927	3099412	3104868		IPF883.1|Contig4-3017_0022|orf6.8115|CA5340|CaO19.7215|IPF883	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3105046	3105567	+	orf19.7215.3	3105046	3105567	2	3105046|3105159	3105097|3105567	3105095	3105476		IPF878.1|Contig4-2519_0001|CA5341|HSP10|HSP10.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3105779	3106769	+	orf19.7216	3105779	3106769	1	3105779	3106769	3105892	3106557		IPF877.1|Contig4-2519_0002|orf6.8116|CA5342|YPT521|CaO19.7216	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3106740	3107884	-	orf19.7217	3106740	3107884	1	3107884	3106740	3107870	3106779	RPL4B	IPF875.1|Contig4-2519_0003|orf6.8117|CA5343|RPL4|CaO19.7217	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3108053	3109128	-	orf19.7218	3108053	3109128	1	3109128	3108053	3109061	3108246	RBE1	PRY2|IPF872.1|Contig4-2519_0004|orf6.8118|CA5344|CaO19.7218	Putative cell wall protein; transcription is negatively regulated by Rim101p, Efg1p, Ssn6p; alkaline downregulated; predicted signal sequence, O-glycosylation; no GPI anchor predicted [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3112465	3113343	+	ntar_278	3112465	3113343	1	3112465	3113343					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3113471	3115478	+	orf19.7219	3113471	3115478	1	3113471	3115478	3113806	3114951	FTR1	orf6.8119|IPF868.1|Contig4-3043_0004|CA5345|CaO19.7219	High-affinity iron permease (ferric citrate, ferrioxamines E or B, transferrin); required for mouse virulence, low-iron growth; iron, amphotericin B, caspofungin, ciclopirox, Hog1p regulated; complements S. cerevisiae ftr1 iron transport [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3115434	3118996	-	orf19.7221	3115434	3118996	1	3118996	3115434	3118760	3115551	SET3	IPF867.2|Contig4-3043_0006|Contig4-3043_0007|orf6.8121|CA5346|CaO19.7221|IPF867	Protein similar to S. cerevisiae Set3p, which is an NAD-dependent histone deacetylase; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3119409	3120054	+	ntar_279	3119409	3120054	1	3119409	3120054	3119583	3119759			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3119723	3120873	-	orf19.7222	3119723	3120873	1	3120873	3119723	3120326	3119961	PAM16	IPF864.1|Contig4-3043_0009|orf6.8122|CA5347|CaO19.7222|IPF864	Protein described as similar to maltase; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3121116	3123015	+	orf19.7223	3121116	3123015	1	3121116	3123015	3121139	3122893		IPF863.1|Contig4-3043_0010|orf6.8123|CA5348|CaO19.7223|IPF863	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3123185	3125088	+	orf19.7224	3123185	3125088	1	3123185	3125088	3123255	3124931		IPF861.1|Contig4-3043_0014|orf6.8124|CA5349|CaO19.7224|IPF861	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3125467	3127099	+	orf19.7225	3125467	3127099	1	3125467	3127099	3125467	3127038		IPF859.1|Contig4-3043_0016|orf6.8125|CA5350|CaO19.7225|IPF859	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	3127013	3127472	-	orf19.7227	3127013	3127472	1	3127472	3127013	3127472	3127098		IPF857.1|Contig4-3043_0017|orf6.8127|CA5351|CaO19.7227|YPI1|IPF857	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	3127776	3128918	+	orf19.7228	3127776	3128918	1	3127776	3128918	3127809	3128801		IPF856.1|Contig4-3043_0018|orf6.8128|CA5352|CaO19.7228|IPF856	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3128757	3131821	-	orf19.7229	3128757	3131821	1	3131821	3128757	3131465	3128865	IML2	IPF855.1|Contig4-3043_0019|orf6.8129|CA5353|CaO19.7229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3132252	3132784	+	ntar_280	3132252	3132784	1	3132252	3132784					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3132811	3134492	-	orf19.7231	3132811	3134492	1	3134492	3132811	3134269	3133121	FTR2	orf6.8131|IPF853.1|Contig4-3043_0021|CA5354|CaO19.7231	High-affinity iron permease; not required for mouse systemic virulence; regulated by iron level, ciclopirox olamine, amphotericin B, caspofungin; complements S. cerevisiae ftr1 iron transport defect; probably interacts with ferrous oxidase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3134618	3134771	-	ntar_281	3134618	3134771	1	3134771	3134618					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3135470	3138938	-	orf19.7232	3135470	3138938	1	3138938	3135470	3138881	3135612	IRR1	IPF850.1|Contig4-3043_0023|orf6.8132|orf6.8133|CA5355|CA5356|orf19.7233|IRR1.3f	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3139177	3140969	+	orf19.7234	3139177	3140969	1	3139177	3140969	3139214	3140899		IPF848.1|Contig4-3014_0004|orf6.8134|CA5357|CaO19.7234|RSC8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3140971	3143888	-	orf19.7235	3140971	3143888	1	3143888	3140971	3143753	3141075		IPF846.1|Contig4-3014_0006|orf6.8135|CA5358|CaO19.7235|IPF846	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3144200	3145181	-	orf19.7236	3144200	3145181	1	3145181	3144200	3145130	3144291	TIF35	IPF842.1|Contig4-3014_0009|orf6.8136|CA5359|CaO19.7236	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3145289	3146460	+	orf19.7237	3145289	3146460	1	3145289	3146460	3145510	3146313		IPF839.1|Contig4-3014_0013|orf6.8137|CA5360|CaO19.7237|IPF839	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3146294	3147677	-	orf19.7238	3146294	3147677	1	3147677	3146294	3147648	3146788	NPL3	IPF837.1|Contig4-3014_0016|orf6.8138|CA5361|CaO19.7238	Putative RNA-binding protein, ortholog of S. cerevisiae Npl3p; nuclear export is facilitated by Hmt1p; transcription is upregulated in an RHE model of oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3148005	3150406	-	orf19.7239	3148005	3150406	2	3150406|3150054	3150303|3148005	3150328	3148098		IPF836.1|Contig4-3014_0017|orf6.8139|CA5362|IPF836.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=F]
Ca21chr1	3151059	3154910	-	orf19.7242	3151059	3154910	1	3154910	3151059	3154898	3151128	NCR1	IPF829.1|Contig4-3014_0027|orf6.8142|CA5363|CaO19.7242	Transcription is regulated by Nrg1p and Mig1p; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3155133	3156307	+	orf19.7243	3155133	3156307	1	3155133	3156307	3155237	3156250		IPF825.1|Contig4-3014_0028|orf6.8143|CA5364|CaO19.7243|DCD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3156186	3157085	-	orf19.7244	3156186	3157085	1	3157085	3156186	3156949	3156254		IPF824.1|Contig4-3014_0029|orf6.8144|CA5365|FAH1|CaO19.7244|IPF824	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3157175	3158582	+	orf19.7245	3157175	3158582	1	3157175	3158582	3157230	3158501		IPF823.1|Contig4-3014_0031|orf6.8145|CA5366|CaO19.7245|IPF823	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3158572	3160835	-	orf19.7247	3158572	3160835	1	3160835	3158572	3160657	3158672	RIM101	orf6.8147|HRM101|PRR2|IPF822.2|Contig4-3014_0032|CA5367|CaO19.7247	Transcription factor involved in alkaline pH response; required for alkaline-induced hyphal growth; role in virulence in mouse systemic infection; activated by C-terminal proteolytic cleavage; mediates both positive and negative regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3161228	3161695	+	ntar_282	3161228	3161695	1	3161228	3161695					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3162261	3162851	+	orf19.7250	3162261	3162851	1	3162261	3162851	3162285	3162728		IPF5257.1|Contig4-2986_0001|orf6.8150|CA5368|YPI2|CaO19.7250|IPF5257	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3162739	3164447	-	orf19.7251	3162739	3164447	1	3164447	3162739	3164394	3162919	WSC4	IPF5256.1|Contig4-2986_0002|orf6.8151|CA5369|CaO19.7251	Transcription is specific to white cell type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3164929	3165252	+	orf19.7252	3164929	3165252	1	3164929	3165252	3164929	3165252		IPF27358.1|orf6.8152|CaO19.7252	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3165574	3167505	-	orf19.7254	3165574	3167505	1	3167505	3165574	3167470	3165671		IPF5248.1|Contig4-2986_0003|Contig4-2986_0005|orf6.8154|CA5370|CaO19.7254|IPF5248	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3167557	3167950	+	orf19.7255	3167557	3167950	1	3167557	3167950	3167578	3167799	RPC10	IPF5246.1|Contig4-2986_0006|orf6.8155|CA5371|CaO19.7255	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3167785	3169721	-	orf19.7257	3167785	3169721	1	3169721	3167785	3169721	3167811		IPF5245.2|Contig4-2986_0007|orf6.8157|CA5372|CaO19.7257|MLH3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	3169692	3171106	+	orf19.7258	3169692	3171106	1	3169692	3171106	3170037	3171008	DDI1	IPF5241.2|Contig4-2986_0012|orf6.8158|CA5374|CaO19.7258	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3170951	3171784	-	orf19.7260	3170951	3171784	1	3171784	3170951	3171784	3171005		IPF5239.2|Contig4-2986_0013|orf6.8160|CA5375|CaO19.7260|IPF5239	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3171793	3173200	-	orf19.7261	3171793	3173200	1	3173200	3171793	3173195	3171846		IPF5237.2|Contig4-2986_0014|orf6.8161|CA5376|CaO19.7261|GDI1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3173216	3174616	-	orf19.7263	3173216	3174616	1	3174616	3173216	3174603	3173251		IPF5234.2|Contig4-2986_0015|Contig4-2986_0016|orf6.8163|CA5377|CaO19.7263|IPF5234	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3174674	3175633	+	orf19.7264	3174674	3175633	1	3174674	3175633	3174695	3175633		IPF5231.1|Contig4-2986_0017|orf6.8164|CA5378|CaO19.7264|RPN11|MPR1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3175688	3176416	+	orf19.7265	3175688	3176416	1	3175688	3176416	3175688	3176416		IPF5228.1|Contig4-2986_0018|orf6.8165|CA5379|UBP10|CaO19.7265|IPF5228.5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3176504	3176857	+	orf19.7266	3176504	3176857	1	3176504	3176857	3176504	3176818		IPF5225.1|Contig4-2986_0021|orf6.8166|CaO19.7266	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3176747	3177547	-	orf19.7267	3176747	3177547	1	3177547	3176747	3177540	3176785		IPF5224.1|Contig4-2986_0022|orf6.8167|CA5380|CaO19.7267|IPF5224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3177571	3178435	-	orf19.7269	3177571	3178435	1	3178435	3177571	3178260	3177598		IPF5222.1|Contig4-2986_0024|orf6.8169|CA5381|CaO19.7269|PAA11|IPF5222	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3178674	3178901	-	ntar_283	3178674	3178901	1	3178901	3178674					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3178762	3180945	+	orf19.7270	3178762	3180945	1	3178762	3180945	3179728	3180789		IPF5217.1|Contig4-2986_0029|orf6.8170|CA5382|CaO19.7270|IPF5217	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3180927	3181775	-	ntar_284	3180927	3181775	1	3181775	3180927	3181480	3181295			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3180978	3181907	+	orf19.7271	3180978	3181907	1	3180978	3181907	3181309	3181629		IPF5214.1|Contig4-2986_0030|orf6.8171|CaO19.7271	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3182792	3183124	-	orf19.7272	3182792	3183124	1	3183124	3182792	3183124	3182792		IPF13996.1|Contig4-2986_0033|orf6.8172|CaO19.7272	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3183339	3184316	-	orf19.7274	3183339	3184316	1	3184316	3183339	3184316	3183339		IPF14001.1|Contig4-2250_0004|Contig4-2250_0005|Contig4-2986_0035|orf6.8173|orf6.8174|CA5383|CA5384|orf19.7273|Zorro1b.5f	Predicted ORF in retrotransposon Zorro2 with similarity to retroviral reverse transcriptase proteins [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3183482	3183769	+	ntar_285	3183482	3183769	1	3183482	3183769					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3184588	3185304	-	orf19.7275	3184588	3185304	1	3185304	3184588	3185304	3184588	FGR24	IPF14003.1|Contig4-2250_0008|Contig4-2250_0010|orf6.8175|orf6.8177|CA5385|Zorro2b.3f	Protein encoded in retrotransposon Zorro2 with similarity to retroviral endonuclease-reverse transcriptase proteins; lacks an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3185382	3185909	-	orf19.7277	3185382	3185909	1	3185909	3185382	3185909	3185382		orf6.8177|CA5386|CaO19.7277|Zorro2b.5f|IPF14005.1	Predicted ORF in retrotransposon Zorro2 with similarity to zinc finger-containing retroviral nucleocapsid proteins; un-merged from orf19.7275 in a revision of Assembly 21 based on comparative genome analysis and new sequence data [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3186501	3187101	-	orf19.7276.1	3186501	3187101	1	3187101	3186501	3186870	3186670	TLO4	IPF14006.2|CA5387|CTA213.3|CTA24.3	Member of a family of telomere-proximal genes of unknown function; transcription is upregulated in an RHE model of oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	3187867	3188547	-	orf19.7278	3187867	3188547	1	3188547	3187867	3188133	3187867			 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	83	854	-	ntar_286	83	854	1	854	83	652	530			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	4248	4778	+	orf19.1925	4248	4778	1	4248	4778	4248	4778	TLO5	orf19.9481|IPF17379.3|IPF14847.1|orf6.1954|orf6.5530|CA0809|TLO5b|CTA222|CaO19.9481|CTA212|CaO19.1925	Member of a family of telomere-proximal genes of unknown function; may be spliced in vivo [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	5265	5583	-	ntar_287	5265	5583	1	5583	5265					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	5655	7363	+	orf19.1923	5655	7363	1	5655	7363	5665	7335	RRN3	orf19.9479|IPF19884.2|IPF19708.1|orf6.1957|CA0810|CaO19.1923|CaO19.9479	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced, flucytosine repressed; downregulated in core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	7396	7467	-	tv(cac)1	7396	7467	1	7467	7396				tV(CAC)1.2	tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	7510	8043	-	orf19.1920	7510	8043	1	8043	7510	8043	7510		orf19.9476|IPF25405.1|IPF17625.2|orf6.1959|CA0811|CIS301|CaO19.1920|CaO19.9476|IPF17625	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	8106	9289	-	orf19.1917	8106	9289	1	9289	8106	9289	8144		orf19.9473|IPF25402.1|IPF16243.2|orf6.1962|CA0812|CaO19.1917|AES6|CaO19.9473|IPF3348	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	9319	11063	-	orf19.1915	9319	11063	1	11063	9319	11063	9360	MPP10	orf19.9471|IPF19846.2|IPF16234.2|orf6.1964|orf6.803|CA0813|CaO19.1915	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	11100	12537	-	orf19.1914	11100	12537	1	12537	11100	12443	11100	FAV3	orf19.9470|IPF15437.1|IPF16233.1|Contig4-2107_0001|orf6.1965|orf6.802|CA0814|AMAN6|CaO19.1914|IPF16233	Induced by mating factor in MTLa/MTLa opaque cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	12626	13348	+	orf19.1913	12626	13348	1	12626	13348	12627	13253		orf19.9469|IPF15439.1|IPF16231.2|Contig4-2107_0003|orf6.1966|orf6.801|CA0815|CaO19.1913|IPF16231	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	13211	14499	-	orf19.1911	13211	14499	1	14499	13211	14415	13261	PGA52	orf19.9467|IPF15442.1|IPF14463.2|Contig4-2107_0004|Contig4-2832_0018|orf6.1967|orf6.799|CA0188|CaO19.1911|IPF15442	GPI-anchored cell surface protein of unknown function; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	14811	15573	+	orf19.1910	14811	15573	1	14811	15573	14823	15446		orf19.9466|IPF15444.2|IPF14465.1|Contig4-2832_0017|orf6.1269|orf6.798|CA0389|CaO19.1910|IPF14465	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	15434	17652	-	orf19.1907	15434	17652	1	17652	15434	17610	15457	EMC9	orf19.9463|IPF14468|IPF25401.1|IPF14468.2|Contig4-2832_0014|Contig4-2832_0015|orf6.1266|orf6.797|CA0388|CaO19.1907	Protein not essential for viability, induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	17572	17955	+	ntar_288	17572	17955	1	17572	17955	17572	17775			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	18818	19148	+	orf19.1906	18818	19148	1	18818	19148	18818	19147		orf19.9462|IPF25415.1|IPF29267.1|orf6.1265|CaO19.1906|CaO19.9462	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	19400	21344	+	orf19.2119	19400	21344	1	19400	21344	19427	21205	NDT80	orf19.9667|IPF25251.1|IPF10318.1|Contig4-2832_0009|orf6.4742|CA2727|NDT801|CaO19.2119|CaO19.9667|IPF10318	Activator of CDR1 induction by antifungal drugs; required for wild-type drug resistance; transcriptionally induced upon antifungal drug treatment; similar to S. cerevisiae Ndt80p, which is a meiosis-specific transcriptional regulator [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	21516	22809	+	orf19.2117	21516	22809	1	21516	22809	21541	22767	LEU5	orf19.9665|IPF10322.1|IPF29217.1|Contig4-2832_0008|orf6.4744|CA2728|CaO19.2117|CaO19.9665|IPF10322	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	22631	23437	-	orf19.2116	22631	23437	1	23437	22631	23431	22793	NAT2	orf19.9664|IPF10323.1|IPF19438.2|Contig4-2832_0007|orf6.118|orf6.4745|CA2729|CaO19.2116	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	23461	24820	-	orf19.2115	23461	24820	1	24820	23461	24816	23512		orf19.9663|IPF10325.2|IPF19439.2|Contig4-2832_0006|orf6.117|orf6.4746|CA2730|CaO19.2115|IPF10325	Putative molybdopterin-converting factor; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	24867	25834	-	orf19.2114	24867	25834	1	25834	24867	25825	24914		orf19.9662|IPF25286.1|IPF10326.2|Contig4-2832_0004|orf6.4747|CA2731|URO99|CaO19.9662|CaO19.2114|URIC	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	25989	27473	-	orf19.2113	25989	27473	1	27473	25989	27426	26038		orf19.9661|IPF25263.1|IPF10327.2|Contig4-2832_0003|orf6.4748|CA2732|CaO19.2113|PEX30|CaO19.9661|IPF10327	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	27544	28398	+	orf19.2112	27544	28398	1	27544	28398	27586	28398		orf19.9660|IPF18423.2|IPF10329.2|Contig4-2832_0002|orf6.4749|CA2733|CaO19.9660|PRP18|CaO19.2112	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	28536	28967	+	orf19.2111.2	28536	28967	1	28536	28967	28566	28802	RPL38	IPF25223.1|IPF10330.2|CA2734	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	28863	30079	-	orf19.2111	28863	30079	1	30079	28863	30051	28906		orf19.9659|IPF25270.1|IPF19765.1|orf6.4750|CA2735|CaO19.9659|TFG2|CaO19.2111	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	30124	32126	+	orf19.2110	30124	32126	1	30124	32126	30175	31563		orf19.9658|IPF25264.1|IPF15421.2|Contig4-1579_0002|orf6.4751|CA2736|CaO19.9658|ATE1|CaO19.2110	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	31508	32634	-	orf19.2108	31508	32634	1	32634	31508	32587	31637	SOD6	orf19.9656|PGA9|IPF25284.1|IPF15423.2|SOD33|Contig4-1579_0007|Contig4-1856_0002|orf6.4753|CA2737|CaO19.9656|CaO19.2108|IPF15423	Copper- and zinc-containing superoxide dismutase; expression regulated during planktonic growth; member of a gene family that includes SOD1, SOD4, SOD5, and SOD6; gene may contain an intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	33011	33800	+	orf19.2107.1	33011	33800	1	33011	33800	33351	33620	STF2	IPF25220.1|IPF15425.2|Contig4-1856_0004|CA2738	Protein involved in ATP biosynthesis; decreased expression in hyphae compared to yeast-form cells; downregulated by Efg1p; transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	33610	34884	-	orf19.2107	33610	34884	2	34884|34727	34784|33610	34856	33682	MUQ1	orf19.9655|IPF25279.1|IPF10634.2|Contig4-1856_0005|orf6.4754|CA2739|CaO19.2107|CaO19.9655	Protein described as choline phosphate cytidylyltransferase/phosphoethanolamine cytidylyltransferase; decreased expression in hyphae compared to yeast-form cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	34925	35744	-	orf19.2106	34925	35744	1	35744	34925	35686	34979		orf19.9654|IPF25293.1|IPF10633.1|Contig4-2610_0003|orf6.4755|CA2740|CaO19.9654|CaO19.2106|IPF10633	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	35757	36429	-	orf19.2105	35757	36429	1	36429	35757	36407	35757		orf19.9653|IPF25303.1|IPF10632.1|Contig4-2610_0004|orf6.4756|CA2741|CaO19.9653|CWC24|CaO19.2105|IPF10632	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	36486	37334	+	orf19.2104	36486	37334	1	36486	37334	36551	37180		orf19.9652|IPF18422.2|IPF10631.1|Contig4-2610_0005|orf6.4757|CA2742|JAC1|CaO19.2104|CaO19.9652	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	37152	38400	-	orf19.2102	37152	38400	1	38400	37152	38158	37277	CKB1	orf19.9650|CKB21|IPF25288.1|IPF10630.1|Contig4-2610_0007|orf6.4759|CA2743|CaO19.2102|CaO19.9650	Regulatory subunit of protein kinase CK2 (casein kinase II), beta subunit [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	37603	38049	+	orf19.2103	37603	38049	1	37603	38049	37603	38049			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	38505	39372	+	orf19.2101	38505	39372	1	38505	39372	38528	39127		orf19.9649|IPF25301.1|IPF10626.1|Contig4-2610_0009|orf6.4760|CA2744|CaO19.2101|CaO19.9649|IPF10626	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	38912	41976	-	orf19.2099	38912	41976	2	41976|41842	41909|38912	41945	39156		orf19.9647|IPF10625.2|IPF29209.1|Contig4-2610_0010|orf6.4762|CA2745|HIR1|CaO19.2099|CaO19.9647|HIR1.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	42026	43631	-	orf19.2098	42026	43631	1	43631	42026	43586	42111	ARO8	orf19.9645|IPF10616.3|IPF1147.2|Contig4-2564_0008|orf6.4764|orf6.7457|CA4804|CaO19.2098	Aromatic transaminase of the Ehrlich fusel oil pathway of aromatic alcohol biosynthesis; Rim101p-independent pH-regulation (alkaline induced); protein abundance is affected by URA3 expression in the CAI-4 strain background; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	44195	47584	+	orf19.2097	44195	47584	1	44195	47584	44288	47542		orf19.9644|IPF25340.1|IPF1153.2|Contig4-2564_0004|Contig4-2564_0005|Contig4-2564_0006|orf6.7458|CA4805|RAD5|CaO19.9644|CaO19.2097	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	47572	49832	-	orf19.2095	47572	49832	1	49832	47572	49686	47587		orf19.9642|IPF25234.1|IPF1155.2|Contig4-2564_0001|orf6.7460|CA4806|CaO19.9642|CaO19.2095|IPF1155	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	50021	50281	-	ntar_289	50021	50281	1	50281	50021	50281	50066			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	50241	53330	+	orf19.2094	50241	53330	1	50241	53330	50262	53276	PDR6	orf19.9641|IPF25339.1|IPF1158.2|Contig4-2971_0021|Contig4-2971_0023|Contig4-2971_0025|Contig4-2971_0026|Contig4-2971_0027|orf6.7461|CA4807|KAP122|CaO19.9641|CaO19.2094	Transcription is regulated by Nrg1p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	53264	55253	-	orf19.2093	53264	55253	1	55253	53264	55237	53363	RFA1	orf19.9640|IPF25239.1|IPF1160.1|Contig4-2971_0020|orf6.7462|CA4808|CaO19.9640|CaO19.2093	Protein described as DNA replication factor A; RNA abundance regulated by cell cycle, tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	55355	56780	-	orf19.2092	55355	56780	1	56780	55355	56710	55496		orf19.9639|IPF25274.1|IPF1162.1|Contig4-2971_0019|orf6.7463|CA4809|STR3|CaO19.2092|CaO19.9639|IPF1162	Predicted ORF in Assemblies 19, 20 and 21; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	56885	57899	-	orf19.2091	56885	57899	1	57899	56885	57810	57079		orf19.9638|IPF25295.1|IPF1164.2|Contig4-2971_0016|orf6.7464|CA4810|CaO19.2091|CaO19.9638|IPF1164	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	59037	62998	-	orf19.2090	59037	62998	1	62998	59037	62936	59145		orf19.9637|IPF25327.1|IPF1169.2|Contig4-2971_0013|orf6.7465|CA4811|CaO19.9637|ECM16|CaO19.2090	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	63170	64283	+	orf19.2089	63170	64283	2	63170|63360	63284|64283	63257	64177		orf19.9636|IPF25290.1|IPF1171.1|Contig4-2971_0010|orf6.7466|CA4812|CaO19.9636|NYV1|CaO19.2089|IPF1171.3f|IPF1171	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	64008	65038	-	orf19.2088	64008	65038	1	65038	64008	64994	64209		orf19.9635|IPF25294.1|IPF1174.1|Contig4-2971_0009|orf6.7467|CA4813|CaO19.2088|DPB4|CaO19.9635	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	65148	66314	+	orf19.2087	65148	66314	1	65148	66314	65234	66292	SAS2	orf19.9634|IPF25278.1|IPF1176.1|Contig4-2971_0008|orf6.7468|CA4814|CaO19.9634|CaO19.2087	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	66243	68433	-	orf19.2084	66243	68433	1	68433	66243	68137	66344	CDH1	orf19.9631|IPF25246.1|IPF20022.1|Contig4-2971_0006|orf6.7471|CA4815|CaO19.2084|CaO19.9631	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	69105	70412	+	orf19.2082	69105	70412	1	69105	70412	69105	70412	SAP30	orf19.9629|IPF25266.1|IPF1183.2|Contig4-2971_0003|orf6.7473|CA4816|BAR1|CaO19.9629|CaO19.2082|IPF1183	Aspartic-type endopeptidase involved in degradation of alpha pheromone; functional equivalent of S. cerevisiae Bar1p; specific to a-cells; transcription is induced in response to alpha pheromone [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	70624	74591	+	orf19.2081	70624	74591	1	70624	74591	70672	74457		orf19.9628|IPF25328.1|IPF1191.2|orf6.7474|CA4817|POM152|CaO19.2081|CaO19.9628	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	74497	75167	-	orf19.2079	74497	75167	1	75167	74497	74922	74578	PHHB	orf19.9626|IPF25331.1|IPF1193.1|Contig4-3072_0032|orf6.7476|CA4818|CaO19.9626|CaO19.2079|IPF1193	Transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	75534	77752	+	orf19.2078	75534	77752	1	75534	77752	75598	77607		orf19.9625|IPF25237.1|IPF1194.2|Contig4-3072_0031|orf6.7477|CA4819|APM2|CaO19.2078|CaO19.9625|IPF1194	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	78045	80744	+	orf19.2077	78045	80744	1	78045	80744	78128	80632		ZCF9|orf19.9624|IPF25229.1|IPF1196.2|Contig4-3072_0028|orf6.7478|CA4820|CaO19.9624|CaO19.2077|IPF1196	Putative transcription factor with zinc cluster DNA-binding motif; hypersensitive to toxic ergosterol analog ECC69 and/or ECC1384 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	80810	82010	+	orf19.2076	80810	82010	1	80810	82010	80950	81954		orf19.9623|IPF25282.1|IPF1197.1|Contig4-3072_0026|orf6.7479|CA4821|CaO19.9623|CaO19.2076|IPF1197	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	82648	84294	+	orf19.2075	82648	84294	1	82648	84294	82837	84192	DFG5	orf19.9622|IPF25260.1|IPF1199.1|Contig4-3072_0022|orf6.7480|CA4822|CaO19.2075|CaO19.9622	N-linked mannoprotein of cell wall and membrane; possible signal transducer; role in hyphal growth and HWP1 induction in alkaline pH; GPI modification predicted; dfg5 dcw1 double mutant is inviable; caspofungin-induced, fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	84527	84835	+	orf19.2074	84527	84835	1	84527	84835	84527	84835		orf19.9621|IPF25336.1|IPF29235.1|orf6.7481|CaO19.2074|CaO19.9621	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	84814	86806	+	orf19.2073	84814	86806	1	84814	86806	84814	86646		orf19.9620|IPF25244.1|IPF1203.2|Contig4-3072_0021|orf6.7482|CA4823|CaO19.2073|MTE2|CaO19.9620|ERC3	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	87382	87528	-	ntar_290	87382	87528	1	87528	87382					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	87820	89457	-	ntar_291	87820	89457	1	89457	87820	88514	88335			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	87933	89642	+	orf19.2072	87933	89642	1	87933	89642	87933	89642		orf19.9619|IPF25249.1|IPF1204.2|Contig4-3072_0019|orf6.7483|CA4824|HNM2|CaO19.2072|HNM1|CaO19.9619	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	89866	90342	+	orf19.2071	89866	90342	1	89866	90342	89866	90342		orf19.9618|IPF25310.1|IPF1205.2|Contig4-3072_0017|orf6.7484|CA4825|CaO19.9618|CaO19.2071|IPF1205	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	90606	92568	+	orf19.2070	90606	92568	2	90606|90759	90685|92568	90652	92431		orf19.9617|IPF25250.1|IPF1206.2|Contig4-3072_0015|orf6.7485|CA4826|CaO19.2070|CaO19.9617|IPF1206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	92489	94278	-	orf19.2069	92489	94278	1	94278	92489	94103	92559	SMF3	orf19.9616|IPF25259.1|IPF1207.1|SMF2|Contig4-3072_0013|Contig4-3072_0014|orf6.7486|CA4827|CaO19.9616|CaO19.2069	Protein described as vacuolar iron transporter; alkaline upregulated; caspofungin repressed; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	95078	96770	+	orf19.2068	95078	96770	1	95078	96770	95127	96707		orf19.9615|IPF25256.1|IPF1209.2|Contig4-3072_0010|orf6.7487|CA4828|CaO19.9615|CaO19.2068|IPF1209	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	96451	97580	-	orf19.2067	96451	97580	1	97580	96451	97528	96815		orf19.9614|IPF25292.1|IPF1210.1|Contig4-3072_0008|orf6.7488|CA4829|CaO19.2067|NFU1|CaO19.9614|IPF1210	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	97671	98414	-	orf19.2066.1	97671	98414	2	98414|98093	98351|97671	98414	97963		CA4830|ATP8|ATP8.exon2|IPF1211.1	Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	98524	99589	-	orf19.2066	98524	99589	1	99589	98524	99589	98618		orf19.9613|IPF25283.1|IPF1212.1|Contig4-3072_0006|orf6.7489|CA4831|CaO19.9613|CaO19.2066|IPF1212	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	99694	100768	-	orf19.2065	99694	100768	1	100768	99694	100722	99694		orf19.9612|IPF25281.1|IPF1213.1|Contig4-3072_0005|orf6.7490|CA4832|CaO19.2065|DAL2|CaO19.9612	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	101403	104787	+	orf19.2064	101403	104787	1	101403	104787	101403	104726		orf19.9611|IPF25337.1|IPF1216.2|Contig4-3072_0003|Contig4-3072_0004|CA4833|CaO19.9611|CaO19.2064|IPF1216|orf6.7491	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	104710	104929	-	ntar_292	104710	104929	1	104929	104710					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	105012	108607	+	orf19.2063	105012	108607	1	105012	108607	105012	108482		orf19.9610|IPF25329.1|IPF1217.2|Contig4-3065_0035|orf6.7492|CA4834|CaO19.9610|CaO19.2063|IPF1217	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	108613	109734	-	orf19.2062	108613	109734	1	109734	108613	109376	108678	SOD4	orf19.9609|PGA2|IPF25297.1|IPF1218.1|Contig4-3065_0001|orf6.7493|CA4835|SOD32|CaO19.9609|CaO19.2062|IPF1218	Copper- and zinc-containing superoxide dismutase; role in response to host innate immune ROS; regulated on white-opaque switching; ciclopirox olamine induced; caspofungin repressed; member of family that includes SOD1, SOD4, SOD5, and SOD6 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	109843	110009	-	ntar_293	109843	110009	1	110009	109843					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	110767	111087	-	orf19.2061	110767	111087	1	111087	110767	111087	110767		orf19.9608|IPF25332.1|IPF29231.1|orf6.7494|CaO19.9608|CaO19.2061	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	111141	112295	-	orf19.2060	111141	112295	1	112295	111141	112012	111326	SOD5	orf19.9607|PGA3|orf6.7495|IPF1222|IPF25296.1|IPF1222.2|Contig4-3065_0005|CA4836|CaO19.2060|SOD31|CaO19.9607	Copper- and zinc-containing superoxide dismutase; protective role against oxidative stress; induced by neutrophil contact, hyphal growth, caspofungin, osmotic or oxidative stress; member of a gene family including SOD1, SOD4, SOD5, and SOD6 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	114738	116177	+	orf19.2059	114738	116177	1	114738	116177	115265	116176		orf19.9606|IPF25287.1|IPF1228.2|Contig4-3065_0008|orf6.7496|CA4837|CaO19.2059|EEP2|CaO19.9606|IPF1228	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	116667	119759	+	orf19.2057	116667	119759	1	116667	119759	117048	119588		orf19.9604|IPF25224.1|IPF1231.2|Contig4-3065_0009|orf6.7498|CA4838|CaO19.9604|YTA12|CaO19.2057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	119781	121280	+	orf19.2055	119781	121280	1	119781	121280	119825	121174	NPL6	orf19.9602|IPF25269.1|IPF1234.2|Contig4-3065_0011|orf6.7500|CA4839|CaO19.9602|CaO19.2055	Putative nuclear protein localization factor; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	121116	122933	-	orf19.2054	121116	122933	1	122933	121116	122850	121294	FGR15	orf19.9601|IPF25258.1|IPF1235.1|Contig4-3065_0012|orf6.7501|CAS2|CA4840|CaO19.2054|CaO19.9601|IPF1235	Putative transcription factor with zinc finger DNA-binding motif; lacks an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; caspofungin induced; mutation causes marginal increase in caspofungin sensitivity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	123612	126920	-	orf19.2051	123612	126920	2	126920|126569	126783|123612	126818	123717		orf19.9599|IPF25219.1|IPF29223.1|IPF7466.3|Contig4-3065_0015|orf6.431|orf6.5990|CA3659|orf19.2053|IPF7466|CA0077|IPF1239|IPF1239.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=D]
Ca21chr2	127053	128867	-	orf19.2050	127053	128867	1	128867	127053	128755	127133		orf19.9598|IPF25254.1|IPF7463.2|Contig4-3065_0016|Contig4-3065_0018|orf6.5989|CA3658|TGL1|CaO19.2050|CaO19.9598	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	129828	131079	+	orf19.2049	129828	131079	1	129828	131079	130098	130952		orf19.9597|IPF25289.1|IPF7459.1|Contig4-3065_0021|orf6.5988|CA3657|CaO19.2049|CaO19.9597|IPF7459	Predicted ORF in Assemblies 19, 20 and 21; heterozygous null mutant displays sensitivity to virgineone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	130886	131602	-	orf19.2048	130886	131602	1	131602	130886	131488	131123		orf19.9596|orf6.5987|IPF25325.1|IPF7458.1|Contig4-3065_0023|CaO19.2048|CaO19.9596	Transcription is positively regulated by Sfu1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	132108	132996	+	orf19.2047	132108	132996	1	132108	132996	132181	132807		orf19.9595|IPF25302.1|IPF7456.1|Contig4-3065_0024|orf6.5986|CA3656|CaO19.9595|CaO19.2047|IPF7456	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	133145	134542	+	orf19.2046	133145	134542	1	133145	134542	133198	134379	POT1-2	orf19.9594|IPF25275.1|IPF7453.1|Contig4-3065_0025|orf6.5985|CA3655|CaO19.9594|POT98|CaO19.2046|POT13	Putative peroxisomal 3-ketoacyl CoA thiolase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	134429	135817	-	orf19.2045	134429	135817	1	135817	134429	135647	134610		orf19.9593|IPF25276.1|IPF7452.1|Contig4-3065_0027|orf6.5984|CA3654|CaO19.9593|CaO19.2045|IPF7452	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	136057	137714	-	orf19.2044	136057	137714	1	137714	136057	137649	136192	PGA27	orf19.9592|IPF25252.1|IPF7451.2|Contig4-3065_0030|orf6.5983|CA3653|CaO19.9592|CaO19.2044|IPF7451	Putative GPI-anchored protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	137787	138841	-	orf19.2043	137787	138841	1	138841	137787	138754	137852		orf19.9591|IPF25285.1|IPF7450.2|Contig4-3065_0032|orf6.5982|CA3652|CaO19.9591|CaO19.2043|NBP35	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	138800	140513	+	orf19.2042	138800	140513	1	138800	140513	138814	140403		orf19.9590|IPF25257.1|IPF7447.2|Contig4-3065_0033|orf6.5981|CA3651|CaO19.9590|MSS1|CaO19.2042	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	140374	142541	-	orf19.2041	140374	142541	1	142541	140374	142396	140486		orf19.9589|IPF25241.1|IPF4134.2|Contig4-2863_0027|orf6.5980|CA3650|RSC4|CaO19.2041|CaO19.9589|IPF4134	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	142571	144665	+	orf19.2040	142571	144665	1	142571	144665	142787	144562		orf19.9588|IPF25245.1|IPF4132.2|Contig4-2863_0024|orf6.5979|CA3649|TAH18|CaO19.9588|CaO19.2040|IPF4132	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	144759	146262	+	orf19.2039	144759	146262	1	144759	146262	144775	146115	MSF1	orf19.9587|IPF25267.1|IPF4131.2|Contig4-2863_0020|Contig4-2863_0021|orf6.5978|CA3648|CaO19.2039|CaO19.9587	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	146097	147513	-	orf19.2038	146097	147513	1	147513	146097	147409	146153		orf19.9586|IPF25271.1|IPF4129.1|Contig4-2863_0018|Contig4-2863_0019|orf6.5977|CA3647|CaO19.9586|CaO19.2038|IPF4129	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	148469	149248	+	orf19.2037	148469	149248	1	148469	149248	148538	148996		orf19.9585|IPF25312.1|IPF4128.1|orf6.5976|CA3646|CaO19.2037|CaO19.9585|IPF4128	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	148490	149220	-	ntar_294	148490	149220	1	149220	148490					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	149554	150713	+	orf19.2036	149554	150713	1	149554	150713	149634	150713		orf19.9584|IPF25277.1|IPF4127.2|Contig4-2863_0014|orf6.5975|CA3645|CaO19.9584|DDD1|CaO19.2036|IPF4127	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	150855	151811	+	orf19.2035	150855	151811	1	150855	151811	150855	151811		orf19.9583|IPF25280.1|IPF4126.2|Contig4-2863_0013|orf6.5974|CA3644|CaO19.2035|CaO19.9583|IPF4126	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	152021	152710	+	orf19.2034	152021	152710	1	152021	152710	152021	152710		orf19.9582|IPF25300.1|IPF4124.2|Contig4-2863_0011|orf6.5973|CA3643|CaO19.2034|CaO19.9582|IPF4124	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	152920	153609	+	orf19.2033	152920	153609	1	152920	153609	152920	153609	PGA19	orf19.9581|IPF4123|IPF25299.1|IPF4123.2|Contig4-2863_0009|orf6.5972|CA3642|CaO19.9581|CaO19.2033	[NOT TRANSCRIBED?] Putative GPI-anchored protein; not essential for viability; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	153706	155386	-	orf19.2031	153706	155386	2	155386|155150	155222|153706	155269	154527	VPS24	orf19.9579|IPF19223.2|IPF4120.2|Contig4-2863_0003|orf6.595|orf6.5970|CA3640|CaO19.2031	Protein similar to S. cerevisiae Vps24p, which is a member of the ESCRT III protein sorting complex; downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	153805	154473	+	orf19.2032	153805	154473	1	153805	154473	153805	154473		orf19.9580|IPF25298.1|IPF4122.2|Contig4-2863_0008|orf6.5971|CA3641|CaO19.2032|CaO19.9580|IPF4122	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	155665	156671	+	orf19.2030	155665	156671	1	155665	156671	155824	156297		orf19.9578|IPF4119.2|IPF29221.1|Contig4-2863_0002|orf6.594|orf6.5969|CA0125|CaO19.2030|IPF4119	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	156208	157488	-	orf19.2029	156208	157488	1	157488	156208	157441	156353	RFC5	orf19.9577|IPF4118.2|IPF29218.1|Contig4-2863_0001|orf6.593|orf6.5968|CA0124|CaO19.2029	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	157550	157811	+	ntar_295	157550	157811	1	157550	157811	157655	157795			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	157654	158482	-	orf19.2028	157654	158482	1	158482	157654	158430	157873	MXR1	orf19.9576|IPF4117.2|IPF19262.2|Contig4-2097_0002|orf6.473|orf6.592|CA0123|CaO19.2028	Protein described as a methionine sulfoxide reductase; flucytosine induced; Plc1p-regulated; upregulated in the presence of human neutrophils; macrophage regulated (gene induced, protein decreased); possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	158583	161074	-	orf19.2026	158583	161074	1	161074	158583	160795	158693		orf19.9575|IPF19018.2|IPF4114.2|Contig4-2097_0005|orf6.1213|orf6.471|orf6.591|CA0090|CaO19.2026|UBP9|UBP13	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	161361	161705	+	orf19.2025	161361	161705	1	161361	161705	161361	161705		IPF29232.1|orf6.470|CaO19.2025	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	161906	162762	-	ntar_296	161906	162762	1	162762	161906	162735	162592			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	163117	163552	+	orf19.2024	163117	163552	1	163117	163552	163117	163476		IPF25333.1|IPF29228.1|orf6.2375|orf6.1212	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	164442	166287	+	orf19.2023	164442	166287	1	164442	166287	164467	166107	HGT7	orf19.9572|HXT3|HXT62|IPF3282|HXT61|IPF17561.3|IPF4109.2|Contig4-2603_0002|orf6.1210|orf6.2376|orf6.2378|CA1067|CaO19.2023	Putative glucose transporter, major facilitator superfamily; glucose-, fluconazole-, Snf3p-induced, expressed at high glucose; upregulated in biofilm; C. albicans glucose transporter family comprises 20 members; 12 TM regions predicted [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	167154	169147	+	orf19.2021	167154	169147	1	167154	169147	167291	168943	HGT8	orf19.9571|HGT11|HXT3|HXT7|HXT4|IPF18773.1|IPF18774.1|orf6.187|orf6.2377|orf6.2378|HXT5|CA1069|CA1068|orf19.2022|HXT5.3f	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; gene has intron; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	170134	171951	+	orf19.2020	170134	171951	1	170134	171951	170217	171869	HGT6	orf19.9570|HXT4|HXT61|IPF25253.1|IPF4104.2|Contig4-2305_0001|orf6.2379|CA1070|CaO19.2020|HXT63|CaO19.9570	Putative glucose transporter of major facilitator superfamily; 20 members of C. albicans glucose transporter family; 12 probable membrane-spanning segments; core stress response, fluconazole-induced; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	172312	173077	+	orf19.2019	172312	173077	1	172312	173077	172345	172986		orf19.9569|IPF4102.2|IPF19890.2|Contig4-2305_0004|orf6.2113|orf6.2380|CA0910|MRPL16|CaO19.2019	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	173109	173561	+	orf19.2018.1	173109	173561	2	173109|173409	173350|173561	173155	173527			Predicted ORF in Assembly 20 and 21; gene has intron; similar to human BLOC1S2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	173355	174486	-	orf19.2018	173355	174486	1	174486	173355	174401	173952		orf19.9568|IPF14814.2|IPF18772.2|Contig4-1775_0003|orf6.2114|orf6.2381|CA0911|CaO19.2018|JJJ3|IPF14814	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	173688	173945	+	orf19.2018.2	173688	173945	1	173688	173945	173688	173945			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	174461	175850	+	orf19.2017	174461	175850	1	174461	175850	174599	175780		orf19.9567|IPF14813.2|IPF14812.3|Contig4-1775_0004|Contig4-1775_0006|orf6.2115|CA0912|CaO19.9567|RPA49|CaO19.2017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	175924	176042	-	tl(caa)2	175924	176042	2	176042|175967	176004|175924				tL(CAA)2.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	176331	176990	-	orf19.2016	176331	176990	1	176990	176331	176936	176520		orf19.9566|IPF14810.2|IPF29222.1|orf6.2116|CA0913|CaO19.9566|CaO19.2016|IPF14810	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	177194	177851	-	ntar_297	177194	177851	1	177851	177194					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	178024	178323	+	ntar_298	178024	178323	1	178024	178323					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	178038	179719	-	orf19.2014	178038	179719	1	179719	178038	179692	178316	BCY1	orf19.9565|SRA1|orf6.573|orf6.2117|IPF19590.1|IPF19228.1|IPF19591.1|Contig4-2036_0005|Contig4-2036_0006|orf6.574|CA0914|orf19.2015	Regulatory subunit of protein kinase A; required for nuclear localization of Tpk1p; physically interacts with Tpk1p; essential for viability; apoptosis-regulated; bcy1 heterozygous or bcy1 tpk2 mutant has filamentous growth defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	180115	180254	-	ntar_299	180115	180254	1	180254	180115					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	180729	182965	+	orf19.2013	180729	182965	1	180729	182965	180800	182863	KAR2	orf19.9564|orf6.572|IPF15827.2|IPF19229.2|Contig4-1979_0005|orf6.2118|orf6.779|CA0915|CaO19.2013	Similar to chaperones of Hsp70p family; transcriptionally regulated by iron; expression greater in high iron; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	183402	185926	+	orf19.2012	183402	185926	2	183402|183563	183424|185926	183402	185876	NOT3	orf19.9563|IPF18023.2|IPF15994.2|Contig4-1979_0003|Contig4-1979_0004|orf6.6349|orf6.778|CA0181|NOT31|CaO19.2012	Protein with similarity to Not5p, putative transcriptional regulator; not required for adherence to buccal epithelial cells or for virulence in mouse systemic infection; null mutant colonies exhibit slightly decreased filamentation ratio [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=A]
Ca21chr2	185888	186283	-	orf19.2010	185888	186283	1	186283	185888	186283	185888		orf19.9561|IPF20150.1|IPF20049.1|Contig4-1979_0001|orf6.6350|orf6.776|CA3932|CaO19.2010|IPF20150	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	186639	188159	+	orf19.2009	186639	188159	1	186639	188159	186664	188064		orf19.9560|IPF18281.1|IPF15997.3|Contig4-1590_0004|orf6.6351|orf6.775|CA3933|PEX12|CaO19.2009|IPF18281	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	188291	189621	+	orf19.2008	188291	189621	1	188291	189621	188354	189604		orf19.9559|IPF25272.1|IPF17119.2|Contig4-1590_0001|Contig4-1590_0002|orf6.6352|CA3934|CaO19.9559|CaO19.2008|IPF17119	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	189570	192698	-	orf19.2007	189570	192698	1	192698	189570	192622	189686		orf19.9558|IPF25347.1|IPF14688.2|Contig4-2862_0002|orf6.6353|CA3935|CaO19.2007|LUV1|CaO19.9558|IPF14688	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	192779	193693	+	orf19.2006.1	192779	193693	1	192779	193693	193378	193563	COX17	IPF25343.1|IPF14687.1|Contig4-2862_0004|CA3936	ORF predicted by Annotation Working Group; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	193688	194888	-	orf19.2006	193688	194888	1	194888	193688	194750	193728		orf19.9557|IPF14686.2|IPF29219.1|Contig4-2862_0005|orf6.6354|CA3937|CaO19.2006|IPF14686	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	195233	198938	-	orf19.2005	195233	198938	1	198938	195233	198415	195380	REG1	orf19.9556|IPF4764.2|IPF29238.1|Contig4-2862_0007|orf6.6355|CA3938|CaO19.2005|IPF4764	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-induced; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	199107	199588	-	ntar_300	199107	199588	1	199588	199107					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	199625	199984	+	ntar_301	199625	199984	1	199625	199984					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	200554	201372	+	ntar_302	200554	201372	1	200554	201372	200873	201013			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	201247	203176	-	orf19.2003	201247	203176	1	203176	201247	203088	201472	HNM1	orf19.9554|IPF4757.1|IPF19469.2|Contig4-2862_0011|orf6.42|orf6.6357|CA3939|HNM2|CaO19.2003	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; shows colony morphology-related gene regulation by Ssn6p; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	204059	204638	-	ntar_303	204059	204638	1	204638	204059					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	204783	207947	+	orf19.2002	204783	207947	1	204783	207947	204929	207811		orf19.9553|IPF4755.2|IPF29205.1|Contig4-1886_0001|orf6.6358|CA3940|NIC96|CaO19.2002	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	207964	208946	+	orf19.2001	207964	208946	1	207964	208946	208043	208798		orf19.9552|IPF25291.1|IPF4754.2|orf6.6359|CA3941|CaO19.9552|CaO19.2001|IPF4754	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	208761	211371	-	orf19.2000	208761	211371	1	211371	208761	211319	208791		orf19.9551|IPF25226.1|IPF4753.2|Contig4-2876_0001|orf6.6360|CA3942|CHL1|CaO19.2000|CaO19.9551	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	211479	212185	+	orf19.1999	211479	212185	1	211479	212185	211535	212116		orf19.9550|IPF18279.2|IPF4751.2|Contig4-2876_0002|orf6.6361|CA3943|CaO19.9550|CaO19.1999|IPF4751	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	212169	214784	-	ntar_1416	212169	214784	2	214784|214517	214632|212169	212479	212273			 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	212374	214693	+	orf19.1998	212374	214693	1	212374	214693	212498	214615		orf19.9549|IPF25233.1|IPF4750.1|Contig4-2876_0006|orf6.6362|CA3944|CaO19.1998|CaO19.9549|IPF4750	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	215370	216684	+	orf19.1996	215370	216684	1	215370	216684	215567	216628	CHA1	orf19.9548|orf6.6363|19.9548|CHA2|IPF4749.2|IPF8165.3|IPF29220.1|Contig4-2876_0008|orf6.766|CA3945|CA6267|orf19.1997|CHA12.3f|CHA12	Protein similar to serine/threonine dehydratases, catabolic; negatively regulated by Rim101p; expression greater in low iron; regulated on white-opaque switching; filament induced; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	216930	217045	-	tl(uaa)1	216930	217045	2	217045|216975	217007|216930				tL(UAA)1.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	217357	218462	-	ntar_304	217357	218462	1	218462	217357	217909	217745			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	217654	218064	+	ntar_305	217654	218064	1	217654	218064	217748	217873			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	218454	218785	+	ntar_306	218454	218785	1	218454	218785					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	218802	218978	-	ntar_307	218802	218978	1	218978	218802					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	219235	221605	-	orf19.1995	219235	221605	1	221605	219235	221449	219320		orf19.9547|IPF4742.2|IPF17173.3|Contig4-2500_0005|Contig4-2500_0006|orf6.6364|orf6.767|CA3946|MNN22|CaO19.1995|MNN2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	222154	222616	+	ntar_308	222154	222616	1	222154	222616	222154	222288			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	222621	223247	-	ntar_309	222621	223247	1	223247	222621					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	223477	225692	+	orf19.1994	223477	225692	1	223477	225692	223605	225650		orf19.9546|IPF25236.1|IPF14768.2|Contig4-2198_0005|orf6.6365|CA3947|CaO19.9546|SNX41|CaO19.1994|IPF14768	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	225952	227504	+	orf19.1993	225952	227504	1	225952	227504	226005	227255		orf19.9545|IPF25273.1|IPF14766.2|Contig4-2198_0009|orf6.6366|CA3948|RPN9|CaO19.1993|CaO19.9545	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	227543	229233	-	orf19.1992	227543	229233	1	229233	227543	229131	227572	SIR2	orf19.9544|IPF17303.2|IPF18997.2|orf6.6367|CA3949|SIR21|CaO19.1992	Required for wild-type lifespan, asymmetric inheritance of oxidatively damaged proteins, rDNA silencing; regulates phenotypic switching in strain 3153A, not WO-1; partially functionally complements S. cerevisiae sir2 mutant mating defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	230312	232374	+	orf19.1991	230312	232374	1	230312	232374	230378	232237		orf19.9542|IPF19793.1|IPF16743.2|Contig4-1687_0002|orf6.1291|orf6.6369|CA3950|CaO19.1991|PTM1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	232328	234628	-	orf19.1990	232328	234628	1	234628	232328	234442	232550	SNX4	orf19.9541|IPF25265.1|IPF15225.2|Contig4-2093_0003|Contig4-2093_0004|orf6.1292|orf6.6370|CA0402|CaO19.1990|IPF15225	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	234866	236465	-	orf19.1989	234866	236465	1	236465	234866	236395	235037	DCW1	orf19.9540|PGA51|IPF25268.1|IPF15224.2|Contig4-2093_0006|orf6.1293|CA0403|CaO19.1989|CaO19.9540|IPF15224	Protein with predicted GPI modification; dfg5 dcw1 double mutant is inviable; not required for wild-type hyphal growth; increased mRNA abundance observed in cyr1 homozygous null mutant (yeast-form or hyphal); fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	237124	239457	-	orf19.1441	237124	239457	1	239457	237124	239103	237247		orf19.9016|IPF25761.1|IPF14657.2|Contig4-2134_0003|orf6.1060|CA0284|CaO19.9016|CaO19.1441|IPF14657	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	241096	243457	+	orf19.1442	241096	243457	1	241096	243457	241143	243251	PLB4.5	orf19.9017|orf19.9018|IPF15731.2|IPF15733.2|IPF14660.3|IPF29416.1|PLB4.3|Contig4-2174_0003|Contig4-2174_0004|orf6.1059|orf6.795|orf6.796|PLB4|PLB4.5f|PLB4.3f|CA0185|CA0186|orf19.1443	Putative phospholipase B; Hog1p-induced; regulated by Ssn6p; putative GPI-anchor; repressed during cell wall regeneration; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	243876	245733	+	orf19.1444	243876	245733	1	243876	245733	244023	245591		orf19.9019|IPF17555.3|IPF29409.1|Contig4-2174_0001|orf6.7129|CA4555|ENT2|CaO19.1444|CA0187|IPF15734|IPF15734.1|IPF17555.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	245742	248619	-	orf19.1445	245742	248619	1	248619	245742	248531	245820	ESC4	orf19.9020|IPF25740.1|IPF7874.2|Contig4-3018_0027|Contig4-3018_0028|orf6.7128|CA4554|CaO19.9020|CaO19.1445|IPF7874	Protein similar to S. cerevisiae Esc4p, which represses transposition; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	248807	251617	-	orf19.1446	248807	251617	1	251617	248807	250508	249030	CLB2	orf19.9021|IPF25776.1|IPF7873.2|CYB1|Contig4-3018_0026|orf6.7127|CA4553|CaO19.9021|CaO19.1446	B-type mitotic cyclin (cyclin-dependent protein kinase regulatory subunit); essential; required for wild-type mitotic exit; role in cell polarization; interacts with catalytic subunit Cdk1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	252317	252519	-	ntar_310	252317	252519	1	252519	252317	252484	252341			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	253735	253869	+	ntar_311	253735	253869	1	253735	253869					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	254298	256293	-	orf19.1447	254298	256293	1	256293	254298	256196	254580		orf19.9022|IPF25767.1|IPF7869.1|Contig4-3018_0021|orf6.7126|CA4552|CaO19.1447|CaO19.9022|IPF7869	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	256675	257518	+	orf19.1448	256675	257518	1	256675	257518	256733	257299	APT1	orf19.9023|IPF25817.1|IPF7867.1|Contig4-3018_0020|orf6.7125|CA4551|CaO19.9023|CaO19.1448	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; repressed by nitric oxide; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	257328	257905	-	orf19.1448.1	257328	257905	2	257905|257694	257824|257328	257845	257441			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	258078	258780	-	orf19.1449	258078	258780	1	258780	258078	258767	258078		orf19.9024|IPF25807.1|IPF7863.1|IPF7863|Contig4-3018_0017|orf6.7124|CA4549|CaO19.1449|CaO19.9024	Increased transcription is observed in an azole-resistant strain that overexpresses MDR1; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr2	259049	260155	-	orf19.1450	259049	260155	1	260155	259049	260155	259049			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	260740	265822	+	orf19.1451	260740	265822	1	260740	265822	260784	265781	SRB9	orf19.9026|IPF25829.1|IPF6242.2|Contig4-3018_0009|Contig4-3018_0011|Contig4-3018_0012|Contig4-3018_0014|orf6.7122|CA4547|orf6.514|CaO19.9026|SSN2|CaO19.1451	Protein with similarity to S. cerevisiae Srb9p transcription mediator; transposon mutation affects filamentous growth; suppresses S. cerevisiae diploid filamentous (flo8, ste7, ste12, tec1) or haploid invasive (flo8) mutant growth defects [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	265918	268971	+	orf19.1453	265918	268971	1	265918	268971	265953	268823	SPT5	orf19.9028|IPF25736.1|IPF6247.1|Contig4-3018_0007|orf6.7120|CA4546|CaO19.9028|CaO19.1453	Protein similar to S. cerevisiae Spt5p transcription elongation factor; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	268825	270558	-	orf19.1457	268825	270558	1	270558	268825	270508	268985		orf19.9032|IPF25773.1|IPF6250.1|Contig4-3018_0004|orf6.7116|CA4545|CaO19.9032|SSL1|CaO19.1457	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	270261	270695	+	orf19.1456	270261	270695	1	270261	270695	270261	270695			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	270671	271572	-	orf19.1458	270671	271572	1	271572	270671	271542	270697		orf19.9033|IPF25800.1|IPF6252.1|Contig4-3018_0001|orf6.7115|CA4544|CaO19.1458|TAD2|CaO19.9033|IPF6252	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	271655	272881	+	orf19.1459	271655	272881	1	271655	272881	271750	272832	PPE1	orf19.9034|IPF25793.1|IPF6254.1|orf6.7114|CA4543|CaO19.9034|CaO19.1459	Protein similar to S. cerevisiae Ppe1p; shows genetic interaction with some genes involved in diploid filamentous growth and haploid invasive growth in S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	272822	275138	-	orf19.1460	272822	275138	1	275138	272822	275001	272857		orf19.9035|IPF25753.1|IPF6255.1|Contig4-2555_0007|orf6.7113|CA4542|CaO19.9035|CaO19.1460|IPF6255	Putative glutamine-dependent NAD synthetase, involved in NAD salvage pathway [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	275432	276770	+	orf19.1461	275432	276770	1	275432	276770	275494	276735		orf19.9036|IPF25785.1|IPF6257.1|Contig4-2555_0005|orf6.7112|CA4541|CaO19.9036|CaO19.1461|IPF6257	Predicted ORF in Assemblies 19, 20 and 21; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	277000	279604	+	orf19.1462	277000	279604	1	277000	279604	277127	279472	SMP2	orf19.9037|IPF25747.1|IPF6259.2|Contig4-2555_0003|orf6.7111|CA4540|CaO19.1462|CaO19.9037	Transcription is regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	279905	282156	+	orf19.1464	279905	282156	1	279905	282156	280251	282089	BMT5	orf19.9039|IPF18203.2|IPF6260.2|orf6.7109|CA4539|CaO19.1464|WRY6|CaO19.9039|IFQ4	Putative beta-mannosyltransferase, member of a 9-gene family that includes characterized genes BMT1, BMT2, BMT3, and BMT4 with roles in beta-1,2-mannosylation of cell wall phosphopeptidomannan; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	282310	283037	+	orf19.1465	282310	283037	1	282310	283037	282314	282859		orf19.9040|IPF25815.1|IPF20018.1|Contig4-3015_0023|Contig4-3015_0024|orf6.7108|CA4538|CaO19.9040|PAA12|CaO19.1465|IPF20018	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	283089	283942	+	orf19.1466	283089	283942	1	283089	283942	283107	283874	REX2	orf19.9041|IPF25805.1|IPF4375.1|Contig4-3015_0021|orf6.7107|CA4537|REX20|CaO19.9041|CaO19.1466|YNT2	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	284175	284945	+	orf19.1467	284175	284945	1	284175	284945	284229	284633	COX13	orf19.9042|IPF25830.1|IPF4376.1|Contig4-3015_0020|orf6.7106|CA4536|CaO19.9042|CaO19.1467	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	284750	287106	-	orf19.1468	284750	287106	1	287106	284750	286599	285040		orf19.9043|IPF25772.1|IPF4377.1|Contig4-3015_0018|orf6.7105|CA4535|CDC55|CaO19.1468|CaO19.9043	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	287700	288745	-	orf19.1470	287700	288745	2	288745|288234	288639|287700	288228	287869	RPS26A	orf19.9045|IPF25866.1|IPF4380.2|Contig4-3015_0015|orf6.7103|CA4534|CaO19.1470|RPS26|CaO19.9045	Predicted ribosomal protein; regulated by Nrg1p, Tup1p; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	289048	289246	-	ntar_312	289048	289246	1	289246	289048					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	289361	290754	+	orf19.1471	289361	290754	2	289361|289895	289574|290754	289905	290378	COX4	orf19.9046|IPF25835.1|IPF20017.1|Contig4-3015_0013|orf6.7102|CA4533|CaO19.9046|CaO19.1471	Protein described as subunit IV of cytochrome c oxidase; transcription is regulated by Mig1p; macrophage/pseudohyphal-induced gene; macrophage-induced protein; repressed by nitric oxide: intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	291061	292250	+	orf19.1473	291061	292250	1	291061	292250	291132	292226		orf19.9048|IPF25790.1|IPF4386.1|Contig4-3015_0011|orf6.7100|CA4532|CaO19.1473|CaO19.9048|IPF4386	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	292450	296359	+	orf19.1474	292450	296359	1	292450	296359	292480	296253	SLA1	orf19.9049|IPF25863.1|IPF4392.1|Contig4-3015_0009|orf6.7099|CA4531|CaO19.9049|CaO19.1474	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p and Mig1p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	296573	298204	+	orf19.1476	296573	298204	1	296573	298204	296573	298204		orf19.9051|IPF25770.1|IPF4394.1|Contig4-3015_0008|orf6.7097|CA4530|IME4|CaO19.9051|CaO19.1476	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	297970	298931	-	orf19.1477	297970	298931	1	298931	297970	298785	298207		orf19.9052|IPF25812.1|IPF4395.1|Contig4-3015_0007|orf6.7096|CA4529|CaO19.9052|CaO19.1477|IPF4395	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	298964	301526	-	orf19.1478	298964	301526	1	301526	298964	301509	299254		orf19.9053|IPF25749.1|IPF4396.1|Contig4-3015_0004|Contig4-3015_0005|orf6.7095|CA4528|CaO19.1478|STT3|CaO19.9053	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	301748	304474	-	orf19.1479	301748	304474	1	304474	301748	304222	301880		orf19.9054|IPF4398.3|IPF29400.1|Contig4-3015_0002|orf6.2103|orf6.7094|CA4527|CaO19.1479|IPF4398|IPF4398.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	305429	306209	+	orf19.1480	305429	306209	1	305429	306209	305492	306022		orf19.9055|IPF25808.1|IPF4401.2|Contig4-2219_0007|orf6.2104|CA0903|CaO19.1480|CaO19.9055|IPF4401	Protein described as succinate dehydrogenase, enzyme of citric acid cycle; downregulated by Efg1p; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	306188	308965	-	orf19.1481	306188	308965	1	308965	306188	308924	306408	HAP42	orf19.9056|IPF25743.1|IPF4403.2|Contig4-2219_0003|Contig4-2219_0005|orf6.2105|CA0904|CaO19.1481|CaO19.9056|IPF4403	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	309613	310350	+	orf19.1482	309613	310350	1	309613	310350	309760	310080		orf19.9057|IPF25838.1|IPF4405.1|Contig4-2219_0002|orf6.2106|CA0905|CaO19.9057|CaO19.1482|IPF4405	Predicted ORF in Assemblies 19, 20 and 21; expression regulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	310024	310685	-	orf19.1483	310024	310685	1	310685	310024	310614	310219		orf19.9058|IPF25853.1|IPF4406.2|Contig4-2219_0001|orf6.2107|CA0906|CaO19.9058|CaO19.1483|IPF4406	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	310743	311702	+	orf19.1484	310743	311702	1	310743	311702	310886	311644		orf19.9059|IPF25804.1|IPF19889.1|Contig4-2638_0001|orf6.2108|CA0907|CaO19.9059|CaO19.1484|IPF19889	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	311626	312247	-	orf19.1485	311626	312247	1	312247	311626	312166	311825		orf19.9060|IPF6016.2|Contig4-2638_0003|orf6.2109|CA0908|MRPL31|CaO19.9060|CaO19.1485	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	314224	315476	-	orf19.1486	314224	315476	1	315476	314224	315173	314676		orf19.9061|IPF6011.2|IPF6010.3|Contig4-2638_0008|orf6.2256|CA1000|CaO19.9061|CaO19.1486|IPF6011	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	316830	317209	-	ntar_313	316830	317209	1	317209	316830					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	322081	323268	-	orf19.1488	322081	323268	1	323268	322081	323268	322609		orf19.9065|IPF6006.2|IPF29419.1|Contig4-2801_0001|orf6.2260|CA1001|CaO19.1488|CaO19.9065|IPF6006	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	323401	323519	-	tl(caa)1	323401	323519	2	323519|323444	323481|323401				tL(CAA)1.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	327044	327316	+	ntar_314	327044	327316	1	327044	327316					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	327699	332303	+	orf19.1490	327699	332303	1	327699	332303	327699	331928	MSB2	orf19.9067|IPF25849.1|IPF6003.1|Contig4-2801_0007|orf6.2804|CA1345|CaO19.9067|CaO19.1490|IPF6003	Mucin family member, possible sensor of cell wall damage; required for Cek1p phosphorylation in response to cell wall stress; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	332538	332819	+	ntar_315	332538	332819	1	332538	332819	332542	332712			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	333010	333297	+	orf19.1490.1	333010	333297	1	333010	333297	333010	333297			Predicted ORF in retrotransposon Tca16 with similarity to the Gag-Pol region of retrotransposons; added to Assembly 21 based on comparative genome analysis; overlaps orf19.1490.2, which is annotated as blocked reading frame [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	334106	336093	-	orf19.1491	334106	336093	1	336093	334106	336020	334176		orf19.9068|IPF14405.2|IPF5991.3|Contig4-2801_0010|orf6.1460|orf6.2805|CA0492|CaO19.1491|SNU71	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	336175	338557	+	orf19.1492	336175	338557	1	336175	338557	336574	338541	PRP39	orf19.9069|IPF25748.1|IPF14401.2|Contig4-2358_0005|orf6.1461|CA0493|CA6189|PRP39.5f|CaO19.9069|CaO19.1492|PRP39.3f|PRP39.3	Putative component of the U1 snRNP, involved in splicing; ortholog of S. cerevisiae PRP39; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	338488	340616	-	orf19.1493	338488	340616	1	340616	338488	340557	338599	RAD7	orf19.9070|IPF14400.2|IPF16848.2|Contig4-2358_0001|orf6.1462|orf6.936|CA0494|CaO19.1493	Protein similar to S. cerevisiae Rad7p, which is a subunit of the Nucleotide Excision Repair Factor 4; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	341120	342877	+	orf19.1494	341120	342877	2	341120|341491	341305|342877	341240	342678	RAD23	orf19.9071|IPF25788.1|IPF16846.2|Contig4-2358_0003|orf6.935|CA0231|CaO19.1494	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	342710	343698	-	orf19.1495	342710	343698	1	343698	342710	343631	342834		orf19.9072|IPF16638.1|IPF19099.1|Contig4-2358_0004|orf6.3546|orf6.934|CA1860|UTR4|CaO19.1495	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	343808	344435	+	ntar_316	343808	344435	1	343808	344435					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	343891	345349	-	orf19.1496	343891	345349	1	345349	343891	345349	343994		orf19.9073|IPF19614.1|IPF19615.1|orf6.933|orf6.3545|CA1859|CaO19.1496|IPF19614.3f|IPF19614	Putative transcription factor with zinc finger DNA-binding motif; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	345494	346830	-	orf19.1497	345494	346830	1	346830	345494	346606	345494		ZCF6|IPF19100.2|CA6255|CaO19.1497|IPF19614.5f	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr2	350120	354286	+	orf19.1499	350120	354286	1	350120	354286	350731	354165	CTF1	orf19.9075|IPF25868.1|IPF15240.2|Contig4-2582_0009|orf6.3543|CA6190|CaO19.9075|CaO19.1499|IPF15240	Putative zinc-finger transcription factor, similar to A. nidulans FarA and FarB; activates genes required for fatty acid degradation; induced by oleate; null mutant displays carbon source utilization defects and slightly reduced virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	354220	355901	-	orf19.1500	354220	355901	1	355901	354220	355815	354292		orf19.9076|IPF15344.2|IPF15343.3|Contig4-2650_0016|orf6.3542|CA1858|CaO19.1500|IPF15344	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	356077	357425	+	orf19.1502	356077	357425	1	356077	357425	356131	356898		orf19.9078|IPF25801.1|IPF15345.3|Contig4-2650_0014|orf6.192|orf6.3540|CA0028|CaO19.1502|IPF15345|IPF15345.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	357258	360070	-	orf19.1504	357258	360070	1	360070	357258	359972	357411		orf19.9080|IPF15348.2|IPF29398.1|Contig4-2650_0011|orf6.193|orf6.3538|CA1857|CaO19.1504|IPF15348	Putative patatin-like phospholipase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	360753	362170	-	orf19.1505	360753	362170	1	362170	360753	361937	360900		orf19.9081|IPF13689|IPF13689.2|IPF18995.2|Contig4-2650_0009|orf6.1309|orf6.3537|CA1856|CaO19.1505	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	364198	364623	-	orf19.1506	364198	364623	1	364623	364198	364623	364198			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	365004	367152	-	orf19.1507	365004	367152	1	367152	365004	367058	365082		orf19.9083|IPF25758.1|IPF17676.2|Contig4-1513_0004|Contig4-2650_0001|Contig4-2650_0018|orf6.1307|CA0411|CaO19.9083|AMN1|CaO19.1507|IPF17676	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	367250	367602	-	orf19.1508	367250	367602	1	367602	367250	367585	367250		IPF29448.1|orf6.1306|CaO19.1508	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr2	367329	367837	+	ntar_317	367329	367837	1	367329	367837					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	368671	369526	+	ntar_318	368671	369526	1	368671	369526					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	369834	373022	-	orf19.1509	369834	373022	1	373022	369834	372659	369888	ROD1	orf19.9084|IPF19576.1|IPF19577.1|Contig4-1782_0002|orf6.344|orf6.3960|CA2177|CaO19.1509	Protein not essential for viability; similar to S. cerevisiae Rod1p, which is a membrane protein with a role in drug tolerance; repressed by Rgt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	374066	374427	+	ntar_319	374066	374427	1	374066	374427					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	374394	376731	-	orf19.1510	374394	376731	1	376731	374394	376459	374579		orf19.9085|IPF9282|IPF25762.1|IPF9282.2|Contig4-1782_0005|orf6.3961|CA2178|CaO19.9085|CaO19.1510	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	377896	386454	-	orf19.1513	377896	386454	1	386454	377896	385840	377966	FAB1	orf19.9088|IPF9288.2|IPF29418.1|Contig4-2754_0006|Contig4-2754_0007|Contig4-2754_0009|orf6.3964|CA2179|CaO19.1513	Phosphatidylinositol 3-phosphate 5-kinase; required for hyphal growth on solid media, and for wild-type vacuolar morphology and acidification; not required for wild-type virulence in mouse systemic infection or for adherence to HeLa cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	386646	388098	+	orf19.1514	386646	388098	1	386646	388098	386900	387922		orf19.9089|IPF9290.2|IPF8244.2|Contig4-1806_0003|Contig4-2754_0001|orf6.3399|orf6.3965|CA2180|IPF9290|CaO19.1514	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	387877	389456	-	orf19.1515	387877	389456	1	389456	387877	389302	388136	CHT4	orf19.9090|IPF25787.1|IPF8245.2|Contig4-1806_0001|orf6.3398|orf6.3966|CA1753|CaO19.1515|IPF8245	Chitinase; similar to S. cerevisiae sporulation-specific Cts2p; functionally complements A. gossypii cts2 mutant sporulation defect; homozygous null mutation causes no obvious defects; transcription decreases upon yeast-to-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	388279	388882	+	ntar_320	388279	388882	1	388279	388882	388327	388470			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	389105	389328	+	ntar_321	389105	389328	1	389105	389328					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	389524	392183	+	orf19.1516	389524	392183	1	389524	392183	389652	392036		orf19.9091|IPF17697.2|IPF8246.2|Contig4-2807_0008|orf6.3397|orf6.3967|CA1752|UBP14|CaO19.1516	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	391983	392343	-	ntar_322	391983	392343	1	392343	391983	392141	391983			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	392570	393940	+	orf19.1517	392570	393940	2	392570|392835	392721|393940	392667	393895	ARO3	orf19.9092|orf6.3396|IPF25795.1|IPF8248.2|Contig4-2807_0007|CA1751|CaO19.1517|CaO19.9092|ARO3.exon2	3-Deoxy-D-arabinoheptulosonate-7-phosphate synthase; enzyme of aromatic amino acid biosynthesis; GCN-regulated; feedback-inhibited by phenylalanine when heterologously produced in S. cerevisiae; Aro3p and Aro4p catalyze the same reaction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	394154	397753	+	orf19.1519	394154	397753	1	394154	397753	394340	397642		orf19.9094|IPF25872.1|IPF8252.2|Contig4-2807_0006|orf6.3394|CA1750|CaO19.1519|CaO19.9094|IPF8252	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	397731	401368	-	orf19.1522	397731	401368	1	401368	397731	401241	398113		orf19.9097|IPF25875.1|IPF8257.2|Contig4-2807_0004|orf6.1171|orf6.3391|CA1748|CaO19.1522|IPF8257.5f|IPF8257	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	402438	404124	-	orf19.1523	402438	404124	1	404124	402438	404124	402466	FMO1	orf19.9098|IPF15750.2|IPF15749.3|Contig4-2017_0003|orf6.1172|orf6.3390|CA0348|CaO19.1523|IFK1	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	405578	407053	+	orf19.1524	405578	407053	1	405578	407053	405578	407053	SPR3	orf19.9100|IPF15746.3|IPF16732.2|Contig4-1766_0002|Contig4-2017_0004|orf6.1173|orf6.1204|CA0363|CaO19.1524	[NOT TRANSCRIBED?] Septin; mutant has no obvious phenotype [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	407366	407909	+	ntar_323	407366	407909	1	407366	407909					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	408121	409779	+	orf19.1525	408121	409779	1	408121	409779	408210	409406		orf19.9101|IPF18883.2|IPF15983.2|Contig4-2444_0002|orf6.1205|orf6.1860|CA0364|CaO19.1525|NMD4|IPF15983	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	410141	415541	+	orf19.1526	410141	415541	1	410141	415541	410274	415346	SNF2	orf19.9102|IPF15319.2|IPF15980.3|Contig4-2444_0006|Contig4-2444_0007|orf6.1206|orf6.1859|CA0747|CaO19.1526	Protein involved in transcriptional regulation; ortholog of S. cerevisiae Snf2p, which is the catalytic subunit of the SWI/SNF chromatin remodeling complex; interacts with Swi1p; SWI/SNF complex is essential for hyphal growth and virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	415435	416174	-	orf19.1527	415435	416174	1	416174	415435	416069	415515		orf19.9103|IPF25813.1|IPF14921.2|Contig4-2467_0002|orf6.1858|CA0746|CaO19.9103|CaO19.1527|IPF14921	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	416463	417780	+	orf19.1528	416463	417780	1	416463	417780	416571	417626		orf19.9104|IPF14920.2|IPF29413.1|Contig4-2467_0004|Contig4-2467_0005|orf6.1857|CA0745|MTF1|CaO19.9104|CaO19.1528	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	417866	418894	-	orf19.1529	417866	418894	1	418894	417866	418894	417866			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	418987	419508	-	orf19.1530	418987	419508	1	419508	418987	419508	418987		IPF29422.1|CA6256|CaO19.1530|IPF14919.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	419619	422319	-	orf19.1531	419619	422319	1	422319	419619	422123	419748		orf19.9106|IPF25746.1|IPF16839.3|Contig4-2467_0008|orf6.1855|orf6.931|CA0743|RNA14|CaO19.1531|RNA14.3eoc|IPF14917.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	422880	424448	+	orf19.1532	422880	424448	1	422880	424448	422927	423997		orf19.9107|IPF25786.1|IPF17420.2|Contig4-2467_0011|orf6.932|CA0230|CaO19.1532|TOM37	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	423934	424068	-	ntar_324	423934	424068	1	424068	423934					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	424554	424733	+	ntar_325	424554	424733	1	424554	424733					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	424930	426716	+	orf19.1533	424930	426716	1	424930	426716	425071	426447		orf19.9108|IPF15116.1|IPF17419.2|Contig4-1607_0002|orf6.839|CA0201|CaO19.1533|IPF17419|IPF15116	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	426198	426342	-	ntar_326	426198	426342	1	426342	426198					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	426988	429418	+	orf19.1534	426988	429418	1	426988	429418	427404	429179		orf19.9109|orf6.1064|IPF15119.2|IPF19059.2|orf6.838|CA0200|CaO19.1534|ZRT3|IPF15119	Protein similar to S. cerevisiae Zrt3p, which is a transporter of zinc ions; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	429228	430625	-	orf19.1535	429228	430625	1	430625	429228	430444	429650		orf19.9110|IPF25803.1|IPF14392.2|Contig4-2088_0007|orf6.1063|CA0285|CaO19.9110|CaO19.1535|IPF14392	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	429638	429846	+	ntar_327	429638	429846	1	429638	429846					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	432334	434724	+	orf19.1536	432334	434724	1	432334	434724	433195	434631		orf19.9111|IPF19060.1|Contig4-2088_0003|orf6.1061|orf6.1062|orf6.2308|CA6257|CA1030|orf19.1537|ZRC.5f	Putative protein of unknown function, required for normal filamentous growth; mRNA binds to She3p and is localized to hyphal tips; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	434600	436190	-	orf19.1538	434600	436190	1	436190	434600	436109	434841	TLG2	orf19.9112|IPF14397.2|IPF29411.1|Contig4-2088_0010|orf6.2307|CA1029|CaO19.1538	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	437457	438834	-	orf19.1539	437457	438834	1	438834	437457	438826	437627		orf19.9113|IPF25782.1|IPF6488.2|Contig4-2381_0006|orf6.2306|CA1028|CaO19.9113|CaO19.1539|IPF6488	Predicted ORF in Assemblies 19, 20 and 21; highly induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	442660	446680	-	orf19.1541	442660	446680	1	446680	442660	446421	443524		orf19.9115|IPF6493|IPF18788.2|IPF6493.2|Contig4-2847_0017|Contig4-2847_0018|orf6.2304|orf6.821|CA0193|CaO19.1541	Protein not essential for viability; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	447781	447970	+	ntar_328	447781	447970	1	447781	447970					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	448714	450664	-	orf19.1542	448714	450664	1	450664	448714	450618	448810	HEX3	orf19.9116|IPF25764.1|IPF6497.2|Contig4-2847_0014|orf6.6400|CA3970|CaO19.1542|CaO19.9116|IPF6497	Protein similar to S. cerevisiae Hex3p, which is involved in DNA damage response; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	450891	451382	+	ntar_329	450891	451382	1	450891	451382					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	451305	453032	-	orf19.1543	451305	453032	1	453032	451305	452791	451490	OPI1	orf19.9117|orf6.6401|IPF6498|IPF25784.1|IPF6498.2|Contig4-2847_0013|CA3971|CaO19.1543|CaO19.9117	Functional homolog of S. cerevisiae Opi1p, which is a transcriptional repressor of INO1 involved in inositol biosynthesis; has leucine zipper and putative Opi1-Sin3 interaction domain; interacts with ScSin3p, but not CaSin3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	455561	456598	+	orf19.1544	455561	456598	1	455561	456598	455598	456395		orf19.9118|IPF6504.2|IPF29417.1|Contig4-2788_0007|Contig4-2847_0005|orf6.6402|CA3972|CaO19.1544|CaO19.9118|IPF6504	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	456417	457023	-	orf19.1545	456417	457023	1	457023	456417	456971	456504		orf19.9119|IPF25834.1|IPF6505.2|Contig4-2847_0004|orf6.6403|CA3973|MRPS8|CaO19.9119|CaO19.1545|IPF6505	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	457203	458210	+	orf19.1546	457203	458210	1	457203	458210	457283	458161		orf19.9120|IPF25799.1|IPF6507.2|Contig4-2847_0002|orf6.6404|CA3974|CaO19.1546|FMP39|CaO19.9120|IPF6507	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	458133	459087	-	orf19.1547	458133	459087	1	459087	458133	459087	458182		orf19.9121|IPF25796.1|IPF20152.1|Contig4-2847_0001|orf6.6405|CA3975|PNK1|CaO19.9121|CaO19.1547|IPF20152	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	459116	459915	+	orf19.1548	459116	459915	1	459116	459915	459139	459870		orf19.9122|IPF25806.1|IPF15310.2|orf6.6406|CA3976|CaO19.1548|SNU23|CaO19.9122	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	460126	461241	+	orf19.1549	460126	461241	1	460126	461241	460292	461038		orf19.9123|IPF25802.1|IPF20153.1|Contig4-2092_0006|orf6.6407|CA3977|CaO19.9123|CaO19.1549|IPF20153	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; identified in detergent-resistant membrane fraction (possible lipid raft component); predicted transmembrane helix [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	461216	461949	-	orf19.1552	461216	461949	1	461949	461216	461919	461344	CPR3	orf19.9126|IPF25810.1|IPF20154.1|Contig4-2092_0004|orf6.6410|CA3978|CaO19.9126|CaO19.1552	Protein described as a peptidyl-prolyl cis-trans isomerase; macrophage-induced protein; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	461669	462172	+	orf19.1551	461669	462172	1	461669	462172	461669	462172		orf19.9125|IPF25828.1|IPF20155.1|Contig4-2163_0001|orf6.6409|CaO19.9125|CaO19.1551	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	462279	464062	-	orf19.1553	462279	464062	2	464062|463716	463803|462279	463878	462431	ENT3	orf19.9127|IPF25779.1|IPF25794.1|IPF25744.1|IPF7129.2|IPF7127.2|IPF7128.2|Contig4-2092_0009|Contig4-2163_0004|orf6.6411|CA3979|ENT3.3f	Putative protein of unknown function, induced during the mating process; transcription is upregulated in an RHE model of oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	464446	468369	-	orf19.1555	464446	468369	1	468369	464446	468209	464538	SAC3	orf19.9129|IPF7130.2|IPF29415.1|IPF18010.3|Contig4-2824_0019|Contig4-2824_0021|orf6.355|orf6.6413|CA6258|CA3982|orf19.1556|SAC3.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	468494	469436	-	orf19.1557	468494	469436	1	469436	468494	469414	468572		orf19.9130|IPF7133.1|IPF19325.2|Contig4-2824_0012|Contig4-2824_0014|orf6.356|orf6.6414|CA3983|CaO19.1557|IPF7133|IPF7133.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	469476	470788	-	orf19.1559	469476	470788	1	470788	469476	470709	469612	HOM2	orf19.9132|IPF7136.1|IPF29412.1|Contig4-2824_0011|orf6.6416|CA3984|CaO19.1559	Putative aspartate-semialdehyde dehydrogenase; fungal-specific (no human or murine homolog); ketoconazole-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	471192	473090	+	orf19.1560	471192	473090	1	471192	473090	471244	472860	POB3	orf19.9133|IPF25771.1|IPF7138.2|Contig4-2824_0009|orf6.6417|CA3985|CaO19.1560|CaO19.9133	Protein similar to S. cerevisiae Pob3p, which is involved in chromatin assembly and disassembly; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	474452	475259	+	orf19.1562	474452	475259	1	474452	475259	474686	475228		orf19.9135|IPF25811.1|IPF7141.1|Contig4-2824_0006|orf6.6419|CA3986|CaO19.9135|CaO19.1562|IPF7141	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	476533	478377	+	orf19.1563	476533	478377	1	476533	478377	476654	478294	ECM3	orf19.9136|IPF25768.1|IPF7144.2|Contig4-2824_0004|orf6.6420|CA3987|CaO19.1563|CaO19.9136	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	477018	477342	-	ntar_330	477018	477342	1	477342	477018	477342	477097			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	477408	477724	-	ntar_331	477408	477724	1	477724	477408					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	478523	479524	+	orf19.1564	478523	479524	1	478523	479524	478694	479263		orf19.9137|IPF25819.1|IPF7145.2|Contig4-2824_0002|orf6.6421|CA3988|CaO19.9137|CaO19.1564|IPF7145	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	479286	481270	-	orf19.1565	479286	481270	1	481270	479286	481184	479343		orf19.9138|IPF25756.1|IPF7147.2|Contig4-2824_0022|orf6.6422|CA3989|DUS3|CaO19.1565|CaO19.9138|IPF7147	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	481329	484290	+	orf19.1566	481329	484290	1	481329	484290	481408	484236	UTP21	orf19.9139|IPF25737.1|IPF14782.2|Contig4-2110_0005|Contig4-2110_0006|orf6.6423|CA3990|CaO19.1566|CaO19.9139|IPF14782	Predicted ORF in Assemblies 19, 20 and 21; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	484461	487769	+	orf19.1567	484461	487769	1	484461	487769	484560	487664		orf19.9140|orf19.9141|IPF25780.1|IPF25769.1|IPF19794.1|IPF14783.2|Contig4-2110_0002|Contig4-2110_0004|orf6.6424|orf6.6425|CA3991|CA3992|orf19.1568|VAM6.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	487721	491580	-	orf19.1569	487721	491580	1	491580	487721	491423	487896	UTP22	orf19.9142|IPF8275.2|IPF29445.1|Contig4-2925_0002|Contig4-2925_0003|Contig4-2925_0005|orf6.6426|CA3993|CaO19.1569|IPF8275	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant; decreased expression in response to prostaglandins; heterozygous null mutant exhibits resistance to parnafungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	491802	494207	+	orf19.1570	491802	494207	1	491802	494207	491866	494052	ERG7	orf19.9143|IPF8270.1|IPF19258.2|Contig4-2925_0007|orf6.480|orf6.6427|CA3994|CaO19.1570	2,3-epoxysqualene-lanosterol cyclase (lanosterol synthase), catalyzes the conversion of 2,3-oxidosqualene to lanosterol in sterol biosynthesis; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	494311	495161	-	orf19.1571	494311	495161	2	495161|494723	494792|494311	495161	494311		orf19.9144|orf19.9145|IPF18269.2|IPF25857.1|IPF8269.2|IPF8268.2|Contig4-2925_0009|Contig4-2925_0010|orf6.479|orf6.6428|orf6.478|CA0091|orf19.1572|IPF8268|CA0092|IPF8268.3f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	496197	496270	+	tv(aac)1	496197	496270	1	496197	496270				tV(AAC)1.2	tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	496613	500809	-	orf19.1573	496613	500809	1	500809	496613	500706	496654		orf19.9146|IPF8267.2|IPF29441.1|Contig4-2925_0014|orf6.1885|orf6.477|CA0761|CaO19.1573|IPF8267	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	501095	503058	+	orf19.1574	501095	503058	1	501095	503058	501240	503006		orf19.9147|IPF15686.2|IPF29407.1|Contig4-2925_0020|orf6.1886|CA0762|TAF7|CaO19.1574|TAF67	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	503216	504463	+	orf19.1575	503216	504463	1	503216	504463	503401	504363	PRS1	orf19.9148|IPF15685.2|IPF9631.1|PRS3|Contig4-2410_0006|orf6.1887|orf6.5345|CA3168|CaO19.1575	Phosphoribosylpyrophosphate synthetase; enzyme of purine, pyrimidine, histidine, and tryptophan biosynthesis; essential; flucytosine induced; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	504678	507226	+	orf19.1576	504678	507226	1	504678	507226	504784	506652		orf19.9149|IPF25763.1|IPF9632.2|Contig4-2410_0005|orf6.5344|CA3167|CaO19.1576|CaO19.9149|IPF9632	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	507756	509084	+	orf19.1577	507756	509084	1	507756	509084	507756	509084		orf19.9150|IPF25781.1|IPF9634.1|Contig4-3005_0030|orf6.5343|CA3166|CaO19.1577|CaO19.9150|IPF9634	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	509403	514738	+	orf19.1578	509403	514738	1	509403	514738	509452	514620		orf19.9151|IPF25824.1|IPF9638.2|Contig4-3005_0028|Contig4-3005_0029|orf6.5342|CA3165|CaO19.1578|RRP5|CaO19.9151|FMI1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	514703	517117	-	orf19.1580	514703	517117	1	517117	514703	517088	514977		orf19.9153|IPF25755.1|IPF13187.2|Contig4-3005_0023|Contig4-3005_0025|orf6.5340|CA3164|YFW3|CaO19.1580|CaO19.9153|IPF13187	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	515743	515920	+	ntar_332	515743	515920	1	515743	515920					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	517722	518054	+	orf19.1581	517722	518054	1	517722	518054	517722	518054		orf19.9154|IPF29446.1|orf6.5339|CaO19.9154|CaO19.1581	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	519117	520844	+	orf19.1582	519117	520844	2	519117|519780	519713|520844	519117	520844		orf19.9155|orf19.9156|IPF25814.1|IPF25792.1|IPF13183.2|IPF13181.2|Contig4-3005_0018|Contig4-3005_0019|orf6.5337|orf6.5338|CA3163|CA3162|orf19.1583|HOL5.5f	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS); mRNA binds to She3p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	519694	520848	-	ntar_333	519694	520848	1	520848	519694	519953	519786			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	521081	522796	+	orf19.1584	521081	522796	1	521081	522796	521169	522701		orf19.9157|IPF25774.1|IPF13121.2|Contig4-3005_0016|orf6.5336|CA3161|CaO19.9157|CaO19.1584|IPF13121.3	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS); shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	521217	522463	-	ntar_334	521217	522463	1	522463	521217	521584	521444			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	522989	523305	-	ntar_335	522989	523305	1	523305	522989	523305	523063			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	523979	525370	+	orf19.1585	523979	525370	1	523979	525370	524084	525196	ZRT2	orf19.9158|IPF25789.1|IPF13128.2|Contig4-3005_0008|orf6.5335|CA3160|CaO19.1585|CaO19.9158	Protein described as predicted zinc transporter; ciclopirox olamine, fluconazole, or alkaline downregulated; transcriptionally induced by interaction with macrophage; amphotericin B induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	525603	526490	-	orf19.1586	525603	526490	1	526490	525603	526490	525603	FGR22	orf19.9159|IPF25798.1|IPF13130.2|PLC3|PLC2|Contig4-3005_0005|orf6.5334|CA3159|PLC22|CaO19.9159|CaO19.1586	Putative phosphatidylinositol-specific phospholipase C (PI-PLC); predicted type 2 membrane protein; no S. cerevisiae ortholog; role in, and regulated by, filamentation; no mouse systemic virulence role; almost identical to orf19.5797 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	526890	528401	-	orf19.1587	526890	528401	1	528401	526890	528401	526890	HGT20	orf19.9160|IPF25777.1|IPF13131.2|Contig4-3005_0004|orf6.5333|CA3158|CaO19.9160|CaO19.1587|IPF13131.3	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; regulated by Nrg1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	529017	529937	+	orf19.1588	529017	529937	1	529017	529937	529140	529559		orf19.9161|IPF25850.1|IPF14456.2|Contig4-3005_0003|orf6.5332|CA3157|CaO19.9161|FMP21|CaO19.1588|IPF14456	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	529990	532049	+	orf19.1589	529990	532049	1	529990	532049	530098	531411		orf19.9162|IPF25783.1|IPF14455.1|Contig4-3005_0002|orf6.5331|CA3156|RRN7|CaO19.9162|CaO19.1589|IPF14455	Putative DNA-binding transcription factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	531829	533492	-	orf19.1589.1	531829	533492	1	533492	531829	533492	532131			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	534851	535636	-	orf19.5842	534851	535636	1	535636	534851	535636	534851		orf19.13264|IPF21411.1|IPF11219.2|orf6.6136|CaO19.5842|CaO19.13264	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	536236	537079	+	orf19.5841	536236	537079	1	536236	537079	536271	537029		orf19.13263|IPF21413.1|IPF11221.1|Contig4-2921_0007|orf6.6137|CA3779|CaO19.5841|CaO19.13263|IPF11221	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	536773	537520	-	orf19.5840	536773	537520	1	537520	536773	537520	537026		orf19.13262|IPF21420.1|IPF11222.1|Contig4-2921_0006|orf6.6138|CA3780|CaO19.13262|CaO19.5840|IPF11222	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	537556	538748	+	orf19.5839	537556	538748	1	537556	538748	537582	538676	PDR17	orf19.13261|IPF21403.1|IPF11224.2|Contig4-2921_0005|orf6.6139|CA3781|CaO19.5839|CaO19.13261|IPF11224	Predicted ORF in Assemblies 19, 20 and 21; role in sensitivity to fluconazole, specifically; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	538971	540044	+	orf19.5838	538971	540044	1	538971	540044	539009	539914		orf19.13260|IPF21408.1|IPF11225.2|Contig4-2921_0004|orf6.6140|CA3782|SER2|CaO19.13260|CaO19.5838	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	539874	540917	-	orf19.5837	539874	540917	1	540917	539874	540881	539988		orf19.13259|IPF21405.1|IPF11226.1|Contig4-2921_0003|orf6.6141|CA3783|CaO19.5837|CaO19.13259|IPF11226	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	540951	541974	-	orf19.5835	540951	541974	1	541974	540951	541905	541063		orf19.13257|IPF21410.1|IPF11229.1|Contig4-2921_0001|orf6.6143|CA3784|RRP7|CaO19.13257|CaO19.5835|IPF11229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	542214	545426	+	orf19.5834	542214	545426	1	542214	545426	542346	545354		orf19.13256|IPF21443.1|IPF19788.1|orf6.6144|CA3785|SXM1|CaO19.5834|CaO19.13256|IPF19788	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	545674	546892	+	orf19.5833	545674	546892	1	545674	546892	545705	546796		orf19.13255|IPF21394.1|IPF14267.1|Contig4-1905_0003|orf6.6145|CA3786|CaO19.13255|UFD1|CaO19.5833	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	546784	547743	-	orf19.5832	546784	547743	1	547743	546784	547558	546917	HPT1	orf19.13254|IPF21416.1|IPF14266.2|Contig4-1905_0001|orf6.6146|CA3787|CaO19.5832|CaO19.13254	Protein abundance is affected by URA3 expression in the CAI-4 strain background; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	548198	549514	-	orf19.5831	548198	549514	1	549514	548198	549514	548198		orf19.13253|IPF21393.1|IPF16445.1|Contig4-1906_0002|orf6.6147|CA3788|CaO19.13253|CaO19.5831|IPF16445	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	549778	550115	-	ntar_336	549778	550115	1	550115	549778					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	550316	553303	+	orf19.5830	550316	553303	1	550316	553303	550397	553195		orf19.13252|orf6.6148|IPF11217.2|IPF27925.1|Contig4-2543_0002|CA3789|CaO19.5830|LHS1|CaO19.13252|IPF11217	Protein similar to S. cerevisiae Hsp70p; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	553488	555726	+	orf19.5828	553488	555726	1	553488	555726	553526	555679		orf19.13250|IPF11215.2|IPF27906.1|Contig4-2543_0003|orf6.6150|CA3790|UAF1|CaO19.5828|IPF11215	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	555368	556697	-	orf19.5827	555368	556697	1	556697	555368	556659	555715	BUB2	orf19.13249|IPF11212|IPF21407.1|IPF11212.2|Contig4-2543_0004|orf6.6151|CA3791|CaO19.5827|CaO19.13249	Predicted ORF in Assemblies 19, 20 and 21; described as similar to S. cerevisiae Bub2p; mutation confers hypersensitivity to amphotericin B; induced upon adherence to polystyrene; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	557037	558713	-	orf19.5826	557037	558713	1	558713	557037	558713	557079		orf19.13248|IPF21388.1|IPF11211.2|Contig4-2543_0005|orf6.6152|CA3792|CaO19.13248|UGA41|CaO19.5826|UGA5	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	560216	560828	+	orf19.5825.1	560216	560828	1	560216	560828	560291	560581		IPF21439.1|IPF5701.2|Contig4-2711_0001|CA3793|IPF5701	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	560614	561414	-	orf19.5825	560614	561414	1	561414	560614	561278	560829		orf19.13247|IPF21425.1|IPF5700.2|Contig4-2711_0003|orf6.6153|CA3794|NCB2|CaO19.13247|CaO19.5825	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	561832	563185	-	orf19.5824	561832	563185	1	563185	561832	563093	562032		orf19.13246|IPF21404.1|IPF5699.2|Contig4-2711_0004|orf6.6154|CA3795|CaO19.5824|CaO19.13246|IPF5699	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	563327	564698	-	orf19.5823	563327	564698	1	564698	563327	564635	563601	SGT2	orf19.13245|IPF21399.1|IPF5697.2|Contig4-2711_0006|orf6.6155|CA3796|CaO19.5823|CaO19.13245	Protein abundance is affected by URA3 expression in the CAI-4 strain background; transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	564850	568512	-	orf19.5821	564850	568512	1	568512	564850	568512	564943		orf19.13243|IPF21436.1|IPF5693.2|Contig4-2711_0009|orf6.6157|CA3797|CaO19.5821|CaO19.13243|IPF5633|IPF5623	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	570159	571793	+	orf19.5820	570159	571793	1	570159	571793	570159	571793	UGA6	orf19.13242|IPF5691.3|IPF27909.1|Contig4-2836_0014|orf6.4039|orf6.6158|CA3798|UGA42|CaO19.5820|CA2224|UGA6.3eoc|IPF19944.1	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	572682	574229	+	orf19.5818	572682	574229	1	572682	574229	573007	574035	SUR2	orf19.13240|IPF21401.1|IPF5688.1|Contig4-2836_0010|orf6.4041|CA2225|CaO19.13240|CaO19.5818	Protein described as similar to ceramide hydroxylase; predicted enzyme of sphingolipid biosynthesis; upregulated in biofilm; regulated by Tsa1p, Tsa1Bp under H2O2 stress conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	574368	575399	+	orf19.5817	574368	575399	2	574368|574563	574483|575399	574430	575084		orf19.13239|IPF21419.1|IPF5686.1|Contig4-2836_0009|orf6.4042|CA2226|BET3.3f|BET3.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	575254	576711	-	orf19.5816	575254	576711	1	576711	575254	576539	575361	EBP7	orf19.13238|IPF21400.1|IPF5684.2|Contig4-2836_0008|orf6.4043|CA2227|CaO19.5816|OYE25|CaO19.13238	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	577696	580215	+	orf19.5815	577696	580215	1	577696	580215	577904	580060	SCT2	orf19.13237|IPF21381.1|IPF5683.2|Contig4-2836_0004|orf6.4044|CA2228|CaO19.5815|GPT2|CaO19.13237|SCT12	Putative glycerol-3-phosphate acyltransferase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	580474	581113	+	orf19.5814	580474	581113	1	580474	581113	580643	580993		orf19.13236|IPF21435.1|IPF5682.2|orf6.4045|CA2229|CaO19.5814|CaO19.13236|IPF5682	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	581161	581507	-	ntar_337	581161	581507	1	581507	581161					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	581910	582540	+	ntar_338	581910	582540	1	581910	582540	582058	582321			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	582476	582806	-	ntar_339	582476	582806	1	582806	582476	582698	582546			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	583104	584223	+	orf19.5813	583104	584223	1	583104	584223	583289	583846		orf19.13235|IPF9302.3|IPF27912.1|Contig4-2152_0007|orf6.4046|orf6.6647|CA4164|CaO19.5813|IPF9302|IPF9302.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	584119	585565	-	orf19.5812	584119	585565	1	585565	584119	585527	584262		orf19.13234|IPF21397.1|IPF9301.2|Contig4-2152_0009|orf6.6646|CA4163|CaO19.13234|CaO19.5812|IPF9301	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	586227	587981	+	orf19.5811	586227	587981	1	586227	587981	586227	587912	MET1	orf19.13233|IPF21386.1|IPF9300.2|Contig4-2921_0008|orf6.6645|CA4162|CaO19.5811|CaO19.13233	Putative uroporphyrin-3 C-methyltransferase; enzyme of methionine biosynthesis; upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; Hog1p-induced; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	588097	589795	+	orf19.5809	588097	589795	1	588097	589795	588237	589598		orf19.13231|IPF21392.1|IPF20164.1|Contig4-2921_0009|orf6.6643|CA4161|IPF20164	Putative arylformamidase, enzyme of the NAD biosynthesis pathway; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr2	589627	591219	-	orf19.5808	589627	591219	1	591219	589627	591139	589898		orf19.13230|IPF21395.1|IPF9294.2|Contig4-2921_0011|orf6.6642|CA4160|CaO19.5808|CaO19.13230|IPF9294	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	591395	593023	-	orf19.5806	591395	593023	1	593023	591395	592987	591488	ALD5	orf19.13228|YER73|IPF17030.2|IPF27910.1|Contig4-2921_0012|orf6.6640|CA4159|ALD99|CaO19.5806	Protein described as an aldehyde dehydrogenase; decreased expression in fluconazole-resistant isolate, or in hyphae; biofilm induced;fluconazole-downregulated; protein abundance is affected by URA3 expression in the CAI-4 strain background [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	595086	597296	-	orf19.5805	595086	597296	1	597296	595086	597148	595394	DLD1	orf19.13227|IPF21387.1|IPF10287.2|DLD3|Contig4-3045_0019|Contig4-3045_0023|orf6.6639|CA4158|CaO19.13227|CaO19.5805	Putative D-lactate dehydrogenase; transcription is specific to white cell type; shows colony morphology-related gene regulation by Ssn6p; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	597427	601625	-	orf19.5804	597427	601625	1	601625	597427	601474	597563	HYU1	orf19.13226|IPF21434.1|IPF10288.2|Contig4-3045_0016|Contig4-3045_0017|orf6.6638|CA4157|CaO19.5804|CaO19.13226	Protein described as hydantoin utilization protein A; induced upon adherence to polystyrene; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	601840	603199	-	orf19.5802	601840	603199	1	603199	601840	603138	602098		orf19.13224|IPF21402.1|IPF10990.2|Contig4-3045_0015|orf6.6636|CA4156|CaO19.13224|CaO19.5802|IPF10990	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	603312	604942	-	orf19.5801	603312	604942	1	604942	603312	604784	603543	RNR21	orf19.13223|IPF21396.1|IPF10991.2|Contig4-3045_0013|orf6.6635|CA4155|RNR2|CaO19.5801|CaO19.13223	Protein described as similar to ribonucleoside-diphosphate reductase; regulated by tyrosol and cell density; transcription is upregulated in response to treatment with ciclopirox olamine; fluconazole or flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	606064	608846	-	orf19.5799	606064	608846	1	608846	606064	608308	606248		orf19.13221|IPF21383.1|IPF20010.1|Contig4-3045_0009|orf6.6633|CA4154|CaO19.13221|CaO19.5799|IPF20010	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	609577	610382	+	ntar_340	609577	610382	1	609577	610382	609732	609872			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	610754	613853	+	orf19.5798	610754	613853	1	610754	613853	610758	613544	LIG4	orf19.13220|CDC9|IPF21371.1|IPF6823.2|Contig4-3045_0005|orf6.6632|CA4153|CaO19.13220|CaO19.5798|DNLI	DNA ligase; mRNA detected in yeast-form and pseudohyphal cells, induced upon hyphal induction; suppresses S. cerevisiae ime1-1 mutant IME2 transcription defect; required for wild-type filamentous growth and wild-type pathogenesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	613916	615114	+	orf19.5797	613916	615114	1	613916	615114	614063	614950	PI-PLC	orf19.13219|IPF21406.1|IPF17332.2|PLC2|Contig4-3045_0004|orf6.6631|CA4152|CA6227|PLC2.5f|CaO19.5797|PLC21|CaO19.13219|PLC2.3f	Phosphatidylinositol (PtdIns)-specific phospholipase C (PI-PLC); predicted type 2 membrane protein; role in, and regulated by, filamentation, Nrg1p and Tup1p; no mouse systemic virulence role; orf19.5797 and orf19.1586 are almost identical [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	615116	616792	+	orf19.5796	615116	616792	1	615116	616792	615116	616690	SHE9	orf19.13218|IPF21389.1|IPF6829.2|Contig4-3045_0003|orf6.6630|CA4151|CaO19.13218|CaO19.5796	Protein with similarity to S. cerevisiae She9p, which inhibits growth when overproduced; gene has possible growth-regulation element; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	616909	618314	+	orf19.5793	616909	618314	1	616909	618314	616968	618203	PR26	orf19.13215|IPF21398.1|IPF6830.2|Contig4-3045_0002|orf6.6627|CA4150|CaO19.13215|RPT3|CaO19.5793	Protein with similarity to proteasomal 26S regulatory subunit of S. cerevisiae, H. sapiens, Methanobacterium thermoautotrophicum (Archaebacterium) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	618205	619816	-	orf19.5792	618205	619816	1	619816	618205	619788	618292	SMP3	orf19.13214|IPF21390.1|IPF6831.2|Contig4-3045_0001|orf6.6626|CA4149|CaO19.5792|CaO19.13214	Mannosyltransferase of glycosylphosphatidylinositol (GPI) biosynthesis; catalyzes mannosylation of Man3-GPI precursor; essential for viability; 8-9 transmembrane regions predicted; has HQEXRF motif; functional homolog of S. cerevisiae Smp3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	620864	622185	+	orf19.5791	620864	622185	1	620864	622185	620950	622059	IDH2	orf19.13213|orf6.6625|IPF6833.2|IPF27911.1|Contig4-2708_0009|CA4148|CaO19.5791	Protein described as isocitrate dehydrogenase subunit; transcription is upregulated in response to treatment with ciclopirox olamine; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	622069	623357	-	orf19.5789	622069	623357	1	623357	622069	623036	622218	ADE8	orf19.13211|IPF17327.2|IPF6835.1|Contig4-2708_0008|orf6.4861|orf6.6623|CA4147|CaO19.5789	Predicted enzyme of amino acid biosynthesis; upregulated in biofilm; S. cerevisiae ortholog is Gcn4p regulated; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	623561	626411	+	orf19.5788	623561	626411	2	623561|623796	623595|626411	623592	626320	EFT2	orf19.13210|IPF17326.3|IPF6840.1|EFT2-1|Contig4-2708_0006|orf6.4860|orf6.6622|CA2810	Elongation Factor 2 (eEF2); GTPase; essential; highly expressed; target of sordarin antifungals; antigenic in human, mouse; lacks site for regulatory phosphorylation by eEF2 kinase; GCN-regulated; complements S. cerevisiae eft1 eft2 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	627689	627864	+	ntar_341	627689	627864	1	627689	627864					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	628082	629291	+	orf19.5785	628082	629291	1	628082	629291	628280	629158		orf19.13207|IPF21409.1|IPF16515.2|Contig4-2708_0001|orf6.4857|CaO19.5785|CaO19.13207	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type; induced by nitric oxide; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	630688	632949	+	orf19.5784	630688	632949	1	630688	632949	630791	632920		orf19.13206|IPF11969.2|Contig4-2695_0010|orf6.4856|CA2809|CaO19.5784|AMO1|CaO19.13206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	633116	634071	+	orf19.5783	633116	634071	1	633116	634071	633143	633763		orf19.13205|IPF21418.1|IPF11966.2|Contig4-2695_0008|orf6.4855|CA2808|CaO19.5783|CaO19.13205|IPF11966	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	633819	636339	-	orf19.5782	633819	636339	1	636339	633819	636276	634021		orf19.13204|IPF21375.1|IPF11965.2|Contig4-2695_0007|orf6.4854|CA2807|CaO19.5782|CaO19.13204|IPF11965	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	636461	638737	-	orf19.5780	636461	638737	1	638737	636461	638608	636587		orf19.13202|IPF21380.1|IPF11702.2|Contig4-2695_0005|orf6.4852|CA2806|CaO19.13202|CaO19.5780|IPF11702	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	639257	642054	-	orf19.5779	639257	642054	1	642054	639257	642004	639440	RNR1	orf19.13201|orf6.4851|IPF21372.1|IPF11704.2|Contig4-2695_0002|Contig4-2973_0004|CA2805|CaO19.5779|CaO19.13201	Protein similar S. cerevisiae Rnr1p, large subunit of ribonucleotide reductase; expression greater in low iron; transposon mutation affects filamentous growth; farnesol upregulated in biofilm; regulated by cell cycle, tyrosol, cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	642827	643277	-	ntar_342	642827	643277	1	643277	642827					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	643399	644282	+	orf19.5777	643399	644282	1	643399	644282	643501	644211		orf19.13199|IPF21412.1|IPF19961.1|Contig4-2973_0002|orf6.4849|CA2804|CaO19.13199|CaO19.5777|IPF19961	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	644227	654222	-	orf19.5776	644227	654222	1	654222	644227	654222	644362	TOM1	orf19.13198|orf19.8529|orf19.8530|IPF21369.1|IPF11711.2|IPF26413.1|IPF26466.1|IPF18528.2|IPF4563.2|Contig4-3099_0044|Contig4-3099_0045|orf6.3949|orf6.3950|orf6.4848|CA2803|CA2169|CA2170|orf19.911|orf19.912|CaO19.13198|CaO19.5776|IPF11711	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	654708	654982	+	ntar_343	654708	654982	1	654708	654982	654824	654976			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	655482	656976	+	orf19.910	655482	656976	1	655482	656976	655606	656946		orf19.8528|IPF26426.1|IPF4558.1|Contig4-3099_0042|orf6.3948|CA2168|PRP3|CaO19.8528|CaO19.910|IPF4558	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	655546	655734	-	ntar_344	655546	655734	1	655734	655546	655728	655561			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	657141	657767	+	orf19.909.1	657141	657767	3	657141|657357|657600	657235|657505|657767	657188	657627			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	657854	658320	-	ntar_345	657854	658320	1	658320	657854					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	658915	660287	-	orf19.909	658915	660287	1	660287	658915	660121	658991	STP4	orf19.8527|IPF26436.1|IPF4553.2|Contig4-3099_0038|orf6.3947|CA2167|CaO19.8527|CaO19.909|IPF4553	Putative transcription factor with zinc finger DNA-binding motif; induced in core caspofungin response; shows colony morphology-related gene regulation by Ssn6p; induced by 17-beta-estradiol, ethynyl estradiol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	663080	663580	+	ntar_346	663080	663580	1	663080	663580					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	663495	664781	-	orf19.908	663495	664781	1	664781	663495	664628	663750	FEN12	orf19.8526|IPF18186.2|IPF4547.2|Contig4-3099_0035|orf6.3945|orf6.3946|orf6.7270|CA2166|orf19.907|FEN99|CaO19.908	Predicted ORF in Assemblies 19, 20 and 21; amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	665206	669700	-	orf19.906	665206	669700	1	669700	665206	669665	665520	ROM2	orf19.8525|IPF26481.1|IPF4544.1|Contig4-3099_0031|orf6.7271|CA4668|CaO19.906|CaO19.8525	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	670052	670252	+	ntar_347	670052	670252	1	670052	670252	670082	670252			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	672760	674206	+	orf19.905	672760	674206	1	672760	674206	672821	674143	AVT7	orf19.8524|IPF26427.1|IPF4537.1|Contig4-3099_0028|orf6.7272|CA4669|CaO19.8524|CaO19.905|IPF4537	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Avt7p; downregulated upon adherence to polystyrene; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	674314	675314	+	orf19.904	674314	675314	1	674314	675314	674364	675065		orf19.8523|IPF26452.1|IPF4536.1|Contig4-3099_0027|orf6.7273|CA4670|CaO19.904|CaO19.8523|IPF4536	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	675856	676725	+	orf19.903	675856	676725	1	675856	676725	675910	676656	GPM1	orf19.8522|IPF26449.1|IPF4535.2|GPM1-1|Contig4-3099_0022|orf6.7274|CA4671|CaO19.903|CaO19.8522	Surface protein that binds host complement Factor H and FHL-1; phosphoglycerate mutase; antigenic in murine, human infection; biofilm-, fluconazole-, or amino acid starvation (3-aminotriazole treatment) induced, farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	676992	679374	+	orf19.900	676992	679374	1	676992	679374	677135	679291		orf19.8519|IPF26399.1|IPF3659.2|Contig4-3099_0020|orf6.7277|CA4672|NSP1|CaO19.900|CaO19.8519|IPF3659	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	679574	680568	+	orf19.899	679574	680568	1	679574	680568	679664	680512		orf19.8518|IPF26445.1|IPF3661.2|Contig4-3099_0019|orf6.7278|CA4673|CaO19.899|CaO19.8518|IPF3661	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	680766	682194	+	orf19.898	680766	682194	1	680766	682194	681030	682055	HEM2	orf19.8517|orf6.8517|IPF26438.1|IPF3663.2|Contig4-3099_0017|orf6.7279|CA4674|CaO19.8517|CaO19.898	Protein described as porphobilinogen synthase; transcriptionally regulated by iron; expression greater in high iron; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	680970	681151	-	ntar_348	680970	681151	1	681151	680970					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	681531	681849	-	ntar_349	681531	681849	1	681849	681531					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	682047	683030	-	orf19.897	682047	683030	1	683030	682047	682866	682216		orf19.8516|IPF26446.1|IPF3664.2|Contig4-3099_0016|orf6.7280|CA4675|CaO19.897|CaO19.8516|IPF3664	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	684001	691486	+	orf19.896	684001	691486	1	684001	691486	684001	691416	CHK1	orf19.8515|orf6.7978|HK1|IPF26451.1|IPF3668.2|Contig4-3099_0013|Contig4-3099_0015|orf6.7281|CA4676|CaO19.8515|CaO19.896	Histidine kinase involved in a two-component signaling pathway that regulates cell wall biosynthesis; disruption impairs hyphal development and decreases virulence in mouse intravenous (but not rat vaginal) infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	684022	684317	-	ntar_350	684022	684317	1	684317	684022	684180	684022			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	684595	684792	-	ntar_351	684595	684792	1	684792	684595					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	691404	692948	-	orf19.895	691404	692948	1	692948	691404	692680	691547	HOG1	orf19.8514|IPF26431.1|IPF3669.2|Contig4-3099_0012|orf6.7282|CA4677|CaO19.8514|CaO19.895	MAP kinase of osmotic-, heavy metal-, and core stress response; role in regulation of glycerol, D-arabitol in response to stress; phosphorylated in response to H2O2 (Ssk1p-dependent) or NaCl; mutant induces protective mouse immune response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	693076	695527	+	orf19.894	693076	695527	1	693076	695527	693076	695166		orf19.8513|IPF26401.1|IPF3670.2|Contig4-3099_0008|Contig4-3099_0010|orf6.7283|CA4678|RGP1|CaO19.8513|CaO19.894|IPF3670	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	695656	697658	+	orf19.893	695656	697658	1	695656	697658	695838	697511	PGA17	orf19.8512|IPF26415.1|IPF3674.2|Contig4-3099_0006|orf6.7284|CA4679|CaO19.8512|CaO19.893|IPF3674	Putative GPI-anchored protein of unknown function; exogenously expressed protein is a substrate for Kex2p processing in vitro; transcription is repressed in response to alpha pheromone in SpiderM medium; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	698160	700749	+	orf19.891	698160	700749	1	698160	700749	698222	700558		orf19.8510|IPF26387.1|IPF3677.1|Contig4-3099_0004|orf6.7286|CA4680|AMD1|CaO19.891|CaO19.8510	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	700893	702539	+	orf19.889	700893	702539	1	700893	702539	700893	702539	THI20	orf19.8508|IPF26412.1|IPF3679.2|Contig4-3099_0003|orf6.7288|CA4681|CaO19.8508|CaO19.889|IPF3679	Putative phosphomethylpyrimidine kinase; also described as a putative transcription factor with TENA DNA-binding motif; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	702305	702535	-	ntar_352	702305	702535	1	702535	702305	702535	702392			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	702743	707164	+	orf19.886	702743	707164	1	702743	707164	702830	707023	PAN1	orf19.8505|IPF26482.1|IPF3687.2|Contig4-3099_0002|orf6.7292|CA4682|CaO19.8505|CaO19.886|IPF3687	Essential protein involved in endocytosis and polarized growth; similar to <i>S. cerevisiae</i> Pan1p, which is a part of a complex that regulates actin cytoskeleton [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	707072	709855	-	orf19.882	707072	709855	1	709855	707072	709618	707180	HSP78	orf19.8501|orf19.8503|IPF26442.1|IPF26425.1|IPF9007.2|IPF9010.2|Contig4-2772_0009|Contig4-2772_0010|orf6.7293|orf6.7295|CA4684|CA4683|orf19.884|HSP78.5f	Protein described as a heat-shock protein; transcriptionally regulated by macrophage response; transcription is regulated by Nrg1p, Mig1p, Gcn2p, Gcn4p, Mnl1p; heavy metal (cadmium) stress-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	709950	712259	-	orf19.881	709950	712259	1	712259	709950	711992	710277	DFG16	orf19.8500|IPF9013|IPF18185.2|IPF9013.2|Contig4-2772_0008|orf6.7296|CA4685|CaO19.8500|CaO19.881	Protein of the Rim101p pathway that regulates filamentation in response to alkaline pH; required for host tissue invasion during infection; similar to S. cerevisiae Dfg16p that acts in Rim101p processing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	712629	715967	+	orf19.880	712629	715967	1	712629	715967	712772	715804		orf19.8499|IPF26508.1|IPF9015.2|Contig4-2772_0004|Contig4-2772_0005|orf6.7297|CA4686|CaO19.880|SFB3|CaO19.8499|IPF9015	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	715751	718245	-	orf19.879	715751	718245	1	718245	715751	718203	715876		orf19.8498|IPF26393.1|IPF9017.2|Contig4-2772_0003|orf6.7298|CA4687|SHE4|CaO19.8498|CaO19.879|IPF9017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	718327	719319	+	orf19.878	718327	719319	1	718327	719319	718377	719273	NBN1	orf19.8497|IPF26440.1|IPF9018.2|Contig4-2772_0001|orf6.7299|CA4688|YNG2|CaO19.878|CaO19.8497	Subunit of the NuA4 histone acetyltransferase complex; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	719592	720473	+	orf19.876	719592	720473	1	719592	720473	719652	720392	PGA33	orf19.8495|IPF9020.2|IPF29660.1|Contig4-2937_0001|orf6.7301|CA4689|CaO19.876|IPF9020	Putative GPI-anchored protein of unknown function; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	720723	722076	+	orf19.875	720723	722076	1	720723	722076	720723	721982		orf19.8494|IPF3959.2|IPF29654.1|Contig4-2937_0004|orf6.7302|CA4690|CaO19.875|IPF3959	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	721930	723253	-	orf19.874	721930	723253	1	723253	721930	723193	722087		orf19.8493|IPF26430.1|IPF3958.1|Contig4-2937_0005|orf6.7303|CA4691|CaO19.874|CaO19.8493|IPF3958	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	723575	724554	-	orf19.873.1	723575	724554	2	724554|724098	724175|723575	724341	723813	COX6	IPF26503.1|IPF26395.1|IPF3955.2|IPF3954.2|Contig4-2937_0006|COX6.3	Flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	724957	725316	-	orf19.873	724957	725316	1	725316	724957	725316	724957		orf19.8492|IPF26486.1|IPF29678.1|Contig4-2937_0011|orf6.7304|CaO19.8492|CaO19.873	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	725313	726730	-	orf19.872	725313	726730	1	726730	725313	726593	725313		orf19.8491|IPF26423.1|IPF3952.1|Contig4-2937_0012|orf6.7305|CA4693|CaO19.872|SFP1|CaO19.8491|IPF3952	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	728216	731678	+	orf19.871	728216	731678	1	728216	731678	728433	731492		orf19.8490|IPF3950.2|IPF29698.1|Contig4-2937_0019|orf6.2459|orf6.7306|CA4694|LST4|CaO19.871|IPF3950	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	731991	732127	+	ntar_353	731991	732127	1	731991	732127	731991	732119			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	740206	740658	+	ntar_354	740206	740658	1	740206	740658	740362	740484			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	740632	742717	-	orf19.868	740632	742717	1	742717	740632	742466	740829	ADAEC	orf19.8487|IPF3937.2|IPF3935.3|Contig4-2634_0003|orf6.2588|orf6.72|CA1203|CaO19.868|IPF3937	Transcription is specific to white cell type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	747165	749044	+	orf19.867	747165	749044	1	747165	749044	747283	748896		orf19.8486|IPF14524.2|IPF17850.2|Contig4-2449_0003|orf6.2589|orf6.3547|orf6.567|CA1204|CaO19.867|IPF14524	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	749592	751861	+	orf19.866	749592	751861	1	749592	751861	749879	751801	RAD32	orf19.8485|IPF14521.2|IPF15212.1|Contig4-2942_0014|orf6.2590|orf6.3548|CA1861|RAD30|CaO19.866	Protein similar to S. cerevisiae protein with role in nucleotide excision repair; down-regulation associated with azole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	751046	755100	-	orf19.864	751046	755100	1	755100	751046	755005	751901		orf19.8483|IPF26501.1|IPF7641.2|Contig4-2942_0012|Contig4-2942_0013|orf6.3550|CA1862|NMD2|CaO19.864|CaO19.8483	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	755197	756484	-	orf19.863	755197	756484	1	756484	755197	756454	755318		orf19.8482|IPF26428.1|IPF7643.1|Contig4-2942_0011|orf6.3551|CA1863|CaO19.863|MRPL35|CaO19.8482	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	756651	757622	-	orf19.862	756651	757622	1	757622	756651	757498	756788		orf19.8481|IPF26453.1|IPF7644.2|Contig4-2942_0009|orf6.3552|CA1864|CaO19.862|CaO19.8481|IPF7644	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	757676	758095	+	ntar_355	757676	758095	1	757676	758095	757802	758041			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	757944	759063	-	orf19.861	757944	759063	1	759063	757944	758733	758203		orf19.8480|IPF26462.1|IPF7646.2|Contig4-2942_0008|orf6.3553|CA1865|CaO19.8480|CaO19.861|IPF7646	Predicted transcriptional regulator with bZip domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	759478	761991	+	orf19.860	759478	761991	1	759478	761991	759544	761628	BMT8	orf19.8479|IPF17595.2|IPF7647.2|Contig4-2942_0006|orf6.1229|orf6.3554|CA1866|CaO19.860|WRY3|IPF7647	Putative beta-mannosyltransferase, member of a 9-gene family that includes characterized genes BMT1, BMT2, BMT3, and BMT4 with roles in beta-1,2-mannosylation of cell wall phosphopeptidomannan; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	763170	765270	+	orf19.857	763170	765270	1	763170	765270	763501	765159	FMO2	orf19.8477|IPF18598.2|IPF18599.1|Contig4-2942_0002|orf6.1227|orf6.3555|CA6181|CA1867|orf19.859|IFK3.3f|CA0374|IFK3|IPF7651.2	Predicted ORF in Assemblies 19, 20 and 21; expression regulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	766053	766194	-	ntar_356	766053	766194	1	766194	766053					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	766380	768321	+	orf19.856	766380	768321	1	766380	768321	766651	768309	IFK2	orf19.8476|IPF26414.1|IPF11973.1|Contig4-2541_0011|orf6.1905|orf6.3556|CA0775|FMO3|CaO19.856|CA0373|IPF7655.5eoc|IPF7655.2	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	768528	769277	+	orf19.855	768528	769277	1	768528	769277	768528	769277			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	769641	771404	+	orf19.854	769641	771404	1	769641	771404	769797	771101	UGA11	orf19.8474|IPF26422.1|IPF26397.1|IPF11975.1|IPF11976.1|Contig4-2541_0008|orf6.1903|CA0773|orf19.853.3|UGA11.5f|UGA11.exon1	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene; overlaps orf19.854.1, which is a region annotated as a blocked reading frame [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	771813	771884	+	te(cuc)1	771813	771884	1	771813	771884				tE(CUC)1.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	773165	774423	+	orf19.853	773165	774423	1	773165	774423	773182	774273	SAP99	orf19.8473|orf6.1902|IPF26434.1|IPF11977.3|Contig4-2541_0002|CA0771|CaO19.853|IPF11977|IPF11977.2	Putative secreted aspartyl protease; possible Kex2p substrate; transcriptionally regulated by iron; expression greater in low iron; repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	775114	776741	+	orf19.852	775114	776741	1	775114	776741	775519	776613	SAP98	orf19.8472|IPF26435.1|IPF14031.2|Contig4-2545_0002|orf6.1542|CA0549|CaO19.852|IPF14031|IPF14031.1	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; expressed in opaque MTLa/MTLa cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	776681	779482	-	orf19.851	776681	779482	1	779482	776681	779482	776966		orf19.8471|orf6.1543|IPF26385.1|IPF14030.2|Contig4-2545_0003|Contig4-2545_0006|CA0550|MNN42|CaO19.8471|CaO19.851|IPF14030	Protein of unknown function; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	782160	783852	+	orf19.850	782160	783852	1	782160	783852	782312	783436		orf19.8470|IPF14821.1|IPF29657.1|Contig4-2545_0010|orf6.1044|CA0275|CaO19.850|NTA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	785985	788531	+	orf19.849	785985	788531	1	785985	788531	785985	788531		orf19.8469|IPF19106.2|IPF19522.1|orf6.1043|orf6.900|orf6.3745|MNN4|CA0217|MNN41|CaO19.849	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	789616	789939	+	orf19.848	789616	789939	1	789616	789939	789616	789939			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	790263	790335	+	tr(ucu)2	790263	790335	1	790263	790335				tR(UCU)2.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	790342	790429	+	tf(gaa)2	790342	790429	2	790342|790394	790378|790429				tF(GAA)2.2	tRNA-Phe predicted by tRNAscan-SE; has atypical tertiary T15A48 basepair (rather than R15Y48 basepair) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	791026	792374	+	orf19.847	791026	792374	1	791026	792374	791079	792167	YIM1	orf19.8467|IPF3415.2|IPF29656.1|IPF3415|Contig4-2477_0005|orf6.3747|CA2016|CaO19.847|CaO19.8467	Protein similar to protease of mitochondrial inner membrane; increased transcription is observed upon benomyl treatment; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	792299	795434	-	orf19.846	792299	795434	1	795434	792299	795282	792391		orf19.8466|IPF26381.1|IPF3414.2|Contig4-2477_0006|Contig4-2729_0002|orf6.3748|CA2017|CaO19.8466|CaO19.846|IPF3414	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	795625	798374	-	orf19.844	795625	798374	1	798374	795625	798201	795727	STE11	orf19.8464|IPF26388.1|IPF3412.2|Contig4-2729_0006|orf6.3750|CA2018|CaO19.844|CaO19.8464	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ste11p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	798530	800894	-	orf19.843	798530	800894	1	800894	798530	800845	798659		orf19.8463|IPF3409.2|IPF29645.1|Contig4-2729_0007|orf6.3751|CA2019|CaO19.8463|CaO19.843|IPF3409	Putative DNA repair exonuclease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	801054	801628	-	orf19.842	801054	801628	1	801628	801054	801591	801181	ASR3	orf19.8462|IPF16901.1|IPF3408.3|Contig4-2729_0008|orf6.3752|orf6.3853|CA2020|CaO19.842|IPF16901	Gene regulated by cAMP and by osmotic stress; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	801949	804164	-	orf19.841	801949	804164	1	804164	801949	804110	802020		orf19.8461|IPF26400.1|IPF3406.3|Contig4-2739_0006|orf6.3753|orf6.3852|CA2093|CaO19.841|IPF3406|IPF3406.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	804324	805395	-	orf19.840	804324	805395	2	805395|804973	805304|804324	805314	804502	RPL21A	orf19.8460|IPF19037.2|IPF3404.2|Contig4-2739_0007|orf6.1127|orf6.3851|CA2092|RPL21A.3	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	805606	806906	-	orf19.838.1	805606	806906	2	806906|806362	806851|805606	806857	805800	RPS9B	IPF3402.2|IPF29662.1|Contig4-2739_0010|orf6.1126|CA0322	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	807083	809054	+	orf19.839	807083	809054	1	807083	809054	807091	809031		orf19.8458|IPF16075.2|IPF3401.1|Contig4-2676_0017|Contig4-2676_0019|Contig4-2739_0012|orf6.1125|orf6.3850|CA2091|CaO19.839|IPF3401	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant; mutation confers hypersensitivity to aureobasidin A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	809036	809787	-	orf19.837.1	809036	809787	2	809787|809423	809508|809036	809639	809163	INO4		Transcriptional activator that may be involved in regulation of ribosomal protein genes; forms a heterodimer with Ino2p; related to <i>S. cerevisiae</i> Ino4p; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	810413	810485	+	tr(ucu)3	810413	810485	1	810413	810485				tR(UCU)3.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	810492	810579	+	tf(gaa)3	810492	810579	2	810492|810544	810528|810579				tF(GAA)3.2	tRNA-Phe predicted by tRNAscan-SE; has atypical tertiary T15A48 basepair (rather than R15Y48 basepair) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	810814	811735	+	orf19.837	810814	811735	1	810814	811735	811096	811545	GNA1	orf19.8457|IPF26470.1|IPF3395.2|Contig4-2676_0011|orf6.3848|CA2089|CaO19.837|CaO19.8457	Glucosamine-6-phosphate acetyltransferase; enzyme of UDP-GlcNAc biosynthesis; required for viability in absence of GlcNAc supplementation; required for persistent infection and wild-type virulence in mouse systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	811191	812299	-	orf19.836.1	811191	812299	4	812299|812048|811817|811712	812121|811902|811785|811191	812147	811695		IPF26402.1|IPF3394.2|CA2088|IPF3394	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	812313	813740	+	orf19.836	812313	813740	1	812313	813740	812380	813492		orf19.8456|orf6.3847|IPF26429.1|IPF3393.2|Contig4-2676_0008|CA2087|CaO19.8456|CaO19.836|IPF3393	Protein likely to be essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	813422	816080	-	orf19.835	813422	816080	1	816080	813422	815909	813549		orf19.8455|IPF26392.1|IPF3392.2|Contig4-2676_0003|Contig4-2676_0006|orf6.3846|CA2086|CaO19.8455|CaO19.835|IPF3392	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	816304	819003	-	orf19.834	816304	819003	1	819003	816304	818868	816340		orf19.8454|IPF26384.1|IPF3388.2|Contig4-2676_0001|orf6.3845|CA2085|CaO19.8454|CaO19.834|IPF3388	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	819163	822665	-	orf19.832	819163	822665	1	822665	819163	822416	819369	GPI13	orf19.8452|orf19.8453|IPF26461.1|IPF16059.3|IPF3385.1|IPF3384.1|Contig4-2493_0001|Contig4-2493_0002|orf6.3843|orf6.3844|orf6.6723|CA2083|CA2084|orf19.833|IPF3384.5f	Protein of major facilitator superfamily; has phosphodiesterase/nucleotide pyrophosphatase domain; similar to S. cerevisiae Gpi13p, which acts in GPI anchor biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	822937	824690	-	orf19.831	822937	824690	1	824690	822937	824624	823077		orf19.8451|IPF26420.1|IPF16057.2|Contig4-2493_0006|orf6.6722|CA4228|CaO19.831|CaO19.8451|IPF16057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	823477	823741	+	ntar_357	823477	823741	1	823477	823741	823477	823644			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	825226	828104	-	orf19.829	825226	828104	1	828104	825226	827890	825527	SCH9	orf19.8449|IPF26391.1|IPF13426.2|Contig4-2493_0008|Contig4-2913_0014|orf6.6720|CA4227|CaO19.8449|CaO19.829	Protein required for chlamydospore formation and for embedded hyphal growth, not essential for viability; similar to S. cerevisiae Sch9p, which is a protein kinase involved in growth control [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	830475	831383	+	orf19.828	830475	831383	1	830475	831383	830516	831313		orf19.8448|IPF26441.1|IPF8752.2|Contig4-2913_0009|orf6.6719|CA4226|MRPL24|CaO19.8448|CaO19.828|IPF8752	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	830973	831378	-	ntar_358	830973	831378	1	831378	830973	831378	831232			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	831628	832679	+	orf19.827.1	831628	832679	2	831628|832122	831696|832679	831684	832408	RPL39	IPF26380.1|IPF8753.2|Contig4-2913_0008|CA4225|RPL39.3	Ribosomal protein L39; transcription is induced upon germ tube formation; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	832702	834487	+	orf19.827	832702	834487	2	832702|833507	833425|834487	832828	833565		orf19.8447|IPF26456.1|IPF8755.2|Contig4-2913_0007|orf6.6718|CA4224|CaO19.827|CaO19.8447|IPF8755	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	834005	836034	-	orf19.826	834005	836034	1	836034	834005	835946	834090		orf19.8446|IPF26408.1|IPF8757.2|Contig4-2913_0006|orf6.6717|CA4223|CaO19.8446|CaO19.826|IPF8757	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	836113	837425	+	orf19.825	836113	837425	1	836113	837425	836207	837304	GCD7	orf19.8445|IPF26437.1|IPF8759.2|Contig4-2913_0005|orf6.6716|CA4222|CaO19.8445|CaO19.825	Protein described as a translation initiator; downregulated in the presence of human whole blood or polymorphonuclear (PMN) cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	837333	838001	-	orf19.823	837333	838001	1	838001	837333	838001	837333		orf19.8443|IPF26454.1|IPF8760.2|Contig4-2913_0004|orf6.6714|CA4221|CaO19.823|CaO19.8443|IPF8760	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	838164	838760	-	orf19.822	838164	838760	1	838760	838164	838760	838191		orf19.8442|IPF26460.1|IPF8762.2|Contig4-2913_0002|orf6.6713|CA4220|CaO19.822|CaO19.8442|IPF8762	Protein detected in some, not all, biofilm extracts; fluconazole-downregulated; greater mRNA abundance observed in cyr1 or ras1 homozygous null mutant than in wild type; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	838971	840416	-	orf19.820	838971	840416	1	840416	838971	840282	839158	SDS22	orf19.8440|IPF26433.1|IPF8765.2|Contig4-2913_0001|orf6.6711|CA4219|CaO19.820|CaO19.8440	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	840427	841198	-	orf19.819	840427	841198	1	841198	840427	841148	840816		orf19.8439|IPF26496.1|IPF8766.2|orf6.6710|CA4218|CaO19.8439|ACP11|CaO19.819|ACP1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	841363	846741	-	orf19.816	841363	846741	1	846741	841363	846741	841435	DCK2	orf19.8436|IPF26463.1|IPF5809.2|orf6.6707|YLR422W-2|CA4217|CaO19.8436|CaO19.816|IPF5809	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ylr422wp; transposon mutation affects filamentous growth; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	847468	853447	-	orf19.815	847468	853447	1	853447	847468	853403	847659	DCK1	orf19.8435|IPF5806.2|IPF29663.1|Contig4-2714_0002|Contig4-2714_0003|orf6.45|orf6.6706|YLR422W|CA4216|CaO19.8435|CaO19.815|IPF5806	Putative guanine nucleotide exchange factor required for embedded filamentous growth; activates Rac1p; contains a DOCKER domain; similar to adjacent DCK2 and to S. cerevisiae Ylr422wp; regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	854355	854631	+	ntar_359	854355	854631	1	854355	854631					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	854615	857549	-	orf19.814	854615	857549	1	857549	854615	857429	854787	SSY1	orf19.8434|CSY1|IPF5802.2|IPF29641.1|IPF29694.1|Contig4-2714_0007|orf6.6705|SSY1.5|CA4215|orf19.814.3|CaO19.814	Amino acid sensor, required for wild-type hyphal growth on solid serum or Lees media, but not for hyphal growth under all conditions; similar to S. cerevisiae Ssy1p aa sensor and to aa permeases; 12 predicted membrane spanning regions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	857832	858046	-	snrnau2	857832	858046	1	858046	857832					Highly conserved U2 small nuclear RNA involved in splicing; ortholog of S. cerevisiae LSR1 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	858640	860858	+	orf19.813	858640	860858	1	858640	860858	858692	860770		orf19.8433|IPF26404.1|IPF5799.1|Contig4-2861_0006|orf6.6704|YLR106|CA6180|CaO19.8433|CaO19.813|IPF26404	Predicted ORF in Assemblies 19, 20 and 21; not essential for viability; oxidative stress-induced via Cap1p; similar to S. cerevisiae Vhs3p, which is a putative phosphopantothenoylcysteine decarboxylase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	861107	862480	+	orf19.812	861107	862480	1	861107	862480	861107	862480			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	862641	863981	+	orf19.811	862641	863981	1	862641	863981	862641	863777		orf19.8431|IPF5795|IPF26432.1|IPF5795.2|Contig4-2861_0003|orf6.6702|CA4213|CaO19.811|CaO19.8431	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	863809	864082	-	ntar_360	863809	864082	1	864082	863809					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	864311	868181	+	orf19.810	864311	868181	2	864311|864430	864368|868181	864311	868115		orf19.8430|IPF26490.1|IPF5050.2|Contig4-2861_0001|orf6.6701|CA4212|CaO19.810|HFM1|CaO19.8430	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=D]
Ca21chr2	866822	867576	-	ntar_361	866822	867576	1	867576	866822	867031	866822			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	868073	869681	-	orf19.809	868073	869681	1	869681	868073	869597	868233		orf19.8429|IPF26424.1|IPF5051.2|Contig4-2266_0004|orf6.6700|CA4211|CaO19.809|NOP12|CaO19.8429|IPF5052	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	870374	872769	+	orf19.808	870374	872769	1	870374	872769	870747	872579		orf19.8428|IPF18239.1|IPF5056.3|Contig4-2266_0001|Contig4-2544_0011|orf6.2543|orf6.6699|orf6.6698|CA4209|DEP1|CaO19.808|CA4210|DEP1.5f|IPF18238.1|DEP1.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	872991	874901	+	orf19.807	872991	874901	1	872991	874901	873052	874740	CHS5	orf19.8426|IPF19407.2|IPF5058.1|Contig4-2544_0010|orf6.173|orf6.2544|CA1176|CaO19.807|CA4208|CHS5.5eoc|IPF18240.1	Putative chitin biosynthesis protein; fungal-specific (no human or murine homolog); transcription decreases upon yeast-to-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	874743	875462	-	orf19.806	874743	875462	1	875462	874743	875340	874972	VMA7	orf19.8424|IPF5059.3|IPF5061.1|Contig4-2544_0008|orf6.175|orf6.2545|CA1177|CaO19.806	Putative subunit of the V-ATPase complex, which is involved in control of vacuolar pH; highly similar to S. cerevisiae Vma7p; interacts with phosphatidylinositol 3-kinase Vps34p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	875595	876659	+	orf19.805	875595	876659	1	875595	876659	875646	876503		orf19.8423|IPF26444.1|IPF5062.1|Contig4-2544_0007|orf6.2546|CA1178|CaO19.805|IPF5062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	876388	877043	-	orf19.804.1	876388	877043	1	877043	876388	876989	876759			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	877165	878339	-	orf19.804	877165	878339	1	878339	877165	878202	877222		orf19.8422|IPF26439.1|IPF5064.2|Contig4-2544_0004|orf6.2547|CA1179|CaO19.804|CaO19.8422|IPF5064	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	878586	880131	-	orf19.802	878586	880131	1	880131	878586	880090	878675	UGA1	orf19.8421|IPF5067.2|IPF19652.1|IPF19651.1|Contig4-2544_0002|orf6.1355|orf6.2549|orf6.2548|CA1181|CA1180|orf19.803|UGA12.5f	Protein described as GABA transaminase; transcription regulated by Mig1p and Tup1p; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	880839	883648	+	orf19.801	880839	883648	1	880839	883648	880878	883538	TBF1	orf19.8420|IPF5070.2|IPF19724.1|Contig4-2905_0023|orf6.1354|orf6.2550|CA1182|CaO19.801|IPF19724	Essential transcriptional activator that binds to a conserved sequence at ribosomal protein genes and the rDNA locus; acts with Cbf1p at a subset of promoters; biological role is analogous to that of S. cerevisiae Rap1p, not to S.c. Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	883898	884149	-	ntar_362	883898	884149	1	884149	883898					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	883980	884163	+	ntar_363	883980	884163	1	883980	884163					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	884311	886207	+	orf19.799	884311	886207	1	884311	886207	884534	885907	STE4	orf19.8419|IPF19618.2|IPF29653.1|Contig4-2905_0020|orf6.1139|orf6.1353|CA0438|CaO19.799|STE4.5eoc|IPF19618.1	Beta subunit of heterotrimeric G protein of mating signal transduction pathway; required for mating; transcription is specific to cells homozygous at MTL and is induced by alpha pheromone; similar to S. cerevisiae Ste4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	884493	885497	-	ntar_364	884493	885497	1	885497	884493	885254	885129			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	885604	885901	-	ntar_365	885604	885901	1	885901	885604					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	886008	887690	-	orf19.798	886008	887690	2	887690|886962	887081|886008	887089	886180	TAF14	orf19.8418|IPF26447.1|IPF5074.1|Contig4-2905_0019|orf6.1138|CA0331|ANC1|CaO19.8418|CaO19.798	Putative DNA-binding transcription factor; putative TFIIF subunit; macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	887743	889227	+	orf19.797	887743	889227	1	887743	889227	887895	889076	BAT21	orf19.8417|IPF19656.1|IPF5075.1|Contig4-2905_0017|orf6.1137|orf6.2997|orf6.2998|CA0330|CaO19.797|BAT2	Protein described as a branched chain amino acid aminotransferase; regulated by Gcn4p, Gcn2p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	889067	890538	-	orf19.796	889067	890538	1	890538	889067	890223	889210	HYM1	orf19.8415|IPF17942.2|IPF5076.1|Contig4-2905_0016|orf6.1136|orf6.2996|CA1470|CaO19.796|IPF17942	Mo25 family domain protein of RAM cell wall integrity signaling network; role in cell separation, azole sensitivity; required for hyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	890713	892905	+	orf19.795	890713	892905	1	890713	892905	890821	892818	VPS36	orf19.8414|IPF5078.2|IPF19036.2|Contig4-2905_0015|orf6.1135|orf6.2995|CA1469|CaO19.795|IPF5078	Protein involved in proteolytic activation of Rim101p, which regulates pH response; role in uptake of Histatin-5 into vacuole; similar to S. cerevisiae Vps36p, which is a member of the ESCRT II protein sorting complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	893084	895089	+	orf19.794	893084	895089	1	893084	895089	893154	894980		orf19.8413|IPF26407.1|IPF5080.2|Contig4-2905_0013|orf6.2994|CA1468|SSN3|CaO19.794|CaO19.8413|SRB10	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	895141	896455	+	orf19.793	895141	896455	1	895141	896455	895179	896198	CAK1	orf19.8412|IPF5082.2|IPF29659.1|Contig4-2905_0010|orf6.2993|CA1467|CaO19.793|IPF5082	Monomeric CDK-activating kinase (CAK); functional homolog of S. cerevisiae Cak1p; phosphorylates cyclin-free human CDK2; lacks glycine loop motif; conserved lysine (K36) not required for activity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	897756	900981	+	orf19.792	897756	900981	2	897756|899561	898775|900981	897896	900774		orf19.8411|IPF19058.1|IPF13324.1|IPF29658.1|Contig4-2905_0005|orf6.2992|orf6.1072|CA1466|orf19.1594|CaO19.8411|CaO19.792|IPF13324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=F]
Ca21chr2	898887	899116	+	ntar_366	898887	899116	1	898887	899116	898887	899081			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	899222	900774	+	orf19.791	899222	900774	1	899222	900774	899545	900774	RIM11	orf19.8410|IPF13327.2|IPF26457.1|IPF18668.1|Contig4-2905_0001|orf6.2991|orf6.1071|CA1465|orf19.1593|CaO19.791|RIM111|CaO19.8410	Protein not essential for viability; similar to S. cerevisiae Rim11p, which is a protein kinase involved in meiosis and sporulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	900819	901888	-	orf19.1592	900819	901888	1	901888	900819	901795	901037		IPF13328.2|orf6.1070|CA0291|CaO19.1592|IPF13328	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	902528	903973	+	orf19.1591	902528	903973	1	902528	903973	902615	903823	ERG10	IPF13331.2|POT14|orf6.1069|CA0290|CaO19.1591	Protein similar to acetyl-CoA acetyltransferase; role in ergosterol biosynthesis; soluble in hyphae; changes in protein abundance associated with azole resistance; fluconazole or ketoconazole induced; macrophage-downregulated protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	904030	905822	+	orf19.1590	904030	905822	1	904030	905822	904041	905822		IPF13333.3|orf6.1068|CA0289|CaO19.1590|IPF13333|IPF13333.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	905790	907140	-	orf19.4521	905790	907140	1	907140	905790	906971	905961		orf19.11996|IPF22746.1|IPF15523.2|Contig4-2054_0005|orf6.4990|CA2906|CaO19.4521|CaO19.11996|IPF15523	Predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	907391	907882	+	ntar_367	907391	907882	1	907391	907882	907760	907882			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	907588	908450	-	orf19.4520	907588	908450	1	908450	907588	908353	907778		orf19.11995|IPF22752.1|IPF15525.1|Contig4-2054_0003|orf6.4991|CA2907|CaO19.11995|CaO19.4520|IPF15525	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	908670	911048	-	orf19.4519	908670	911048	1	911048	908670	910930	908768	SUV3	orf19.11994|IPF22739.1|IPF15527.2|orf6.4992|CA2908|CaO19.4519|CaO19.11994	Protein required for chlamydospore formation, for embedded hyphal growth, and for wild-type respiratory growth; similar to S. cerevisiae Suv3p, which is an RNA helicase involved in mitochondrial RNA catabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	911479	914528	+	orf19.4518	911479	914528	1	911479	914528	911560	914463		orf19.11993|IPF11424|IPF22738.1|IPF11424.1|Contig4-2521_0003|Contig4-2521_0005|Contig4-2521_0006|orf6.4993|CA2909|CaO19.4518|CaO19.11993	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	914757	916193	+	orf19.4517	914757	916193	1	914757	916193	914828	916060		orf19.11992|IPF22745.1|IPF11421.1|Contig4-2521_0007|orf6.4994|CA2910|CaO19.11992|CaO19.4517|IPF11421	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	916006	917736	-	orf19.4516	916006	917736	1	917736	916006	917707	916163		orf19.11991|IPF11207.3|IPF11419.2|Contig4-2521_0008|orf6.391|orf6.4995|CA2911|MET7|CaO19.4516	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	917843	919597	+	orf19.4515	917843	919597	1	917843	919597	918785	919528		orf19.11990|IPF11417.1|IPF11206.1|Contig4-2521_0010|orf6.392|orf6.4996|CA2912|CIS303|CaO19.4515|IPF11206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	920182	922415	+	orf19.4513	920182	922415	1	920182	922415	920896	922086		orf19.11988|IPF11204.3|IPF11205.2|Contig4-2894_0002|orf6.280|orf6.4998|CA2913|CaO19.4513|IPF11205	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	922591	924837	+	orf19.4511	922591	924837	1	922591	924837	922654	924717		orf19.11987|IPF19361.2|IPF11201.1|Contig4-2894_0006|Contig4-2894_0007|orf6.281|orf6.5000|orf6.4999|CA2915|CA2914|orf19.4512|IFA17.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	925655	927688	+	orf19.4510	925655	927688	1	925655	927688	925655	927688	IFA4	orf19.11986|IPF22740.1|IPF11199.2|Contig4-2894_0009|orf6.5001|CA2916|CaO19.11986|LPF29|CaO19.4510	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	928713	929033	+	orf19.4509	928713	929033	1	928713	929033	928713	929033		orf19.11985|IPF22762.1|IPF16177.2|Contig4-2894_0010|orf6.5002|CA2917|LPF28|CaO19.11985|CaO19.4509|IFA18.5f|IPF16173.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	929054	929727	+	orf19.4508	929054	929727	1	929054	929727	929080	929727		orf19.11984|IPF22750.1|IPF16174.2|Contig4-2894_0011|orf6.5003|CA2918|CaO19.4508|LPF27|CaO19.11984|IFA18.53f|IPF16173.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	929933	930837	+	orf19.4507	929933	930837	1	929933	930837	930016	930831		orf19.11983|IPF22749.1|IPF16173.2|Contig4-2894_0012|orf6.5004|CA2919|LPF26|CaO19.11983|CaO19.4507|IFA18.3f|IFA18.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	930829	931582	-	ntar_368	930829	931582	1	931582	930829					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	932015	933487	+	orf19.4506	932015	933487	1	932015	933487	932070	933323	LYS22	orf19.11982|IPF18482.1|IPF15851.2|Contig4-2894_0013|orf6.4198|orf6.5005|CA2335|CaO19.4506|LYS211|LYS21	Putative homocitrate synthase; fungal-specific (no human or murine homolog); repressed by nitric oxide; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	935072	935335	-	ntar_369	935072	935335	1	935335	935072					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	935362	936551	+	orf19.4505	935362	936551	1	935362	936551	935624	936472	ADH3	orf19.11981|IPF4795.1|IPF28369.1|Contig4-2894_0019|Contig4-2894_0020|CA2334|SAD3|CaO19.4505|ADH3.3f|orf6.4197	Expression is regulated upon white-opaque switching; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	935652	936425	-	ntar_370	935652	936425	1	936425	935652	936130	935993			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	937472	938664	+	orf19.4504	937472	938664	1	937472	938664	937567	938616		orf19.11980|IPF4794.1|IPF28368.1|orf6.4196|CA2333|SAD2|CaO19.4504|ADH4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	937811	938274	-	ntar_371	937811	938274	1	938274	937811	938274	938116			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	938793	939613	+	orf19.4503	938793	939613	1	938793	939613	938829	939506		orf19.11979|IPF4792.1|IPF28370.1|Contig4-2993_0022|orf6.4195|CA2332|CaO19.4503|IPF4792	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	940531	946556	+	orf19.4502	940531	946556	1	940531	946556	940777	946524		orf19.11978|IPF22754.1|IPF4789.2|Contig4-2993_0016|orf6.4194|CA2331|CaO19.4502|MOT1|CaO19.11978	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	946848	948355	+	orf19.4499	946848	948355	1	946848	948355	947031	948230	RIM2	orf19.11975|IPF22747.1|IPF4785.2|Contig4-2993_0015|orf6.4191|CA2330|CaO19.11975|CaO19.4499	Protein similar to S. cerevisiae Rim2p; induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	947493	949240	-	orf19.4498	947493	949240	1	949240	947493	949182	948475		orf19.11974|IPF22751.1|IPF4784.1|Contig4-2993_0012|orf6.4190|CA2329|CaO19.11974|CaO19.4498|IPF4784	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	949254	950345	+	orf19.4497	949254	950345	1	949254	950345	949405	950124	MED8	orf19.11973|IPF4783.2|IPF19476.2|Contig4-2993_0011|orf6.30|orf6.4189|CA2328|CaO19.4497	Protein not essential for viability; similar to S. cerevisiae Med8p, which is a subunit of the RNA polymerase II mediator complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	950178	951592	-	orf19.4496	950178	951592	1	951592	950178	951458	950406		orf19.11972|IPF4782.2|IPF19475.2|Contig4-2993_0010|orf6.31|orf6.4188|CA2327|CaO19.4496|IPF4782	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	951966	952273	+	ntar_372	951966	952273	1	951966	952273	952141	952272			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	952333	954234	-	orf19.4495	952333	954234	1	954234	952333	954019	952547	NDH51	orf19.11971|IPF4781.1|IPF4779.3|Contig4-2993_0009|orf6.2956|orf6.4187|CA2326|NUBM|CaO19.11971|CaO19.4495	Subunit of nicotinamide adenine dinucleotide dehydrogenase complex I, of the mitochondrial electron transport chain; required for wild-type filamentous growth; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	954526	954832	+	ntar_373	954526	954832	1	954526	954832	954526	954648			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	955166	956677	+	orf19.4494	955166	956677	1	955166	956677	955166	956605	KTR2	orf19.11970|MNT5|IPF18483.2|IPF4778.2|Contig4-2993_0007|orf6.2955|orf6.4186|CA1444|CaO19.4494	Protein with similarity to S. cerevisiae Ktr2p, which is a mannosyltransferase; transcription is elevated in chk1, nik1, and sln1 homozygous null mutants; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	956622	956915	-	ntar_374	956622	956915	1	956915	956622	956915	956739			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	956890	958288	+	orf19.4492	956890	958288	1	956890	958288	956939	958219		orf19.11968|IPF22744.1|IPF4776.2|Contig4-2993_0006|orf6.2953|CA1443|CaO19.4492|EBP2|CaO19.11968|IPF4776	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	958643	959809	+	orf19.4491	958643	959809	1	958643	959809	958692	959747	ERG20	orf19.11967|IPF22748.1|IPF4775.2|Contig4-2993_0004|orf6.2952|CA1442|CaO19.11967|CaO19.4491	Putative farnesyl pyrophosphate synthetase involved in isoprenoid and sterol biosynthesis, based on similarity to S. cerevisiae Erg20p; likely to be essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	959725	960294	-	orf19.4490.2	959725	960294	1	960294	959725	960251	959964	QCR8	IPF22763.1|IPF4774.1|Contig4-2993_0003|CA1441	ORF Predicted by Annotation Working Group; shows colony morphology-related gene regulation by Ssn6p; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	960915	962041	-	orf19.4490	960915	962041	1	962041	960915	961997	961440	RPL17B	orf19.11966|IPF22753.1|IPF4772.1|Contig4-2993_0002|orf6.2951|CA1440|CaO19.4490|RPL17|CaO19.11966	Predicted ribosomal protein; mutation confers hypersensitivity to 5-FU, tubercidin (7-deazaadenosine); genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated on phagocytosis by macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	962514	964627	+	ntar_1417	962514	964627	2	962514|963437	963320|964627					 [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	963232	964529	-	ntar_1418	963232	964529	2	964529|964439	964507|963232	964208	963927			 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=C]
Ca21chr2	964910	968536	+	orf19.4488	964910	968536	1	964910	968536	965502	968417		orf19.11964|IPF19603.2|IPF19602.1|Contig4-2699_0008|orf6.2949|orf6.751|CA1439|SWI3|CaO19.4488|IPF19602	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	968379	969291	-	ntar_375	968379	969291	1	969291	968379	968603	968379			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	969575	969741	-	ntar_376	969575	969741	1	969741	969575					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	969586	970436	+	ntar_377	969586	970436	1	969586	970436					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	970688	971016	+	ntar_378	970688	971016	1	970688	971016					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	971259	971725	+	ntar_379	971259	971725	1	971259	971725					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	971654	974945	-	orf19.144	971654	974945	1	974945	971654	974872	971804	SNU114	orf19.7784|IPF16740.2|IPF29942.1|Contig4-2900_0027|orf6.1176|CA0350|CaO19.144	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Snu114p, which is an RNA helicase involved in pre-mRNA splicing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	975173	976564	-	orf19.145	975173	976564	1	976564	975173	976175	975366	RPB4	orf19.7785|orf19.7786|IPF27151.1|IPF27153.1|IPF19620.1|IPF19621.1|orf6.1177|orf6.1178|CA0351|CA0352|orf19.146|RPB4.3f	Protein similar to S. cerevisiae Rpb4p, which is a component of RNA polymerase II; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	976693	979745	-	orf19.147	976693	979745	1	979745	976693	979332	976903	YAK1	orf19.7787|orf19.7788|IPF27150.1|IPF16042.2|IPF16043.2|IPF19456.2|orf6.1179|orf6.63|orf6.1180|CA0353|CA0354|orf19.148|YAK1.3f	Predicted serine-threonine protein kinase involved in hyphal growth regulation and biofilm formation; induced in core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	980006	980443	+	orf19.149	980006	980443	1	980006	980443	980006	980443		IPF27154.1|IPF29941.1|orf6.62	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	981103	982080	+	orf19.150	981103	982080	1	981103	982080	981178	981642		orf19.7790|IPF16036.1|IPF29940.1|Contig4-1742_0002|orf6.75|CA0010|CaO19.150|TIM17|CaO19.7790|IPF16036	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	982171	984780	-	orf19.151	982171	984780	1	984780	982171	984458	982446	TPO5	orf19.7792|IPF19097.2|IPF17861.2|IPF19195.1|orf6.662|orf6.76|orf6.660|CA0144|CA0143|orf19.153|CaO19.151|IPF19195.3f	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; hyphal induced; macrophage induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	984861	986133	-	orf19.154	984861	986133	1	986133	984861	986084	984999		orf19.7793|IPF19598.1|IPF19599.1|orf6.659|orf6.940|CA0234|UTP30|CaO19.154|IFA3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	986320	987984	-	orf19.155	986320	987984	1	987984	986320	987521	986487	URE2	orf19.7794|IPF15126.2|IPF19196.2|orf6.658|orf6.939|CA0233|CaO19.155	Functional homolog of S. cerevisiae Ure2p, which is a regulator of nitrogen utilization, and which also has a prion form called [URE3] [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	988114	988471	+	ntar_380	988114	988471	1	988114	988471					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	988361	991024	-	orf19.156	988361	991024	1	991024	988361	990196	988715	FGR51	orf19.7795|orf19.7796|orf19.7825|IPF27149.1|IPF15128.2|IPF27152.1|IPF15129.1|IPF16389.1|IPF19828.2|Contig4-1770_0004|orf6.938|orf6.937|orf6.1144|orf6.196|CA0232|CA6168|CA0335|orf19.157|orf19.195|LPF3|CaO19.7795|CaO19.156|IFA1	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	991626	993398	+	orf19.194	991626	993398	1	991626	993398	991714	993321		orf19.7824|IPF19562.1|IPF19563.2|Contig4-2639_0010|orf6.1143|orf6.197|CA0334|CaO19.194|IPF19562	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	993340	994444	-	orf19.193	993340	994444	1	994444	993340	994229	993393		orf19.7823|IPF27135.1|IPF14730.2|Contig4-2639_0009|orf6.2966|orf6.1142|CA1449|CaO19.193|IPF14730|IPF14730.5eoc|IPF14730.1	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	995232	997258	+	orf19.192	995232	997258	1	995232	997258	995424	997127		orf19.7822|IPF27132.1|IPF14728.2|Contig4-2639_0004|Contig4-2639_0005|orf6.2965|CA1448|CaO19.7822|CaO19.192|IPF14728	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	997629	1000646	+	orf19.191	997629	1000646	1	997629	1000646	997849	1000524	KIC1	orf19.7821|IPF27130.1|IPF15055.2|Contig4-2639_0001|orf6.2964|CA1447|CaO19.191|CaO19.7821|NRK1	Member of the GCK-III subfamily of eukaryotic Ste20p kinases; in RAM cell wall integrity signaling network; role in cell separation, azole sensitivity; required for hyphal growth; constitutive expression is MTL, white-opaque independent [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1000689	1001822	+	orf19.190	1000689	1001822	1	1000689	1001822	1000848	1001822		orf19.7820|IPF27134.1|IPF15052.3|orf6.2963|CA1446|CaO19.190|CaO19.7820|YAL011|IPF15052.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1001967	1004449	+	orf19.188	1001967	1004449	1	1001967	1004449	1001967	1004417		orf19.7818|IPF13416.3|IPF18673.1|IPF13410.3|orf6.2960|orf6.950|orf6.2961|CA6314|CA0237|orf19.187|CaO19.188|IPF13416.5f|IPF13416|IPF13416.2	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.187 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1004375	1005680	-	orf19.185	1004375	1005680	1	1005680	1004375	1005644	1004538		orf19.7816|IPF13418.1|IPF13417.3|Contig4-1757_0005|orf6.2958|orf6.948|CA1445|MRP51|CaO19.185|IPF13417.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1005838	1007406	-	orf19.184	1005838	1007406	1	1007406	1005838	1007321	1005900		orf19.7814|IPF13419.2|IPF29930.1|Contig4-1757_0003|orf6.2957|orf6.946|CA0236|CaO19.184|MDM10	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1007680	1008438	+	orf19.183	1007680	1008438	1	1007680	1008438	1007761	1008429	HIS3	orf19.7813|IPF13420.2|IPF19395.2|Contig4-2218_0007|orf6.945|CA0235|CaO19.183	Imidazoleglycerol-phosphate dehydratase, enzyme of histidine biosynthesis; functionally complements S. cerevisiae his3-1 mutation; hyphal-induced expression; regulated by Gcn2p and Gcn4p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1008618	1010185	+	orf19.182	1008618	1010185	1	1008618	1010185	1008679	1010094		orf19.7812|IPF27133.1|IPF27131.1|IPF13421.3|IPF19396.1|Contig4-2218_0006|orf6.195|orf6.944|CA0029|PET56|IPF13421.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1009709	1010578	-	ntar_381	1009709	1010578	1	1010578	1009709	1010578	1010069			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1010469	1010617	-	ntar_382	1010469	1010617	1	1010617	1010469					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1010664	1012129	+	orf19.4128	1010664	1012129	1	1010664	1012129	1010792	1012096		orf19.7811|IPF27136.1|IPF19397.2|IPF13423.2|Contig4-1469_0001|Contig4-2218_0004|orf6.194|orf6.2517|CA1159|orf19.181|CaO19.4128|IPF13423	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1010748	1010993	-	ntar_383	1010748	1010993	1	1010993	1010748					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1013075	1014768	-	orf19.4127	1013075	1014768	2	1014768|1014442	1014521|1013075	1014567	1013161		IPF13275.2|Contig4-2218_0002|orf6.2516|CA1158|IPF13275	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1015883	1017193	+	orf19.4125	1015883	1017193	1	1015883	1017193	1015910	1017148		IPF13278.2|Contig4-2828_0002|orf6.2514|CA1157|CaO19.4125|PZF1	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1016993	1022071	-	orf19.4123	1016993	1022071	1	1022071	1016993	1022071	1017245		IPF10133.2|Contig4-2828_0004|Contig4-2828_0005|Contig4-2828_0007|orf6.2512|CA1156|RLR1|CaO19.4123	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1022368	1024005	-	orf19.3521	1022368	1024005	1	1024005	1022368	1023958	1023164	ARH2	orf19.11004|IPF23741.1|IPF17908.2|orf6.2034	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1024084	1024155	-	td(guc)5	1024084	1024155	1	1024155	1024084				tD(GUC)5.2	tRNA-Asp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1024932	1025886	+	ntar_384	1024932	1025886	1	1024932	1025886					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1026295	1026600	+	orf19.3522	1026295	1026600	1	1026295	1026600	1026295	1026600		orf19.11005|IPF17272|IPF19533.2|IPF17272.2|Contig4-1527_0001|Contig4-2828_0015|orf6.2035|CA0860|CaO19.11005|CaO19.3522|IPF17272.3f	Predicted ORF in Assemblies 19, 20 and 21; transcription is downregulated in response to treatment with ciclopirox olamine [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1026601	1027051	-	ntar_385	1026601	1027051	1	1027051	1026601					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1027235	1027305	+	tg(gcc)3	1027235	1027305	1	1027235	1027305				tG(GCC)3.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1027412	1029803	-	orf19.3523	1027412	1029803	1	1029803	1027412	1029687	1027450	CRK1	orf19.11006|IPF4453.2|IPF17271.2|Contig4-2828_0017|orf6.2036|orf6.2037|orf6.308|CA0861|CA0862|orf19.3524|CaO19.3523|CRK1.3f	Protein kinase of the Cdc2 kinase subfamily involved in hyphal development and virulence; promotes hyphal development independently of Cph1 and Efg1; functionally complements pheromone hypersensitivity of S. cerevisiae sgv1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1029951	1031983	-	orf19.3526	1029951	1031983	1	1031983	1029951	1031796	1030132	ITR1	orf19.11009|ITR2|IPF23713.1|IPF4456.1|Contig4-2828_0018|orf6.2039|orf6.310|CA0863|HGT15|CaO19.3526	Inositol transporter required for uptake of exogenous inositol; major facilitator superfamily; 12 probable transmembrane motifs; expressed in rich medium with 2% glucose; fluconazole, caspofungin downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1030300	1030555	+	ntar_386	1030300	1030555	1	1030300	1030555					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1032381	1032661	+	ntar_387	1032381	1032661	1	1032381	1032661					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1032672	1034089	-	orf19.3527	1032672	1034089	1	1034089	1032672	1033784	1032918	CYT1	orf19.11011|orf6.1503|orf6.2040|IPF23744.1|IPF4458.2|Contig4-2446_0010|CA0864|CaO19.3527|CA0524|CYT12|IPF18952.1	Protein described as cytochrome c1; transcriptionally regulated by iron; expression greater in high iron; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1034385	1035394	-	orf19.3528	1034385	1035394	1	1035394	1034385	1035301	1034873		orf19.11012|IPF4459.2|IPF28737.1|Contig4-2446_0009|orf6.1502|orf6.2041|CA0523|CaO19.3528|IPF4459	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1035615	1035822	-	ntar_388	1035615	1035822	1	1035822	1035615					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1036722	1038554	+	orf19.3529	1036722	1038554	1	1036722	1038554	1036722	1038554	ABP2	orf19.11013|IPF4463.2|IPF28729.1|Contig4-2446_0007|orf6.1501|CA0522|CaO19.3529|CaO19.11013|IPF4463	Protein of unknown function; induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1038560	1039990	-	orf19.3530	1038560	1039990	1	1039990	1038560	1039733	1038744	CKA2	orf19.11014|IPF23734.1|IPF4465.2|Contig4-2446_0005|orf6.1500|CA0521|CaO19.3530|CaO19.11014	Catalytic subunit (alpha-subunit) of protein kinase CK2; interaction with calcineurin pathway to affect fluconazole sensitivity; not essential for viability; synthetically lethal with CKA1; similar to S. cerevisiae Cka2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1040073	1041130	+	orf19.3531	1040073	1041130	1	1040073	1041130	1040198	1041031		orf19.11015|IPF23736.1|IPF4466.2|Contig4-2446_0002|orf6.1499|CA0520|CaO19.3531|CaO19.11015|IPF4466	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1041018	1041983	-	orf19.3532	1041018	1041983	1	1041983	1041018	1041938	1041087	MRPL10	orf19.11016|IPF19871.1|IPF4468.3|orf6.1498|CA0519|CaO19.3532|CaO19.11016|MRPL10.3	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1042518	1042590	+	tt(agu)4	1042518	1042590	1	1042518	1042590				tT(AGU)4.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1042766	1043496	+	orf19.3533	1042766	1043496	1	1042766	1043496	1043020	1043469		orf19.11017|IPF6421.2|IPF4470.2|Contig4-2990_0021|orf6.4279|orf6.607|CA0130|CaO19.3533|CaO19.11017|IPF4470	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1043449	1044542	-	orf19.3534	1043449	1044542	2	1044542|1044184	1044276|1043449	1044306	1043583	RHO3	orf19.11018|IPF6422.1|IPF4472.1|Contig4-2990_0019|orf6.4280|orf6.606|CA2393	Putative Rho family GTPase; possible substrate of protein farnesyltransferase and geranylgeranyltransferase type I; greater transcription in hyphal form than yeast form [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1044693	1045757	-	orf19.3535	1044693	1045757	1	1045757	1044693	1045705	1044839		orf19.11019|IPF6424.1|IPF4474.2|Contig4-2990_0017|orf6.4281|orf6.605|CA2394|CaO19.3535|IPF6424	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1045862	1047425	-	orf19.3536	1045862	1047425	1	1047425	1045862	1047388	1046000		orf19.11020|IPF23723.1|IPF6425.1|Contig4-2990_0016|orf6.4282|CA2395|CaO19.3536|CaO19.11020|IPF6425	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1047769	1048421	-	orf19.3537	1047769	1048421	1	1048421	1047769	1048327	1047929		orf19.11021|IPF23756.1|IPF6428.1|Contig4-2990_0015|orf6.4283|CA2396|CaO19.3537|CaO19.11021|IPF6428	Predicted ORF in Assemblies 19, 20 and 21; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1049271	1051538	+	orf19.3538	1049271	1051538	1	1049271	1051538	1049271	1051520	FRE9	orf19.11022|CFL12|IPF23706.1|IPF6430.2|CFL98|Contig4-2990_0013|orf6.4284|CA2397|CaO19.3538|CFL8|CaO19.11022	Protein similar to ferric reductase Fre10p; alkaline upregulated; ciclopirox olamine induced; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	1051534	1052887	-	orf19.3539	1051534	1052887	1	1052887	1051534	1052802	1051816		orf19.11023|IPF23732.1|IPF6431.2|Contig4-2990_0011|orf6.4285|CA2398|CaO19.11023|CaO19.3539|IPF6431	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1052953	1055550	+	orf19.3540	1052953	1055550	1	1052953	1055550	1053006	1055354	MAK5	orf19.11024|IPF23705.1|IPF6433.2|Contig4-2990_0009|orf6.4286|CA2399|CaO19.3540|CaO19.11024	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-repressed via Cap1p; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1055351	1056866	-	orf19.3541	1055351	1056866	1	1056866	1055351	1056790	1055480	ERF1	orf19.11025|IPF23726.1|IPF6434.1|Contig4-2990_0007|orf6.4287|CA2400|SUP45|CaO19.11025|CaO19.3541	Putative translation release factor 1, which interacts with stop codons and promotes release of nascent peptides from ribosomes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1057042	1058820	+	orf19.3542	1057042	1058820	1	1057042	1058820	1057098	1058417	LEM3	orf19.11026|IPF23722.1|IPF6435.1|Contig4-2990_0004|orf6.4288|CA2401|CaO19.3542|CaO19.11026	Predicted ORF in Assemblies 19, 20 and 21; mutation causes increased resistance to miltefosine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1058455	1058799	-	orf19.3543	1058455	1058799	1	1058799	1058455	1058799	1058455			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1058923	1060101	-	ntar_389	1058923	1060101	1	1060101	1058923	1059931	1059761			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1058999	1060174	+	orf19.3544	1058999	1060174	1	1058999	1060174	1059033	1060151		orf19.11028|IPF23729.1|IPF6438.1|Contig4-2990_0001|orf6.4290|CA2403|CaO19.3544|CaO19.11028|IPF6438	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1060351	1063844	+	orf19.3545	1060351	1063844	1	1060351	1063844	1060401	1063781		orf19.11029|IPF6439.3|IPF28743.1|Contig4-2204_0004|orf6.4291|orf6.4656|CA2404|CDC15|CaO19.3545|SEP|CA2669|IPF17494.3eoc|IPF17494.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1063940	1065347	+	orf19.3546	1063940	1065347	1	1063940	1065347	1064025	1065287		orf19.11030|IPF23725.1|IPF17553.2|Contig4-2204_0003|orf6.4655|CA2668|PEX2|CaO19.3546|CaO19.11030|IPF17553	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1065269	1067343	-	orf19.3547	1065269	1067343	1	1067343	1065269	1067309	1065306		orf19.11031|IPF23709.1|IPF16996.2|Contig4-2204_0001|orf6.4654|CA2667|CaO19.11031|CaO19.3547|IPF16996	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1067501	1068433	+	orf19.3548	1067501	1068433	1	1067501	1068433	1067541	1068212		orf19.11032|IPF23738.1|IPF16995.2|orf6.4653|CA2666|CaO19.3548|CaO19.11032|IPF16995	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1068915	1069409	+	orf19.3548.1	1068915	1069409	1	1068915	1069409	1069064	1069261	WH11	IPF23703.1|IPF13362.2|Contig4-1753_0002	Cytoplasmic protein expressed specifically in white phase yeast-form cells; expression in opaque cells increases virulence and frequency of opaque-to-white switching; null mutant shows wild-type switching; similar to S. cerevisiae Hsp12p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1069604	1070636	+	orf19.3549	1069604	1070636	1	1069604	1070636	1069634	1070581	CDC21	orf19.11033|TMP1|IPF19442.2|IPF13364.2|Contig4-1753_0001|orf6.102|orf6.4652|CA2665|CaO19.3549|CaO19.11033	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; transcription is downregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1070565	1072113	-	orf19.3550	1070565	1072113	1	1072113	1070565	1072037	1070682	SGO1	orf19.11034|IPF13368.3|IPF28734.1|Contig4-1753_0003|orf6.103|orf6.4651|CA0014|CaO19.3550|IPF13368|IPF13368.2	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1072209	1073071	+	orf19.3551	1072209	1073071	1	1072209	1073071	1072240	1072617		IPF13367.3|IPF13370.2|orf6.4650|CA2664|CaO19.3551|IPF13370	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1072526	1075874	-	orf19.3552	1072526	1075874	1	1075874	1072526	1075769	1072671		orf19.11035|IPF23764.1|IPF13373.2|Contig4-1650_0003|orf6.4649|CA2663|NUP133|CaO19.3552|CaO19.11035	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1076045	1077201	-	orf19.3553	1076045	1077201	1	1077201	1076045	1077167	1076184	RPF2	orf19.11036|IPF23733.1|IPF17139.2|Contig4-1650_0001|orf6.4648|CA2662|CaO19.3553|CaO19.11036|IPF17139	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1077471	1077556	-	tq(uug)3	1077471	1077556	2	1077556|1077505	1077519|1077471				tQ(UUG)3.2	tRNA-Gln predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1077636	1079228	-	orf19.3554	1077636	1079228	1	1079228	1077636	1079143	1077830	AAT1	orf19.11037|IPF18970.2|IPF14258.2|Contig4-2239_0001|Contig4-2239_0002|orf6.1447|orf6.4647|CA2661|CaO19.3554	Protein described as aspartate aminotransferase; soluble protein in hyphae; macrophage-induced protein; alkaline upregulated; amphotericin B repressed; gene used for strain identification by multilocus sequence typing, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1080136	1080374	+	ntar_390	1080136	1080374	1	1080136	1080374					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1082482	1082678	+	ntar_391	1082482	1082678	1	1082482	1082678					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1083510	1086320	+	orf19.3555	1083510	1086320	1	1083510	1086320	1083888	1086293		orf19.11038|IPF17574.2|IPF16659.3|Contig4-2581_0007|orf6.1448|orf6.4646|orf6.837|CA0485|CaO19.3555|IPF17574	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1086588	1089848	+	orf19.3556	1086588	1089848	1	1086588	1089848	1086748	1089594		orf19.11040|IPF23708.1|IPF16463.2|Contig4-1675_0003|orf6.1449|orf6.836|CA0199|CaO19.3556|KAP104	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1089710	1090805	-	orf19.3557	1089710	1090805	1	1090805	1089710	1090805	1089909		orf19.11041|IPF3180.2|IPF19128.2|Contig4-1675_0002|orf6.1605|orf6.835|CA0582|CaO19.3557|IPF3180	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1090856	1091631	-	orf19.3558	1090856	1091631	1	1091631	1090856	1091497	1090856		orf19.11042|IPF23742.1|IPF3181.2|Contig4-1675_0001|orf6.1604|CA0581|CaO19.3558|ERP3|CaO19.11042|IPF3181	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1091779	1093149	-	orf19.3559	1091779	1093149	2	1093149|1092328	1092611|1091779	1093099	1091873		orf19.11043|orf19.11044|IPF23746.1|IPF23749.1|IPF3184.1|IPF3182.1|Contig4-2222_0002|Contig4-2222_0003|orf6.1603|orf6.1602|CA0579|orf19.3560|IPF3184|CA0580|IPF3184.exon2|IPF3184.exon1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1093450	1095656	+	orf19.3561	1093450	1095656	1	1093450	1095656	1093604	1095574	CDC7	orf19.11045|IPF19636.2|IPF19635.2|Contig4-3023_0026|orf6.1601|orf6.5768|CA3493|CaO19.3561|IPF19635.1	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression; S. cerevisiae ortholog is not cell-cycle regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1095678	1097421	-	orf19.3563	1095678	1097421	1	1097421	1095678	1097408	1095735		orf19.11047|IPF3189|IPF23714.1|IPF3189.1|Contig4-3023_0025|orf6.5766|CA3492|CaO19.3563|CaO19.11047	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1097782	1099094	-	orf19.3564	1097782	1099094	1	1099094	1097782	1099029	1098019	RPC40	orf19.11048|IPF23728.1|IPF3191.1|Contig4-3023_0023|orf6.5765|CA3491|CaO19.11048|CaO19.3564	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1099295	1100468	-	orf19.3565	1099295	1100468	1	1100468	1099295	1100407	1099547		orf19.11049|IPF23737.1|IPF3192.1|Contig4-3023_0022|orf6.5764|CA3490|CaO19.11049|CaO19.3565|IPF3192	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1100622	1102160	-	orf19.3567	1100622	1102160	1	1102160	1100622	1102082	1100622	BIO32	orf19.11051|IPF23721.1|IPF3195.1|Contig4-3023_0021|orf6.5762|CA3489|CaO19.3567|CaO19.11051|IPF3195	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr2	1102442	1104530	-	orf19.3568	1102442	1104530	1	1104530	1102442	1104197	1102641	RXT3	orf19.11052|IPF23717.1|IPF3198.2|Contig4-3023_0020|orf6.5761|CA3488|CaO19.11052|CaO19.3568|IPF3198	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1106030	1108121	+	orf19.3569	1106030	1108121	1	1106030	1108121	1106693	1107811		orf19.11053|IPF23730.1|IPF3203.2|Contig4-3023_0017|orf6.5760|CA3487|YLR407w|CaO19.11053|CaO19.3569|IPF3203	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1107795	1108520	-	orf19.3571	1107795	1108520	1	1108520	1107795	1108503	1108087		orf19.11055|IPF23754.1|IPF3204.1|Contig4-3023_0016|orf6.5758|CaO19.3571|CaO19.11055	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1108672	1110051	+	orf19.3572	1108672	1110051	1	1108672	1110051	1108751	1110046		orf19.11056|IPF23727.1|IPF3206.1|Contig4-3023_0015|orf6.5757|CA3486|CaO19.3572|CaO19.11056|IPF3206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1109027	1109219	-	ntar_392	1109027	1109219	1	1109219	1109027					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1109635	1110052	-	ntar_393	1109635	1110052	1	1110052	1109635					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1110395	1111749	+	orf19.3572.3	1110395	1111749	2	1110395|1111064	1110581|1111749	1110528	1111348		IPF23702.1|IPF3208.1|Contig4-3023_0009	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1111558	1112050	-	ntar_1427	1111558	1112050	2	1112050|1111686	1111986|1111558					 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1112294	1112380	-	ti(aau)3	1112294	1112380	2	1112380|1112329	1112343|1112294				tI(AAU)3.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1112810	1116477	+	orf19.3573	1112810	1116477	1	1112810	1116477	1112926	1116399		orf19.11057|IPF23761.1|IPF3213.2|Contig4-3023_0005|Contig4-3023_0006|orf6.5756|CA3485|PEX6|CaO19.3573|CaO19.11057|IPF3213	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1116468	1117283	-	orf19.3574	1116468	1117283	1	1117283	1116468	1117170	1116739		orf19.11058|IPF23751.1|IPF3214.1|Contig4-3023_0004|orf6.5755|CA3484|MDJ2|CaO19.11058|CaO19.3574|IPF3214	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1117517	1118289	-	ntar_394	1117517	1118289	1	1118289	1117517	1118267	1118136			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1118680	1120407	+	orf19.3575	1118680	1120407	1	1118680	1120407	1118746	1120260	CDC19	orf19.11059|PYK1|IPF23718.1|IPF19988.1|Contig4-3023_0002|Contig4-3023_0003|orf6.5754|CA3483|CaO19.3575|CaO19.11059	Putative pyruvate kinase; on yeast-form cell surface; soluble in hyphae; antigenic; Gcn4p, Hog1p regulated; induced on polystyrene adherence; downregulated upon phagocytosis, farnesol treatment; mutation affects filamentation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1120580	1121656	+	orf19.3577	1120580	1121656	1	1120580	1121656	1120618	1121538	COQ5	orf19.11061|IPF23735.1|IPF3222.1|Contig4-3023_0001|orf6.5752|CA3482|CaO19.3577|CaO19.11061	Protein described as methyltransferase of ubiquinone biosynthesis; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1121577	1122064	-	orf19.3577.1	1121577	1122064	1	1122064	1121577	1121940	1121686		IPF23701.1|IPF3223.1|CA3481|IPF3223	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1122025	1122610	+	orf19.3578	1122025	1122610	1	1122025	1122610	1122114	1122560		orf19.11062|IPF23750.1|IPF3224.1|orf6.5751|CA3480|CaO19.11062|CaO19.3578|IPF3224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1122750	1123596	+	orf19.3579	1122750	1123596	1	1122750	1123596	1122782	1123483	ATP4	orf19.11063|IPF23739.1|IPF3225.1|Contig4-2234_0001|orf6.5750|CA3479|CaO19.11063|CaO19.3579	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1123496	1124943	-	orf19.3581	1123496	1124943	1	1124943	1123496	1124918	1123611		orf19.11065|IPF23724.1|IPF3227.1|Contig4-2234_0002|orf6.5748|CA3478|CaO19.3581|MSI1|CaO19.11065|IPF3227	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1125255	1126257	+	orf19.3582	1125255	1126257	2	1125255|1125448	1125388|1126257	1125339	1126138		orf19.11066|IPF23740.1|IPF3229.1|Contig4-2234_0003|orf6.5747|CA3477|CaO19.11066|CaO19.3582|IPF3229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1125897	1127444	-	orf19.3583	1125897	1127444	1	1127444	1125897	1127371	1126214		orf19.11067|IPF23731.1|IPF3232.2|orf6.5746|CA3476|CaO19.3583|YRB2|CaO19.11067|YRB2.3eoc|NUP2.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1127551	1128872	-	orf19.6866	1127551	1128872	2	1128872|1128713	1128790|1127551	1128792	1127673		orf19.14156|IPF8044|IPF20238.1|IPF8044.2|Contig4-3086_0001|orf6.7130|CA4556|U1-70K	Putative U1-70K component of the U1 snRNP, involved in splicing; ortholog of S. cerevisiae SNP1; downregulated upon adherence to polystyrene; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1128951	1129715	+	orf19.6867	1128951	1129715	1	1128951	1129715	1129080	1129469		IPF20253.1|IPF8043.1|Contig4-3086_0003|orf6.7131|CA4557|CaO19.6867|IPF8043	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1129761	1130943	+	orf19.6868	1129761	1130943	1	1129761	1130943	1129825	1130841		orf19.14157|IPF20237.1|IPF8042.1|Contig4-3086_0005|orf6.7132|CA4558|CaO19.14157|GRE24|CaO19.6868|GRP5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1130851	1132231	-	orf19.6869	1130851	1132231	1	1132231	1130851	1132002	1130953		orf19.14158|IPF20236.1|IPF8041.1|Contig4-3086_0006|orf6.7133|CA4559|CaO19.6869|BZD98|CaO19.14158|IPF8041	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1134927	1139253	+	orf19.6871	1134927	1139253	1	1134927	1139253	1135090	1139148		orf19.14160|IPF20248.1|IPF8038.2|Contig4-3086_0013|orf6.7135|CA4560|CaO19.14160|CaO19.6871|IPF8038	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1139235	1140512	-	orf19.6872	1139235	1140512	1	1140512	1139235	1140248	1139328		orf19.14161|IPF20239.1|IPF8031.2|Contig4-3086_0014|orf6.7136|CA4561|CaO19.6872|CaO19.14161|IPF8031	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1141109	1141513	+	ntar_395	1141109	1141513	1	1141109	1141513					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1141564	1142796	-	orf19.6873	1141564	1142796	2	1142796|1142399	1142765|1141564	1142393	1141773	RPS8A	orf19.14162|IPF20242.1|IPF6565.2|Contig4-3086_0015|orf6.7137|CA4562|RPS8|CaO19.6873|CaO19.14162	Putative ribosomal protein; similar to S. cerevisiae Rps8Bp; gene is induced by ciclopirox olamine treatment; genes encoding cytoplasmic ribosomal subunits are downregulated upon phagocytosis by murine macrophage; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1143198	1143882	+	orf19.6873.1	1143198	1143882	1	1143198	1143882	1143299	1143511		IPF20221.1|IPF6566.1|Contig4-3086_0017|CA4563|IPF6566	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1143939	1144020	-	ts(aga)4	1143939	1144020	1	1144020	1143939				tS(AGA)4.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1149754	1152305	+	orf19.6874	1149754	1152305	1	1149754	1152305	1150098	1151921		orf19.14163|IPF20227.1|IPF6572.2|Contig4-3086_0028|orf6.7138|CA4564|BAS1|CaO19.6874|CaO19.14163|IPF6572	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1152553	1155706	+	orf19.6875	1152553	1155706	1	1152553	1155706	1152671	1155505	VPS35	orf19.14164|IPF20219.1|IPF6573.1|Contig4-3086_0031|orf6.7139|CA4565|CaO19.6875|CaO19.14164	Putative role in vacuolar sorting; downregulated in biofilm; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1155977	1156267	-	ntar_396	1155977	1156267	1	1156267	1155977					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1156829	1160245	+	orf19.6877	1156829	1160245	1	1156829	1160245	1157113	1160064		PNG2|orf19.14166|IPF20218.1|IPF19801.1|Contig4-3086_0035|orf6.7141|CA4566|CaO19.14166|CaO19.6877|IPF19801	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in response to treatment with caspofungin, ciclopirox olamine or ketoconazole; gene of core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1160117	1161118	-	orf19.6879	1160117	1161118	1	1161118	1160117	1161071	1160271		orf19.14168|IPF20240.1|IPF9555.1|Contig4-3086_0036|orf6.7143|CA4567|CaO19.6879|SEN34|CaO19.14168|IPF9555	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1161271	1164212	+	orf19.6880	1161271	1164212	1	1161271	1164212	1161404	1164073		orf19.14169|IPF20224.1|IPF9554.1|Contig4-3086_0037|orf6.7144|CA4568|COG4|CaO19.14169|CaO19.6880|IPF9554	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1164106	1164971	-	orf19.6881	1164106	1164971	1	1164971	1164106	1164808	1164161	YTH1	orf19.14170|IPF20241.1|IPF9552.1|Contig4-3086_0038|orf6.7145|CA4569|CaO19.6881|CaO19.14170|IPF9552	Protein described as an mRNA cleavage and polyadenylation specificity factor; transcription is regulated upon yeast-hyphal switch; decreased expression in hyphae compared to yeast-form cells; fluconazole or flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1165272	1167102	+	orf19.6882	1165272	1167102	1	1165272	1167102	1165501	1167012	OSM1	orf19.14171|IPF20231.1|IPF9550.1|Contig4-3086_0042|orf6.7146|CA4570|CaO19.14171|CaO19.6882|IPF9550	Putative flavoprotein subunit of fumarate reductase; soluble protein in hyphae; fungal-specific (no human or murine homolog); caspofungin repressed; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1166955	1168213	-	orf19.6882.1	1166955	1168213	2	1168213|1167600	1168057|1166955	1168075	1167296		IPF20254.1|IPF9548.1|Contig4-3086_0043|CA4571|RPL33|RPL33.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1168432	1170127	-	orf19.6883	1168432	1170127	1	1170127	1168432	1169839	1168547		orf19.14172|IPF20234.1|IPF9434.2|orf6.7147|CA4572|CaO19.6883|KES1|CaO19.14172	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1170218	1172256	-	orf19.6884	1170218	1172256	1	1172256	1170218	1171859	1170402		orf19.14173|IPF20233.1|IPF9431.1|Contig4-2670_0004|orf6.7148|CA4573|GWT1|CaO19.6884|CaO19.14173|IPF9431	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1172364	1174269	+	orf19.6885	1172364	1174269	1	1172364	1174269	1172595	1174139	SPO7	orf19.14174|IPF20230.1|IPF9430.2|Contig4-2670_0007|orf6.7149|CA4574|CaO19.6885|CaO19.14174|IPF9430	Protein similar to S. cerevisiae Spo7p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1174575	1176053	+	orf19.6886	1174575	1176053	1	1174575	1176053	1174647	1175897		orf19.14175|IPF20235.1|IPF9428.2|Contig4-2670_0008|orf6.7150|CA4575|CaO19.6886|CaO19.14175|IPF9428	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1175855	1176487	-	orf19.6887	1175855	1176487	1	1176487	1175855	1176415	1176083		orf19.14176|orf6.7151|CaO19.14176|CaO19.6887	Predicted ORF from Assembly 19; repressed by nitric oxide; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1178328	1179952	+	orf19.6888	1178328	1179952	2	1178328|1178504	1178393|1179952	1178328	1179766		orf19.14177|orf6.7152|IPF19437.2|IPF9425.2|Contig4-2509_0013|Contig4-2670_0012|orf6.122|CA4576|CaO19.6888|ZFU3|IPF9425.3	Protein with Gal4p-like DNA-binding domain; gene transcription regulated by Mig1p and Tup1p [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=G]
Ca21chr2	1180400	1182050	-	orf19.6889	1180400	1182050	1	1182050	1180400	1181854	1180514	MKK2	orf19.14178|IPF9424.3|IPF14309.2|Contig4-2509_0011|orf6.121|orf6.7153|CA4577|CaO19.6889	Protein not essential for viability; similar to S. cerevisiae Mkk2p, which is a MAP kinase kinase involved in signal transduction; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1182464	1185333	-	orf19.6891	1182464	1185333	2	1185333|1185190	1185256|1182464	1185303	1182572	RFC1	orf19.14180|IPF19208.2|IPF14308.2|Contig4-2509_0005|Contig4-2509_0007|orf6.632|orf6.7155|CA4578	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Rfc1, which is a subunit of DNA replication factor C [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1185723	1187304	-	orf19.6893	1185723	1187304	1	1187304	1185723	1187214	1185853		orf19.14182|IPF17098.1|IPF14300.2|Contig4-2509_0001|orf6.630|orf6.7157|orf6.7158|CA6307|CA0139|orf19.6894|RUD3.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1189226	1190956	+	orf19.5204	1189226	1190956	1	1189226	1190956	1189319	1190956		orf19.12671|orf19.14183|IPF22006.1|IPF13971.2|IPF20250.1|IPF18198.1|Contig4-2237_0001|orf6.3447|orf6.7159|CA1790|orf19.6895|CaO19.12671|CaO19.5204|IPF13971	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr2	1191685	1193410	+	orf19.5205	1191685	1193410	1	1191685	1193410	1191791	1193236		orf19.12672|IPF22008.1|IPF13967.2|Contig4-2237_0004|orf6.3448|CA1791|CaO19.5205|CaO19.12672|IPF13967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1192756	1194832	-	orf19.5206	1192756	1194832	1	1194832	1192756	1194799	1193270		orf19.12673|IPF22007.1|IPF13966.2|Contig4-2237_0005|orf6.3449|CA1792|CaO19.12673|CaO19.5206|IPF13966	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1194941	1196453	+	orf19.5207	1194941	1196453	1	1194941	1196453	1194984	1196264		orf19.12674|orf19.12675|IPF22014.1|IPF22015.1|IPF18608.1|Contig4-3052_0031|orf6.3450|orf6.3451|CA1793|CA1794|orf19.5208|IPF18608.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1196131	1198624	-	orf19.5209	1196131	1198624	1	1198624	1196131	1198572	1196257		orf19.12676|IPF21999.1|IPF11261.2|Contig4-3052_0001|orf6.3452|CA1795|COG6|CaO19.12676|CaO19.5209|IPF11261	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1198860	1200667	-	orf19.5210	1198860	1200667	1	1200667	1198860	1200658	1198925		orf19.12677|IPF22005.1|IPF11259.2|Contig4-3052_0003|orf6.3453|CA1796|CaO19.5210|XBP1|CaO19.12677|IPF11259	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1200847	1201081	-	ntar_397	1200847	1201081	1	1201081	1200847					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1204022	1204562	+	orf19.5210.1	1204022	1204562	2	1204022|1204394	1204330|1204562	1204193	1204522			 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1204447	1205923	-	orf19.5211	1204447	1205923	1	1205923	1204447	1205852	1204551	IDP1	orf19.12678|IPF22009.1|IPF5863.2|Contig4-3052_0006|Contig4-3052_0007|orf6.3902|CA2131|CaO19.5211|CaO19.12678	Protein described as isocitrate dehydrogenase; transcriptionally induced by interaction with macrophage; alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1206499	1207661	+	orf19.5212	1206499	1207661	2	1206499|1206703	1206640|1207661	1206499	1207661		orf19.12679|IPF22011.1|IPF5865.2|Contig4-3052_0008|orf6.3903|CA2132|IPF5865	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1208069	1211114	+	orf19.5213	1208069	1211114	1	1208069	1211114	1208528	1210972		orf19.12680|IPF21998.1|IPF5866.2|Contig4-3052_0009|orf6.3904|CA2133|CaO19.12680|CaO19.5213|IPF5866	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1211037	1211577	-	orf19.5213.1	1211037	1211577	1	1211577	1211037	1211519	1211238	COX8	IPF22018.1|IPF5867.1|Contig4-3052_0010|CA2134	ORF Predicted by Annotation Working Group; flucytosine induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1211829	1212297	+	orf19.5213.2	1211829	1212297	1	1211829	1212297	1211893	1212078	COX9	orf19.12680.2|IPF22003.1|IPF5868.1|Contig4-3052_0012|CA2135	Putative subunit VIIa of cytochrome c oxidase; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1212198	1214457	-	orf19.5214	1212198	1214457	1	1214457	1212198	1214402	1212306	VPS33	orf19.12681|IPF22002.1|IPF5870.2|Contig4-3052_0015|Contig4-3052_0016|orf6.3905|CA2136|CaO19.12681|CaO19.5214	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Vps33p, which is the product of a class C vacuolar protein sorting (vps) gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1214644	1215805	-	orf19.5215	1214644	1215805	1	1215805	1214644	1215750	1214689	TES15	orf19.12682|IPF22010.1|IPF5871.2|Contig4-3052_0018|orf6.3906|CA6220|CaO19.5215|TES5|CaO19.12682	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1216054	1217144	-	orf19.5216	1216054	1217144	1	1217144	1216054	1217011	1216115		orf19.12683|IPF22013.1|IPF5873.2|Contig4-3052_0020|orf6.3907|CA6221|TES4|CaO19.5216|CaO19.12683|TES14	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1217465	1218735	-	orf19.5217	1217465	1218735	1	1218735	1217465	1218631	1217735	TES1	orf19.12684|IPF22012.1|IPF5876.2|Contig4-3052_0022|orf6.3908|CA6222|CaO19.5217|TES3|CaO19.12684|TES13	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1219063	1220235	-	orf19.4122	1219063	1220235	1	1220235	1219063	1220133	1219153		orf19.12685|orf19.11605|IPF23166.1|IPF5877.2|IPF22017.1|IPF18535.1|Contig4-3052_0024|orf6.3191|orf6.3909|CA1608|orf19.5218|TES2|CaO19.4122|TES12	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1221356	1222701	-	orf19.4121	1221356	1222701	1	1222701	1221356	1222609	1221455		orf19.11603|IPF23150.1|IPF5879.2|Contig4-3052_0027|orf6.3192|CA1609|TES1|CaO19.11603|CaO19.4121|TES11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1223164	1224899	+	orf19.4120	1223164	1224899	1	1223164	1224899	1223378	1224856	LAS1	orf19.11602|IPF23142.1|IPF5882.2|Contig4-3052_0028|orf6.3193|CA1610|CaO19.4120|CaO19.11602	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU); macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1225226	1231170	+	orf19.4119	1225226	1231170	1	1225226	1231170	1225442	1231012	SPO72	orf19.11601|IPF23167.1|IPF12198.2|Contig4-2495_0008|orf6.3194|CA1611|ATG2|CaO19.4119|CaO19.11601	Protein similar to S. cerevisiae sporulation protein; up-regulation associated with azole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1232558	1234668	+	orf19.4118	1232558	1234668	1	1232558	1234668	1232842	1234668	CNT	orf19.11600|NNT1|IPF12201|IPF12201.2|IPF2129.3|Contig4-2495_0005|orf6.6818|orf6.804|CA0189|NNT99|CaO19.4118	Cation-coupled nucleoside transporter (H(+)/nucleoside symporter); CNT family; transports adenosine, uridine, inosine, guanosine, tubercidin; variant alleles encode high- and low-affinity isoforms; S or G at residue 328 affects specificity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1234865	1236445	+	orf19.4117	1234865	1236445	1	1234865	1236445	1234911	1236344		orf19.11599|IPF2127.3|IPF23159.1|IPF2127.2|Contig4-2528_0002|orf6.6819|orf6.805|CA4309|CaO19.4117	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1236255	1237905	-	orf19.4116	1236255	1237905	1	1237905	1236255	1237627	1236356		orf19.11597|IPF2125|IPF23145.1|IPF2125.2|Contig4-2528_0003|orf6.6820|CA4310|CaO19.4116|CaO19.11597	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1237930	1238003	-	tm(cau)3	1237930	1238003	1	1238003	1237930				tM(CAU)3.2	tRNA-Met predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1238541	1238873	-	orf19.4115	1238541	1238873	1	1238873	1238541	1238873	1238541		orf19.11596|IPF23175.1|IPF28528.1|Contig4-2528_0004|orf6.6821|CaO19.11596|CaO19.4115	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1239011	1241424	+	orf19.4114	1239011	1241424	1	1239011	1241424	1239137	1241290	FAA2-1	orf19.11595|IPF23135.1|IPF2123.2|Contig4-2528_0006|orf6.6822|CA4311|FAA23|CaO19.4114|FAA22|CaO19.11595	Predicted long chain fatty acid CoA ligase; upregulated upon phagocytosis; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1241349	1242562	-	orf19.4112	1241349	1242562	1	1242562	1241349	1242471	1241554		orf19.11593|IPF23154.1|IPF2122.2|Contig4-2528_0007|orf6.6824|CA4312|CaO19.11593|CaO19.4112|IPF2122	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1242653	1245923	+	orf19.4110	1242653	1245923	1	1242653	1245923	1242656	1245784		orf19.11591|IPF23186.1|IPF2121.2|Contig4-2950_0020|orf6.6826|CA4313|CaO19.4110|CaO19.11591|IPF2121	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1246095	1248544	+	orf19.4109	1246095	1248544	1	1246095	1248544	1246154	1248421	PMT4	orf19.11590|IPF23133.1|IPF2115.1|Contig4-2950_0002|orf6.6827|CA4314|CaO19.4109|CaO19.11590	Protein mannosyltransferase required for normal cell wall composition and full virulence in mouse systemic infection; has roles in hyphal growth and drug sensitivity; one of 5 PMT family members; Axl2p is a substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1248635	1250131	+	orf19.4107	1248635	1250131	1	1248635	1250131	1248733	1249938		orf19.11588|IPF23148.1|IPF2112.1|Contig4-2950_0003|orf6.6829|CA4315|CaO19.11588|PPX1|CaO19.4107	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1249637	1250990	-	orf19.4106	1249637	1250990	1	1250990	1249637	1250990	1249944		orf19.11587|IPF23151.1|IPF2111.1|Contig4-2950_0005|orf6.6830|CA4316|CaO19.4106|CaO19.11587|IPF2111	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	1251151	1252265	+	orf19.4105	1251151	1252265	1	1251151	1252265	1251180	1252130		orf19.11586|IPF23153.1|IPF2109.1|Contig4-2950_0006|orf6.6831|CA4317|CaO19.4105|CaO19.11586|IPF2109	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1252155	1253759	-	orf19.4104	1252155	1253759	1	1253759	1252155	1253759	1252155		orf19.11585|IPF23140.1|IPF2106.2|Contig4-2950_0009|orf6.6832|CA4318|CaO19.11585|CaO19.4104|IPF2106	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1253966	1254973	-	orf19.4102	1253966	1254973	1	1254973	1253966	1254864	1254025	RPN10	orf19.11583|IPF23155.1|IPF2104.2|Contig4-2950_0011|orf6.6834|CA4319|CaO19.11583|CaO19.4102	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1255116	1255670	+	orf19.4101	1255116	1255670	1	1255116	1255670	1255179	1255487		orf19.11582|IPF23185.1|IPF2103.1|Contig4-2950_0015|orf6.6835|CaO19.11582|CaO19.4101	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1255595	1260098	-	orf19.4099	1255595	1260098	1	1260098	1255595	1260036	1255723	ECM17	orf19.11580|orf19.12932|MET5|IPF23129.1|IPF2102.1|IPF21658.1|IPF13588.2|Contig4-2950_0017|orf6.6837|orf6.4171|CA4320|orf19.5477|CaO19.4099|CaO19.11580	Predicted enzyme of sulfur amino acid biosynthesis; putative role in regulation of cell wall biogenesis; upregulated in biofilm; possibly adherence-induced; regulated by Tsa1p, Tsa1Bp under H2O2 stress; Gcn4p-regulated; Tbf1p-activated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1260637	1261785	-	orf19.5479	1260637	1261785	1	1261785	1260637	1261785	1260637	FGR12	orf19.12934|IPF21669.1|IPF13586.2|Contig4-2950_0018|orf6.4173|CA2317|CaO19.12934|CaO19.5479|IPF13586	[NOT TRANSCRIBED?] Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1262881	1264865	+	orf19.5480	1262881	1264865	1	1262881	1264865	1262982	1264691	ILV1	orf19.12935|IPF21664.1|IPF16147.2|orf6.4174|CA2318|CaO19.5480|CaO19.12935	Protein described as threonine dehydratase; regulated by Gcn4p and Gcn2p; induced in response to amino acid starvation (3-aminotriazole treatment); protein detected by mass spec in both exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1264634	1266784	-	orf19.5483	1264634	1266784	1	1266784	1264634	1266764	1264800		orf19.12938|IPF21662.1|IPF19755.1|Contig4-2604_0002|orf6.4177|CA2319|CaO19.5483|GUF1|CaO19.12938	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1266791	1268221	-	orf19.5484	1266791	1268221	1	1268221	1266791	1268118	1266940	SER1	orf19.12939|IPF21668.1|IPF10985.1|Contig4-2604_0003|orf6.4178|CA2320|CaO19.12939|CaO19.5484	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1268292	1269454	-	orf19.5485	1268292	1269454	1	1269454	1268292	1269317	1268358	MEC3	orf19.12940|IPF21670.1|IPF10984.1|Contig4-2604_0005|orf6.4179|CA2321|CaO19.12940|CaO19.5485	Increased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1268355	1269089	+	ntar_398	1268355	1269089	1	1268355	1269089					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1269397	1272052	+	orf19.5486	1269397	1272052	1	1269397	1272052	1269397	1272009		orf19.12941|IPF21656.1|IPF10981.1|Contig4-2604_0006|orf6.4180|CA2322|CaO19.12941|YSH1|CaO19.5486	Putative protein of unknown function; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1272120	1272674	+	orf19.5486.1	1272120	1272674	2	1272120|1272286	1272208|1272674	1272204	1272619	SMD2	IPF21683.1|IPF10980.2|Contig4-2604_0007|CA2323	ORF Predicted by Annotation Working Group; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1272629	1275020	-	orf19.5487	1272629	1275020	1	1275020	1272629	1274900	1272714	CDC46	orf19.12942|IPF21660.1|IPF10979.2|Contig4-2604_0008|orf6.4181|CA2324|MCM5|CaO19.5487|CaO19.12942	Protein described as having role in control of cell division; periodic mRNA expression, peak at cell-cycle M/G1 phase; regulated by tyrosol and cell density; Plc1p-regulated; repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1275206	1275970	+	orf19.5488	1275206	1275970	1	1275206	1275970	1275300	1275815		orf19.12943|IPF21677.1|IPF10977.2|Contig4-2604_0010|orf6.4182|CA2325|CaO19.12943|CaO19.5488|IPF10977	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1276040	1277236	+	orf19.5489	1276040	1277236	1	1276040	1277236	1276040	1277236		orf19.12944|orf19.12945|IPF21675.1|IPF5831.2|IPF5832.3|IPF5833.2|Contig4-2947_0024|Contig4-2947_0026|orf6.4183|orf6.4184|orf6.4667|orf19.5490|CaO19.5489|CaO19.12944	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); merged with orf19.5490 in Assembly 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1276539	1278440	-	orf19.5491	1276539	1278440	1	1278440	1276539	1278420	1277233		orf19.12946|IPF5834.2|IPF28015.1|Contig4-2947_0022|orf6.4185|orf6.4666|CA2678|CaO19.5491|IPF5834	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1278572	1279615	-	orf19.5491.1	1278572	1279615	2	1279615|1279059	1279435|1278572	1279452	1278751	ATP14	IPF21688.1|IPF5835.2|Contig4-2947_0021|CA2677|ATP14.exon2	ORF Predicted by Annotation Working Group; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1279749	1280489	+	orf19.5492	1279749	1280489	1	1279749	1280489	1279836	1280288		orf19.12947|IPF21681.1|IPF5838.1|Contig4-2947_0019|orf6.4665|CA2676|CaO19.12947|YHC1|CaO19.5492	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1280448	1281446	-	orf19.5493	1280448	1281446	1	1281446	1280448	1281391	1280747	GSP1	orf19.12948|orf6.4664|IPF21672.1|IPF5839.2|Contig4-2947_0017|CA2675|CaO19.5493|CaO19.12948	Small RAN G-protein; essential; prenylation not predicted; overproduction complements viability of S. cerevisiae gsp1 mutant; macrophage/pseudohyphal-induced; not transcriptionally regulated during white-opaque or yeast-hyphal switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1285008	1288717	+	orf19.5495	1285008	1288717	1	1285008	1288717	1285343	1288609		orf19.12950|IPF5846|IPF21686.1|IPF5846.1|Contig4-2947_0012|orf6.4662|CA2674|CaO19.5495|CaO19.12950	Protein not essential for viability; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1288873	1290753	-	orf19.5496	1288873	1290753	1	1290753	1288873	1290576	1288969	AVT1	orf19.12951|IPF21666.1|IPF5849.1|Contig4-2947_0008|Contig4-2947_0010|orf6.4661|CA2673|AVT12|CaO19.5496|CaO19.12951|IPF5849	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1295452	1297614	+	orf19.5498	1295452	1297614	1	1295452	1297614	1295452	1297614	EFH1	orf19.12953|IPF21661.1|IPF5855.2|Contig4-2947_0001|orf6.4659|CA2672|PHD1|CaO19.5498|CaO19.12953	Transcriptional activator; minor role in transcriptional regulation, compared to Efg1p; regulates filamentous growth, phenotypic switching; homodimerizes; has APSES domain and acidic region; EFG1 and EFH1 genetically interact [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1297898	1299340	-	orf19.5499	1297898	1299340	1	1299340	1297898	1299340	1297898		orf19.12954|IPF21663.1|IPF5856.2|orf6.4658|CA2671|CaO19.5499|HPD99|CaO19.12954|IPF5856	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1299982	1301074	-	orf19.5500	1299982	1301074	1	1301074	1299982	1301008	1300061	MAK16	orf19.12955|IPF21671.1|IPF5859.3|Contig4-1385_0002|Contig4-1385_0003|orf6.4657|CA2670|CaO19.12955|CaO19.5500|IPF5859.2	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1301213	1301942	-	orf19.17	1301213	1301942	1	1301942	1301213	1301909	1301325	SCP1	orf19.7688|IPF3874.2|IPF29979.1|CA6167|CaO19.17	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1302279	1304262	-	orf19.18	1302279	1304262	2	1304262|1303454	1303702|1302279	1304152	1302340	IMH3	orf19.7689|orf19.7690|IPF3873.2|IPF27224.1|IPF29977.1|IPF3872.2|orf6.2651|orf6.2652|CA1246|orf19.19|IMD3|CA1245|IMH3.exon2|IMH3.exon1	Inosine monophosphate (IMP) dehydrogenase; enzyme of GMP biosynthesis; target of mycophenolic acid and mizoribine monophosphate; antigenic during human or murine infection; soluble protein in hyphae; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1304498	1305034	-	ntar_399	1304498	1305034	1	1305034	1304498					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1305469	1308672	-	orf19.20	1305469	1308672	1	1308672	1305469	1308223	1305671	RTS1	orf19.7691|IPF27207.1|IPF3870.2|Contig4-3047_0003|orf6.2653|CA1247|CaO19.7691|CaO19.20|IPF3870	Transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1309292	1310574	-	orf19.21	1309292	1310574	1	1310574	1309292	1310415	1309828		orf19.7692|IPF3866.2|IPF29978.1|Contig4-3047_0007|orf6.2654|CA1248|SYM1|CaO19.21|CaO19.7692|IPF3866	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1310594	1311612	-	orf19.22	1310594	1311612	1	1311612	1310594	1311518	1310784		orf19.7693|orf6.5916|IPF18727.2|IPF3865.2|Contig4-3047_0009|orf6.2655|CA3605|CaO19.22|CaO19.7693|IPF3865	Transcription is positively regulated by Sfu1p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1312455	1313376	-	orf19.22.1	1312455	1313376	1	1313376	1312455	1313376	1313245			Pseudogene; added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1314793	1316527	+	orf19.23	1314793	1316527	1	1314793	1316527	1314829	1316223	RTA3	orf19.7694|YOR49|Contig4-3047_0020|IPF27215.1|IPF3859.1|orf6.5917|CA3606|CaO19.7694|RSB13|CaO19.23	Similar to S. cerevisiae Rta1p (role in 7-aminocholesterol resistance) and Rsb1p (flippase); putative membrane protein; putative drug-responsive regulatory site; induced by fluphenazine, estradiol, ketoconazole, caspofungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1317012	1318635	+	orf19.24	1317012	1318635	1	1317012	1318635	1317228	1318589	RTA2	orf19.7695|IPF27216.1|IPF3858.1|Contig4-3047_0022|orf6.5918|CA3607|CaO19.24|RSB11|CaO19.7695	Putative floppase; required for sphingolipid long chain base release; mediates calcineurin-dependent resistance to azoles; stress-associated protein; Ca2+, calcineurin-regulated; ketoconazole, caspofungin induced; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1318251	1318525	-	ntar_400	1318251	1318525	1	1318525	1318251	1318465	1318298			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1318764	1319825	+	orf19.25	1318764	1319825	1	1318764	1319825	1318802	1319773		orf19.7696|IPF27221.1|IPF3857.1|Contig4-3047_0024|orf6.5919|CA3608|CaO19.25|TRM10|CaO19.7696|IPF3857	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1319941	1321285	+	orf19.26	1319941	1321285	1	1319941	1321285	1320001	1321188		orf19.7697|IPF3856.1|Contig4-3047_0025|orf6.5920|CA3609|PNG1|CaO19.7697|CaO19.26|IPF3856	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1321524	1321610	+	ti(aau)1	1321524	1321610	2	1321524|1321575	1321561|1321610				tI(AAU)1.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1321782	1323275	+	orf19.27	1321782	1323275	2	1321782|1321998	1321934|1323275	1321872	1323179		orf19.7698|IPF27218.1|IPF3854.1|Contig4-3047_0026|orf6.5921|CA3610|CaO19.7698|CaO19.27|IPF3854	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1323140	1324209	-	orf19.28	1323140	1324209	1	1324209	1323140	1324126	1323221		orf19.7699|IPF27222.1|IPF3853.1|Contig4-3047_0028|orf6.5922|CA3611|CaO19.7699|TPC1|CaO19.28|IPF3853	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1324472	1325671	+	orf19.29	1324472	1325671	1	1324472	1325671	1324614	1325585		orf19.7700|IPF27220.1|IPF3852.2|Contig4-3047_0029|orf6.5923|CA3612|CaO19.29|CaO19.7700|IPF3852	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1325625	1329456	-	orf19.30	1325625	1329456	1	1329456	1325625	1329398	1325727		orf19.7701|IPF27225.1|IPF3849.2|Contig4-1545_0001|orf6.5924|CA3613|CaO19.7701|SPF1|CaO19.30	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1329655	1331921	+	orf19.31	1329655	1331921	1	1329655	1331921	1330987	1331742		orf19.7702|IPF27223.1|IPF8878.1|Contig4-2679_0003|orf6.5925|CA3614|CaO19.7702|CIS302|CaO19.31|IPF8878	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1332397	1333426	-	ntar_401	1332397	1333426	1	1333426	1332397	1332952	1332647			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1332535	1333254	+	ntar_402	1332535	1333254	1	1332535	1333254					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1333727	1334061	+	ntar_403	1333727	1334061	1	1333727	1334061	1333727	1333990			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1334306	1335865	-	orf19.34	1334306	1335865	1	1335865	1334306	1335865	1334306		orf19.7705|orf6.5928|IPF18890.2|IPF8874.2|Contig4-2679_0007|orf6.1824|GIT1|CA3615|CaO19.34	Putative permease of glycerophosphoinositol import; fungal-specific (no human or murine homolog); transcription is negatively regulated by Rim101p; virulence-group-correlated expression [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1334617	1334939	+	ntar_404	1334617	1334939	1	1334617	1334939					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1335175	1335896	+	ntar_405	1335175	1335896	1	1335175	1335896	1335175	1335300			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1338354	1338530	-	ntar_406	1338354	1338530	1	1338530	1338354					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1340755	1344452	+	orf19.35	1340755	1344452	1	1340755	1344452	1341035	1344079		orf19.7708|IPF13398.2|IPF19358.2|Contig4-2637_0007|Contig4-2637_0009|Contig4-2637_0013|orf6.1821|orf6.286|CA0724|SKY2|CaO19.35|IPF13398	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1344430	1344831	-	ntar_407	1344430	1344831	1	1344831	1344430					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1345070	1345723	+	ntar_408	1345070	1345723	1	1345070	1345723					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1345203	1345445	-	orf19.35.1	1345203	1345445	1	1345445	1345203	1345445	1345203			[NOT TRANSCRIBED?] ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1346906	1348705	+	orf19.36	1346906	1348705	1	1346906	1348705	1347014	1348291		orf19.7709|IPF27217.1|IPF13402.1|Contig4-2637_0001|orf6.608|CA0131|CaO19.7709|COG8|CaO19.36|IPF13402	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1348588	1349050	-	ntar_409	1348588	1349050	1	1349050	1348588					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1349755	1350211	-	orf19.36.1	1349755	1350211	1	1350211	1349755	1350101	1349895			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1350873	1354374	-	orf19.1295	1350873	1354374	1	1354374	1350873	1354350	1350991	VAS1	orf19.8875|IPF26041.1|IPF13980.2|Contig4-1984_0003|orf6.295|orf6.921|CA0223|CaO19.1295	Putative tRNA-Val synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1354596	1356462	-	orf19.1296	1354596	1356462	1	1356462	1354596	1356380	1354671		orf19.8876|IPF26039.1|IPF13982.2|orf6.922|CA0224|orf19.82|CaO19.8876|PRP31|CaO19.1296	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1356590	1357476	+	orf19.81	1356590	1357476	1	1356590	1357476	1356640	1357449		Contig4-2678_0013|RRP46|CaO19.81	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1357787	1360292	-	orf19.1223	1357787	1360292	1	1360292	1357787	1360034	1357902	DBF2	orf19.8809|IPF26112.1|IPF13853.2|Contig4-1569_0001|orf6.851|CA0205|CaO19.8809|CaO19.1223	Essential serine/threonine protein kinase involved in mitotic spindle formation and cytokinesis; required for septum formation, exit from mitosis, and normal hyphal morphogenesis; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1360849	1361141	+	ntar_410	1360849	1361141	1	1360849	1361141					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1363018	1363746	-	ntar_411	1363018	1363746	1	1363746	1363018	1363433	1363296			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1364081	1364265	-	ntar_412	1364081	1364265	1	1364265	1364081					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1364998	1366305	+	orf19.1224	1364998	1366305	1	1364998	1366305	1365218	1366075	FRP3	orf19.8810|IPF13846.3|IPF16160.1|Contig4-2326_0009|orf6.1315|orf6.361|CA0415|AFF1|CaO19.1224	Upregulated in the presence of human neutrophils; fluconazole-downregulated; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1365324	1365655	-	ntar_413	1365324	1365655	1	1365655	1365324					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1366723	1367815	-	orf19.1225	1366723	1367815	1	1367815	1366723	1367676	1367053		orf19.8811|IPF26113.1|IPF17492.2|Contig4-2326_0011|orf6.1316|CA0416|CaO19.1225|IPF17492	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1368033	1368182	-	ntar_414	1368033	1368182	1	1368182	1368033					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1368172	1368440	+	ntar_415	1368172	1368440	1	1368172	1368440					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1368286	1368456	-	ntar_416	1368286	1368456	1	1368456	1368286					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1368934	1369590	+	ntar_417	1368934	1369590	1	1368934	1369590					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1369866	1370269	+	ntar_418	1369866	1370269	1	1369866	1370269					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1370217	1370606	-	ntar_419	1370217	1370606	1	1370606	1370217					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1371575	1373800	+	orf19.3152	1371575	1373800	1	1371575	1373800	1371756	1373771	AMO2	orf19.10662|IPF24146.1|IPF15803.2|orf6.1742|CA0673|CaO19.3152|CaO19.10662|CA0145|IPF11449|IPF11449.1|IPF15803.1	Protein similar to A. niger predicted peroxisomal copper amino oxidase; mutation confers hypersensitivity to toxic ergosterol analog; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1374507	1375872	+	orf19.3151	1374507	1375872	1	1374507	1375872	1374602	1375768		orf19.10661|Contig4-2902_0012|IPF24148.1|IPF15804.2|orf6.1741|CA0672|CaO19.3151|CaO19.10661|GRP6	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1375822	1375994	-	ntar_420	1375822	1375994	1	1375994	1375822					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1376208	1377575	+	orf19.3150	1376208	1377575	1	1376208	1377575	1376462	1377499	GRE2	orf19.10660|orf6.1740|Contig4-2831_0003|GRP4|IPF15555.2|IPF28876.1|CA0671|CaO19.3150|GRE23|CaO19.10660	Protein described as a reductase; transcription is regulated by Nrg1p and Tup1p; benomyl-induced; hyphal-induced; macrophage/pseudohyphal-repressed; expression greater in low iron; reported to be involved in osmotic stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1377438	1378626	-	ntar_421	1377438	1378626	1	1378626	1377438					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1378021	1378295	+	ntar_422	1378021	1378295	1	1378021	1378295					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1379374	1380783	+	orf19.3149	1379374	1380783	1	1379374	1380783	1379510	1380463	LSP1	orf19.10659|IPF15552.2|IPF14171.2|Contig4-2831_0005|orf6.1659|CA0622|SLB2|CaO19.3149|CaO19.10659|IPF14171	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed; biofilm induced; fungal-specific (no human or murine homolog); protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1382161	1382403	-	ntar_423	1382161	1382403	1	1382403	1382161	1382331	1382161			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1383122	1385985	+	orf19.3148	1383122	1385985	1	1383122	1385985	1383313	1385898		orf19.10658|IPF14168.3|IPF17999.2|Contig4-2831_0010|Contig4-2831_0011|orf6.1658|orf6.19|CA0621|CaO19.3148|IPF17999	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1386116	1387078	-	orf19.3147	1386116	1387078	1	1387078	1386116	1387030	1386290		orf19.10657|IPF24149.1|IPF17998.2|orf6.1657|CA0620|CaO19.3147|IPF17998	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1387415	1388952	-	orf19.2227	1387415	1388952	1	1388952	1387415	1388799	1387549		orf19.10656|orf19.9769|IPF25081.1|IPF9051.2|IPF18923.2|IPF18924.1|Contig4-2341_0001|orf6.1320|orf6.1656|CA0418|CA0619|orf19.3146|CaO19.2227|STC99|CaO19.9769|IPF9051.5eoc	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1389102	1390562	+	orf19.2228	1389102	1390562	1	1389102	1390562	1389157	1390380		orf19.9770|IPF25058.1|IPF19864.1|Contig4-2341_0006|orf6.1321|CA0419|CaO19.2228|TWF1|CaO19.9770|IPF19864	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1390436	1392220	-	orf19.2229	1390436	1392220	1	1392220	1390436	1392124	1390478		orf19.9771|IPF25048.1|IPF9048.1|Contig4-2341_0007|orf6.1322|CA0420|CaO19.2229|CaO19.9771|IPF9048	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1392276	1392986	+	orf19.2230	1392276	1392986	1	1392276	1392986	1392405	1392764		orf19.9772|IPF25091.1|IPF9047.1|IPF9047|Contig4-2341_0009|orf6.1323|CA0421|CaO19.9772|CaO19.2230	Decreased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1392803	1394144	-	orf19.2231	1392803	1394144	1	1394144	1392803	1393616	1392837		orf19.9773|IPF25069.1|IPF9046.1|Contig4-2341_0010|orf6.1324|CA0422|CaO19.2231|CaO19.9773|IPF9046	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1395032	1395289	+	ntar_424	1395032	1395289	1	1395032	1395289	1395032	1395190			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1395424	1396672	-	orf19.2232	1395424	1396672	2	1396672|1396123	1396517|1395424	1396519	1395602	RPL11	orf19.9774|IPF25080.1|IPF9044.1|RPL11B|Contig4-2838_0014|orf6.1888|CA0763	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1396815	1397827	-	orf19.2233	1396815	1397827	1	1397827	1396815	1397736	1396879	PRE2	orf19.9775|IPF25065.1|IPF9042.1|Contig4-2838_0012|orf6.1889|CA0764|CaO19.2233|CaO19.9775	Protein described as beta-5 subunit of proteasome; macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1398009	1401876	-	orf19.2236	1398009	1401876	1	1401876	1398009	1401601	1398143		orf19.9778|orf6.1892|IPF9040.3|IPF29164.1|Contig4-2838_0010|orf6.2396|CA0765|FHL1|CaO19.2236|IPF9040|IPF9040.3eoc|IPF9040.2	Protein with forkhead domain; similar to Fhl1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1402483	1404060	+	orf19.2237	1402483	1404060	1	1402483	1404060	1402483	1404060	SPR1	orf19.9779|IPF25049.1|IPF19900.1|Contig4-2838_0007|Contig4-2838_0008|orf6.2395|CA1078|CaO19.2237|CaO19.9779	[NOT TRANSCRIBED?] Putative GPI-anchored protein; not essential for viability; similar to S. cerevisiae Spr1p, which is a sporulation-specific exo-1,3-beta-glucanase [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1404335	1405431	+	orf19.2237.1	1404335	1405431	2	1404335|1404449	1404374|1405431	1404372	1405051		CA6201|IPF13696|orf19.9779.1	Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1404975	1405387	-	ntar_425	1404975	1405387	1	1405387	1404975	1405161	1405030			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1406377	1406698	-	ntar_426	1406377	1406698	1	1406698	1406377					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1407128	1412407	+	orf19.2238	1407128	1412407	1	1407128	1412407	1407349	1412304	LTE1	orf19.9780|orf19.9781|IPF25036.1|IPF13694.2|IPF25034.1|IPF19721.1|Contig4-2781_0024|Contig4-2838_0001|Contig4-2838_0002|orf6.2394|orf6.2393|CA1077|CA1076|orf19.2239|CaO19.9780|LTE99|CaO19.2238|IPF13694	Protein similar to S. cerevisiae Lte1p; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1412405	1413598	-	orf19.2241	1412405	1413598	1	1413598	1412405	1413266	1412670	PST1	IPF17954.2|IPF18769.1|Contig4-2561_0001|orf6.1034|orf6.2391|CA6202|IPF18769	Protein described as 1,4-benzoquinone reductase; biofilm induced; hyphal-induced expression, regulated by Cyr1p, Ras1p, Efg1p, Nrg1p, Rfg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1413904	1415464	-	orf19.2242	1413904	1415464	1	1415464	1413904	1415365	1413968	PRB1	orf19.9783|orf6.1035|PRB2|IPF12896.2|IPF29156.1|Contig4-2561_0002|orf6.2390|CA0270|CaO19.2242|PRB11	Putative endoprotease B; regulated by heat, carbon source (GlcNAc-induced), nitrogen, macrophage response, human neutrophils; putative D200-H232-S389 catalytic triad; similar to (but does not replace) S. cerevisiae vacuolar B protease Prb1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1415533	1416799	-	orf19.2244	1415533	1416799	1	1416799	1415533	1416704	1415745		orf19.9785|orf6.1037|IPF12897.2|IPF29158.1|Contig4-2561_0004|CA0271|CaO19.9785|CaO19.2244|IPF12897	Similar to oxidoreductases and to S. cerevisiae Yjr096wp; transcription is negatively regulated by Sfu1p; increased transcription is observed upon benomyl treatment; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1417314	1418481	+	orf19.2245	1417314	1418481	1	1417314	1418481	1417737	1418390	YPT72	IPF19068.2|IPF12899.1|Contig4-2561_0005|orf6.5901|CA3593|CaO19.2245|YPT7|YPT71	Vacuolar Rab small monomeric GTPase involved in vacuolar biogenesis; involved in filamentous growth and virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1418444	1419337	-	orf19.2246	1418444	1419337	1	1419337	1418444	1419303	1418533		orf19.9786|IPF25072.1|IPF12900.2|Contig4-2561_0008|orf6.5900|CA3592|CaO19.9786|CaO19.2246|IPF12900	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1419523	1421182	-	orf19.2247	1419523	1421182	1	1421182	1419523	1421082	1419556		orf19.9787|IPF25051.1|IPF12902.2|Contig4-2561_0011|orf6.5899|CA3591|AQR4|CaO19.2247|CaO19.9787|IFT2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1422333	1424494	-	orf19.2248	1422333	1424494	1	1424494	1422333	1424342	1422513	ARE2	orf19.9788|IPF10109.2|IPF10110.1|Contig4-2290_0009|orf6.5898|CA3590|CaO19.9788|CaO19.2248	Acyl CoA:sterol acyltransferase (ASAT); uses cholesterol and oleoyl-CoA substrates; protoberberine derivative drug inhibits enzyme activity; 7 putative transmembrane regions; ketoconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1425716	1426270	+	ntar_427	1425716	1426270	1	1425716	1426270					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1426268	1427184	-	orf19.2249	1426268	1427184	1	1427184	1426268	1427146	1426430		orf19.9789|IPF25071.1|IPF10113.1|Contig4-2290_0005|orf6.5897|CA3589|CaO19.2249|CaO19.9789|IPF10113	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1427521	1427693	-	ntar_428	1427521	1427693	1	1427693	1427521					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1427894	1428894	+	orf19.2250	1427894	1428894	1	1427894	1428894	1427916	1428809	SPE3	orf19.9790|IPF25063.1|IPF10115.1|Contig4-2104_0003|Contig4-2104_0004|orf6.5896|CA3588|CaO19.9790|CaO19.2250	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1429245	1430669	+	orf19.2251	1429245	1430669	1	1429245	1430669	1429343	1430413	AAH1	orf19.9791|IPF25061.1|IPF10117.2|Contig4-2104_0002|orf6.5895|orf6.307|CA3587|CaO19.2251	Protein not essential for viability; similar to S. cerevisiae Aah1p, which is an adenine deaminase involved in purine salvage and nitrogen catabolism; shows colony morphology-related gene regulation by Ssn6p; Hog1p-, biofilm-, CO2-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1431742	1433280	+	orf19.2252	1431742	1433280	1	1431742	1433280	1431742	1433280		orf19.9792|IPF10120.2|IPF15939.1|Contig4-2665_0008|orf6.306|orf6.5894|CA3586|AQR2|CaO19.2252|IFT3	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1434439	1436393	+	orf19.2253	1434439	1436393	1	1434439	1436393	1434609	1436165		orf19.9793|IPF25047.1|IPF16720.2|Contig4-2665_0006|orf6.5893|CA3585|CaO19.9793|AQR3|CaO19.2253|IFT1	Predicted ORF in Assemblies 19, 20 and 21; expression is regulated upon white-opaque switching; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1436527	1437412	+	orf19.2256	1436527	1437412	1	1436527	1437412	1436602	1437294		orf19.9796|IPF25074.1|IPF15468.1|Contig4-2665_0004|orf6.5890|CA3584|CaO19.2256|CaO19.9796|IPF15468	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1437525	1438858	+	orf19.2257	1437525	1438858	2	1437525|1437643	1437574|1438858	1437525	1438696		orf19.9797|IPF25062.1|IPF20137.1|Contig4-2665_0002|orf6.5889|CA3583|IPF20137	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1438715	1440038	-	orf19.2258	1438715	1440038	1	1440038	1438715	1440036	1438852		orf19.9798|IPF25059.1|IPF15466.2|Contig4-2665_0001|orf6.5888|CA3582|CaO19.9798|CaO19.2258|IPF15466	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1440120	1441126	-	orf19.2259	1440120	1441126	1	1441126	1440120	1441079	1440264		orf19.9799|IPF25066.1|IPF16143.2|Contig4-2843_0021|orf6.5887|CA3581|CaO19.9799|CaO19.2259|IPF16143	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1441244	1442493	+	orf19.2260	1441244	1442493	1	1441244	1442493	1441294	1442382		orf19.9800|IPF25060.1|IPF16141.2|Contig4-2843_0020|orf6.5886|CA3580|CaO19.2260|CaO19.9800|IPF16141	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1442729	1443813	+	orf19.2261	1442729	1443813	1	1442729	1443813	1442849	1443628		orf19.9801|IPF25070.1|IPF11104.2|Contig4-2843_0018|orf6.5885|CA3579|CaO19.9801|SAP49|CaO19.2261|HSH49	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1443868	1445064	+	orf19.2262	1443868	1445064	1	1443868	1445064	1443868	1445022		orf19.9802|IPF25057.1|IPF11105.2|Contig4-2843_0016|orf6.5884|CA3578|ZTA1|CaO19.2262|CaO19.9802|IPF11105	Predicted ORF in Assemblies 19, 20 and 21; similar to quinone oxidoreductases; increased transcription is observed upon benomyl treatment; induced by nitric oxide; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1444949	1445650	-	orf19.2263	1444949	1445650	1	1445650	1444949	1445592	1445053		orf19.9803|IPF25078.1|IPF11106.2|Contig4-2843_0015|orf6.5883|CA3577|CaO19.9803|CaO19.2263|IPF11106	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1445813	1447522	-	orf19.2264	1445813	1447522	1	1447522	1445813	1447461	1445881	OLE2	orf19.9804|IPF25050.1|IPF11107.2|Contig4-2843_0012|orf6.5882|CA3576|CaO19.2264|CaO19.9804|IPF11107	Protein with similarity to fatty acid desaturase (stearoyl-CoA desaturase); homozygous null mutant shows decreased production of prostaglandin E2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1447733	1449304	+	orf19.2265	1447733	1449304	1	1447733	1449304	1447816	1449225		orf19.9805|IPF25054.1|IPF11108.2|Contig4-2843_0011|orf6.5881|CA3575|CaO19.9805|SNF12|CaO19.2265|IPF11108	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1449267	1452371	-	orf19.2266	1449267	1452371	1	1452371	1449267	1451856	1449364		orf19.9806|IPF19585.2|IPF19584.1|Contig4-2843_0009|orf6.436|orf6.5880|CA3574|CaO19.2266|IPF19584	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1452359	1453480	+	orf19.2267	1452359	1453480	1	1452359	1453480	1452518	1453336	RFA2	orf19.9807|IPF19276.2|IPF13308.1|Contig4-2843_0008|orf6.435|orf6.5879|CA3573|CaO19.2267	Protein described as DNA replication factor A; RNA abundance regulated by cell cycle, tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1453580	1456061	-	orf19.2268	1453580	1456061	1	1456061	1453580	1455586	1453817	RCK2	orf19.9808|IPF19933.1|IPF29154.1|Contig4-2843_0002|Contig4-2843_0005|orf6.3573|CA1881|CaO19.2268|CA3572|IPF18321|IPF18321.1	Predicted MAP kinase-activated protein kinase, similar to S. cerevisiae serine/threonine protein kinase Rck2p; induced by osmotic stress via Hog1p; macrophage/pseudohyphal-repressed; mutants are sensitive to rapamycin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1457791	1458762	+	orf19.2269	1457791	1458762	1	1457791	1458762	1457877	1458614		orf19.9809|IPF25073.1|IPF13316.2|Contig4-1520_0002|orf6.3572|CA1880|CaO19.2269|CaO19.9809|IPF13316	Putative 3-phosphoserine phosphatase; fungal-specific (no human or murine homolog); increased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1459808	1461938	+	orf19.2270	1459808	1461938	1	1459808	1461938	1460029	1461783	SMF12	orf19.9810|SMF1|IPF25043.1|IPF19747.1|orf6.3571|CA1879|SMF11|CaO19.2270|CaO19.9810	Protein not essential for viability; similar to S. cerevisiae Smf1p, which is a manganese transporter; Gcn4p-regulated; alkaline upregulated; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1461961	1464974	-	orf19.2272	1461961	1464974	1	1464974	1461961	1464540	1462144		orf19.9812|IPF25037.1|IPF10298.2|Contig4-2395_0001|Contig4-3049_0034|orf6.3569|CA1878|CaO19.9812|CaO19.2272|IPF10298	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1465810	1466280	-	ntar_429	1465810	1466280	1	1466280	1465810					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1466424	1467253	+	orf19.2274	1466424	1467253	1	1466424	1467253	1466424	1467170		orf19.9814|IPF25067.1|IPF10300.1|Contig4-3049_0033|orf6.3567|CA1877|CaO19.2274|CaO19.9814|IPF10300	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1467224	1467961	-	orf19.2275	1467224	1467961	1	1467961	1467224	1467917	1467393		orf19.9815|IPF25079.1|IPF10301.1|Contig4-3049_0031|orf6.3566|CA1876|CaO19.9815|MRPL12|CaO19.2275|IPF10301	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1468381	1469099	+	orf19.2276	1468381	1469099	1	1468381	1469099	1468475	1468813		orf19.9816|IPF25086.1|IPF10302.1|Contig4-3049_0028|orf6.3565|CA1875|CaO19.2276|RPB9|CaO19.9816	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1468962	1471046	-	orf19.2277	1468962	1471046	1	1471046	1468962	1470574	1469240	TPK2	orf19.9817|IPF25055.1|IPF10304.1|Contig4-3049_0025|Contig4-3049_0027|orf6.3564|CA1874|CaO19.2277|CaO19.9817	Catalytic subunit of cAMP-dependent protein kinase (PKA), isoform of Tpk1p; required for wild-type epithelial cell damage and engulfment and oral (not systemic) virulence in mouse; involved in control of morphogenesis and stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1472318	1473350	+	orf19.2278	1472318	1473350	1	1472318	1473350	1472371	1473165		orf19.9818|IPF25068.1|IPF10309.2|Contig4-3049_0021|orf6.3563|orf6.997|CA0256|CaO19.2278|IPF10309	Predicted ORF in Assemblies 19, 20 and 21; filament induced; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1473290	1476239	-	orf19.2280	1473290	1476239	1	1476239	1473290	1476115	1473350		ZCF10|orf19.9820|IPF25032.1|IPF10084.3|Contig4-3049_0020|orf6.2248|orf6.999|CA0257|CaO19.2280|QUA1|IPF10079|IPF10084.2	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1476933	1478435	-	orf19.2281	1476933	1478435	1	1478435	1476933	1478435	1476933		orf19.9821|IPF25052.1|IPF10077.2|Contig4-3049_0014|orf6.2249|CA0994|OCA99|CaO19.9821|CaO19.2281|IPF10077	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	1477074	1477303	+	ntar_430	1477074	1477303	1	1477074	1477303					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1479147	1480139	-	orf19.2282	1479147	1480139	1	1480139	1479147	1480139	1479147		orf19.9822|IPF10074.1|IPF18758.2|Contig4-3049_0013|orf6.2250|CA1112|HQD1|CaO19.2282|IPF18758|CA0995|IPF10074|IPF18758.5eoc|IPF18758.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1480399	1481121	-	orf19.2283	1480399	1481121	1	1481121	1480399	1481049	1480609	DQD1	orf19.9823|IPF10071.2|IPF29159.1|Contig4-3049_0012|orf6.2251|orf6.2443|CA0996|CaO19.2283|DQD99|IPF10071	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-repressed; macrophage-downregulated protein abundance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1481279	1482571	+	orf19.2284	1481279	1482571	1	1481279	1482571	1481535	1482554		orf19.9824|IPF9998.2|IPF29157.1|Contig4-3049_0010|orf6.2252|orf6.2444|CA0997|CaO19.2284|IPF9998	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1482795	1484489	+	orf19.2285	1482795	1484489	1	1482795	1484489	1482795	1484489		orf19.9825|IPF18802.2|IPF9996.2|IPF9996|Contig4-3049_0008|orf6.2253|orf6.2445|CA1113|CaO19.2285	Increased transcription is observed upon benomyl treatment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1484678	1485766	+	orf19.2286	1484678	1485766	1	1484678	1485766	1484709	1485665		orf19.9826|IPF25064.1|IPF9995.2|Contig4-3049_0005|orf6.2446|CA1114|CaO19.2286|CaO19.9826|IPF9995	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-induced; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1485576	1486270	-	orf19.2287	1485576	1486270	1	1486270	1485576	1486119	1485748	RPA12	orf19.9827|IPF25090.1|IPF9993.2|Contig4-3049_0004|orf6.2447|CA1115|CaO19.9827|CaO19.2287	Protein described as DNA-directed RNA polymerase I; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1486708	1488488	+	orf19.2288	1486708	1488488	1	1486708	1488488	1486767	1488413	CCT5	orf19.9828|IPF25045.1|IPF9991.2|Contig4-3049_0003|orf6.2448|CA1116|CaO19.9828|CaO19.2288	Predicted ORF in Assemblies 19, 20 and 21. Protein detected by mass spec in exponential and stationary phase cultures. [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1488664	1490121	+	orf19.2289	1488664	1490121	1	1488664	1490121	1488790	1490049	ARP3	orf19.9829|IPF25056.1|IPF9988.2|Contig4-3049_0002|orf6.2449|CA1117|CaO19.9829|CaO19.2289	Predicted ORF in Assemblies 19, 20 and 21; shows Myo5p-dependent localization to cortical actin patches at hyphal tip; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1490220	1497830	+	orf19.2290	1490220	1497830	1	1490220	1497830	1490298	1497746	TOR1	orf19.9459|orf19.9461|orf19.9830|TOR|IPF25458.1|IPF9719.2|IPF25075.1|IPF9987.3|Contig4-3049_0001|orf6.7015|orf6.7017|orf6.2450|CA4469|CA4468|CA1118|orf19.1905|orf19.1903|TOR2|CaO19.9830|CaO19.2290|IPF9987|IPF9987.2	Protein similar to TOR family phosphatidylinositol kinases; mutation confers resistance to rapamycin; involved in regulation of ribosome biogenesis, starvation response, and adhesion [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1497536	1498402	-	ntar_431	1497536	1498402	1	1498402	1497536					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1498568	1500426	+	orf19.1902	1498568	1500426	1	1498568	1500426	1498605	1500293	NOC4	orf19.9458|IPF25429.1|IPF9717.2|Contig4-2752_0016|orf6.7018|CA4470|CaO19.1902|CaO19.9458|IPF9717	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1500527	1503368	+	orf19.1901	1500527	1503368	1	1500527	1503368	1500642	1503278	MCM3	orf19.9457|IPF25419.1|IPF9716.2|Contig4-2752_0015|orf6.7019|CA4471|CaO19.9457|CaO19.1901	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle M/G1 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1503512	1505015	+	orf19.1900	1503512	1505015	1	1503512	1505015	1503549	1505000		orf19.9456|IPF25434.1|IPF6444.2|Contig4-2752_0013|orf6.7020|CA4472|CaO19.9456|TGS1|CaO19.1900|IPF6444	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1505184	1506687	+	orf19.1897	1505184	1506687	1	1505184	1506687	1505373	1506407		orf19.9453|IPF25441.1|IPF6447.1|Contig4-2752_0011|orf6.7023|CA4473|CaO19.1897|CaO19.9453|IPF6447	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1506924	1509168	+	orf19.1896	1506924	1509168	1	1506924	1509168	1506984	1508930	SSC1	orf19.9452|IPF25425.1|IPF6450.2|Contig4-2752_0006|Contig4-2752_0008|orf6.7024|CA4474|CaO19.9452|CaO19.1896	Heat shock protein; at surface of yeast-form cells, but not hyphae; antigenic; soluble in hyphae; Gcn4p-regulated; induced upon amino acid starvation (3-aminotriazole) or upon adherence to polystyrene; macrophage-downregulated protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1509123	1511663	-	orf19.1893	1509123	1511663	1	1511663	1509123	1511607	1509238		orf19.9449|IPF25421.1|IPF6455.2|Contig4-2189_0003|Contig4-2752_0004|Contig4-2752_0005|orf6.7027|CA4475|CaO19.9449|CaO19.1893|IPF6455	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1511949	1513510	-	orf19.1891	1511949	1513510	1	1513510	1511949	1513476	1512217	1-Apr	orf19.9447|orf6.7029|PRA|IPF25433.1|IPF6456.2|Contig4-2189_0002|CA4476|PEP4|CaO19.9447|CaO19.1891	Vacuolar aspartic proteinase; mRNA abundance is equivalent in yeast-form and mycelial cells but is elevated at lower growth temperatures; upregulated in the presence of human neutrophils; detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1514612	1516368	+	orf19.1890	1514612	1516368	1	1514612	1516368	1514712	1516178		orf19.9446|IPF25432.1|IPF6459.1|orf6.7030|CA4477|CaO19.1890|CaO19.9446|IPF6459	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1516487	1518153	+	orf19.1889	1516487	1518153	1	1516487	1518153	1516534	1517256		orf19.9445|IPF25444.1|IPF6461.2|orf6.7031|CA4478|CaO19.9445|CaO19.1889|IPF6461	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1517186	1518429	-	orf19.1888	1517186	1518429	1	1518429	1517186	1518360	1517368		orf19.9444|IPF25442.1|IPF6462.1|Contig4-2743_0009|orf6.7032|CA4479|CaO19.1888|URH1|CaO19.9444	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1519006	1521165	-	orf19.1887	1519006	1521165	1	1521165	1519006	1520960	1519257		orf19.9443|IPF25430.1|IPF6464.2|Contig4-2743_0008|orf6.7033|CA4480|CaO19.9443|CaO19.1887|IPF6464	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1521327	1522778	-	orf19.1886	1521327	1522778	1	1522778	1521327	1522721	1521606	RCL1	orf19.9442|IPF25440.1|IPF9148.2|Contig4-2743_0006|orf6.190|orf6.7034|CA0027|CaO19.1886	Predicted ORF in Assemblies 19, 20 and 21; essential; downregulated during core stress response; S. cerevisiae ortholog is essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1523032	1523225	-	ntar_432	1523032	1523225	1	1523225	1523032					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1523327	1524541	+	orf19.1885	1523327	1524541	1	1523327	1524541	1523380	1524471	TAF4	orf19.9441|IPF9150.1|IPF29273.1|Contig4-2743_0004|orf6.7035|CA4481|CaO19.1885|IPF9150	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1524685	1528364	+	orf19.1883	1524685	1528364	1	1524685	1528364	1524754	1528272	YCS4	orf19.9439|IPF25461.1|IPF9154.2|Contig4-2743_0002|orf6.7037|CA4482|CaO19.9439|CaO19.1883|IPF9154	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1528438	1530759	+	orf19.1881	1528438	1530759	1	1528438	1530759	1528522	1530330		orf19.9437|IPF25428.1|IPF9156.2|orf6.7039|CA4483|CaO19.9437|CaO19.1881|IPF9156	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1530847	1532335	+	orf19.1880	1530847	1532335	1	1530847	1532335	1531048	1532208	HEM15	orf19.9436|orf6.7040|IPF25439.1|IPF9158.2|Contig4-3010_0023|Contig4-3010_0024|CA4484|CaO19.1880|CaO19.9436	Putative ferrochelatase involved in heme biosynthesis; transcription is not regulated by iron levels and is also not affected by a yfh1 null mutation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1532191	1533427	-	orf19.1878	1532191	1533427	1	1533427	1532191	1533274	1532303		orf19.9434|IPF25443.1|IPF9160.2|Contig4-3010_0022|orf6.7042|CA4485|CaO19.1878|CaO19.9434|IPF9160	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1533448	1534361	+	orf19.1877	1533448	1534361	1	1533448	1534361	1533526	1534341		orf19.9433|IPF25445.1|IPF9162.2|Contig4-3010_0019|orf6.7043|CA4486|CaO19.1877|CaO19.9433|IPF9162	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1534226	1535819	-	orf19.1876	1534226	1535819	1	1535819	1534226	1535696	1534338		orf19.9432|IPF25435.1|IPF4039.2|Contig4-3010_0018|orf6.7044|CA4487|NAM8|CaO19.9432|CaO19.1876|IPF4039	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1535827	1537231	-	orf19.1874	1535827	1537231	2	1537231|1536549	1536617|1535827	1537231	1535827		orf19.9430|orf19.9431|IPF4042.2|IPF25446.1|IPF29274.1|IPF4041.1|Contig4-3010_0012|Contig4-3010_0014|Contig4-3010_0015|orf6.7045|orf6.7046|CA4489|CA4488|orf19.1875|MEK.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1537831	1538460	+	orf19.1873	1537831	1538460	1	1537831	1538460	1537876	1538208		orf19.9429|IPF4044.1|IPF17567.2|Contig4-3010_0011|orf6.282|orf6.7047|CaO19.1873	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1538659	1539580	+	orf19.1872	1538659	1539580	1	1538659	1539580	1538720	1539355		orf19.9428|IPF4045.1|IPF17566.1|Contig4-3010_0010|orf6.283|orf6.7048|CA4490|CaO19.1872|IPF4045	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1539834	1544891	+	orf19.1871	1539834	1544891	1	1539834	1544891	1539900	1544825		orf19.9427|IPF4050.2|IPF29275.1|Contig4-3010_0009|orf6.284|orf6.7049|CA4491|SWR1|CaO19.1871	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1544803	1545121	-	ntar_433	1544803	1545121	1	1545121	1544803	1545121	1544816			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1546030	1547657	+	orf19.1868	1546030	1547657	1	1546030	1547657	1546130	1547314	RNR22	orf19.9424|IPF25438.1|IPF4053.1|Contig4-3010_0006|orf6.7052|CA4492|RNR2|CaO19.9424|CaO19.1868	Protein described as ribonucleoside diphosphate reductase; shows colony morphology-related gene regulation by Ssn6p; RNA abundance regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1547722	1549012	-	ntar_434	1547722	1549012	1	1549012	1547722					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1547799	1548998	+	orf19.1867	1547799	1548998	1	1547799	1548998	1547799	1548998		orf19.9423|MAE1|IPF25437.1|IPF4055.2|Contig4-3010_0003|Contig4-3010_0005|orf6.7053|CA4493|CaO19.9423|SSU12|CaO19.1867|IPF4055	Putative malate permease; induced during macrophage infection; regulated by Gcn2p and Gcn4p; has putative peroxisome targeting signal [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1549217	1549848	+	orf19.1866	1549217	1549848	1	1549217	1549848	1549286	1549627		orf19.9422|IPF25457.1|IPF4056.2|Contig4-3010_0002|orf6.7054|CA4494|VMA10|CaO19.9422|CaO19.1866|VMA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1549721	1551909	-	orf19.1865	1549721	1551909	1	1551909	1549721	1551800	1549956		orf19.9421|IPF25426.1|IPF4059.1|Contig4-3010_0001|orf6.7055|CA4495|CaO19.9421|CaO19.1865|IPF4059	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1551994	1554467	-	orf19.1864	1551994	1554467	1	1554467	1551994	1554414	1552255		orf19.9420|IPF4062.2|IPF19004.2|Contig4-3010_0027|orf6.1264|orf6.7056|CA4496|CaO19.1864|IPF4062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1554724	1556511	+	orf19.1863	1554724	1556511	1	1554724	1556511	1554724	1556511		orf19.9419|IPF4064.2|IPF19005.1|Contig4-2502_0003|orf6.1263|orf6.7057|CA4497|CaO19.1863|IPF4064.5f|IPF4064	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1556446	1557148	-	orf19.1862	1556446	1557148	1	1557148	1556446	1556975	1556610		orf19.9418|IPF4065|orf6.1262|IPF18208.2|IPF4065.1|Contig4-2502_0004|CA0386|CaO19.1862	Possible stress protein; increased transcription is associated with CDR1 and CDR2 overexpression or fluphenazine treatment; transcription regulated by Sfu1p, Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1558217	1560347	+	orf19.1861	1558217	1560347	1	1558217	1560347	1558356	1560230		orf19.9417|orf19.9763|IPF25427.1|IPF4071.2|IPF25109.1|IPF29169.1|orf6.1261|orf6.4263|CA0385|orf19.2218|CaO19.1861|CaO19.9417|IPF4071	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1560045	1561799	-	orf19.1860.1	1560045	1561799	1	1561799	1560045	1561733	1560333		orf19.9762|IPF25116.1|IPF4072.2|orf6.1260|orf6.4262|CA2380|orf19.2217	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1562001	1566104	+	orf19.2216	1562001	1566104	1	1562001	1566104	1562086	1565997	PDS5	orf19.9761|IPF25164.1|IPF4073.2|Contig4-1620_0001|orf6.4261|CA2379|CaO19.9761|CaO19.2216|IPF4073	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1566003	1567818	-	orf19.2215	1566003	1567818	1	1567818	1566003	1567634	1566132	GLE1	orf19.9760|IPF25118.1|IPF15261.2|Contig4-1620_0004|Contig4-1620_0006|orf6.4260|CA2378|CaO19.2215|CaO19.9760	Predicted ORF in Assemblies 19, 20 and 21; moderately induced at 42 deg [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1568280	1569283	+	orf19.2214	1568280	1569283	1	1568280	1569283	1568309	1569172		orf19.9759|IPF25143.1|IPF15259.2|Contig4-2359_0006|orf6.4259|CA2377|CaO19.2214|MRPL7|CaO19.9759	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1569348	1571259	+	orf19.2213	1569348	1571259	1	1569348	1571259	1569408	1570772		orf19.9758|IPF25122.1|IPF15506.2|Contig4-2359_0005|orf6.4258|CA2376|CaO19.2213|CaO19.9758|IPF15506	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1570837	1571154	-	orf19.2212	1570837	1571154	1	1571154	1570837	1571154	1570837		orf19.9757|IPF25170.1|IPF15505.1|Contig4-2359_0004|orf6.4257|CaO19.9757|CaO19.2212	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1571396	1572238	+	orf19.2211	1571396	1572238	1	1571396	1572238	1571396	1572238		orf19.9756|IPF25144.1|IPF15504.1|Contig4-2359_0003|orf6.4256|CA2375|CaO19.2211|CaO19.9756|IPF15504	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1572187	1574465	-	orf19.2210	1572187	1574465	1	1574465	1572187	1574362	1572314		orf19.9755|IPF19934.2|IPF29168.1|Contig4-2359_0002|Contig4-3058_0002|orf6.3574|orf6.4255|CA1882|CaO19.2210|IPF19934|IPF19934.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1577333	1579918	+	orf19.2209	1577333	1579918	1	1577333	1579918	1577496	1579523	YVC1	orf19.9754|IPF25104.1|IPF5479.2|Contig4-3058_0005|orf6.3575|CA1883|CaO19.2209|CaO19.9754|IPF5479	Protein similar to S. cerevisiae Yvc1p; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1580453	1585143	+	orf19.2208	1580453	1585143	1	1580453	1585143	1580742	1584941		orf19.9753|IPF25161.1|IPF5486.2|Contig4-3058_0008|Contig4-3058_0011|orf6.3576|CA1884|CaO19.9753|CaO19.2208|IPF5486	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1585488	1586493	+	orf19.2204.2	1585488	1586493	1	1585488	1586493	1585831	1586394		IPF25102.1|IPF5490.1|Contig4-3058_0013|CA1886|RHO2.3f	ORF Predicted by Annotation Working Group (see Locus History Note for Assembly 19 correction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1586528	1586713	-	ntar_435	1586528	1586713	1	1586713	1586528					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1587269	1588883	+	orf19.2204	1587269	1588883	1	1587269	1588883	1587418	1588800		orf19.9749|IPF25125.1|IPF5496.1|Contig4-3058_0014|Contig4-3058_0015|Contig4-3058_0016|orf6.3580|CA1887|CaO19.2204|CaO19.9749|IPF5496	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1587271	1589344	-	orf19.2203.1	1587271	1589344	1	1589344	1587271	1589275	1588979			ORF added to Assembly 21 based on comparative genome analysis; overlaps dubious orf19.2203  [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1589241	1589558	+	orf19.2203	1589241	1589558	1	1589241	1589558	1589241	1589558		IPF29181.1|orf6.4338|CaO19.2203	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1589495	1590404	-	orf19.2202	1589495	1590404	1	1590404	1589495	1590300	1589575		orf19.9748|IPF18594.1|IPF5498.1|Contig4-3058_0019|orf6.3581|orf6.4339|CA1888|CaO19.2202|IPF18594	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1591011	1591579	+	orf19.2201	1591011	1591579	1	1591011	1591579	1591049	1591387		orf19.9747|IPF18593.2|IPF5499.1|Contig4-3058_0021|orf6.3582|orf6.4340|CA1889|CBP6|CaO19.9747|CaO19.2201|IPF18593.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1591783	1593333	+	orf19.2200	1591783	1593333	1	1591783	1593333	1591892	1593202		orf19.9746|IPF25130.1|IPF5500.2|Contig4-3058_0024|orf6.4341|CA2436|CaO19.2200|CaO19.9746|IPF5500	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1593203	1594444	-	orf19.2199	1593203	1594444	1	1594444	1593203	1594358	1593351	PHO86	orf19.9745|IPF25140.1|IPF5501.1|Contig4-3058_0025|orf6.4342|CA2437|CaO19.9745|CaO19.2199	Predicted ORF in Assemblies 19, 20 and 21; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1595405	1598157	+	orf19.2198	1595405	1598157	1	1595405	1598157	1595730	1597886	FLC3	orf19.9744|IPF25103.1|IPF5505.2|Contig4-3058_0030|orf6.4343|CA2438|CaO19.2198|CFP3|CaO19.9744|IPF5505	Protein involved in heme uptake; putative FAD transporter, similar to S. cerevisiae Flc3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1598856	1600358	+	orf19.2197	1598856	1600358	1	1598856	1600358	1598856	1600358		orf19.9743|IPF25119.1|IPF7514.2|Contig4-3058_0032|orf6.4344|CA2439|CaO19.2197|CaO19.9743|IPF7514	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1600445	1600516	-	tm(cau)2	1600445	1600516	1	1600516	1600445				tM(CAU)2.2	tRNA-Met predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1600726	1601001	-	ntar_436	1600726	1601001	1	1601001	1600726	1601001	1600834			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1600892	1602515	+	orf19.2196	1600892	1602515	1	1600892	1602515	1601015	1602379		orf19.9742|IPF25128.1|IPF7513.2|Contig4-3058_0034|orf6.4345|CA2440|CaO19.2196|CUE3|CaO19.9742|IPF7513	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1601392	1601934	-	orf19.2195	1601392	1601934	1	1601934	1601392	1601934	1601392		IPF25151.1|IPF7512.2|orf6.4346	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1602543	1604088	+	orf19.2194	1602543	1604088	1	1602543	1604088	1602661	1604073		orf19.9740|IPF25124.1|IPF7509.2|Contig4-3058_0036|orf6.4347|CA2441|CaO19.2194|APM4|CaO19.9740	Phosphorylated protein of unknown function; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1604322	1605862	+	orf19.2193	1604322	1605862	1	1604322	1605862	1604375	1605715	PRS5	orf19.9739|IPF25123.1|IPF7507.2|Contig4-3058_0037|orf6.4348|CA2442|CaO19.9739|CaO19.2193	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1607145	1607567	+	ntar_437	1607145	1607567	1	1607145	1607567	1607368	1607502			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1608078	1611798	+	orf19.2192	1608078	1611798	1	1608078	1611798	1608435	1611605	GDH2	orf19.9738|IPF19745.1|IPF29185.1|Contig4-2073_0005|Contig4-2073_0006|Contig4-2075_0005|orf6.3428|CA1775|CaO19.2192	Putative NAD-specific glutamate dehydrogenase; fungal-specific (no human or murine homolog); transcription is regulated by Nrg1p, Mig1p, Tup1p, and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1611591	1612121	-	orf19.2191.1	1611591	1612121	1	1612121	1611591	1612089	1611913			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1612141	1613410	+	orf19.2191	1612141	1613410	1	1612141	1613410	1612254	1613291		orf19.9737|IPF25137.1|IPF7498.2|Contig4-2075_0002|orf6.3427|CA1774|CaO19.9737|CaO19.2191|IPF7498	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1613227	1615337	-	orf19.2190	1613227	1615337	1	1615337	1613227	1615337	1613343	VRP1	orf19.9736|IPF25107.1|IPF12461.2|orf6.3426|CA1773|CaO19.2190|CaO19.9736	Protein described as verprolin; downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1615450	1617290	-	orf19.2187	1615450	1617290	1	1617290	1615450	1617026	1615542	ALG7	orf19.9733|IPF25121.1|IPF12460.2|Contig4-2452_0003|orf6.3423|CA1772|CaO19.2187|CaO19.9733	Protein involved in cell wall mannan biosynthesis; mutation confers hypersensitivity to tunicamycin; transcription is elevated in chk1, nik1, and sln1 homozygous null mutants [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1617552	1618731	+	orf19.2186	1617552	1618731	1	1617552	1618731	1617552	1618595		orf19.9732|IPF25138.1|IPF12458.2|Contig4-2452_0004|orf6.3422|CA1771|CaO19.9732|SEH1|CaO19.2186	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1618129	1619838	-	orf19.2185	1618129	1619838	1	1619838	1618129	1619808	1618588	NSA1	orf19.9731|IPF25132.1|IPF12457.2|Contig4-2452_0006|orf6.3421|CA1770|CaO19.2185|CaO19.9731|IPF12457	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1620320	1620406	+	ti(aau)2	1620320	1620406	2	1620320|1620371	1620357|1620406				tI(AAU)2.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1620484	1621590	+	orf19.2184	1620484	1621590	1	1620484	1621590	1620567	1621463		orf19.9730|IPF12454.2|IPF5534.2|Contig4-2452_0008|orf6.3420|orf6.6079|CA3735|FAH2|CaO19.2184|IPF5534|IPF5534.1	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1621657	1621915	+	ta(agc)1	1621657	1621915	1	1621657	1621915	1621693	1621860		tA(AGC)1.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1621783	1623771	-	orf19.2183	1621783	1623771	1	1623771	1621783	1623732	1621903	KRE30	orf19.9729|IPF25112.1|IPF5533.2|Contig4-3057_0002|orf6.6080|CA3736|CaO19.2183|CaO19.9729|IPF5533	YEF3-subfamily ABC family protein, predicted not to be a transporter; downregulated during core stress response; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1624632	1631501	+	orf19.2182	1624632	1631501	1	1624632	1631501	1624806	1631408	BLM3	orf19.9728|IPF25148.1|IPF5529.1|Contig4-3057_0004|Contig4-3057_0005|orf6.6081|CA3737|CaO19.2182|CaO19.9728	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Blm10p; transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1631407	1633104	-	orf19.2180	1631407	1633104	1	1633104	1631407	1632775	1631660		orf19.9726|IPF25136.1|IPF5526.1|Contig4-3057_0008|orf6.6083|CA3738|CaO19.9726|CaO19.2180|IPF5526	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1632310	1632840	+	orf19.2181	1632310	1632840	1	1632310	1632840	1632310	1632840		IPF25147.1|IPF5525.1|orf6.6082|CaO19.2181|CaO19.9727	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1633229	1634190	-	orf19.2179.2	1633229	1634190	2	1634190|1633750	1634070|1633229	1634121	1633446	RPS10	IPF25168.1|IPF5524.1|Contig4-3057_0011|Contig4-3057_0012|CA3739|RPS10.3	Predicted ribosomal protein; downregulated in the presence of human whole blood or polymorphonuclear (PMN) cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1634521	1636374	-	orf19.2179	1634521	1636374	1	1636374	1634521	1636365	1634551	SIT1	orf19.9725|ARN1|orf6.6084|YHL040C|IPF25111.1|IPF5522.1|Contig4-3057_0013|CA3740|CaO19.2179|CaO19.9725	Transporter of ferrichrome siderophores, but not ferrioxamine B; required for wild-type invasion of human epithelial cells in vitro, but not for wild-type systemic virulence in mouse; transcription regulated by iron, Sfu1p, Rfg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1637875	1638802	+	orf19.2178.1	1637875	1638802	1	1637875	1638802	1638462	1638671			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1638712	1640343	-	orf19.2178	1638712	1640343	1	1640343	1638712	1639848	1638871		orf19.9724|IPF25142.1|IPF5513.1|Contig4-3057_0017|orf6.6085|CA3741|CaO19.2178|MRS3|CaO19.9724|MRS4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1640878	1642598	-	orf19.2176	1640878	1642598	1	1642598	1640878	1642014	1640977	IFM3	orf19.9722|IPF25139.1|IPF5511.1|Contig4-3057_0018|orf6.6087|CA3742|CaO19.2176|CaO19.9722	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1641445	1641981	+	orf19.2177	1641445	1641981	1	1641445	1641981	1641445	1641981		IPF25150.1|IPF5510.1|orf6.6086	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1642714	1644066	+	orf19.2175	1642714	1644066	1	1642714	1644066	1642904	1644007		orf19.9721|IPF25135.1|IPF19998.1|Contig4-3057_0019|Contig4-3057_0021|Contig4-3057_0022|orf6.6088|CA3743|CPD1|CaO19.9721|CaO19.2175|IPF19998	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1644189	1645792	+	orf19.2174	1644189	1645792	1	1644189	1645792	1644238	1645773	RAD57	orf19.9720|IPF25120.1|IPF10144.2|Contig4-3057_0023|orf6.6089|CA3744|CaO19.9720|CaO19.2174	Essential protein; described as having role in DNA recombination, repair; transcriptionally induced by interaction with macrophage; transcription is regulated by Nrg1p, Mig1p, and Tup1p; S. cerevisiae ortholog is essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1646076	1647749	+	orf19.2173	1646076	1647749	2	1646076|1646397	1646211|1647749	1646206	1647533	MAF1	orf19.9719|IPF25133.1|IPF10146.2|Contig4-3057_0024|orf6.6090|CA3745	Protein described as affecting nucleocytoplasmic transport and synthesis of RNA Polymerase III; decreased expression in hyphae compared to yeast-form cells; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1647969	1649352	+	orf19.2172	1647969	1649352	1	1647969	1649352	1648100	1649080	ARA1	orf19.9718|IPF25141.1|IPF10148.2|Contig4-3057_0027|orf6.6091|CA3746|CaO19.9718|CaO19.2172	D-Arabinose dehydrogenase; in dehydro-D-arabinono-1,4-lactone biosynthesis; NADP+ cofactor; active toward D-arabinose, L-fucose, L-xylose, L-galactose; inhibited by metal ions, thiol group-specific reagents; induced on polystyrene adherence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1649270	1652438	-	orf19.2170	1649270	1652438	1	1652438	1649270	1652255	1649472	PHM7	orf19.9716|IPF25099.1|IPF10153.2|Contig4-3057_0029|orf6.6093|CA3747|CaO19.2170|IPF10153	Putative transporter; fungal-specific (no human or murine homolog); Hog1p-downregulated; downregulated in response to 17-beta-estradiol, ethynyl estradiol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1654307	1655002	+	orf19.2169	1654307	1655002	1	1654307	1655002	1654307	1655002		orf19.9715|IPF16181.3|IPF29176.1|orf6.1806|orf6.6094|CA6200|CaO19.2169|IPF29176	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1655000	1655889	-	orf19.2168.3	1655000	1655889	2	1655889|1655618	1655776|1655000	1655826	1655148		IPF13710.3|IPF16182.1|Contig4-2572_0016|CA6199|IPF16182	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1656164	1656976	+	ntar_438	1656164	1656976	1	1656164	1656976	1656355	1656555			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1657091	1658434	+	orf19.2168	1657091	1658434	1	1657091	1658434	1657091	1658434		orf19.9714|IPF25127.1|IPF13715.1|Contig4-2572_0010|orf6.1805|CA0713|CaO19.9714|AES2|CaO19.2168|IFJ2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1658481	1660192	-	orf19.2167	1658481	1660192	2	1660192|1660034	1660118|1658481	1660135	1658682		orf19.9713|IPF25129.1|IPF13717.1|Contig4-2572_0007|orf6.1804|CA0712|CaO19.9713|CaO19.2167|IPF13717	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1660573	1662192	+	orf19.2166	1660573	1662192	1	1660573	1662192	1660762	1661928		orf19.9712|IPF13718.3|IPF29174.1|Contig4-2572_0004|orf6.1314|orf6.1803|CA0711|VMA5|CaO19.2166|IPF13718.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1662341	1663624	+	orf19.2165	1662341	1663624	1	1662341	1663624	1662652	1663488		orf19.9711|IPF16630.3|IPF25145.1|IPF29175.1|Contig4-2572_0003|orf6.754|orf6.1313|CA6233|CA6198|orf19.1125|CaO19.9711|HWH3|CaO19.2165|IPF29175	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1663802	1663930	-	orf19.2164.1	1663802	1663930	1	1663930	1663802	1663930	1663802	MFA1		Mating pheromone, a-factor; produced in opaque MTLa cells; required for mating competence of MTLa cells, but not MTLalpha; induced by alpha-factor [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1665815	1669441	+	orf19.2219	1665815	1669441	1	1665815	1669441	1665815	1669441	ORF298	orf19.9710|orf19.9764|IPF25169.1|IPF4068.2|IPF25165.1|IPF29182.1|Contig4-2502_0009|Contig4-2502_0010|orf6.1312|orf6.4264|POL|CA0414|orf19.2164|POL94|CaO19.9764|CaO19.2219	Predicted ORF in retrotransposon Tca3 with similarity to Gag-Pol, which encodes nucleocapsid-like protein, reverse transcriptase, protease, and integrase; transcription is a-specific, alpha-factor induced; mRNA binds to She3p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1670638	1670949	+	orf19.2220	1670638	1670949	1	1670638	1670949	1670638	1670949		orf19.9765|IPF25157.1|IPF11641.1|orf6.4265|CaO19.2220|CaO19.9765	Predicted ORF in Assemblies 19, 20 and 21; induced by Rgt1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1671059	1673062	-	orf19.2222	1671059	1673062	1	1673062	1671059	1672713	1671577		orf19.9766|orf19.9767|YCK3|IPF25134.1|IPF11643.2|Contig4-2626_0009|orf6.4266|orf6.4267|CA2381|CA2382|orf19.2221|YCK22|CaO19.2222|CaO19.9767|YCK3.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1673269	1674806	+	orf19.2660	1673269	1674806	1	1673269	1674806	1673425	1674534	EAF3	IPF11644|IPF18475.1|IPF11644.3|Contig4-2626_0007|orf6.1465|CA0496|orf19.2222.1|ALP13|CaO19.2660|IPF11644.2	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1675679	1676610	-	orf19.1354	1675679	1676610	1	1676610	1675679	1676610	1676005	UCF1	orf19.8934|orf6.1218|IPF20056|IPF20056.1|IPF20057.1|Contig4-1837_0007|Contig4-2626_0005|orf6.1464|YER67|CA0495|orf19.2659|CaO19.8934|CaO19.1354	Putative protein of unknown function; mRNA binds to She3p; transcription is induced in high iron, decreased upon yeast-hyphal switch; downregulation correlates with clinical development of fluconazole resistance; Ras1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1676646	1677182	-	orf19.1353	1676646	1677182	1	1677182	1676646	1677182	1676646		orf19.8933|IPF25986.1|IPF11646.2|Contig4-1837_0006|Contig4-2626_0004|orf6.1217|CA0368|CaO19.8933|CaO19.1353|IPF11646	Predicted ORF in Assemblies 19, 20 and 21; transcription downregulated upon yeast-hyphal switch; Ras1p-regulated [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1678087	1679225	+	orf19.1352	1678087	1679225	1	1678087	1679225	1678514	1679068		orf19.8932|IPF25985.1|IPF16416.2|IPF18964.1|Contig4-1837_0001|orf6.1216|orf6.1463|CA0367|orf19.2658|CaO19.8932|TIM22|CaO19.1352	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1679118	1680025	-	orf19.1351	1679118	1680025	1	1680025	1679118	1679940	1679200		orf19.8931|IPF19017.1|IPF19081.2|orf6.1215|orf6.978|CA0366|CaO19.1351|IPF19017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1681554	1682898	+	orf19.1350	1681554	1682898	1	1681554	1682898	1681722	1682720		orf19.8930|IPF19616.2|IPF19617.1|Contig4-3000_0026|orf6.1214|orf6.979|CA0249|CaO19.1350|IPF19617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1683047	1683487	-	orf19.1349	1683047	1683487	1	1683487	1683047	1683487	1683047		orf19.8929|IPF25987.1|IPF9726.2|Contig4-3000_0024|Contig4-3000_0025|orf6.980|CaO19.1349|CaO19.8929	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1684575	1685138	-	orf19.1348	1684575	1685138	1	1685138	1684575	1685138	1684575		orf19.12588|orf19.8928|IPF25984.1|IPF17661.1|IPF22162.1|IPF9727.2|Contig4-3000_0022|orf6.981|orf6.6328|CA0250|orf19.5122|CaO19.8928|CaO19.1348|IPF17661	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1685648	1688413	-	orf19.5121	1685648	1688413	1	1688413	1685648	1688413	1685648	OPT5	orf19.12587|orf19.8927|IPF17662.1|IPF22113.1|IPF9728.2|Contig4-3000_0021|orf6.982|CA3919|orf19.1347|CaO19.5121|OPT251|CaO19.12587|IFC5|orf6.6329	[NOT TRANSCRIBED?] Oligopeptide transporter; fungal-specific (no human or murine homolog); induced by BSA, but not by tetrapeptide or pentapeptide [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1690361	1692149	-	orf19.1435	1690361	1692149	1	1692149	1690361	1691935	1690559	TEF1	orf19.12585|orf19.9009|TEF-1|TEF3|YEF3|EFT3|IPF9732.2|IPF29461.1|IPF22137.1|IPF28153.1|HEF1|Contig4-2267_0001|orf6.1202|orf6.6331|CA0362|orf19.5119|TEF2-2|CaO19.1435|CaO19.9009	Translation elongation factor 1-alpha, detected at surface of yeast-form and hyphal cells; binds human plasminogen; macrophage/pseudohyphal-induced; upregulated in an RHE model of oral candidiasis and in clinical oral candidiasis isolates [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1692262	1694598	-	orf19.1434	1692262	1694598	1	1694598	1692262	1694489	1692342		orf19.9008|IPF9733.2|IPF17695.2|Contig4-2267_0004|orf6.1038|orf6.1203|CA0272|CaO19.1434|DPB11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1692326	1692611	+	ntar_439	1692326	1692611	1	1692326	1692611					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1694871	1696793	+	orf19.1433	1694871	1696793	1	1694871	1696793	1695466	1696659		orf19.9007|IPF25891.1|IPF19066.1|orf6.1039|CA0273|CaO19.9007|CaO19.1433|IPF19066	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1696732	1696851	-	orf19.1433.1	1696732	1696851	1	1696851	1696732					[NOT TRANSCRIBED?] ORF added to Assembly 21 based on comparative genome analysis; overlaps orf19.1433.2, which is annotated as a blocked reading frame [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1697454	1697662	-	ntar_440	1697454	1697662	1	1697662	1697454	1697604	1697479			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1699165	1700553	+	orf19.3639	1699165	1700553	1	1699165	1700553	1699324	1700388		orf19.11121|IPF23673.1|IPF14127.2|Contig4-2385_0005|orf6.2754|CA1314|CaO19.3639|MAG1|CaO19.11121	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1700457	1701479	-	orf19.3638	1700457	1701479	1	1701479	1700457	1701479	1700457	PGA46	orf19.11120|IPF18709.2|IPF14126.2|Contig4-2385_0004|orf6.2753|CA1313|CaO19.11120|CaO19.3638|IPF14126	Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1701552	1701869	+	orf19.3637	1701552	1701869	1	1701552	1701869	1701552	1701869		orf19.11119|IPF23692.1|IPF28717.1|orf6.2752|CaO19.11119|CaO19.3637	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1704786	1709600	+	orf19.3635	1704786	1709600	1	1704786	1709600	1704794	1709485		orf19.11117|IPF14241.2|IPF28710.1|Contig4-2417_0002|orf6.2750|CA1312|CaO19.11117|CaO19.3635|IPF14241	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1709624	1710307	-	orf19.3633	1709624	1710307	1	1710307	1709624	1710179	1709691		orf19.11115|IPF23682.1|IPF14233.1|Contig4-2417_0003|orf6.2748|CA1311|CaO19.11115|CaO19.3633|IPF14233	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1710483	1712384	-	orf19.3631	1710483	1712384	1	1712384	1710483	1712272	1710509		orf19.11114|IPF14232.2|IPF28707.1|Contig4-2417_0005|orf6.2708|orf6.2747|CA1310|CaO19.3631|IPF14232|IPF14232.1	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1712583	1714244	+	orf19.3630	1712583	1714244	1	1712583	1714244	1712650	1713936	RRP8	orf19.11113|IPF23665.1|IPF10837.2|orf6.2709|CA1277|CaO19.11113|CaO19.3630|IPF10837	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1714095	1714290	-	ntar_441	1714095	1714290	1	1714290	1714095					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1714464	1714875	-	ntar_442	1714464	1714875	1	1714875	1714464					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1715579	1718513	+	orf19.3629	1715579	1718513	1	1715579	1718513	1716138	1718312	DSE1	orf19.11112|IPF23656.1|IPF10835.2|Contig4-2517_0008|Contig4-2517_0009|orf6.2710|CA1278|CaO19.3629|CaO19.11112|IPF10835	Predicted cell wall protein; transcription is decreased in mutant lacking ACE2; periodic mRNA expression, peak at cell-cycle M/G1 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1718765	1719050	+	ntar_443	1718765	1719050	1	1718765	1719050					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1718916	1719287	-	ntar_444	1718916	1719287	1	1719287	1718916					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1719439	1722309	+	orf19.3628	1719439	1722309	1	1719439	1722309	1719503	1722001	RSP5	orf19.11111|IPF23654.1|IPF10833.2|Contig4-2517_0005|Contig4-2517_0007|orf6.2711|CA1279|CaO19.3628|CaO19.11111	Predicted ORF in Assemblies 19, 20 and 21; induced during infection of murine kidney, compared to growth in vitro; has murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1722615	1723577	+	orf19.3627	1722615	1723577	1	1722615	1723577	1722702	1723421		orf19.11110|IPF18958.2|IPF10828.2|Contig4-2517_0004|orf6.1478|orf6.2712|CA1280|CaO19.3627|IPF10828	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1723640	1723825	-	orf19.3626.1	1723640	1723825	1	1723825	1723640	1723801	1723640		IPF18957.1|CA0505|IPF11988.3f|IPF11988.3	ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1724312	1726526	-	orf19.3626	1724312	1726526	1	1726526	1724312	1726526	1724412		orf19.11109|IPF23662.1|IPF18957.1|IPF11988.2|IPF28722.1|Contig4-1622_0003|Contig4-3078_0001|orf6.1479|CA0506|IPF11988.5f|IPF11988	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1726577	1727832	-	orf19.3625	1726577	1727832	1	1727832	1726577	1727787	1726738		orf19.11108|IPF23675.1|IPF11989.2|Contig4-2568_0007|orf6.1480|CA0507|YNG1|CaO19.11108|CaO19.3625|IPF11989	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1728276	1731843	-	orf19.3624	1728276	1731843	1	1731843	1728276	1731843	1728403		orf19.11107|IPF11991.3|IPF28720.1|Contig4-2568_0003|orf6.1481|orf6.1516|CA0508|CaO19.3624|MSU1|IPF11991|IPF11991.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	1732041	1735889	+	orf19.3623	1732041	1735889	1	1732041	1735889	1732194	1735709	SMC2	orf19.11106|IPF23694.1|IPF11993.2|Contig4-2568_0001|orf6.1515|CA0529|CaO19.3623	Protein similar to S. cerevisiae Smc2p, which is a component of the condensin complex involved in mitotic chromosome condensation; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1736379	1738349	+	orf19.3622	1736379	1738349	1	1736379	1738349	1736880	1738166	ANP1	orf19.11105|IPF23669.1|IPF5178.2|Contig4-1830_0001|orf6.1514|CA0528|CaO19.3622|CaO19.11105	Putative mannosyltransferase of Golgi; member of Mnn9p family; similar to S. cerevisiae Anp1p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1739765	1741000	+	orf19.3621	1739765	1741000	1	1739765	1741000	1739765	1741000		orf19.11104|IPF23670.1|IPF5180.3|Contig4-1595_0002|orf6.1513|orf6.3291|CA0527|CaO19.3621|IPF5180|CA1679|IPF5180.3eoc|IPF18631.1	Possible pseudogene; similar to Ywp1p; ORF extended upstream from the initiating Met of orf19.3621 has a stop codon in the region corresponding to the Ywp1p signal peptide; disruption causes no apparent phenotype; no expression detected [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	1740775	1741328	-	ntar_445	1740775	1741328	1	1741328	1740775	1741328	1741170			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1741432	1742055	-	ntar_446	1741432	1742055	1	1742055	1741432					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1741580	1742054	+	ntar_447	1741580	1742054	1	1741580	1742054					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1743701	1743930	-	ntar_448	1743701	1743930	1	1743930	1743701					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1744348	1744713	-	ntar_449	1744348	1744713	1	1744713	1744348	1744511	1744368			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1744371	1745250	+	ntar_450	1744371	1745250	1	1744371	1745250	1744531	1744677			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1744912	1745273	-	ntar_451	1744912	1745273	1	1745273	1744912	1745161	1745030			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1745465	1745745	-	ntar_452	1745465	1745745	1	1745745	1745465					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1746941	1749161	+	orf19.3618	1746941	1749161	1	1746941	1749161	1747033	1748634	YWP1	orf19.11101|orf6.3288|FLO1|TEP1|IPF5185|CA1678|PGA24|IPF23664.1|IPF5185.2|Contig4-2227_0007|CaO19.3618|CaO19.11101	Cell wall and secreted protein with suggested role in dispersal in host; mutation causes increased adhesion and biofilm formation; has stable propeptide; regulated by growth phase, phosphate, Ssk1p, Ssn6p, Efg1p, Efh1p; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1749527	1749775	+	ntar_453	1749527	1749775	1	1749527	1749775	1749527	1749775			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1750041	1751479	+	orf19.3617	1750041	1751479	1	1750041	1751479	1750180	1751238		orf19.11100|IPF23676.1|IPF5189.2|Contig4-2008_0006|Contig4-2227_0011|orf6.3287|CA1677|CaO19.3617|GTR1|CaO19.11100	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis;; predicted ORF in Assemblies 19, 20 and 21 (see Locus History Note for Assembly 19 correction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1750851	1751489	-	ntar_454	1750851	1751489	1	1751489	1750851	1751291	1751157			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1751751	1753626	+	orf19.3616	1751751	1753626	1	1751751	1753626	1752011	1753357	ERG9	orf19.11099|IPF23667.1|IPF5191.2|Contig4-2008_0002|orf6.3286|CA1676|CaO19.3616|CaO19.11099	Putative farnesyl-diphosphate farnesyl transferase (squalene synthase) involved in the sterol biosynthesis pathway; likely to be essential for growth; regulated by fluconazole and lovastatin; amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1753844	1755533	+	orf19.3615	1753844	1755533	1	1753844	1755533	1753971	1755452		orf19.11098|IPF23666.1|IPF5192.2|Contig4-2505_0010|orf6.3285|CA1675|CaO19.3615|CaO19.11098|IPF5192	Predicted ORF in Assemblies 19, 20 and 21; induced in core caspofungin response; increased expression observed in an ssr1 homozygous null mutant; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1754393	1754603	-	ntar_455	1754393	1754603	1	1754603	1754393					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1754983	1755205	-	ntar_456	1754983	1755205	1	1755205	1754983					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1755603	1757216	-	orf19.3613	1755603	1757216	1	1757216	1755603	1757141	1755738		orf19.11096|IPF23668.1|IPF5194.2|Contig4-2505_0006|orf6.3283|CA1674|PAF1|CaO19.11096|CaO19.3613	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1757401	1758113	-	orf19.3612	1757401	1758113	1	1758113	1757401	1758090	1757485	PST2	orf19.11095|IPF23677.1|IPF5195.2|Contig4-2505_0004|orf6.3282|CA1673|CaO19.3612|CQR2|CaO19.11095|PST21	Putative NADH:quinone oxidoreductase; similar to 1,4-benzoquinone reductase; immunogenic in mice; benomyl treatment induces transcription; oxidative stress-induced via Cap1p; fungal-specific (no human/murine homolog), farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1757731	1757865	+	ntar_457	1757731	1757865	1	1757731	1757865					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1759062	1759989	+	orf19.3611	1759062	1759989	1	1759062	1759989	1759149	1759622		orf19.11094|IPF5196.2|IPF18754.2|Contig4-2505_0001|orf6.2467|orf6.3281|CA1672|CaO19.11094|CaO19.3611|IPF5196	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1759899	1762007	-	orf19.3610	1759899	1762007	1	1762007	1759899	1761870	1759930		orf19.11093|IPF5197|IPF23660.1|IPF5197.2|Contig4-2807_0005|orf6.2466|CA1129|CaO19.3610|CaO19.11093	Predicted ORF in Assemblies 19, 20 and 21; upregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1762112	1763775	-	orf19.3609	1762112	1763775	1	1763775	1762112	1763718	1762447	UTP15	orf19.11092|IPF23672.1|IPF5198.2|Contig4-2321_0007|orf6.2465|CA1128|CaO19.3609|CaO19.11092|IPF5198	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC); physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1764427	1767900	+	orf19.3608	1764427	1767900	1	1764427	1767900	1764507	1767620		orf19.11091|IPF23697.1|IPF5201.2|Contig4-2321_0006|orf6.2464|CA1127|CaO19.11091|MSH3|CaO19.3608	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1767593	1769203	-	orf19.3607	1767593	1769203	1	1769203	1767593	1769024	1767615		orf19.11090|IPF18812.2|IPF5203.2|Contig4-2321_0004|Contig4-2321_0005|orf6.2463|orf6.2220|CA1126|CaO19.3607|IPF5203|ECM18.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1768763	1769009	+	ntar_458	1768763	1769009	1	1768763	1769009					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1769587	1770600	-	orf19.3606	1769587	1770600	1	1770600	1769587	1770365	1769844		orf19.11089|IPF18811.1|IPF5204.2|orf6.2221|orf6.2462|CA0975|CaO19.3606|IPF18811	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1770908	1772047	+	orf19.3605	1770908	1772047	1	1770908	1772047	1771106	1771831		orf19.11088|IPF17165.2|IPF18755.1|Contig4-1774_0003|orf6.2222|orf6.2461|CA0976|CaO19.3605|PEX17	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1772207	1773612	+	orf19.3604	1772207	1773612	1	1772207	1773612	1772272	1773420		orf19.11087|IPF18810.1|IPF17166.2|orf6.2460|orf6.2223|CA0977|CaO19.3604|IPF18810	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1773269	1773748	-	ntar_459	1773269	1773748	1	1773748	1773269					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1774264	1777049	+	orf19.3603	1774264	1777049	1	1774264	1777049	1774591	1776867		orf19.11086|IPF23655.1|IPF16222.2|Contig4-1896_0001|Contig4-1896_0002|orf6.2224|CA0978|CaO19.11086|CaO19.3603|IPF16222	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1777052	1778915	+	orf19.3601	1777052	1778915	1	1777052	1778915	1777186	1778829		orf19.11084|IPF23663.1|IPF19713.1|orf6.2226|CA0979|CaO19.3601|CaO19.11084|IPF19713	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1778950	1779687	+	orf19.3600	1778950	1779687	1	1778950	1779687	1778986	1779687		orf19.11083|IPF23678.1|IPF17655.2|Contig4-2333_0004|orf6.2227|CA0980|CaO19.11083|CaO19.3600|IPF17655	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1779827	1783391	-	orf19.3599	1779827	1783391	1	1783391	1779827	1783309	1780055	TIF4631	orf19.11082|IPF19840.2|IPF17394.3|eIF4G|Contig4-2333_0003|orf6.315|orf6.705|orf6.2228|CA0048|TIF46|CaO19.3599|IPF17394.2	Putative translation initiation factor eIF4G; overexpression causes hyperfilamentation; hyphal- and macrophage-induced; genes encoding some translation factors are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1783654	1784324	-	orf19.3594	1783654	1784324	1	1784324	1783654	1784221	1783886		orf19.11076|orf6.701|CaO19.11076|CaO19.3594	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1783730	1784150	+	ntar_460	1783730	1784150	1	1783730	1784150	1784001	1784150			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1784369	1785771	+	orf19.3593	1784369	1785771	1	1784369	1785771	1784521	1785726	RPT6	orf19.11075|IPF13102.2|IPF18846.2|Contig4-2320_0007|Contig4-2333_0001|orf6.2051|orf6.700|CA0155|CaO19.3593	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Mig1p; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1785965	1788084	+	orf19.3592	1785965	1788084	1	1785965	1788084	1786043	1787953	JEM1	orf19.11074|IPF19182.2|IPF13100.1|Contig4-2320_0006|orf6.2050|CA0872|CaO19.3592|IPF13100	Functional homolog of S. cerevisiae Jem1p, which acts with Scj1p and Kar2p (BiP) in protein folding and ER-associated degradation of misfolded proteins, and also has a role in karyogamy; has J domain and 4 tetratricopeptide repeats [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1788074	1789909	-	orf19.3591	1788074	1789909	1	1789909	1788074	1789799	1788147	APE3	orf19.11073|IPF17873.2|IPF16625.2|Contig4-2320_0004|Contig4-2320_0005|orf6.2049|orf6.806|CA0871|CaO19.3591	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1790124	1791372	-	orf19.3590	1790124	1791372	1	1791372	1790124	1791316	1790450	IPP1	orf19.11072|IPF19605.1|IPF19604.1|Contig4-2320_0001|orf6.2048|orf6.807|CA0870|CaO19.3590	Protein described as inorganic pyrophosphatase; antigenic in human, mouse; soluble protein in hyphae; macrophage-induced protein; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1791595	1792524	-	orf19.3589	1791595	1792524	1	1792524	1791595	1792524	1791595	SPO11	orf19.11071|IPF19138.1|IPF14772.1|orf6.2047|orf6.808|CA0869|CaO19.3589|IPF14772	DNA endonuclease required for genetic recombination between homologous chromosomes during the parasexual cycle; produced in mitotically dividing cells; similar to S. cerevisiae Spo11p, which functions in recombination during meiosis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1793229	1794649	+	orf19.3586	1793229	1794649	1	1793229	1794649	1793412	1794308		IPF14774.2|IPF18847.1|Contig4-2332_0003|orf6.2044|orf6.2046|CA0867|CA0868|orf19.3588|IPF14773.3f|CA0190|IPF14773|orf6.809|IPF14773.2|IPF14773.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1794845	1795746	+	orf19.3585	1794845	1795746	1	1794845	1795746	1794949	1795341		orf19.11069|IPF23681.1|IPF14775.2|Contig4-2332_0005|orf6.2043|CA0866|CaO19.3585|CaO19.11069|IPF14775	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1795196	1796572	-	orf19.225	1795196	1796572	1	1796572	1795196	1796450	1795365		orf19.7855|orf19.11068|IPF27113.1|IPF13828.1|IPF23674.1|IPF14777.1|Contig4-2332_0007|orf6.275|orf6.2042|CA0865|orf19.3584|CaO19.225|CaO19.7855	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1797532	1800237	+	orf19.223	1797532	1800237	1	1797532	1800237	1797692	1800076		orf19.7854|IPF19261.2|IPF13825.2|Contig4-2835_0022|orf6.276|orf6.278|orf6.476|orf6.5150|CA3029|CaO19.223|IPF13825	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1800309	1801837	-	orf19.220	1800309	1801837	1	1801837	1800309	1801743	1800703	PIR1	orf19.7851|orf6.474|PIR2|IPF15363.2|IPF19968.1|orf6.5153|CA3030|CaO19.220|IPF19968	Structural protein of cell wall; 1,3-beta-glucan-linked; O-glycosylated by Pmt1p; N-mannosylated; tandem repeats; heterozygous mutant has cell wall defects; hyphal repressed; Hog1p, fluconazole, hypoxia induced; iron, Efg1p, Plc1p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1807304	1807645	+	orf19.218	1807304	1807645	1	1807304	1807645	1807304	1807645	BUD20	orf19.7850|IPF27125.1|IPF18392.1|orf6.5155|CaO19.7850|CaO19.218	Protein similar to S. cerevisiae Bud20p, which affects bud site selection; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1809207	1810346	+	orf19.217	1809207	1810346	1	1809207	1810346	1809207	1810346		orf19.7849|IPF27112.1|IPF12324.2|Contig4-2967_0001|orf6.5156|CA3031|CaO19.217|CaO19.7849|IPF12324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1812564	1813052	+	orf19.216.1	1812564	1813052	1	1812564	1813052	1812610	1812792			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1812933	1814680	-	orf19.216	1812933	1814680	1	1814680	1812933	1814489	1812963		orf19.7848|IPF12319|IPF13203.3|IPF12319.2|Contig4-2967_0004|orf6.5157|orf6.28|CA3032|CaO19.216	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-induced; upregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1815934	1818034	+	orf19.215	1815934	1818034	1	1815934	1818034	1816129	1817877		orf19.7847|IPF27103.1|IPF13202.1|Contig4-2967_0007|orf6.5158|CA3033|CaO19.215|AVO2|CaO19.7847|IPF13202	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1818209	1819203	+	orf19.213	1818209	1819203	1	1818209	1819203	1818268	1819101		orf19.7845|IPF27114.1|IPF13198.1|Contig4-2967_0009|orf6.5160|CA3034|CaO19.213|RPN12|CaO19.7845	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1819026	1820020	-	orf19.212	1819026	1820020	1	1820020	1819026	1819896	1819150	VPS28	orf19.7844|IPF27116.1|IPF13197.2|Contig4-2967_0010|orf6.5161|CA3035|CaO19.7844|CaO19.212	Protein involved in proteolytic activation of Rim101p, which regulates pH response; role in echinocandin, azole sensitivity; similar to S. cerevisiae Vps28p, which is a subunit of the ESCRT I protein sorting complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1820132	1821101	+	orf19.211	1820132	1821101	1	1820132	1821101	1820192	1820734		orf19.7843|IPF27119.1|IPF13443.2|Contig4-2967_0012|orf6.5162|CA3036|CaO19.211|CaO19.7843|IPF13443	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1820493	1822078	-	orf19.210	1820493	1822078	1	1822078	1820493	1822064	1820685		orf19.7842|IPF27111.1|IPF13442.1|Contig4-2967_0015|orf6.5163|CA3037|CaO19.210|CaO19.7842|IPF13442	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1822223	1823193	-	orf19.209	1822223	1823193	1	1823193	1822223	1823162	1822314	DFG10	orf19.7841|IPF27115.1|IPF13438.2|Contig4-2967_0018|orf6.5164|CA3038|CaO19.7841|CaO19.209|IPF13438	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1823259	1824221	+	ntar_461	1823259	1824221	1	1823259	1824221					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1823595	1828341	-	orf19.207	1823595	1828341	1	1828341	1823595	1828161	1823947	PGA55	orf19.7838|IPF15911.3|IPF13437.3|Contig4-2967_0022|orf6.5166|orf6.5940|CA3039|CaO19.207	Putative GPI-anchored protein of unknown function; filament induced; regulated by Nrg1p, Tup1p; possibly transcriptionally regulated upon hyphal formation; mRNA binds to She3p and is localized to buds of yeast-form cells and hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1828960	1829530	-	ntar_462	1828960	1829530	1	1829530	1828960	1829192	1829067			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1829788	1830106	+	ntar_463	1829788	1830106	1	1829788	1830106	1829892	1830041			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1830613	1834191	-	orf19.206	1830613	1834191	1	1834191	1830613	1833836	1830690		orf19.7836|IPF12022.2|IPF8939.3|Contig4-2951_0014|orf6.129|orf6.5938|CA3622|CaO19.206|IPF12022	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1834301	1834564	-	ntar_464	1834301	1834564	1	1834564	1834301					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1837092	1837406	-	ntar_465	1837092	1837406	1	1837406	1837092	1837406	1837197			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1837111	1837865	+	ntar_466	1837111	1837865	1	1837111	1837865					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1839297	1840232	-	orf19.204	1839297	1840232	1	1840232	1839297	1840232	1839618		orf19.7834|IPF27117.1|IPF8942.1|Contig4-2951_0005|orf6.5936|CA3621|CaO19.204|CaO19.7834|IPF8942	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1842921	1844638	+	orf19.203	1842921	1844638	1	1842921	1844638	1842962	1844473	STB3	orf19.7833|IPF27108.1|IPF9063.2|Contig4-2485_0005|Contig4-2485_0007|orf6.5935|CA3620|CaO19.7833|CaO19.203|IPF9063	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1844989	1847480	+	orf19.202	1844989	1847480	1	1844989	1847480	1845016	1847361	CDC47	orf19.7832|IPF9065.2|orf6.5934|CA3619|CaO19.202|CaO19.7832|CDC47.5|MCM7	Phosphorylated protein described as having role in control of cell division; RNA abundance regulated by tyrosol and cell density; merged with orf19.201 in Assembly 20; unmerged from orf19.201 in a revision of Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1847621	1848483	+	orf19.201	1847621	1848483	2	1847621|1847957	1847882|1848483	1847727	1848304		orf19.7831|IPF27100.1|IPF27124.1|IPF9065.2|IPF20139.1|Contig4-1852_0004|Contig4-2485_0003|Contig4-2485_0004|orf6.5933|orf6.5934	Predicted ORF in Assemblies 19, 20 and 21; unmerged from orf19.202 in a revision of Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1847988	1848313	-	ntar_467	1847988	1848313	1	1848313	1847988	1848149	1847988			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1848635	1849436	+	orf19.200	1848635	1849436	1	1848635	1849436	1848684	1849265		orf19.7830|IPF27118.1|IPF20138.1|Contig4-1852_0002|Contig4-2485_0001|orf6.5932|CA3618|CaO19.200|THO1|CaO19.7830	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1849292	1851136	-	orf19.199	1849292	1851136	1	1851136	1849292	1850993	1849458		orf19.7829|IPF27109.1|IPF9069.2|Contig4-1852_0003|Contig4-1950_0007|orf6.5931|CA3617|CaO19.7829|CaO19.199|IPF9069	Predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1851212	1851533	+	ntar_468	1851212	1851533	1	1851212	1851533					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1851656	1853853	-	orf19.198	1851656	1853853	1	1853853	1851656	1853558	1851837	ASN1	orf19.7828|IPF27104.1|IPF9072.3|Contig4-1950_0002|Contig4-1950_0005|orf6.209|orf6.5930|CaO19.198|CA3616|IPF19994.1	Protein described as asparagine synthetase; soluble protein in hyphae; regulated by Rim101p; decreased expression at pH 4 compared to pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1854235	1856933	-	orf19.4066	1854235	1856933	1	1856933	1854235	1856793	1854382		orf19.7826|orf19.11549|IPF23131.1|IPF9466.2|Contig4-2273_0002|orf6.207|orf6.2484|CA1139|orf19.196|CaO19.11549|CaO19.4066|IPF9466	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1858879	1859507	-	orf19.4067	1858879	1859507	2	1859507|1859241	1859358|1858879	1859507	1858879			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1860072	1862569	-	orf19.4068	1860072	1862569	1	1862569	1860072	1862437	1860281		orf19.11551|IPF17322.2|IPF9462.2|orf6.2486|orf6.604|CA1140|CaO19.4068|IPF17322.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1862599	1863307	-	orf19.4069	1862599	1863307	1	1863307	1862599	1863150	1862599		IPF9461.1|Contig4-2087_0005|orf6.2487|CA1141|CaO19.4069|IPF17322.5f	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1863814	1864647	-	orf19.4070	1863814	1864647	1	1864647	1863814	1864647	1863814		IPF9459.1|Contig4-2087_0002|orf6.2488|CA1142|CaO19.4070|IPF9459	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1864801	1865344	+	ntar_469	1864801	1865344	1	1864801	1865344					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1865590	1869294	-	orf19.4072	1865590	1869294	1	1869294	1865590	1869204	1865944	IFF6	orf19.11553|HYR1-12|IPF19647.2|IPF28532.1|orf6.2490|orf6.3209|CA1621|HYR10|CaO19.4072|IPF19647.1	Putative GPI-anchored protein of unknown function; opaque-specific transcription; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1870585	1870746	+	ntar_470	1870585	1870746	1	1870585	1870746					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1872527	1876048	-	orf19.4076	1872527	1876048	1	1876048	1872527	1875991	1872707	MET10	orf19.11557|IPF23180.1|IPF13194.2|Contig4-2114_0002|Contig4-2114_0003|Contig4-2114_0004|orf6.3204|CA1620|CaO19.4076|CaO19.11557	Predicted enzyme of sulfur amino acid metabolism; biofilm-induced expression; upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; Hog1p-induced; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1872767	1873502	+	ntar_471	1872767	1873502	1	1872767	1873502	1872964	1873119			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1880211	1882267	+	orf19.4077	1880211	1882267	1	1880211	1882267	1880524	1882158	MIT1	orf19.11558|SUR1|IPF2067.2|IPF28522.1|Contig4-2072_0001|Contig4-2072_0002|orf6.3203|CA1619|CaO19.11558|CaO19.4077|IPF2067	Protein involved in sphingolipid biosynthesis; required for mannosylation of inositol phosphoceramide (IPC) to form mannosylated sphingolipids MIPC and M(IP)2C; fluconazole, caspofungin induced; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1882378	1883566	+	orf19.4078	1882378	1883566	1	1882378	1883566	1882509	1883522		orf19.11559|IPF2068.3|IPF28525.1|Contig4-2072_0004|orf6.3202|CA1618|RRP45|CaO19.4078|IPF2068.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1883732	1884780	+	orf19.4079	1883732	1884780	1	1883732	1884780	1883770	1884561	SLP2	orf19.11560|IPF23156.1|IPF2071.3|orf6.48|orf6.6857|CA4337|CaO19.4079|IPF2071|IPF2071.2	Predicted ORF in Assemblies 19, 20 and 21; similar to stomatin mechanoreception protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1884965	1886262	+	orf19.4080	1884965	1886262	1	1884965	1886262	1884991	1886055		orf19.11561|IPF2072.2|IPF28524.1|Contig4-3095_0004|orf6.49|orf6.6856|CA0006|CaO19.4080|IPF2072	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1886095	1886886	-	ntar_1415	1886095	1886886	3	1886886|1886620|1886489	1886720|1886595|1886095					 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1887648	1887862	+	ntar_472	1887648	1887862	1	1887648	1887862					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1888132	1888223	+	tp(ugg)2	1888132	1888223	2	1888132|1888188	1888167|1888223				tP(UGG)2.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1889255	1889755	+	orf19.4081	1889255	1889755	1	1889255	1889755	1889255	1889755		orf19.11562|IPF23165.1|IPF2074.1|Contig4-3095_0009|orf6.6855|CaO19.4081|CaO19.11562	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1889941	1890859	+	orf19.4082	1889941	1890859	1	1889941	1890859	1889969	1890607	DDR48	orf19.11563|orf6.6854|DDR99|IPF23163.1|IPF2075.1|Contig4-3095_0012|CA4336|CaO19.11563|CaO19.4082	Immunogenic stress-associated protein; regulated by filamentous growth pathways; induced by benomyl, caspofungin, or in azole-resistant strain; Hog1p, farnesol, alkaline downregulated; similar to S. cerevisiae Ddr48p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1890822	1892346	-	orf19.4084	1890822	1892346	1	1892346	1890822	1892346	1891108	KIS1	orf19.11565|IPF2078.2|IPF2079.2|Contig4-3095_0014|orf6.6852|CA4335|CaO19.4084|CaO19.11565|GAL83	Scaffold protein of Snf1p complex; similar to S. cerevisiae Gal83p and Sip2p, with regions of similarity to Sip1p (ASC and KIS domain); interacts with Snf4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1892623	1893264	-	orf19.4085	1892623	1893264	1	1893264	1892623	1893264	1892623		orf19.11566|IPF23162.1|IPF2082.1|Contig4-3095_0017|orf6.6851|CA4334|CaO19.11566|CaO19.4085|IPF2082	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1893345	1894291	+	orf19.4086	1893345	1894291	1	1893345	1894291	1893508	1894158		orf19.11567|IPF23158.1|IPF2083.1|Contig4-3095_0019|orf6.6850|CA4333|CaO19.4086|CaO19.11567|IPF2083	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1893978	1895067	-	orf19.4088	1893978	1895067	1	1895067	1893978	1895034	1894228		orf19.11569|IPF23157.1|IPF2085.2|Contig4-3095_0020|orf6.6848|CA4332|GLO2|CaO19.11569|CaO19.4088	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1895199	1896611	-	orf19.4089	1895199	1896611	1	1896611	1895199	1896546	1895305	SGT1	orf19.11570|IPF23147.1|IPF2086.2|Contig4-3095_0023|orf6.6847|CA4331|CaO19.4089|CaO19.11570|IPF2086	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to radicicol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1896701	1898443	-	orf19.4090	1896701	1898443	1	1898443	1896701	1898304	1896799		orf19.11571|IPF23141.1|IPF2087.2|Contig4-3095_0024|orf6.6846|CA4330|CaO19.11571|CaO19.4090|IPF2087	Predicted membrane transporter, member of the fucose:proton symporter (FHS) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1896732	1898410	+	ntar_473	1896732	1898410	1	1896732	1898410	1898006	1898143			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1898796	1899280	+	orf19.4090.1	1898796	1899280	2	1898796|1899011	1898937|1899280	1898915	1899227		IPF23132.1|IPF2089.1|orf6.3612|CA4329|VMA21	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1899317	1900526	+	orf19.4091	1899317	1900526	1	1899317	1900526	1899344	1900399		orf19.11572|IPF23149.1|IPF2090.2|Contig4-3095_0028|orf6.6845|CA4328|CaO19.4091|CaO19.11572|IPF2090	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1900133	1900984	-	orf19.4092	1900133	1900984	1	1900984	1900133	1900948	1900451		orf19.11573|IPF23172.1|IPF2091.2|Contig4-3095_0029|orf6.6844|CA4327|CaO19.4092|CaO19.11573|IPF2091	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1901099	1902980	-	orf19.4093	1901099	1902980	1	1902980	1901099	1902937	1901174	NOP7	orf19.11574|IPF23138.1|IPF2093.2|Contig4-3095_0030|orf6.6843|CA4326|PES1|CaO19.11574|CaO19.4093|IPF2093	Pescadillo homolog required for filament-to-yeast switching; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1903216	1903707	-	orf19.4094	1903216	1903707	1	1903707	1903216	1903707	1903216		orf19.11575|IPF23168.1|IPF2094.2|Contig4-3095_0032|orf6.6842|CA4325|CaO19.4094|CaO19.11575|IPF2094	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1903875	1904327	+	orf19.4095	1903875	1904327	1	1903875	1904327	1903875	1904327		orf19.11576|IPF23171.1|IPF2095.2|Contig4-3095_0033|orf6.6841|CA4324|CaO19.11576|CaO19.4095|IPF2095	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1904485	1906078	+	orf19.4096	1904485	1906078	1	1904485	1906078	1904546	1905778		orf19.11577|IPF23146.1|IPF2096.2|Contig4-3095_0037|orf6.6840|CA4323|CaO19.11577|CaO19.4096|IPF2096	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1905912	1906111	-	ntar_474	1905912	1906111	1	1906111	1905912					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1906182	1908876	+	orf19.4097	1906182	1908876	1	1906182	1908876	1906243	1908816		orf19.11578|IPF23130.1|IPF2097.2|Contig4-3095_0039|Contig4-3095_0040|orf6.6839|CA4322|CaO19.4097|CaO19.11578|IPF2097	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1908791	1910979	-	orf19.564	1908791	1910979	1	1910979	1908791	1910923	1908860	KAR3	orf19.11581|IPF23152.1|IPF2100.1|Contig4-3095_0041|orf6.368|orf6.6836|CA4321|orf19.4100|CA0058|IPF3770|IPF3770.2	Kinesin-like microtubule motor protein; required for nuclear fusion during mating; C-terminal motor domain; not essential for viability; homozygous null has high-frequency white-opaque switching phenotype [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1911169	1912170	+	orf19.563	1911169	1912170	1	1911169	1912170	1911231	1911998	RRP15	Contig4-3095_0042|orf6.367|CaO19.563|CA0057|IPF3767|IPF3767.1	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1912252	1913353	+	orf19.1597	1912252	1913353	1	1912252	1913353	1912340	1913206	ABG1	orf19.9165|IPF25726.1|IPF3765.3|Contig4-3095_0044|orf6.1085|CA0299|CaO19.1597|CaO19.9165|IPF3765.3eoc|IPF3765|IPF3765.2	Vacuolar membrane protein; depletion causes abnormal vacuolar morphology, cell separation defect, sensitivity to cell wall perturbation, and increased hyphal branching; essential gene with no mammalian homolog; Cyr1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1913126	1914828	-	orf19.1598	1913126	1914828	1	1914828	1913126	1914692	1913346	ERG24	orf19.9166|IPF25723.1|IPF3764.2|Contig4-3095_0045|orf6.1086|orf6.1911|CA0300|CaO19.9166|CaO19.1598	C-14 sterol reductase, has a role in ergosterol biosynthesis; mutation confers increased sensitivity to dyclonine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1915010	1915427	-	ntar_475	1915010	1915427	1	1915427	1915010					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1917230	1917427	+	ntar_476	1917230	1917427	1	1917230	1917427	1917249	1917395			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1918072	1918428	+	orf19.1599	1918072	1918428	1	1918072	1918428	1918072	1918428		orf19.9167|IPF3759.2|IPF29393.1|Contig4-3095_0048|orf6.1648|CaO19.1599	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1918754	1921595	+	orf19.1600	1918754	1921595	1	1918754	1921595	1919281	1921410		orf19.9168|IPF25722.1|IPF19700.1|Contig4-3095_0049|Contig4-3095_0051|orf6.1649|CA0614|CaO19.9168|CaO19.1600|IPF19700	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1921227	1921397	-	ntar_477	1921227	1921397	1	1921397	1921227					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1921910	1923165	+	orf19.1601	1921910	1923165	1	1921910	1923165	1921934	1923103	RPL3	orf19.9169|IPF25724.1|IPF6742.1|Contig4-3095_0054|orf6.1650|CA0615|CaO19.1601|CaO19.9169	Putative ribosomal protein; similar to S. cerevisiae Rpl3p; gene induced by ciclopirox olamine treatment; genes encoding cytoplasmic ribosomal subunits are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1923985	1924184	+	ntar_478	1923985	1924184	1	1923985	1924184					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1924256	1924773	+	ntar_479	1924256	1924773	1	1924256	1924773	1924256	1924531			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1925091	1925456	+	ntar_480	1925091	1925456	1	1925091	1925456					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1930174	1933641	-	orf19.1604	1930174	1933641	2	1933641|1933233	1933469|1930174	1933514	1930310		orf19.9172|IPF25717.1|IPF6730.2|Contig4-3095_0062|Contig4-3095_0063|orf6.2453|CA1121|CaO19.1604|CaO19.9172|IPF6730	Predicted ORF in Assemblies 19, 20 and 21; Gal4p-like DNA-binding domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1935817	1936510	+	ntar_481	1935817	1936510	1	1935817	1936510					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1936424	1939413	-	orf19.1605	1936424	1939413	1	1939413	1936424	1939349	1936617	PMS1	orf19.9173|IPF25719.1|IPF6724.1|Contig4-3095_0066|orf6.2454|CA1122|CaO19.1605|CaO19.9173|PMS1.3eoc|PMS1.3	Protein described as DNA mismatch repair factor; ortholog of S. cerevisiae PMS1 which is an ATP-binding protein involved in DNA mismatch repair [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1939600	1940639	+	orf19.1406	1939600	1940639	1	1939600	1940639	1939666	1940436		orf19.8984|IPF25961.1|IPF19974.1|Contig4-2113_0005|Contig4-2113_0006|orf6.5359|CA3178|CaO19.8984|REV7|CaO19.1406|IPF19974	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1939881	1940646	-	ntar_482	1939881	1940646	1	1940646	1939881	1940603	1940433			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1940825	1941993	+	orf19.1405	1940825	1941993	1	1940825	1941993	1940951	1941916	PHO13	orf19.8983|IPF25952.1|IPF11589.2|Contig4-2113_0004|orf6.5358|CA3177|CaO19.8983|PHO132|CaO19.1405|IPF11589	Transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1942078	1943561	+	orf19.1404	1942078	1943561	1	1942078	1943561	1942108	1943511		orf19.8982|IPF25946.1|IPF11588.2|Contig4-2113_0003|orf6.5357|CA3176|CaO19.1404|DUS1|CaO19.8982|IPF11588	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1943491	1945486	-	orf19.1403	1943491	1945486	1	1945486	1943491	1945393	1943675		orf19.8981|IPF25937.1|IPF11587.2|Contig4-2113_0002|orf6.5356|CA3175|CaO19.8981|CaO19.1403|IPF11587	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1946035	1947902	-	orf19.1402	1946035	1947902	1	1947902	1946035	1947860	1946280	CCT2	orf19.8980|IPF25943.1|IPF11584.2|Contig4-2651_0001|orf6.5355|CA3174|CaO19.1402|CaO19.8980	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1951311	1953653	+	orf19.1401	1951311	1953653	1	1951311	1953653	1951311	1953272	EAP1	orf6.5354|PGA47|IPF7676.3|IPF14145.2|Contig4-2651_0004|CA3173|CaO19.1401|IPF14145	Cell wall adhesin required for cell-cell adhesion and biofilm formation; GPI anchored; Efg1p-regulated; suppresses polystyrene or cell adhesion, filamentation, invasive growth defects of S. cerevisiae flo8 or flo11 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	1953556	1954352	-	ntar_1429	1953556	1954352	2	1954352|1953840	1954291|1953556					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1954610	1957225	-	orf19.1400	1954610	1957225	1	1957225	1954610	1957138	1954895		orf19.8978|IPF25931.1|IPF7679.2|Contig4-2842_0014|orf6.5353|CA3172|CaO19.1400|CSN2|CaO19.8978|IPF7676	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1957428	1959772	-	orf19.1397	1957428	1959772	1	1959772	1957428	1958644	1957934		orf19.8975|IPF25962.1|IPF7681.2|Contig4-2842_0012|orf6.5350|CA3171|CaO19.1397|CaO19.8975|IPF7681	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1959636	1960319	+	ntar_483	1959636	1960319	1	1959636	1960319					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1960444	1962153	+	orf19.1396	1960444	1962153	1	1960444	1962153	1960784	1961947		orf19.8974|IPF25950.1|IPF7685.2|Contig4-2842_0005|orf6.5349|CA3170|AGE2|CaO19.8974|CaO19.1396|IPF7685	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1962006	1963383	-	orf19.1395	1962006	1963383	1	1963383	1962006	1963177	1962161		orf19.8973|IPF11059.2|IPF7686.2|Contig4-2842_0004|orf6.5348|CA3169|CaO19.8973|CaO19.1395|IPF7686|CA0993|IPF11059|IPF11059.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1965639	1966674	-	orf19.1394	1965639	1966674	1	1966674	1965639	1966535	1966035		orf19.8972|IPF11063.2|IPF29472.1|orf6.2246|orf6.5347|YCR090|CA0992|CaO19.1394|IPF11063	Protein not essential for viability; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1967279	1968806	+	orf19.1393	1967279	1968806	1	1967279	1968806	1967614	1968714		orf19.8971|IPF11065.2|IPF18374.2|Contig4-2636_0009|orf6.2245|orf6.5346|CA0991|CaO19.1393|IPF11065	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1968728	1968966	-	ntar_484	1968728	1968966	1	1968966	1968728					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1968909	1971388	+	orf19.1392	1968909	1971388	1	1968909	1971388	1969059	1971272		orf19.8970|IPF25932.1|IPF11068.1|Contig4-2636_0008|orf6.2244|CA0990|CaO19.8970|EPS1|CaO19.1392|IPF11068	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1970690	1971979	-	orf19.1391	1970690	1971979	1	1971979	1970690	1971768	1971259		orf19.8969|IPF25966.1|IPF11069.2|Contig4-2636_0007|orf6.2243|CA0989|CaO19.8969|CaO19.1391|IPF11069	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1972438	1974093	+	orf19.1390	1972438	1974093	1	1972438	1974093	1972502	1973827	PMI1	orf19.8968|PMI40|IPF19894.1|IPF11071.3|Contig4-2636_0003|Contig4-2636_0004|MPI|orf6.2074|orf6.2242|CA0988|CaO19.1390	Phosphomannose isomerase; cell wall biosynthesis enzyme; drug target; functional homolog of S. cerevisiae and E. coli phosphomannose isomerase; Gcn4p-regulated; repressed by 3-AT; induced on adherence to polystyrene, phagocytosis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1974401	1975416	+	orf19.1389	1974401	1975416	1	1974401	1975416	1974713	1975204		orf19.8967|IPF18804.2|IPF12381.2|Contig4-2576_0010|orf6.2075|orf6.2241|CA0885|CaO19.1389|SGN11|IPF12381	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1977023	1977334	+	ntar_485	1977023	1977334	1	1977023	1977334	1977081	1977230			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1977684	1978562	+	orf19.1388	1977684	1978562	1	1977684	1978562	1977755	1978411		orf19.8966|IPF25964.1|IPF12382.2|Contig4-2576_0005|orf6.2076|CA0886|CaO19.8966|CaO19.1388|IPF12382	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1978247	1979422	-	orf19.1387	1978247	1979422	1	1979422	1978247	1979358	1978474		orf19.8965|IPF25954.1|IPF12383.2|Contig4-2576_0004|orf6.2077|CA0887|CaO19.1387|CaO19.8965|IPF12383	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1979563	1980381	+	orf19.1386	1979563	1980381	1	1979563	1980381	1979774	1980226		orf19.8964|IPF25970.1|IPF12385.1|Contig4-2576_0003|orf6.2078|CA0888|CaO19.1386|BET1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1980156	1982441	-	orf19.1383	1980156	1982441	1	1982441	1980156	1982337	1980394		orf19.8963|IPF12388.1|IPF14542.1|IPF12387.1|Contig4-1457_0003|Contig4-1457_0005|Contig4-2576_0002|orf6.2081|orf6.2080|orf6.4169|CA6254|CA2316|orf19.1384|CaO19.1383|IPF14542.5f	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1982580	1983818	+	orf19.1382	1982580	1983818	1	1982580	1983818	1982716	1983696	YEA4	orf19.8962|IPF14544.2|IPF12389.2|Contig4-2576_0001|orf6.2082|orf6.4168|CA2315|CaO19.1382	Protein similar to S. cerevisiae Yea4p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1983612	1985259	-	orf19.1381	1983612	1985259	1	1985259	1983612	1985123	1983729		orf19.8961|IPF25947.1|IPF14545.2|orf6.4167|CA2314|LSB5|CaO19.1381|CaO19.8961|IPF14545	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1985608	1987995	+	orf19.1378	1985608	1987995	1	1985608	1987995	1985719	1987884	SUP35	orf19.8958|IPF25930.1|IPF19754.1|Contig4-2434_0007|orf6.4164|CA2313|CaO19.8958|CaO19.1378|ERF3	Translation factor eRF3; shows prion-like aggregation in some, not all, studies; partially complements S. cerevisiae sup35 mutant translation defect; species barrier with S. cerevisiae Sup35p prion; gene not regulated by yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1987862	1989080	-	orf19.1377	1987862	1989080	1	1989080	1987862	1989007	1987955	IPK2	orf19.8957|IPF25956.1|IPF16498.2|Contig4-2434_0006|orf6.4163|CA2312|CaO19.8957|ARG82|CaO19.1377|IPF16498	Predicted ORF in Assemblies 19, 20 and 21; moderately induced at 42 deg [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1989661	1991229	+	orf19.1376	1989661	1991229	1	1989661	1991229	1989931	1990818		orf19.8956|IPF25959.1|IPF16993.2|Contig4-2434_0002|Contig4-2434_0003|orf6.4162|CA2311|SSO2|CaO19.8956|CaO19.1376	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1992133	1994191	+	orf19.1375	1992133	1994191	1	1992133	1994191	1992236	1993957	LEU42	orf19.8955|IPF25939.1|IPF9877.2|Contig4-2586_0001|orf6.4161|LEU6|CA2310|CaO19.1375|CaO19.8955	Putative alpha-isopropylmalate synthase; fungal-specific (no human/murine homolog); upregulated in the presence of human blood or polymorphonuclear cells; regulated by Gcn2p and Gcn4p; detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1994376	1995450	+	orf19.1374	1994376	1995450	1	1994376	1995450	1994421	1994993		orf19.8954|IPF25965.1|IPF9875.2|Contig4-2586_0002|orf6.4160|CA2309|CaO19.8954|CaO19.1374|IPF9875	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1994899	1998001	-	orf19.1373	1994899	1998001	1	1998001	1994899	1997964	1995004	INP51	orf19.8953|IPF9874.2|IPF9872.3|Contig4-2586_0004|Contig4-2586_0005|orf6.1145|orf6.4159|CA2308|CaO19.1373|IPF9874.3	Putative phosphatidylinositol-4,5-bisphosphate phosphatase; involved in maintenance of phosphoinositide levels; affects hyphal growth, virulence, cell integrity; interacts with Irs4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1998083	1999021	-	orf19.1372	1998083	1999021	1	1999021	1998083	1998958	1998239		orf19.8952|orf6.1146|IPF9870.2|Contig4-2586_0007|orf6.4158|orf6.530|CA6249|CaO19.1372|IPF9870	Gene transcription regulated by Mig1p and Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1999481	2001124	+	orf19.1371	1999481	2001124	1	1999481	2001124	1999532	2000998		orf19.8951|IPF25945.1|IPF9869.2|orf6.1147|orf6.4157|CA0336|CaO19.1371|IPF9869	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	2001099	2002216	-	orf19.1370	2001099	2002216	1	2002216	2001099	2002164	2001301		orf19.8950|IPF18486.2|IPF9867.2|Contig4-1943_0002|orf6.1148|orf6.4156|CA0337|CaO19.1370|IPF9867	Predicted ORF in Assemblies 19, 20 and 21; expression is regulated upon white-opaque switching; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2003124	2004647	-	orf19.1369	2003124	2004647	1	2004647	2003124	2004475	2003171		orf19.8949|IPF8976.2|IPF19035.2|Contig4-2176_0002|orf6.1149|orf6.5301|CA3137|PYD3|CaO19.1369|IPF8976	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2009292	2011234	+	orf19.1368	2009292	2011234	1	2009292	2011234	2009389	2011215		orf19.8948|IPF25936.1|IPF8985.3|Contig4-2532_0008|orf6.291|orf6.5300|CA0045|CaO19.1368|IPF8985|IPF8985.5eoc|IPF8985.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2012594	2013050	-	orf19.1367.1	2012594	2013050	1	2013050	2012594	2012969	2012727			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2013155	2014465	+	orf19.1367	2013155	2014465	1	2013155	2014465	2013271	2014215	MTW1	orf19.8947|IPF25955.1|IPF8989.1|Contig4-2532_0004|orf6.5299|CA3136|CaO19.1367|CaO19.8947|IPF8989	Kinetochore component; amount of Nuf2p and Mtw1p protein detected at each centromere is consistent with a single kinetochore microtubule attachment site [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2014327	2015586	-	orf19.1366	2014327	2015586	1	2015586	2014327	2015586	2014327		orf19.8946|IPF25949.1|IPF8990.1|Contig4-2532_0003|orf6.5298|CA3135|CaO19.1366|CaO19.8946|IPF8990	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2015944	2017517	-	orf19.1365	2015944	2017517	1	2017517	2015944	2017517	2015997		orf19.8945|IPF25944.1|IPF19972.1|Contig4-1729_0002|Contig4-2532_0001|orf6.5297|CA3134|CaO19.1365|SOX1|CaO19.8945|IFZ2|IPF11499.repeat2	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	2018693	2020004	+	orf19.1364	2018693	2020004	1	2018693	2020004	2018811	2019848		orf19.8944|IPF25957.1|IPF16939.2|Contig4-1729_0001|orf6.5296|CA3133|YBR147w|CaO19.1364|CaO19.8944|IPF16939	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2020423	2021601	-	orf19.1363	2020423	2021601	1	2021601	2020423	2021601	2020423		orf19.8943|IPF25951.1|IPF8904.2|Contig4-2717_0017|orf6.5295|CA3132|CaO19.8943|CaO19.1363|IPF8904	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	2024168	2025610	+	orf19.1362	2024168	2025610	1	2024168	2025610	2024187	2025488	SMM1	orf19.8942|IPF25948.1|IPF8910.2|Contig4-2717_0007|orf6.5294|CA3131|CaO19.8942|CaO19.1362|IPF8910	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2025564	2026529	-	orf19.1361	2025564	2026529	1	2026529	2025564	2026312	2025656		orf19.8941|IPF25963.1|IPF8911.2|Contig4-2717_0005|orf6.5293|CA3130|CaO19.8941|TIM23|CaO19.1361	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2026717	2027200	-	orf19.1360.1	2026717	2027200	1	2027200	2026717	2027115	2026933		IPF25933.1|IPF8912.1|Contig4-2717_0004|CA3129|OST4	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2027337	2028093	+	orf19.1360	2027337	2028093	1	2027337	2028093	2027376	2027864		orf19.8940|IPF25969.1|IPF8914.1|Contig4-2717_0003|orf6.5292|CA3128|CaO19.8940|CaO19.1360|IPF8914	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2028114	2029916	+	orf19.1359	2028114	2029916	1	2028114	2029916	2028114	2029865		orf19.8939|IPF25938.1|IPF8915.1|Contig4-2717_0001|orf6.5291|CA3127|CaO19.1359|CaO19.8939|IPF8915	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2030140	2030390	+	ntar_486	2030140	2030390	1	2030140	2030390					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2030706	2032361	+	orf19.1358	2030706	2032361	1	2030706	2032361	2031301	2032272	GCN4	orf19.8938|IPF25958.1|IPF8919.2|Contig4-1860_0002|orf6.5290|CA3126|CaO19.1358|CaO19.8938	Transcriptional activator of general amino acid control response; required for Efg1p-dependent pseudohyphal filament induction by amino acid starvation but not by serum; upregulated in the presence of human whole blood or PMN cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2032551	2033122	-	ntar_487	2032551	2033122	1	2033122	2032551					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2032797	2033009	+	ntar_488	2032797	2033009	1	2032797	2033009					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2033465	2033872	+	ntar_489	2033465	2033872	1	2033465	2033872					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2034441	2036490	+	orf19.1357	2034441	2036490	1	2034441	2036490	2034842	2036386	FCY21	orf19.8937|FCY22|IPF17673.3|IPF8921.2|IPF17777.2|IPF17779.2|Contig4-1860_0007|Contig4-1860_0009|orf6.1000|orf6.332|CA6188|FCY2|FCY21.3f	High affinity, high capacity, hypoxanthine-adenine-guanine-cytosine/ H+ symporter; purine-cytosine permease of pyrimidine salvage; similar to S. cerevisiae Fcy2p; mutation confers resistance to 5-fluorocytosine (5-FC) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2036789	2037957	+	orf19.1356	2036789	2037957	1	2036789	2037957	2036830	2037837		orf19.8936|IPF17674.1|IPF17112.2|Contig4-1977_0002|Contig4-1977_0003|orf6.1001|orf6.331|CA0258|CaO19.1356|MST2|IPF17112	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2037892	2039631	-	orf19.1355	2037892	2039631	1	2039631	2037892	2039304	2038261		orf19.8935|IPF25953.1|IPF17111.1|Contig4-1977_0005|orf6.1002|CA0259|CaO19.8935|SOL2|CaO19.1355|SOL1	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2039909	2040085	+	ntar_490	2039909	2040085	1	2039909	2040085					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2040057	2040549	-	ntar_491	2040057	2040549	1	2040549	2040057	2040309	2040094			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2040859	2041039	+	ntar_492	2040859	2041039	1	2040859	2041039					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2041549	2042986	+	orf19.1785	2041549	2042986	1	2041549	2042986	2041670	2042650		orf19.9351|IPF13018.3|IPF13017.2|Contig4-2624_0006|orf6.214|orf6.2532|CA1168|CaO19.9351|CaO19.1785|IPF13017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2041977	2042740	-	ntar_493	2041977	2042740	1	2042740	2041977					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2042855	2047509	-	orf19.1783	2042855	2047509	1	2047509	2042855	2047410	2042944	YOR1	orf19.9349|orf19.9350|IPF16207.2|IPF25550.1|IPF13015.2|IPF13016.2|Contig4-2624_0003|Contig4-2624_0004|orf6.2530|orf6.2531|orf6.531|CA6193|CA6194|orf19.1784|YOR1.5f	Protein similar to S. cerevisiae Yor1p, which is a plasma membrane transporter of the ATP-binding cassette (ABC) family involved in resistance to aureobasidin A; transcription is specific to white cell type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2047932	2048177	+	ntar_494	2047932	2048177	1	2047932	2048177					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2048611	2049308	-	orf19.1782.1	2048611	2049308	2	2049308|2049220	2049301|2048611	2049308	2048611			ORF added to Assembly 21 based on comparative genome analysis; has intron [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2048811	2049045	+	ntar_495	2048811	2049045	1	2048811	2049045	2048923	2049045			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2049400	2050403	-	orf19.1782	2049400	2050403	1	2050403	2049400	2050319	2049600		orf19.9348|IPF16210.3|IPF16646.2|Contig4-1793_0006|Contig4-2624_0009|orf6.2529|CA1167|CaO19.1782|IPF16646	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2049406	2049707	+	ntar_496	2049406	2049707	1	2049406	2049707	2049573	2049707			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2050687	2051925	-	orf19.1780	2050687	2051925	1	2051925	2050687	2051925	2050687		orf19.9346|IPF25562.1|IPF16648.1|Contig4-1793_0004|orf6.2527|CA1166|CaO19.1780|CaO19.9346|IFO1	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2053354	2054822	-	orf19.1779	2053354	2054822	1	2054822	2053354	2054703	2053567	MP65	orf19.9345|SCW1|SCW10|IPF15898.1|IPF9023.3|Contig4-1875_0004|orf6.2667|CA0156|CA6263|SCW1.5f|CMP65|CaO19.1779|SCW1.3f|orf6.708	Cell surface mannoprotein; mycelial antigen; possible role in cell-wall glucan metabolism; has adhesin motif; O-glycosylation but no predicted N-glycosylation; induced by heat, upon germ tube formation, wall regeneration; diagnostic marker [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2056276	2056590	+	orf19.1778	2056276	2056590	1	2056276	2056590	2056276	2056590		IPF15902.2|orf6.2666|CaO19.1778	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2057720	2062397	+	orf19.1777	2057720	2062397	1	2057720	2062397	2058113	2062261		orf19.9344|IPF25575.1|IPF9029.2|Contig4-2728_0007|orf6.2665|CA1256|CaO19.1777|UBP15|CaO19.9344	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2062302	2064365	-	orf19.1776	2062302	2064365	1	2064365	2062302	2063383	2062415		orf19.9343|IPF25566.1|IPF9030.2|Contig4-2728_0006|orf6.2664|CA1255|CaO19.1776|CaO19.9343|IPF9030	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2064664	2066077	+	orf19.1774	2064664	2066077	1	2064664	2066077	2064862	2066004		IPF9033.1|IPF9034.1|Contig4-2728_0003|orf6.2662|orf6.2663|CA1253|CA1254|orf19.1775|CA0636|CA0639|FDH3.3f|FDH4.3f|IPF18026.2	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in an RHE model of oral candidiasis; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2066160	2066681	-	ntar_497	2066160	2066681	1	2066681	2066160	2066681	2066529			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2066856	2068533	+	orf19.1773	2066856	2068533	1	2066856	2068533	2066997	2068286	RAP1	orf19.9342|IPF9036.2|IPF19909.2|Contig4-2933_0003|orf6.1679|orf6.2661|CA0635|CaO19.1773|IPF9036	Protein similar to (but shorter than) S. cerevisiae Rap1p, a transcriptional regulator that binds telomeres and regulatory sequences; binds DNA; represses hyphal growth under yeast-favoring conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2068465	2071552	-	orf19.1772	2068465	2071552	1	2071552	2068465	2071552	2068598		orf19.9341|IPF25546.1|IPF16267.2|Contig4-1808_0003|orf6.1678|CA0634|CaO19.1772|CaO19.9341|IPF16267	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	2071675	2073776	+	orf19.1771	2071675	2073776	1	2071675	2073776	2071722	2073668		orf19.9340|IPF16269.2|IPF29311.1|Contig4-1714_0001|Contig4-1714_0002|orf6.1677|CA0633|CaO19.1771|CWC22|IPF16269	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2073301	2073483	-	ntar_498	2073301	2073483	1	2073483	2073301	2073483	2073310			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2073887	2074323	-	ntar_499	2073887	2074323	1	2074323	2073887	2074009	2073887			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2074634	2075497	+	orf19.1770	2074634	2075497	1	2074634	2075497	2074774	2075106	CYC1	orf19.9339|orf6.244|IPF25577.1|IPF17424.2|Contig4-1661_0006|CA0038|CaO19.1770|CaO19.9339	Cytochrome c; complements defects of an S. cerevisiae cyc1 cyc7 double mutant; transcriptionally regulated by iron; expression greater in high iron; alkaline downregulated; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2075713	2076974	+	orf19.1769	2075713	2076974	1	2075713	2076974	2075839	2076636		orf19.9338|IPF17476.2|IPF17425.2|Contig4-1661_0003|orf6.245|orf6.2868|CA1389|PLP2|CaO19.1769	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2076182	2076755	-	ntar_500	2076182	2076755	1	2076755	2076182	2076349	2076182			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2077093	2080353	+	orf19.1768	2077093	2080353	1	2077093	2080353	2077093	2080227		orf19.9337|IPF25564.1|IPF25556.1|IPF6151.2|IPF17474.2|Contig4-1661_0001|Contig4-2062_0011|orf6.2869|CA1390|IPF17474.5f|IPF17474	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	2080524	2080761	-	ntar_501	2080524	2080761	1	2080761	2080524					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2080976	2083096	+	orf19.1767	2080976	2083096	1	2080976	2083096	2081249	2083090		orf19.9336|IPF25557.1|IPF6149.2|Contig4-2062_0005|Contig4-2062_0006|orf6.2870|CA1392|CaO19.9336|CaO19.1767|IPF6149	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2083085	2083413	-	ntar_502	2083085	2083413	1	2083413	2083085					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2084490	2085695	+	orf19.1766	2084490	2085695	1	2084490	2085695	2084490	2085695		orf19.9335|IPF25563.1|IPF6146.2|Contig4-2031_0001|orf6.2871|CA1393|CaO19.9335|CaO19.1766|IFO3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2085834	2086104	-	ntar_503	2085834	2086104	1	2086104	2085834					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2088477	2090189	+	orf19.1765	2088477	2090189	1	2088477	2090189	2088810	2090066		orf19.9334|IPF19560.1|IPF19561.2|Contig4-2450_0006|orf6.189|orf6.2872|CA1394|CaO19.1765|IFO2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2090060	2091745	-	orf19.1764	2090060	2091745	1	2091745	2090060	2091410	2090562		orf19.9333|IPF16551.2|IPF29314.1|Contig4-2450_0007|orf6.2873|orf6.4085|CA6192|CaO19.1764|IPF29314	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2093348	2094460	+	orf19.1763	2093348	2094460	1	2093348	2094460	2093348	2094460	IFR1	orf19.9332|IPF17558.3|IPF17956.2|orf6.4086|CA2258|FZD5|CaO19.1763|CA1395|IPF17558|IPF17558.2	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	2094402	2095579	-	orf19.1762	2094402	2095579	1	2095579	2094402	2095472	2094663	OCA1	orf19.9331|IPF25568.1|IPF6845.2|Contig4-1964_0001|orf6.4087|CA2259|CaO19.1762|IPF6845	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to S. cerevisiae Oca1p; mutant shows virulence defect; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2095729	2096510	+	orf19.1761	2095729	2096510	1	2095729	2096510	2095818	2096333		orf19.9330|IPF25572.1|IPF6848.1|Contig4-1964_0004|orf6.4088|CA2260|OST2|CaO19.9330|CaO19.1761	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2096362	2097803	-	orf19.1760	2096362	2097803	1	2097803	2096362	2097593	2096718	RAS1	orf19.9329|IPF25567.1|IPF6849.2|Contig4-1964_0005|orf6.4089|CA2261|CaO19.9329|CaO19.1760	RAS signal transduction GTPase; regulates cAMP and MAP kinase pathways; role in hyphal induction, virulence, apoptosis, heat-shock sensitivity; nonessential; glutamine-rich C terminus; complements viability of S. cerevisiae ras1 ras2 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2097930	2098448	-	ntar_504	2097930	2098448	1	2098448	2097930					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2098732	2100771	-	orf19.1759	2098732	2100771	1	2100771	2098732	2100586	2099138	PHO23	orf19.9328|IPF6854.2|IPF29313.1|Contig4-1958_0002|orf6.4090|orf6.925|CA0227|CaO19.1759	Protein not essential for viability; similar to S. cerevisiae Pho23p, which is a probable component of the Rpd3 histone deacetylase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2099039	2099247	+	ntar_505	2099039	2099247	1	2099039	2099247					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2101793	2102146	+	ntar_506	2101793	2102146	1	2101793	2102146					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2102739	2104804	+	orf19.1757	2102739	2104804	1	2102739	2104804	2102914	2104665		orf19.9326|IPF25560.1|IPF6857.1|Contig4-2851_0019|orf6.4092|CA2262|CaO19.9326|CaO19.1757|IPF6857	Putative transcription factor with zinc finger DNA-binding motif; transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2106621	2106939	+	ntar_507	2106621	2106939	1	2106621	2106939					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2107158	2109164	+	orf19.1756	2107158	2109164	1	2107158	2109164	2107827	2109038	GPD1	orf19.9325|IPF25561.1|IPF6860.1|Contig4-2851_0007|orf6.4093|CA2263|CaO19.1756|CaO19.9325	Protein similar to S. cerevisiae glycerol-3-phosphate dehydrogenase (enzyme of glycerol biosynthesis); biofilm-induced expression; regulated by Efg1p; regulated by Tsa1p, Tsa1Bp under H2O2 stress conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2107193	2107398	-	ntar_508	2107193	2107398	1	2107398	2107193					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2109176	2111954	-	orf19.1755	2109176	2111954	1	2111954	2109176	2111839	2109305	SET2	orf19.9324|IPF25548.1|IPF6862.2|Contig4-2851_0005|Contig4-2851_0006|orf6.4094|CA2264|CaO19.1755|CaO19.9324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2112053	2113990	-	orf19.1754	2112053	2113990	1	2113990	2112053	2113841	2112408		orf19.9323|IPF16060.2|IPF6866.1|Contig4-2851_0003|orf6.1077|orf6.4095|CA2265|CMK2|CaO19.1754	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2114489	2116887	+	orf19.1753	2114489	2116887	1	2114489	2116887	2114501	2116780	PUS7	orf19.9322|IPF16061.2|IPF6867.2|Contig4-2851_0001|orf6.1078|orf6.4096|CA0294|CaO19.1753|IPF16061	Protein similar to S. cerevisiae tRNA modification protein; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2116819	2119549	-	orf19.1751	2116819	2119549	1	2119549	2116819	2119291	2117063	SPT23	orf19.9320|IPF25551.1|IPF10741.2|orf6.1080|orf6.1828|CA0726|MGA2|CaO19.1751|IPF10741	Protein involved in regulation of unsaturated fatty acid biosynthesis; controls the expression of the Ole1p delta-9-fatty acid desaturase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2119616	2120271	+	ntar_509	2119616	2120271	1	2119616	2120271	2119616	2119831			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2120498	2122811	+	orf19.1750	2120498	2122811	2	2120498|2121881	2121038|2122811	2120962	2122595		orf19.9319|IPF25570.1|IPF10745.2|Contig4-2591_0005|Contig4-2591_0006|orf6.1827|CaO19.9319|CaO19.1750	Predicted ORF in Assemblies 19, 20 and 21; similar to mammalian SR-like RNA splicing factor; gene has intron; significant changes made to ORF with coordinate updates (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2122811	2124948	-	orf19.1748	2122811	2124948	1	2124948	2122811	2124870	2122825		orf19.9316|IPF19639.1|IPF19640.2|Contig4-2591_0004|orf6.1825|orf6.2021|CA0853|CaO19.1748|IPF19640	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2125354	2127580	-	orf19.1747	2125354	2127580	1	2127580	2125354	2127438	2125441	KIP2	orf19.9315|IPF10752.2|IPF16668.3|Contig4-2591_0011|orf6.2020|orf6.86|CA0852|CaO19.1747	Protein similar to S. cerevisiae Kip2p; transcription is repressed in response to alpha pheromone in SpiderM medium; periodic mRNA expression, peak at cell-cycle G2/M phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2127772	2129101	+	ntar_510	2127772	2129101	1	2127772	2129101	2128312	2128587			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2127819	2129144	-	orf19.1746	2127819	2129144	1	2129144	2127819	2129144	2127819		orf19.9313|IPF16670.2|IPF10753.2|Contig4-2199_0007|orf6.2018|orf6.85|CA0851|Ca38F10.06|CaO19.1746|SSP2|IPF16670	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae meiosis-specific, spore-wall-localized protein Ssp2p, which is required for wild-type formation of outer spore wall in S. cerevisiae [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2129334	2130976	-	orf19.1745	2129334	2130976	1	2130976	2129334	2129898	2129404		orf19.9312|IPF16671.1|IPF15008.3|Contig4-2199_0006|orf6.2017|orf6.70|CA0850|LDG1|CaO19.1745|IPF16671	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2131084	2132090	+	orf19.1744	2131084	2132090	1	2131084	2132090	2131163	2131978	HEM4	orf19.9311|orf6.2016|orf6.69|IPF15006.2|IPF19454.2|Contig4-2199_0003|CA0849|CaO19.1744	Protein described as uroporphyrinogen III synthase; transcriptionally regulated by iron; expression greater in high iron or elevated CO2; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2132019	2134537	-	orf19.1743	2132019	2134537	1	2134537	2132019	2134268	2132241	ACS1	orf19.9310|IPF25554.1|IPF15005.2|Contig4-2199_0001|orf6.2015|CA0848|CaO19.9310|CaO19.1743	Putative acetyl-CoA synthetase, similar to S. cerevisiae Acs1p; upregulated in the presence of human neutrophils; fluconazole-downregulated; regulated by Nrg1p and Mig1p; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2136958	2138671	-	orf19.1742	2136958	2138671	1	2138671	2136958	2138454	2137432	HEM3	orf19.9309|orf6.1095|IPF25565.1|IPF15629.3|Contig4-2299_0001|Contig4-2299_0002|CA0306|CaO19.1742|CaO19.9309|IPF15629.2	Hydroxymethylbilane synthase (uroporphyrinogen I synthase); catalyzes conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in the heme biosynthetic pathway; transcription greater in high iron, CO2; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2139918	2140416	+	ntar_511	2139918	2140416	1	2139918	2140416					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2140549	2140775	+	ntar_512	2140549	2140775	1	2140549	2140775	2140575	2140775			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2141384	2141571	-	ntar_513	2141384	2141571	1	2141571	2141384					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2151608	2153146	+	orf19.3490	2151608	2153146	1	2151608	2153146	2151608	2153146	FGR6-4	IPF12875.1|Contig4-2681_0014|CA6237|CaO19.3490|IFV10	Protein lacking an ortholog in S. cerevisiae; member of a family encoded by FGR6-related genes in the RB2 repeat sequence; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2156279	2159145	-	orf19.5316	2156279	2159145	1	2159145	2156279	2159079	2156749	FGR29	orf19.12776|IPF21826.1|IPF817.1|Contig4-2899_0017|orf6.8305|CA5483|CaO19.5316|CaO19.12776|IPF817	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2159252	2162363	-	orf19.5318	2159252	2162363	1	2162363	2159252	2162337	2159425	RAD1	orf19.12778|orf19.12779|IPF21839.1|IPF815.2|Contig4-2899_0012|Contig4-2899_0014|orf6.8307|orf6.8308|CA5484|CA5485|orf19.5319|RAD1.53f|RAD1.3f	Transcription is regulated by Nrg1p; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2162456	2163226	+	orf19.5320	2162456	2163226	1	2162456	2163226	2162539	2163045	NCE4	orf19.12780|IPF21883.1|IPF813.1|Contig4-2899_0010|orf6.8309|CA5486|CaO19.12780|CaO19.5320|IPF813	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G2/M phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2162917	2165078	-	orf19.5321	2162917	2165078	1	2165078	2162917	2164985	2163063		orf19.12781|IPF21834.1|IPF812.1|Contig4-2899_0009|orf6.8310|CA5487|CaO19.5321|MET12|CaO19.12781	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2165323	2166267	-	orf19.5322	2165323	2166267	1	2166267	2165323	2166211	2165453		orf19.12782|IPF21870.1|IPF810.1|Contig4-2899_0005|orf6.8311|CA5488|ATG27|CaO19.12782|CaO19.5322|IPF810	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2166535	2167734	+	orf19.5323	2166535	2167734	1	2166535	2167734	2166626	2167654	MDH1-3	orf19.12783|IPF21860.1|IPF807.1|MDH12|Contig4-2899_0003|orf6.8312|CA5489|MDH3|CaO19.12783|CaO19.5323	Predicted malate dehydrogenase; farnesol regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2167572	2167874	-	tv(uac)1	2167572	2167874	2	2167874|2167814	2167837|2167572				tV(UAC)1.2	tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2168512	2168599	+	tf(gaa)4	2168512	2168599	2	2168512|2168564	2168548|2168599				tF(GAA)4.2	tRNA-Phe predicted by tRNAscan-SE; has atypical tertiary T15A48 basepair (rather than R15Y48 basepair) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2169370	2169780	+	ntar_514	2169370	2169780	1	2169370	2169780					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2169709	2171072	-	orf19.5325	2169709	2171072	1	2171072	2169709	2171046	2169760	KIN3	orf19.12785|IPF21850.1|IPF802.1|Contig4-2899_0018|orf6.8314|CA5490|CaO19.12785|CaO19.5325	Protein similar to S. cerevisiae Kin3p; induced under Cdc5p depletion; shows Mob2p-dependent hyphal regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2171278	2172139	+	orf19.5326	2171278	2172139	1	2171278	2172139	2171303	2172112		orf19.12786|IPF796.2|IPF798.1|orf6.8315|CA5491|CaO19.5326|MIG2|CaO19.12786|IPF798	Putative transcription factor with zinc finger DNA-binding motif; possible ortholog of S. cerevisiae Mig2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2172002	2179376	-	orf19.5328	2172002	2179376	1	2179376	2172002	2179365	2172118	GCN1	orf19.12788|orf19.12789|orf19.12793|IPF21822.1|IPF797.1|Contig4-3102_0061|orf6.8317|orf6.8322|orf6.8318|CA5492|CA5493|orf19.5329|orf19.5333|GCN1.3f	Protein not essential for viability; similar to S. cerevisiae Gcn1p, which is a regulator of the protein kinase Gcn2p involved in translation initiation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2179364	2179943	+	ntar_515	2179364	2179943	1	2179364	2179943	2179364	2179528			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2179713	2180453	-	orf19.5334	2179713	2180453	1	2180453	2179713	2180422	2179811		orf19.12794|IPF21876.1|IPF785.1|Contig4-3102_0060|orf6.8323|CA5494|CaO19.12794|TIS11|CaO19.5334|IPF85	Predicted ORF in Assemblies 19, 20 and 21; transcription regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2181282	2184965	+	orf19.5335	2181282	2184965	1	2181282	2184965	2181357	2184926	SGS1	orf19.12795|IPF21906.1|IPF783.1|Contig4-3102_0059|orf6.8324|CA5495|CaO19.5335|CaO19.12795	Protein described as a DNA helicase; haploinsufficient for wild-type lifespan; upregulated upon treatment of biofilm with farnesol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2184855	2185734	-	ntar_516	2184855	2185734	1	2185734	2184855	2185049	2184855			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2185029	2185713	+	orf19.5337	2185029	2185713	1	2185029	2185713	2185048	2185575	UBC15	orf19.12797|IPF21878.1|IPF779.1|Contig4-3102_0058|orf6.8326|CA5496|CaO19.12797|CaO19.5337|IPF779	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2185889	2186078	-	ntar_517	2185889	2186078	1	2186078	2185889					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2186303	2187484	+	orf19.5338	2186303	2187484	1	2186303	2187484	2186699	2187484	GAL4	orf19.12798|IPF21869.1|IPF776.1|Contig4-3102_0054|orf6.8327|CA5497|CaO19.5338|CaO19.12798|IPF776	Transcription factor with zinc cluster DNA-binding motif involved in control of glycolysis; ortholog of S. cerevisiae Gal4p, but not involved in the regulation of galactose utilization genes; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2187529	2188041	+	orf19.5339	2187529	2188041	1	2187529	2188041	2187529	2187873		orf19.12799|IPF21907.1|IPF28082.1|orf6.8328|CaO19.12799|CaO19.5339	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2188130	2189791	+	orf19.5340	2188130	2189791	1	2188130	2189791	2188145	2189791		orf19.12800|IPF21844.1|IPF772.1|Contig4-3102_0051|Contig4-3102_0052|orf6.8329|CA5498|CaO19.12800|CaO19.5340|IPF772	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2189804	2190749	+	orf19.5341	2189804	2190749	1	2189804	2190749	2189961	2190749	RPS4A	orf19.12801|IPF21871.1|IPF771.1|Contig4-3102_0050|orf6.8330|CA5499|RPS4|RPS41|CaO19.5341|CaO19.12801	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2190842	2192597	+	orf19.5342	2190842	2192597	1	2190842	2192597	2190842	2192530		orf19.12802|IPF21840.1|IPF768.1|Contig4-3102_0049|orf6.8331|CA5500|CaO19.12802|CaO19.5342|IPF768	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2192513	2193257	-	orf19.5342.1	2192513	2193257	2	2193257|2193069	2193127|2192513	2193142	2192540	MTR2	IPF21880.1|IPF767.1|Contig4-3102_0046|CA5501|MTR2.3f|MTR2.3	Nuclear export protein; member of NTF2 family; monomeric in solution; interacts with Mex67p via the NTF2-like domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2193258	2193786	+	orf19.5342.2	2193258	2193786	1	2193258	2193786	2193483	2193671			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2194359	2196100	+	orf19.5343	2194359	2196100	1	2194359	2196100	2194673	2196022	ASH1	orf19.12803|orf6.8332|IPF21849.1|IPF763.2|Contig4-3102_0043|CA5502|CaO19.5343|CaO19.12803|IPF763	GATA-like transcription factor; localizes to nuclei of daughter cells and hyphal tip cells; mRNA localization is mediated by binding to She3p; required for wild-type virulence and filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2195243	2196052	-	ntar_518	2195243	2196052	1	2196052	2195243	2195579	2195373			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2196190	2197338	+	orf19.5345	2196190	2197338	1	2196190	2197338	2196208	2197227		orf19.12805|IPF21861.1|IPF761.1|Contig4-3102_0041|orf6.8334|CA5503|DSK2|CaO19.5345|CaO19.12805	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2197368	2198605	+	orf19.5346	2197368	2198605	1	2197368	2198605	2197387	2198598		orf19.12806|IPF21852.1|IPF758.1|Contig4-3102_0038|orf6.8335|CA5504|CaO19.5346|TAF65|CaO19.12806	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2198860	2202012	+	orf19.5348	2198860	2202012	2	2198860|2198968	2198905|2202012	2198883	2201968	TPS3	orf19.12808|IPF21920.1|IPF753.1|Contig4-3102_0037|orf6.8337|CA5505|TPS3.3	Protein described as regulatory subunit of trehalose-phosphate synthase; regulated by Efg1p; biofilm-repressed expression; regulated by Tsa1p, Tsa1Bp under H2O2 stress conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2201935	2202856	-	orf19.5350	2201935	2202856	1	2202856	2201935	2202837	2201965		orf19.12810|IPF21867.1|IPF748.1|Contig4-3102_0035|orf6.8339|CA5506|CaO19.5350|CTK3|CaO19.12810|IPF748	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2203000	2203724	+	orf19.5351	2203000	2203724	1	2203000	2203724	2203030	2203494	TIF11	orf19.12811|IPF21884.1|IPF747.1|Contig4-3102_0034|orf6.8340|CA5507|CaO19.12811|CaO19.5351	Predicted translation initiation factor eIF1a; possibly transcriptionally regulated upon hyphal formation; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2203538	2204839	-	orf19.5352	2203538	2204839	1	2204839	2203538	2204722	2203616		orf19.12812|IPF745|IPF21859.1|IPF745.1|Contig4-3102_0032|orf6.8341|CA5508|CaO19.5352|CaO19.12812	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2205013	2205987	+	orf19.5353	2205013	2205987	1	2205013	2205987	2205013	2205987		orf19.12813|IPF21863.1|IPF743.1|Contig4-3102_0028|Contig4-3102_0029|orf6.8342|CA5509|CaO19.5353|CaO19.12813|IPF743	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2205530	2208740	-	orf19.5356	2205530	2208740	1	2208740	2205530	2208734	2205984		orf19.12816|IPF21819.1|IPF741.1|Contig4-3102_0027|orf6.8345|CA5510|CaO19.12816|CaO19.5356|IPF741	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2208854	2211108	-	orf19.5357	2208854	2211108	1	2211108	2208854	2211088	2208884	AKL1	orf19.12817|IPF21828.1|IPF737.1|Contig4-3102_0024|Contig4-3102_0025|orf6.8346|CA5511|CaO19.5357|CaO19.12817	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2211188	2213298	-	orf19.5358	2211188	2213298	1	2213298	2211188	2213298	2211232		orf19.12818|IPF21829.1|IPF733.1|Contig4-3102_0023|orf6.8347|CA5512|CaO19.12818|ORC2|CaO19.5358	Phosphorylated protein of unknown function; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2213339	2214045	+	orf19.5360	2213339	2214045	1	2213339	2214045	2213416	2213751	RPC11	orf19.12820|IPF21901.1|IPF731.1|Contig4-3102_0022|orf6.8349|CA5513|CaO19.5360|CaO19.12820	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2213729	2215361	-	orf19.5362	2213729	2215361	1	2215361	2213729	2215361	2213748	PSO2	orf19.12822|IPF21842.1|IPF730.1|Contig4-3102_0020|Contig4-3102_0021|orf6.8351|CA5514|CaO19.12822|CaO19.5362|IPF730	Predicted ORF in Assemblies 19, 20 and 21; expressed in opaque or white MTLa/MTLa or MTLalpha/MTLalpha, but not MTLa/MTLalpha cells; telomere-proximal gene; mutation does not affect white-to-opaque phenotypic switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2215409	2216216	-	orf19.5363	2215409	2216216	1	2216216	2215409	2216084	2215425		orf19.12823|IPF21873.1|IPF728.1|Contig4-3102_0019|orf6.8352|CA5515|CaO19.12823|CaO19.5363|SAT2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2215417	2217650	+	orf19.5364	2215417	2217650	2	2215417|2216398	2216211|2217650	2216503	2217414		orf19.12824|IPF21865.1|IPF726.1|Contig4-3102_0016|orf6.8353|CA5516|ECM2|CaO19.5364|CaO19.12824|IPF726	Predicted ORF in Assemblies 19, 20 and 21; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2217188	2221143	-	orf19.5365	2217188	2221143	1	2221143	2217188	2221049	2217417		orf19.12825|orf19.12826|IPF721.3f|IPF21841.1|IPF724.2|IPF721.5f|Contig4-3102_0014|Contig4-3102_0015|orf6.8354|orf6.8355|CA5517|CA5518|orf19.5366	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2221122	2221616	+	orf19.5365.1	2221122	2221616	1	2221122	2221616	2221316	2221564			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2221673	2224063	+	orf19.5367	2221673	2224063	1	2221673	2224063	2221673	2224063	RDH54	orf19.12827|IPF21823.1|IPF718.1|Contig4-3102_0011|orf6.8356|CA5519|CaO19.12827|CaO19.5367	Protein described as having role in DNA recombination, repair; transcriptionally induced by interaction with macrophage [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2223920	2225674	-	orf19.5368	2223920	2225674	1	2225674	2223920	2225673	2224060		orf19.12828|IPF21843.1|IPF714.1|Contig4-3102_0010|orf6.8357|CA5520|CaO19.12828|CaO19.5368|IPF714	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2225884	2227061	-	orf19.5369	2225884	2227061	1	2227061	2225884	2227017	2225932		orf19.12829|IPF21858.1|IPF712.1|Contig4-3102_0008|orf6.8358|CA5521|HEM12|CaO19.5369|CaO19.12829	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2227464	2228636	+	orf19.5370	2227464	2228636	1	2227464	2228636	2227467	2228636		orf19.12830|IPF21856.1|IPF708.1|Contig4-2210_0006|Contig4-3079_0036|Contig4-3102_0006|orf6.8359|CA5522|CaO19.12830|CaO19.5370|IPF708	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr2	2228892	2229916	-	ntar_519	2228892	2229916	1	2229916	2228892					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1028	1254	-	ntar_520	1028	1254	1	1254	1028					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1386	2040	-	ntar_521	1386	2040	1	2040	1386	1711	1508			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	2182	3825	+	ntar_522	2182	3825	1	2182	3825	2979	3164			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	3616	4880	-	orf19.5474	3616	4880	1	4880	3616	4880	3828		orf19.12929|IPF21741.1|IPF2681.1|orf6.8710|CaO19.5474|CaO19.12929	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	3999	4823	+	orf19.5475	3999	4823	1	3999	4823	3999	4823		IPF21738.1|IPF2680.1|orf6.6377|orf6.8711	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	4903	8097	-	orf19.5469	4903	8097	1	8097	4903	8097	4903		orf19.12924|IPF21813.1|IPF2690.1|Contig4-2935_0001|orf6.1630|orf6.6371|orf6.8705|YRF1|CaO19.5469|CaO19.12924	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	5971	7002	+	orf19.5472	5971	7002	1	5971	7002	5971	7002		IPF20006.2|IPF2686.1|orf6.6374|orf6.8708	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	8212	8532	-	ntar_523	8212	8532	1	8532	8212					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	13756	14265	+	orf19.5467	13756	14265	1	13756	14265	13756	14265	TLO7	orf19.12922|IPF21767.1|IPF4141.1|orf6.8703|CA5808|TLO7b|CaO19.5467|CTA225|CaO19.12922|CTA20.5f	Member of a family of telomere-proximal genes of unknown function; may be spliced in vivo [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	15461	15592	-	ntar_524	15461	15592	1	15592	15461					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	15852	16357	+	orf19.5466	15852	16357	1	15852	16357	15901	16308	RPS24	orf19.12921|IPF21774.1|IPF4146.1|RPS24A|Contig4-3013_0008|orf6.8702|CA5807|CaO19.5466|CaO19.12921	Predicted ribosomal protein; hyphal downregulated; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription activated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	16407	17105	+	orf19.5465	16407	17105	1	16407	17105	16407	17105		orf19.12920|IPF21752.1|IPF4149.1|Contig4-3013_0009|orf6.8701|CA5806|CaO19.5465|YJU2|CaO19.12920|IPF4149	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	16960	19538	-	orf19.5463	16960	19538	1	19538	16960	19533	17074		orf19.12918|IPF21695.1|IPF4153.2|Contig4-3013_0010|Contig4-3013_0013|orf6.8699|CA5805|SEC6|CaO19.5463|CaO19.12918|IPF4153	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	17482	18108	+	orf19.5464	17482	18108	1	17482	18108	17482	18108		IPF21744.1|IPF4152.1|orf6.8700	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	19578	21197	-	orf19.5459	19578	21197	1	21197	19578	21179	19602		orf19.12914|IPF21717.1|IPF4160.1|Contig4-3013_0014|orf6.8695|CA5804|PBP1|CaO19.5459|CaO19.12914|IPF4160	Putative protein of unknown function, transcription is upregulated in an RHE model of oral candidiasis and in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	19605	20204	+	orf19.5462	19605	20204	1	19605	20204	19605	20204			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	20107	20643	+	orf19.5461	20107	20643	1	20107	20643	20107	20643			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	21254	22687	-	orf19.5457	21254	22687	1	22687	21254	22687	21254		orf19.12912|IPF21728.1|IPF4163.1|Contig4-3013_0015|orf6.8693|CA5803|CaO19.12912|CaO19.5457|IPF4163	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	22745	23092	-	orf19.5455	22745	23092	1	23092	22745	23092	22745		orf19.12910|IPF21791.1|IPF4164.1|Contig4-3013_0017|orf6.8691|CA5802|CaO19.12910|VTC1|CaO19.5455|IPF4164	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	23153	24971	-	orf19.5454	23153	24971	1	24971	23153	24971	23211	DAL1	orf19.12909|IPF21709.1|IPF4171.1|Contig4-3013_0020|orf6.8690|CA5801|CaO19.12909|CaO19.5454	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p and Mig1p; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	23640	23894	+	ntar_525	23640	23894	1	23640	23894	23640	23894			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	24430	24810	+	orf19.5451	24430	24810	1	24430	24810	24430	24810		IPF21764.1|IPF4170.1|orf6.8687	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	25025	26275	-	orf19.5450	25025	26275	1	26275	25025	26266	25109		orf19.12905|IPF18064.2|IPF4175.1|Contig4-3013_0021|orf6.8686|CA5800|CaO19.5450|ETR1|CaO19.12905|IPF4175	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	26339	26985	-	orf19.5449	26339	26985	1	26985	26339	26975	26343		orf19.12904|IPF21758.1|IPF4176.1|Contig4-3013_0023|orf6.8685|CA5799|CaO19.12904|CaO19.5449|IPF4176	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	28278	30196	+	orf19.5447	28278	30196	1	28278	30196	28278	30170	HGT19	orf19.12902|ITR1|IPF21705.1|IPF4181.1|Contig4-3013_0026|orf6.8683|CA5798|CaO19.5447|CaO19.12902|IPF4181	Putative glucose/myo-inositol transporter of major facilitator superfamily; 12 transmembrane segments, extended N terminus; expressed in rich medium, 2% glucose; phagocytosis-induced; C. albicans glucose transporter family has 20 members [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	29708	30205	-	orf19.5446	29708	30205	1	30205	29708	30205	29708		IPF21760.1|IPF4182.1|orf6.8682|CA5797|CaO19.12901|CaO19.5446|IPF4182	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; regulated by Ssn6p; ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	30220	31575	-	orf19.5445	30220	31575	1	31575	30220	31575	30220	GLO3	orf19.12900|IPF21730.1|IPF4185.1|Contig4-3013_0028|orf6.8681|CA5796|CaO19.5445|CaO19.12900	Protein not essential for viability; similar to S. cerevisiae Glo3p, which is a GTPase-activating protein for ADP-ribosylation factors [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	31632	33045	-	orf19.5444	31632	33045	1	33045	31632	32992	31718		orf19.12899|IPF21736.1|IPF4189.1|Contig4-3013_0030|orf6.8680|CA5795|TIM44|CaO19.12899|CaO19.5444	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	33058	34476	-	orf19.5443	33058	34476	1	34476	33058	34464	33094		orf19.12898|IPF21731.1|IPF4191.1|Contig4-3013_0031|orf6.8679|YBL098W|CA5794|CaO19.5443|BNA4|CaO19.12898|IPF4191	Putative kynurenine 3-monooxygenase, involved in NAD biosynthesis; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	34514	36088	-	orf19.5442	34514	36088	1	36088	34514	36054	34558		orf19.12897|IPF21720.1|IPF4192.1|orf6.8678|CA5793|CaO19.12897|CaO19.5442|IPF4192	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	36127	38813	-	orf19.5441	36127	38813	1	38813	36127	38813	36189	ULP3	orf19.12896|IPF21693.1|IPF4195.1|orf6.8677|CA5792|CaO19.12896|ULP2|CaO19.5441|IPF4195	Putative SUMO deconjugation enzyme that removes the small ubiquitin-like modifier (SUMO) from proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	39136	40592	+	orf19.5440	39136	40592	1	39136	40592	39195	40592	RPT2	orf19.12895|IPF21719.1|IPF4196.2|Contig4-2435_0006|orf6.8676|CA5791|CaO19.5440|CaO19.12895	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	40606	43063	+	orf19.5439	40606	43063	1	40606	43063	40606	42942		orf19.12894|IPF21698.1|IPF1144.2|orf6.8675|CA5790|CaO19.12894|CaO19.5439|IPF1144	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	42227	43446	-	orf19.5438	42227	43446	1	43446	42227	43340	42951		orf19.12893|IPF21785.1|IPF1143.1|orf6.8674|CA5789|CaO19.5438|CaO19.12893|IPF1143	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	44953	45998	+	orf19.5437	44953	45998	1	44953	45998	45115	45879	RHR2	orf19.12892|GPP1|IPF21745.1|IPF1139.1|Contig4-2896_0003|orf6.8673|CA5788|CaO19.12892|CaO19.5437	Putative glycerol 3-phosphatase; roles in osmotic tolerance, glycerol accumulation in response to salt; regulated by macrophage, stress response, yeast-hyphal switch, pheromone, GCN4, HOG1, NRG1, TUP1; antigenic in murine systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	46144	48277	+	orf19.5436	46144	48277	1	46144	48277	46161	48251	UTP8	orf19.12891|IPF21700.1|IPF1136.2|Contig4-2896_0004|Contig4-2896_0005|orf6.8672|CA5787|CaO19.5436|CaO19.12891|IPF1136	Essential protein involved in tRNA export from the nucleus and ribosomal small subunit biogenesis; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	48371	48843	+	orf19.5433	48371	48843	1	48371	48843	48422	48775		orf19.12888|IPF21792.1|IPF1134.1|Contig4-2896_0007|orf6.8669|CA5786|FMP16|CaO19.5433|CaO19.12888|IPF1134	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	48912	49708	+	orf19.5432	48912	49708	1	48912	49708	48915	49538	TPT1	orf19.12887|IPF21754.1|IPF1133.1|Contig4-2896_0008|orf6.8668|CA5785|CaO19.12887|CaO19.5432	tRNA 2'-phosphotransferase; enzyme of tRNA splicing; functionally complements viability of S. cerevisiae tpt1 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	50280	50646	-	ntar_526	50280	50646	1	50646	50280	50474	50280			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	50894	52493	+	orf19.5431	50894	52493	1	50894	52493	51706	52413		orf19.12886|IPF21750.1|IPF1129.1|Contig4-2896_0012|orf6.8667|CA5784|CaO19.5431|CaO19.12886|IPF1129	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	52545	53375	-	orf19.5430	52545	53375	1	53375	52545	53342	52683	BUD21	orf19.12885|IPF21749.1|IPF1128.1|Contig4-2896_0013|orf6.8666|CA5783|CaO19.5430|CaO19.12885|IPF1128	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	53429	55574	-	orf19.5429	53429	55574	1	55574	53429	55492	53465		orf19.12884|IPF21704.1|IPF1127.2|Contig4-2896_0014|Contig4-2896_0016|orf6.8665|CA5782|CaO19.5429|CaO19.12884|IPF1127	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	55610	56898	+	orf19.5428	55610	56898	1	55610	56898	55651	56463		orf19.12883|IPF21746.1|IPF1126.2|Contig4-2896_0018|orf6.8664|CA5781|CaO19.5428|ATX2|CaO19.12883|IPF1126	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	56384	59403	-	orf19.5426	56384	59403	1	59403	56384	59342	56493		orf19.12881|IPF21689.1|IPF1123.2|Contig4-2896_0020|orf6.8662|CA5780|CaO19.12881|CaO19.5426|IPF1123	Putative patatin-like phospholipase; macrophage-regulated gene; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	59640	62423	+	orf19.5425	59640	62423	1	59640	62423	59837	62410		orf19.12880|IPF21691.1|IPF1121.2|Contig4-2864_0001|Contig4-2864_0002|orf6.8661|CA5779|CaO19.5425|CaO19.12880|IPF1121	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	59698	60243	-	orf19.5424	59698	60243	1	60243	59698	60243	59698		IPF21766.1|IPF1120.2|orf6.8660|CaO19.12879|CaO19.5424	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	62513	63184	+	orf19.5423	62513	63184	1	62513	63184	62513	63145	EST3	orf19.12878|orf6.8659|IPF21756.1|IPF1119.2|Contig4-2864_0003|CA5778|CaO19.12878|CaO19.5423|IPF1119	Telomerase subunit; required for telomere maintenance in vivo; separable roles in telomerase activity and processivity; not required for catalytic activity in vitro; related to mammalian Tpp1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	63235	63929	+	orf19.5422	63235	63929	1	63235	63929	63282	63911		orf19.12877|IPF21761.1|IPF1118.1|Contig4-2864_0004|orf6.8658|CA5777|CaO19.12877|CaO19.5422|IPF1118	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	63928	65131	-	orf19.5420	63928	65131	1	65131	63928	65094	63988		orf19.12875|IPF21739.1|IPF1116.1|Contig4-2864_0005|orf6.8656|CA5776|RML2|CaO19.12875|CaO19.5420	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	65350	66257	+	orf19.5419	65350	66257	1	65350	66257	65437	66054	ATP5	orf19.12874|IPF21757.1|IPF1114.1|Contig4-2864_0006|orf6.8655|CA5775|CaO19.5419|CaO19.12874	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	66434	67995	+	orf19.5418	66434	67995	1	66434	67995	66463	67896		orf19.12873|IPF21724.1|IPF1113.1|Contig4-2864_0007|orf6.8654|CA5774|CaO19.12873|CaO19.5418|IPF1113	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	67848	68968	-	orf19.5417	67848	68968	1	68968	67848	68837	68046	DOT5	orf19.12872|IPF21747.1|IPF1111.1|Contig4-2864_0008|orf6.8653|CA5773|CaO19.5417|CaO19.12872	Alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	69858	71745	+	orf19.5416	69858	71745	1	69858	71745	70068	71693	ESA1	orf19.12871|IPF21714.1|IPF1107.1|Contig4-2864_0013|orf6.8652|CA5772|CaO19.5416|CaO19.12871	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	71532	72939	-	orf19.5413	71532	72939	1	72939	71532	72883	71714		orf19.12868|IPF21740.1|IPF1104.1|Contig4-2864_0015|orf6.8649|CA5771|PRP46|CaO19.12868|CaO19.5413|IPF1104	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	72981	74119	+	orf19.5412	72981	74119	1	72981	74119	73019	74104		orf19.12867|IPF21742.1|IPF1103.2|Contig4-2864_0016|orf6.8648|CA5770|CaO19.12867|CaO19.5412|IPF1103	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	74237	75020	+	orf19.5411	74237	75020	1	74237	75020	74279	74863		orf19.12866|IPF21762.1|IPF1101.2|orf6.8647|CA5769|CaO19.5411|UBC12|CaO19.12866	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	74847	76531	-	orf19.5410	74847	76531	1	76531	74847	76422	74962		orf19.12865|IPF21729.1|IPF1099.1|Contig4-2289_0002|orf6.8646|CA5768|CaO19.5410|PAC1|CaO19.12865	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	76909	77944	-	orf19.5409	76909	77944	1	77944	76909	77889	77128		orf19.12864|IPF21748.1|IPF1098.1|Contig4-2289_0004|orf6.8645|CA5767|IST1|CaO19.12864|CaO19.5409|IPF1098	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	78054	80524	-	orf19.5408	78054	80524	1	80524	78054	80270	78180		orf19.12863|IPF21701.1|IPF1097.1|Contig4-2289_0005|orf6.8644|CA5766|CaO19.5408|HRK1|CaO19.12863|IPF1097	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	81613	83085	-	orf19.5407	81613	83085	1	83085	81613	83028	81718	SOF1	orf19.12862|IPF21734.1|IPF1095.1|Contig4-3071_0003|orf6.8643|CA5765|CaO19.12862|CaO19.5407	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	83540	85863	-	orf19.5406	83540	85863	1	85863	83540	85030	83705		orf19.12861|IPF21737.1|IPF20031.1|Contig4-3071_0005|Contig4-3071_0006|orf6.8642|CA5764|PSR1|CaO19.5406|CaO19.12861|IPF20031	Putative protein of unknown function, required for normal filamentous growth; mRNA binds to She3p and is localized to hyphal tips; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	87914	88757	+	ntar_527	87914	88757	1	87914	88757					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	88863	90603	+	orf19.5404	88863	90603	1	88863	90603	88912	90603	FLO9	orf19.12859|IPF21711.1|IPF1089.1|Contig4-3071_0011|orf6.8640|CA5763|IFF10|CaO19.12859|CaO19.5404|IFF10.5f|IFF10.5	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	90578	92662	+	orf19.5401	90578	92662	1	90578	92662	90578	92647		orf19.12856|IPF21702.1|IPF1084.2|IPF1084.3|Contig4-3071_0012|orf6.8637|CA5762|CaO19.12856|CaO19.5401|IFF10.3f	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	90951	92676	+	orf19.5402	90951	92676	1	90951	92676	90951	91517		IPF21765.1|IPF1081.2|orf6.8638	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	95652	97187	+	orf19.5399	95652	97187	1	95652	97187	95652	97187	IFF11	orf19.12854|IPF21721.1|IPF1076.1|IPF21769.1|IPF1075.1|Contig4-3071_0014|orf6.8635|orf6.8636|CA5761|orf19.5400|CaO19.12854|CaO19.5399	Secreted protein required for normal cell wall structure and for virulence; member of the IFF family [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	97309	97668	-	ntar_528	97309	97668	1	97668	97309	97668	97354			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	97601	98459	+	orf19.5397	97601	98459	1	97601	98459	97647	98375		orf19.12852|IPF21753.1|IPF1072.1|Contig4-3071_0017|orf6.8633|CA5760|CaO19.12852|COG7|CaO19.5397|IPF1072	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	98248	98919	-	orf19.5394.1	98248	98919	2	98919|98815	98878|98248	98888	98473		IPF21796.1|IPF1071.1|Contig4-3071_0018|CA5759|PET191|PET191.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	99188	103610	+	orf19.5395	99188	103610	1	99188	103610	99338	103045		orf19.12850|IPF21795.1|IPF1069.1|Contig4-3071_0019|orf6.8631|CA5758|CaO19.12850|CaO19.5395|IPF1069	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	103789	105389	+	orf19.5393	103789	105389	1	103789	105389	103831	105315		orf19.12848|IPF21727.1|IPF1067.1|Contig4-3071_0021|orf6.8629|CA5757|CaO19.12848|CaO19.5393|IPF1067	Putative cysteine sulfinate decarboxylase; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	107125	108939	+	orf19.5392	107125	108939	1	107125	108939	107369	108898	NGT1	orf19.12847|IPF21718.1|IPF1065.1|Contig4-3071_0022|orf6.8628|CA5756|CaO19.5392|CaO19.12847|IPF1065	N-acetylglucosamine (GlcNAc)-specific transporter; role in GlcNAc (but not serum) induced hyphal growth; localizes to plasma membrane; induced by GlcNAc, macrophage engulfment; 12 transmembrane, major facilitator superfamily [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	108606	108921	-	ntar_529	108606	108921	1	108921	108606	108921	108670			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	109086	112898	+	orf19.5391	109086	112898	1	109086	112898	109086	112745		orf19.12846|IPF21794.1|IPF1063.2|Contig4-3071_0027|Contig4-3071_0028|orf6.8627|CA5755|SAP130|CaO19.5391|CaO19.12846|IPF1063	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	112717	113604	-	orf19.5390	112717	113604	1	113604	112717	113604	113161		orf19.12845|orf6.8625|IPF1059.2|IPF21770.1|IPF1060.2|Contig4-3071_0030|orf6.8626|CA5753|CaO19.12845|CaO19.5390|CA5754|IPF1060|FKH1|FKH2	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	113161	115834	-	orf19.5389	113161	115834	2	115834|113660	113737|113161	115300	113161	FKH2	orf19.12844|orf6.8625|IPF21713.1|IPF1059.2|IPF1060.2|Contig4-3071_0032|orf6.8626|CA5753|CaO19.12844|CaO19.5389|CA5754|IPF1060|FKH1	Forkhead transcription factor; morphogenesis regulator; required for wild-type hyphal transcription, cell separation, and for virulence in cell culture; mutant lacks true hyphae, is constitutively pseudohyphal; upregulated in RHE model [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	115885	117448	+	ntar_530	115885	117448	1	115885	117448	116832	116993			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	116785	118322	-	orf19.5388	116785	118322	1	118322	116785	118292	116949	SWD1	orf19.12843|IPF21735.1|IPF1055.2|Contig4-2666_0002|orf6.8624|CA5752|CaO19.5388|CaO19.12843|IPF1055	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	118487	122944	+	orf19.5387	118487	122944	1	118487	122944	118538	122578	VPS8	orf19.12842|IPF21788.1|IPF11663.2|Contig4-2666_0003|Contig4-2666_0004|orf6.8623|CA5751|CaO19.5387|CaO19.12842	Protein described as a vacuolar sorting protein; downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	123198	127065	+	orf19.5384	123198	127065	1	123198	127065	123508	126825	CHS8	orf19.12839|IPF21803.1|IPF11660.2|orf6.8620|CA5750|CHS3|CaO19.5384|CaO19.12839|CHS21	Chitin synthase required for synthesis of long-chitin fibrils; nonessential; 8 or 9 membrane spanning regions; mRNA present in yeast and hyphae; induced during cell wall regeneration; fungal-specific (no human or murine homologs) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	126884	127048	-	ntar_531	126884	127048	1	127048	126884					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	127588	127853	+	ntar_532	127588	127853	1	127588	127853					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	129854	130057	-	ntar_533	129854	130057	1	130057	129854					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	130260	130813	-	ntar_534	130260	130813	1	130813	130260	130581	130450			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	132900	136640	+	orf19.5383	132900	136640	1	132900	136640	133121	135808	PMA1	orf19.12838|IPF21692.1|IPF8215.2|Contig4-2974_0020|orf6.4145|CA2300|CaO19.12838|CaO19.5383	Plasma membrane H(+)-ATPase; highly expressed, comprising 20-40% of total plasma membrane protein; abundance increases at stationary phase transition; fluconazole induced; caspofungin repressed; upregulated in RHE model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	137170	140033	+	orf19.5381	137170	140033	1	137170	140033	137633	139984		orf19.12836|IPF19392.2|IPF8222.2|Contig4-2974_0014|orf6.206|orf6.4143|CA2299|CaO19.5381|IPF8222	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	138357	140131	+	orf19.5382	138357	140131	1	138357	140131	138416	139984		IPF8221.1|IPF18491.1|orf6.205|orf6.4144	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	140373	143047	+	orf19.5380	140373	143047	1	140373	143047	140435	143020	LYS144	orf19.12835|IPF21694.1|IPF8224.2|Contig4-2974_0012|orf6.4142|CA2298|CaO19.12835|CaO19.5380|IPF8224	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Lys14p, which is a transcription factor involved in the regulation of lysine biosynthesis genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	143552	145180	+	orf19.5379	143552	145180	1	143552	145180	143573	144982	ERG4	orf19.12834|IPF21722.1|IPF8225.1|Contig4-2974_0009|orf6.4141|CA2297|CaO19.5379|CaO19.12834	Protein described as similar to sterol C-24 reductase; shows Mob2p-dependent hyphal regulation; fluconazole-induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	144934	145992	-	orf19.5378	144934	145992	1	145992	144934	145926	145183	SCL1	orf19.12833|IPF21751.1|IPF8226.2|Contig4-2974_0008|orf6.4140|CA2296|CaO19.5378	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	146194	147669	+	orf19.5377	146194	147669	1	146194	147669	146267	147631	HOS2	orf19.12832|IPF16053.3|IPF21733.1|IPF8228.2|Contig4-2974_0006|orf6.1588|orf6.4139|CA2295|orf19.3067|CaO19.5377	Putative histone deacetylase; genetic evidence suggests that Set3p and Hos2p function together as a complex involved in regulation of white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	147995	150803	+	orf19.5376	147995	150803	1	147995	150803	148266	150701		orf19.12831|IPF16051.2|IPF21697.1|IPF28022.1|Contig4-2974_0004|orf6.1589|orf6.4138|CA0577|orf19.3068|CaO19.5376|CaO19.12831	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	152203	152592	-	ntar_535	152203	152592	1	152592	152203					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	154030	154266	+	ntar_536	154030	154266	1	154030	154266					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	154752	157787	+	orf19.3071	154752	157787	1	154752	157787	155057	157741	MIH1	IPF19027.1|IPF9605.2|Contig4-2784_0008|Contig4-2784_0009|orf6.1170|orf6.1592|CA0578|orf19.1812|CaO19.3071|IPF9605	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to S. cerevisiae Mih1p; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	157862	160841	-	orf19.1288	157862	160841	1	160841	157862	160697	157977	FOX2	IPF19113.1|IPF9601.2|IPF18935.1|Contig4-2784_0005|orf6.882|orf6.1167|CA0347|orf19.3070.1|orf19.1809	Predicted 3-hydroxyacyl-CoA epimerase, required for fatty acid beta-oxidation; upregulated upon phagocytosis; transcription is regulated by Mig1p and by white-opaque switching; transcriptional activation by oleate requires Ctf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	162669	165348	+	orf19.1289	162669	165348	1	162669	165348	162858	165170	SCT1	IPF9596.1|IPF18377.2|Contig4-2784_0001|orf6.883|orf6.5315|CA0214|orf19.6154|CaO19.1289|SCT11	Putative glycerol-3-phosphate O-acyltransferase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	165186	167707	-	orf19.6155	165186	167707	1	167707	165186	167648	165336		CDC9|IPF9796.2|Contig4-2784_0016|orf6.5316|CA3145|CaO19.6155	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	167882	168479	-	orf19.6156	167882	168479	1	168479	167882	168444	167947		IPF9797.2|Contig4-2310_0001|orf6.5317|CA3146|CaO19.6156|IPF9797	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	168663	171428	-	orf19.6160	168663	171428	1	171428	168663	171341	168891		IPF9803.2|Contig4-2310_0003|orf6.5321|CA3147|CaO19.6160|IPF9803	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	172839	173927	+	orf19.6163	172839	173927	1	172839	173927	173054	173689	CSE4	IPF9808.2|Contig4-2276_0004|orf6.5324|CA3148|CaO19.6163|IPF9808	Centromere-associated protein; essential; 4 Cse4p-containing nucleosomes, each containing 2 Cse4p molecules, bind to each centromere; similar to CENP-A (centromeric histone H3 variant) proteins; Cse4p and Mif2p colocalize at centromeres [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	174382	174708	+	orf19.6164	174382	174708	1	174382	174708	174382	174708			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	175231	178601	+	orf19.6165	175231	178601	1	175231	178601	175327	178317	KGD1	IPF19778.1|Contig4-2897_0018|orf6.5326|CA3149|CaO19.6165	Protein described as 2-oxoglutarate dehydrogenase; regulated by Efg1p under yeast-form but not hyphal growth conditions; transcription is upregulated in an RHE model of oral candidiasis; detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	178504	180833	-	orf19.6166	178504	180833	1	180833	178504	180785	178635		IPF4035.1|Contig4-2897_0017|orf6.5327|CA3150|CaO19.6166|IPF4035	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	181011	182090	-	orf19.6167	181011	182090	1	182090	181011	182020	181139	AYR1	IPF4033.2|Contig4-2897_0016|orf6.5328|CA3151|CaO19.6167|IPF4033	Protein described as putative oxidoreductase; transcriptionally induced by interaction with macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	182291	182860	+	ntar_537	182291	182860	1	182291	182860	182560	182682			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	183128	185917	+	orf19.6168	183128	185917	1	183128	185917	183131	185809		IPF4032.2|Contig4-2897_0010|Contig4-2897_0013|orf6.5329|CA3152|CaO19.6168|IPF4032	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	187467	188264	+	orf19.6169	187467	188264	1	187467	188264	187467	188264		IPF4028.2|Contig4-2897_0004|orf6.5330|CA3153|AFF2|CaO19.6169|FRP2	Predicted ORF in Assemblies 19, 20 and 21; induced by Rgt1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	189211	190388	+	orf19.2496	189211	190388	1	189211	190388	189367	190164		orf19.10032|FUN34|IPF24862.1|IPF4026.2|IPF18376.1|Contig4-2897_0002|orf6.6177|CA3813|CA3154|orf19.6169.2|AFF3|CaO19.2496|CaO19.10032|FRP1	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	191061	193051	+	orf19.2498	191061	193051	1	191061	193051	191184	192869		orf19.10034|IPF24833.1|IPF4023.2|Contig4-2897_0001|orf6.6179|CA3814|CaO19.10034|SAN1|CaO19.2498|IPF4023	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	192905	194231	-	orf19.2499	192905	194231	1	194231	192905	194199	193075		orf19.10035|IPF24849.1|IPF4018.2|orf6.6180|CA3815|CPR7|CaO19.2499|CaO19.10035|CYP7	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	194314	195577	+	orf19.2500	194314	195577	1	194314	195577	194339	195481		orf19.10036|IPF24848.1|IPF4017.2|Contig4-2453_0012|orf6.6181|CA3816|CaO19.10036|CaO19.2500|IPF4017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	196084	196154	+	tg(ucc)1	196084	196154	1	196084	196154				tG(UCC)1.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	198258	201218	+	orf19.2501	198258	201218	1	198258	201218	198712	201138	FLC1	orf19.10037|IPF17613.3|IPF4012.2|Contig4-2453_0003|orf6.2324|orf6.6182|CA1039|BOP1|CFP2|CaO19.2501|IPF4012	Protein involved in heme uptake; putative FAD transporter, similar to S. cerevisiae Flc1p; regulated by iron; macrophage-induced gene; mutant shows defect in filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	201350	202606	-	orf19.2503	201350	202606	1	202606	201350	202606	201350		orf19.10039|IPF24842.1|IPF4010.2|Contig4-2453_0001|Contig4-2453_0002|orf6.2326|CA1040|CaO19.2503|CaO19.10039|IPF4010	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	202814	206550	+	orf19.2504	202814	206550	1	202814	206550	202856	206488	BMS1	orf19.10040|IPF24887.1|IPF4009.2|Contig4-2895_0007|orf6.2327|CA1041|CaO19.10040|CaO19.2504	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC); flucytosine induced; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	206590	206898	+	orf19.2505	206590	206898	1	206590	206898	206590	206898		orf19.10041|IPF24893.1|IPF29103.1|orf6.2328|orf6.3910|CaO19.2505|CaO19.10041	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	209594	211739	+	orf19.2506	209594	211739	1	209594	211739	209734	211527		orf19.10042|IPF16841.2|IPF18784.2|Contig4-2657_0017|orf6.2329|orf6.3911|CA1042|CaO19.2506|IPF18784|IPF18784.1	Predicted ORF in Assemblies 19, 20 and 21; opaque-specific transcription; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	209667	209836	-	ntar_538	209667	209836	1	209836	209667					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	211880	213638	+	orf19.2507	211880	213638	1	211880	213638	211942	213396	ARP9	orf19.10043|IPF24839.1|IPF15652.2|Contig4-2657_0015|Contig4-2657_0016|orf6.3912|CA2137|CaO19.10043|CaO19.2507	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Arp3p, which is a component of the Arp2/3 complex involved in actin-dependent processes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	213616	215370	-	orf19.2508	213616	215370	2	215370|214774	214847|213616	215370	213616	PRM9	orf19.10044|IPF24846.1|IPF15653.2|IPF15654.2|Contig4-2657_0014|orf6.3913|orf6.3914|CA2139|CaO19.2508|CaO19.10044|IPF15654|IPF15654.exon1	Protein not essential for viability; similar to S. cerevisiae Prm9p, which may bind to COPII coated vesicles [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	214843	215370	-	orf19.2509	214843	215370	1	215370	214843	215370	214843		orf19.10045|IPF24867.1|IPF15654.2|Contig4-2657_0013|orf6.3914|CA2139|CaO19.10045|CaO19.2509|IPF15654|IPF15654.exon1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	216221	216950	+	orf19.2509.1	216221	216950	1	216221	216950	216501	216710			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	216904	219972	-	orf19.2510	216904	219972	1	219972	216904	219972	216982		orf19.10046|orf19.10047|IPF19665.1|IPF19664.1|IPF29081.1|IPF29083.1|Contig4-2657_0003|Contig4-2657_0004|Contig4-2657_0005|orf6.3915|orf6.3916|CA2140|CA2141|orf19.2511|IPF19665	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	220187	220841	+	orf19.2511.1	220187	220841	1	220187	220841	220281	220571	MRPL33	IPF15872.2|IPF19409.2|Contig4-2657_0002|CA2142	ORF predicted by Annotation Working Group; increased expression observed in an ssr1 homozygous null mutant; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	221403	222323	+	orf19.2511.2	221403	222323	1	221403	222323	221751	221975			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	222745	223728	+	orf19.2512	222745	223728	1	222745	223728	222910	223569		orf19.10048|IPF12803.2|IPF29085.1|Contig4-1978_0003|orf6.3917|CA2143|CaO19.2512|CaO19.10048|IPF12803	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	223649	225820	-	orf19.2513	223649	225820	1	225820	223649	225799	223649		orf19.10049|IPF24827.1|IPF12802.2|Contig4-1978_0004|Contig4-1978_0006|orf6.3918|CA2144|CaO19.2513|CaO19.10049|IPF12802	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr3	225945	227325	+	orf19.2514	225945	227325	1	225945	227325	226037	227098		orf19.10050|IPF24853.1|IPF12800.1|Contig4-2437_0007|orf6.3919|CA2145|CaO19.10050|CaO19.2514|IPF12800	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	227330	230120	-	orf19.2515	227330	230120	1	230120	227330	230085	227431		orf19.10051|IPF24819.1|IPF12799.2|orf6.3920|CA2146|CaO19.10051|CaO19.2515|IPF12799	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	231284	232087	+	orf19.2516	231284	232087	1	231284	232087	231365	232087		orf19.10052|IPF24860.1|IPF18533.1|orf6.3921|CA2147|IPF18533.5eoc|IPF18533	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr3	232356	232917	+	ntar_539	232356	232917	1	232356	232917	232752	232892			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	232639	233900	-	orf19.158	232639	233900	1	233900	232639	233668	232742		Contig4-1515_0003|orf6.136|APD1|CaO19.158|CA0019|IPF17799|IPF17799.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	235158	235455	-	ntar_540	235158	235455	1	235455	235158					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	235239	235569	+	ntar_541	235239	235569	1	235239	235569	235278	235469			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	235776	236229	-	ntar_542	235776	236229	1	236229	235776	236062	235790			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	235898	238970	+	orf19.3153	235898	238970	1	235898	238970	236577	238733	MSS4	orf19.10663|IPF24141.1|IPF15141.2|Contig4-2116_0004|orf6.1660|CA0623|CaO19.3153|MSS4.3f|MSS4.3	Phosphatidylinositol-4-phosphate 5-kinase; activity induced by phosphatidic acid (Pld1p product); macrophage/pseudohyphal-repressed; mRNA binds to She3p and is localized to buds of yeast-form cells and hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	238988	240816	+	orf19.3154	238988	240816	1	238988	240816	239305	240759		orf19.10664|IPF312.3|IPF15139.2|Contig4-2595_0002|orf6.1661|orf6.2694|CA0624|CaO19.3154|IPF312	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	240837	244500	-	orf19.3156	240837	244500	1	244500	240837	244246	240983		orf19.10665|IPF13504.2|IPF310.3|Contig4-2595_0003|Contig4-2595_0004|Contig4-2595_0005|orf6.1663|orf6.2693|CA1270|CaO19.3156|MDS1|IPF13504	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	247708	248027	+	ntar_543	247708	248027	1	247708	248027					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	248099	249793	-	orf19.3158	248099	249793	1	249793	248099	249687	248260		orf19.10667|IPF19726.1|IPF13496.3|Contig4-1635_0002|orf6.2691|orf6.641|CA1269|RMD1|CaO19.3158|IPF19726	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	248132	248798	+	ntar_544	248132	248798	1	248132	248798					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	249979	257674	+	orf19.3159	249979	257674	1	249979	257674	250060	257565	UTP20	orf19.9300|orf19.9301|orf19.10668|IPF25622.1|IPF25609.1|IPF18641.1|IPF18640.1|IPF24144.1|IPF14693.2|orf6.3233|orf6.3232|orf6.2690|YBL004|CA1640|CA1639|CA1268|orf19.1732|orf19.1733|CaO19.10668|CaO19.3159|IPF14693	Protein likely to be essential for growth; similar to S. cerevisiae Utp20p, which is a putative snoRNA-binding protein; downregulated in core stress response; mutation confers resistance to 5-fluorocytosine (5-FC) and parnafungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	257604	258746	-	orf19.1730	257604	258746	2	258746|258537	258612|257604	258651	257642		orf19.9298|orf19.9299|IPF25677.1|IPF25664.1|IPF9350.2|IPF9349.2|orf6.3235|orf6.3234|CA1642|CA1641|orf19.1731|NHP1.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	258865	260950	+	orf19.1729	258865	260950	1	258865	260950	259892	260899		orf19.9297|IPF25625.1|IPF9347.2|Contig4-1881_0001|orf6.3236|CA1643|CaO19.9297|CaO19.1729|IPF9347	Putative transcription factor with zinc finger DNA-binding motif; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	260935	261567	-	orf19.1728	260935	261567	1	261567	260935	261567	260935		orf19.9296|IPF25653.1|IPF9345.1|Contig4-1881_0002|orf6.3237|CA1644|CaO19.9296|CaO19.1728|IPF9345	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	261906	261994	-	tr(ccu)1	261906	261994	2	261994|261941	261959|261906				tR(CCU)1.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	263667	263895	-	ntar_545	263667	263895	1	263895	263667					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	264035	264321	-	ntar_546	264035	264321	1	264321	264035					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	264769	268784	+	orf19.1727	264769	268784	1	264769	268784	264976	268611	PMC1	orf19.9295|IPF25700.1|IPF9340.1|Contig4-2981_0007|orf6.3238|CA1645|CaO19.1727|CaO19.9295	Vacuolar calcium P-type ATPase; transcription is regulated by calcineurin and fluconazole; mutant shows increased resistance to fluconazole or lithium, and increased sensitivity to calcium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	268997	269194	-	ntar_547	268997	269194	1	269194	268997					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	269303	272073	-	orf19.1725	269303	272073	1	272073	269303	271593	269416		orf19.9293|IPF8416.3|IPF9336.3|Contig4-2981_0008|orf6.3240|CA1646|CaO19.1725|IPF9336|IPF9336.3eoc|IPF9336.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	273912	274379	+	orf19.1724	273912	274379	1	273912	274379	273912	274379		orf19.9292|IPF25671.1|IPF8408.1|Contig4-2981_0013|orf6.4836|CA2794|CaO19.9292|CaO19.1724|IPF8408	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	274393	275347	+	orf19.1723	274393	275347	1	274393	275347	274599	275267		orf19.9291|IPF25651.1|IPF8407.1|Contig4-2981_0015|orf6.4837|CA2795|CaO19.9291|CaO19.1723|IPF8407	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	275446	275862	+	orf19.1722	275446	275862	1	275446	275862	275446	275862		orf19.9290|IPF25679.1|IPF29361.1|orf6.4838|CaO19.1722|CaO19.9290	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	275637	276942	-	orf19.1721	275637	276942	1	276942	275637	276550	275705	NCE103	orf19.9289|IPF25642.1|IPF8405.1|Contig4-2981_0017|orf6.4839|CA2796|CaO19.9289|CaO19.1721|IPF8405	Carbonic anhydrase involved in the conversion of carbon dioxide to bicarbonate; essential for pathogenesis in host niches with limited CO2, wild-type white-opaque switching; biofilm induced; activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	277473	280213	+	orf19.1720	277473	280213	1	277473	280213	277547	280141		orf19.9288|IPF25592.1|IPF8404.1|Contig4-2981_0018|orf6.4840|CA2797|CaO19.1720|CaO19.9288|IPF8404	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	280282	282435	-	orf19.1719	280282	282435	1	282435	280282	282178	280484	SGA1	orf19.9287|IPF25618.1|IPF8402.2|Contig4-2981_0019|orf6.4841|CA2798|CaO19.9287|CaO19.1719|IPF8402	Putative glucoamylase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	285283	288369	+	orf19.1718	285283	288369	1	285283	288369	285487	288234		ZCF8|orf19.9286|IPF25589.1|IPF19769.1|orf6.4842|CA2799|CaO19.1718|CaO19.9286|IPF19769	Predicted zinc-finger protein of unknown function; decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	288537	290253	+	orf19.1717	288537	290253	1	288537	290253	288792	290177		orf19.9285|orf6.4843|IPF25627.1|IPF11366.2|Contig4-2578_0002|CA2800|CaO19.1717|CaO19.9285|IPF11366	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	290190	291260	-	orf19.1716	290190	291260	1	291260	290190	291144	290332	URA3	orf19.9284|IPF25647.1|IPF11364.1|Contig4-2578_0003|orf6.4844|CA2801|CaO19.9284|CaO19.1716	Orotidine-5'-phosphate decarboxylase, enzyme of pyrimidine biosynthesis; gene used as a molecular genetic marker, but decreased expression when integrated at ectopic chromosomal locations can cause defects in hyphal growth and virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	291469	293484	-	orf19.1715	291469	293484	1	293484	291469	293370	291580	IRO1	orf19.9283|orf6.4843|IPF11363.1|IPF29338.1|Contig4-2578_0004|Contig4-2578_0006|orf6.4845|CA2802|CaO19.9283|CaO19.1715|IPF11363	Putative transcription factor; role in iron utilization, pathogenesis; both IRO1 and adjacent URA3 are mutated in strain CAI4; suppresses S. cerevisiae aft1 mutant low-iron growth defect; hyphal-induced; reports differ about iron regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	294259	295610	-	orf19.1714	294259	295610	1	295610	294259	295376	294453	PGA44	orf19.9282|IPF25662.1|IPF14081.2|orf6.3113|orf6.4847|orf6.4846|CA1553|CaO19.1714|IPF14081	Putative GPI-anchored protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	296758	300499	-	orf19.1712	296758	300499	1	300499	296758	300272	296889	GEA2	orf19.9279|orf19.9280|orf6.3114|IPF25656.1|IPF25714.1|IPF14074.1|IPF14077.1|Contig4-2180_0007|orf6.3115|CA1555|CA1554|orf19.1713|GEA2.5f	Protein described as an ARF GTP/GDP exchange factor; transcriptionally regulated by iron; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	301391	302734	+	orf19.1711	301391	302734	1	301391	302734	301514	302701	END3	orf19.9278|IPF25635.1|IPF15676.2|orf6.3116|CA1556|CaO19.9278|CaO19.1711	Regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	302703	303891	-	orf19.1710	302703	303891	1	303891	302703	303621	302782		orf19.9277|IPF25643.1|IPF15677.2|Contig4-2424_0009|orf6.3117|CA1557|CaO19.1710|CaO19.9277|IPF15677	Protein described as NADH-ubiquinone oxidoreductase; identified in detergent-resistant membrane fraction (possible lipid raft component); predicted N-terminal acetylation; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	304032	304727	+	ntar_548	304032	304727	1	304032	304727					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	304676	305386	-	orf19.1709	304676	305386	1	305386	304676	305176	304793		orf19.9276|IPF25694.1|IPF15679.2|Contig4-2424_0007|orf6.3118|CA1558|CaO19.1709|POX181|CaO19.9276|IPF15679	Predicted ORF in Assemblies 19, 20 and 21; alkaline downregulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	306698	307756	+	orf19.1708	306698	307756	1	306698	307756	306822	307481		orf19.9275|IPF25649.1|IPF16533.2|Contig4-2424_0002|orf6.3119|CA1559|CaO19.9275|CaO19.1708|IPF16533	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	307468	307957	-	orf19.1707	307468	307957	1	307957	307468	307957	307640		orf19.9274|IPF25708.1|IPF16535.2|Contig4-2424_0001|orf6.3120|CaO19.1707|CaO19.9274	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	307973	311242	-	orf19.1706	307973	311242	1	311242	307973	311242	307973	MET18	orf19.9273|IPF25707.1|IPF16088.2|Contig4-2424_0011|orf6.3121|CA1560|CaO19.1706|CaO19.9273	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	311312	311516	+	ntar_549	311312	311516	1	311312	311516					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	311480	312988	-	orf19.1704	311480	312988	1	312988	311480	312779	311547	FOX3	orf19.9271|IPF17552.3|IPF16087.1|POT1-1|Contig4-2869_0003|orf6.3123|CA1561|POT2|CaO19.9271|CaO19.1704|POT12|CA1505|POT1|IPF17552.2	Putative peroxisomal 3-oxoacyl CoA thiolase; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	313769	314526	+	ntar_550	313769	314526	1	313769	314526	314109	314267			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	314540	314705	-	ntar_551	314540	314705	1	314705	314540					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	314798	316003	+	orf19.1702	314798	316003	2	314798|315301	315187|316003	315173	315813	ARF3	orf19.9269|IPF25666.1|IPF13664.2|Contig4-2869_0006|orf6.3043|CA1504|CaO19.1702|CaO19.9269	Transcription is filament induced; Tup1p regulated (see Locus History Note for Assembly 19 correction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	315925	317060	-	orf19.1701	315925	317060	1	317060	315925	316838	316047	RKI1	orf19.9268|IPF13663.2|IPF29351.1|Contig4-2869_0008|orf6.3042|CA1503|CaO19.9268|CaO19.1701	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	317350	318197	+	orf19.1700	317350	318197	1	317350	318197	317436	317996	RPS7A	orf19.9267|IPF13662.1|IPF29352.1|Contig4-2869_0009|orf6.3041|CA1502|CaO19.1700|RPS7	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	318153	320256	-	orf19.1699	318153	320256	1	320256	318153	320137	318275	BZZ1	orf19.9266|IPF25611.1|IPF13661.3|Contig4-2869_0011|orf6.3040|orf6.374|CA0060|CaO19.1699|IPF13661|IPF13661.2	Protein similar to S. cerevisiae Bzz1p, which is an SH3 domain protein involved in the regulation of actin polymerization [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	320416	322953	+	orf19.1698	320416	322953	1	320416	322953	320920	322818		orf19.9265|IPF13217.2|IPF13660.3|Contig4-2869_0012|orf6.3039|orf6.375|CA1501|CaO19.1698|IPF13217	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	322810	324061	-	orf19.1697	322810	324061	1	324061	322810	324006	322945		orf19.9264|IPF25640.1|IPF13221.2|Contig4-2869_0013|orf6.3038|CA1500|CaO19.9264|CaO19.1697|IPF13221	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	324236	332768	-	orf19.1693	324236	332768	1	332768	324236	332768	324276	CAS4	orf19.9261|IPF25646.1|IPF29342.1|IPF6521.3|Contig4-2861_0008|Contig4-2861_0009|Contig4-2861_0010|Contig4-2869_0015|orf6.3035|orf6.4146|CA2301|CA6262|orf19.1694|TAO3|PAG1|TAO3.5f	Protein of RAM cell wall integrity signaling network; role in cell separation, azole sensitivity; required for hyphal growth; insertion mutation near 3' end of gene causes increase in caspofungin sensitivity; pheromone/hyphal induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	333015	333238	+	ntar_552	333015	333238	1	333015	333238	333015	333173			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	333609	333857	-	ntar_553	333609	333857	1	333857	333609					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	335658	336659	+	orf19.1691	335658	336659	1	335658	336659	335873	336460		orf19.9259|IPF19200.1|IPF6518.1|Contig4-2909_0014|orf6.4148|orf6.653|CA2302|CaO19.9259|CaO19.1691|IPF6518	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-induced; filament induced; Hog1p-induced; regulated by Nrg1p, Tup1p; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	336642	338572	-	orf19.1690	336642	338572	1	338572	336642	338325	336919	TOS1	orf19.9258|IPF25628.1|IPF6517.2|Contig4-2909_0012|orf6.4149|CA2303|CaO19.1690	Protein described as similar to alpha agglutinin anchor subunit; exogenously expressed protein is a substrate for Kex2p processing in vitro; fluconazole-induced; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	342606	345175	+	orf19.1687	342606	345175	1	342606	345175	342685	344988		orf19.9255|IPF25600.1|IPF6512.1|Contig4-2909_0003|orf6.4152|CA2304|CaO19.9255|PRP43|CaO19.1687	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	345387	347222	+	orf19.1686	345387	347222	1	345387	347222	345434	347143		orf19.9254|IPF25619.1|IPF6511.1|Contig4-2909_0002|orf6.4153|CA2305|MPA43|CaO19.9254|CaO19.1686	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	347644	349205	+	orf19.1685	347644	349205	1	347644	349205	347789	349138		ZCF7|IPF6510.2|orf6.4154|CA2306|CaO19.1685|IPF6510	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	349227	351284	+	orf19.1684	349227	351284	1	349227	351284	349260	350942		orf19.9253|IPF11676.2|IPF29339.1|Contig4-2363_0007|orf6.4155|orf6.1329|CA2307|CaO19.1684|IPF18488|IPF18488.5eoc|IPF18488.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	351680	353158	+	orf19.1683	351680	353158	1	351680	353158	351846	352928	PPH21	orf19.9252|IPF11679.2|IPF11680.3|Contig4-2363_0004|orf6.1330|orf6.890|CA0425|CaO19.1683	Putative protein phosphatase of the Type 2A-related family (serine/threonine-specific), similar to S. cerevisiae Pph21p; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	353043	353273	-	ntar_554	353043	353273	1	353273	353043					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	353526	354849	+	orf19.1682	353526	354849	1	353526	354849	353615	354775		orf19.9251|IPF25637.1|IPF11681.2|Contig4-2363_0002|orf6.889|CA0216|CaO19.1682|CaO19.9251|IPF11681	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	354991	355619	+	orf19.1681	354991	355619	1	354991	355619	355042	355602		orf19.9250|IPF25657.1|IPF11682.3|Contig4-2363_0001|Contig4-2527_0013|orf6.2003|orf6.888|CA0839|CaO19.1681|IPF12492|IPF12492.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	355873	358169	+	orf19.1680	355873	358169	2	355873|356066	355988|358169	355986	357916		orf19.9249|IPF12493.1|IPF29347.1|IPF29353.1|Contig4-2527_0012|orf6.2002|CA0838|TFP1|TFP1.5f|orf19.1679.2	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	358214	359143	-	orf19.1679	358214	359143	1	359143	358214	359143	358214		orf19.9248|IPF12495.1|IPF29348.1|Contig4-2527_0011|orf6.2001|CA0836|CaO19.1679|IPF12495|CA0837|IPF12495.3f|IPF12494.1|IPF12495.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	359970	360570	+	orf19.1678	359970	360570	1	359970	360570	360220	360570		orf19.9247|Contig4-2527_0008|orf6.2000|CaO19.9247|CaO19.1678	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	360020	362392	-	ntar_555	360020	362392	1	362392	360020					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	360649	361602	+	orf19.1677	360649	361602	1	360649	361602	360649	361446		orf19.9246|IPF25645.1|IPF12499.2|Contig4-2527_0007|orf6.1999|CA0834|CaO19.9246|CaO19.1677|IPF12498.3f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	362653	364078	-	orf19.1676	362653	364078	1	364078	362653	363851	362745		orf19.9245|IPF12502.2|IPF12501.2|IPF29330.1|IPF29350.1|Contig4-2527_0003|Contig4-2527_0005|orf6.1998|CA0833|IPF12501	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	362801	363873	+	ntar_556	362801	363873	1	362801	363873					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	365050	366730	+	orf19.1675	365050	366730	1	365050	366730	365360	366562		orf19.9244|IPF14225.2|IPF29346.1|Contig4-2335_0007|orf6.1997|CA0832|CaO19.1675|CaO19.9244|IPF14225	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	366580	366890	-	ntar_557	366580	366890	1	366890	366580	366738	366580			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	367126	369811	+	orf19.1674	367126	369811	1	367126	369811	367387	369645	CDC53	orf19.9243|IPF25604.1|IPF14223.1|Contig4-2335_0001|orf6.1083|CA0297|CaO19.1674|CaO19.9243	Cullin, a scaffold subunit of the SCF ubiquitin-ligase complexes; depletion leads to increased filamentous growth and premature cell death [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	369744	371795	-	orf19.1673	369744	371795	1	371795	369744	371639	369945	PPT1	orf19.9242|orf6.1084|IPF25613.1|IPF14222.3|Contig4-2335_0002|CA0298|CaO19.1673|IPF14222.2	Protein described as serine/threonine phosphatase; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	372104	376003	-	orf19.1672	372104	376003	1	376003	372104	375911	372246		orf19.9241|IPF8079.2|IPF29375.1|Contig4-3069_0031|orf6.1640|CA0606|COP1|CaO19.1672	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	376362	378084	-	orf19.1671	376362	378084	1	378084	376362	377817	376405	UTR2	orf19.9240|orf6.1639|IPF8080.2|IPF29345.1|Contig4-3069_0027|CA0605|CSF4|CaO19.9240|CaO19.1671	GPI anchored cell wall putative glycosidase; role in adhesion; required for hyphal growth on Spider (not serum) medium; chitin-binding, glycosyl hydrolase domains; induced during cell wall regeneration; mRNA detected in yeast-form cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	379539	380234	-	ntar_558	379539	380234	1	380234	379539					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	381965	384940	-	orf19.1670	381965	384940	1	384940	381965	384874	382037	BRO1	orf19.9239|IPF25590.1|IPF8087.2|Contig4-3069_0020|orf6.5745|CA3475|CaO19.9239|CaO19.1670	Protein involved in transport from multivesicular body to vacuole; similar to S. cerevisiae Bro1p, which is a class E vacuolar protein sorting (VPS) factor; not involved in RIM101 pathway; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	385588	388252	+	orf19.1669	385588	388252	1	385588	388252	385664	388051	AFG3	orf19.9238|IPF25597.1|IPF8090.2|Contig4-3069_0019|orf6.5744|CA3474|CaO19.9238|CaO19.1669	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Afg3p, which is a subunit of the mitochondrial inner membrane m-AAA protease [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	388123	390117	-	orf19.1668	388123	390117	1	390117	388123	390091	388220		orf19.9237|IPF25608.1|IPF6305.2|Contig4-3069_0018|orf6.5743|CA3473|CaO19.1668|CaO19.9237|IPF6305|IPF6305.exon1	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	390175	390687	-	orf19.1667.1	390175	390687	1	390687	390175	390580	390314		IPF25704.1|IPF6306.1|Contig4-3069_0016|CA3472|IPF6306|IPF6305.exon2	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	390690	394545	-	orf19.1667	390690	394545	1	394545	390690	394545	390793		orf19.9236|IPF25699.1|IPF6308.2|Contig4-3069_0013|Contig4-3069_0015|orf6.5742|CA3471|CaO19.9236|CaO19.1667|IPF6308	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	395033	397351	-	orf19.1666	395033	397351	1	397351	395033	396749	395154		orf19.9235|IPF25623.1|IPF6310.1|Contig4-3069_0012|orf6.5741|CA3470|CaO19.1666|CaO19.9235|IPF6310	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	398727	401199	-	orf19.1665	398727	401199	1	401199	398727	400423	399128	MNT1	orf19.9234|KTR1|IPF25633.1|IPF6315.2|Contig4-3069_0008|Contig4-3069_0009|orf6.5740|CA3469|CaO19.9234|CaO19.1665	Alpha-1,2-mannosyl transferase; adds second mannose during cell-wall mannoprotein biosynthesis; required for wild-type virulence and adherence to epithelial cells; predicted type II membrane protein of Golgi; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	402538	405155	+	orf19.1664	402538	405155	1	402538	405155	402555	405155		orf19.9233|IPF25593.1|IPF6318.2|Contig4-3069_0005|orf6.5739|CA3468|CaO19.9233|BGL98|CaO19.1664|IPF6318	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr3	405140	407180	-	orf19.1663	405140	407180	1	407180	405140	406706	405321	MNT2	orf19.9232|IPF25631.1|IPF6319.2|Contig4-3069_0003|orf6.5738|KRE2|CA3467|CaO19.9232|CaO19.1663	Alpha-1,2-mannosyl transferase; adds third mannose during cell-wall mannoprotein biosynthesis; partially redundant with Mnt1p; role in adherence and virulence; expressed in yeast-form and hyphal cells; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	408051	408124	-	tv(aac)2	408051	408124	1	408124	408051				tV(AAC)2.2	tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	408998	410212	+	orf19.1662	408998	410212	1	408998	410212	409039	410094		orf19.9231|IPF25644.1|IPF12526.2|Contig4-2479_0010|orf6.5737|CA3466|CaO19.9231|MRP1|CaO19.1662|MRP1.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	410189	412017	-	orf19.1661	410189	412017	1	412017	410189	411950	410328	DBP5	orf19.9230|IPF25616.1|IPF12528.2|Contig4-2479_0009|orf6.5736|CA3464|CaO19.9230|CaO19.1661	Protein described as RNA helicase; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	412146	412220	-	tk(uuu)1	412146	412220	1	412220	412146				tK(UUU)1.2	tRNA-Lys predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	412538	414587	+	orf19.1659	412538	414587	1	412538	414587	412614	414377	ALG8	orf19.9228|IPF25617.1|IPF12530.2|Contig4-2479_0006|orf6.5734|CA3463|CaO19.1659	Putative glucosyltransferase involved in cell wall mannan biosynthesis; transcription is elevated in nik1 and sln1 homozygous null mutants, but not in the chk1 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	414493	416815	-	orf19.1658	414493	416815	2	416815|415793	416350|414493	416642	414755		orf19.9226|orf19.9227|IPF19685.1|IPF29349.1|Contig4-1784_0004|Contig4-2479_0002|Contig4-2479_0003|orf6.833|orf6.834|CA0198|orf19.1657|IPF19685	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	418369	420327	-	orf19.1656	418369	420327	1	420327	418369	420268	418472		orf19.9225|IPF25614.1|IPF13675.2|Contig4-2722_0003|orf6.1219|CA0369|CaO19.9225|CaO19.1656|IPF13675	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	422298	422987	-	orf19.1655.3	422298	422987	1	422987	422298	422878	422711		IPF18656.2|IPF13678.2|Contig4-1759_0003|CA0370|IPF13678	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	423245	423446	+	ntar_559	423245	423446	1	423245	423446					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	423775	423889	-	ty(gua)2	423775	423889	2	423889|423810	423853|423775				tY(GUA)2.2	tRNA-Tyr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	425276	427659	+	orf19.1655	425276	427659	1	425276	427659	425332	427506	PXP2	orf19.9224|IPF25599.1|IPF13474.2|POX1-1|Contig4-2710_0004|orf6.3140|CA1574|CaO19.1655|POX102|CaO19.9224	Putative acyl-CoA oxidase; enzyme of fatty acid beta-oxidation; induced during macrophage infection; expression is opaque specific; has putative peroxisome targeting signal [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	427558	428290	-	orf19.1654	427558	428290	1	428290	427558	428219	427632		orf19.9223|IPF25652.1|IPF20085.1|Contig4-2710_0007|orf6.3139|CaO19.1654|CaO19.9223	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	428373	429291	-	orf19.1653	428373	429291	1	429291	428373	429148	428558		orf19.9222|IPF25655.1|IPF15087.2|Contig4-2710_0009|orf6.3138|CA1573|CaO19.1653|CaO19.9222|IPF15087	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	428560	428782	+	ntar_560	428560	428782	1	428560	428782					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	429396	429923	+	ntar_561	429396	429923	1	429396	429923					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	429439	431893	-	orf19.1652	429439	431893	1	431893	429439	431734	429605	POX1-3	orf19.9221|IPF15088.2|IPF15794.2|POX1|POX99|Contig4-2710_0011|Contig4-2710_0012|orf6.3137|orf6.828|CA1572|POX4|POX104|CaO19.1652	Predicted acyl-CoA oxidase; farnesol regulated; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	433092	434981	-	orf19.1651	433092	434981	1	434981	433092	434322	433795		orf19.9220|IPF25661.1|IPF15799.1|Contig4-1923_0003|orf6.827|CA0196|CaO19.9220|CaO19.1651|IPF15799	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	434378	435802	+	ntar_562	434378	435802	1	434378	435802	434688	434834			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	435563	436165	-	orf19.1650	435563	436165	1	436165	435563	436145	435840		orf19.9219|IPF15801.2|IPF19134.2|Contig4-1923_0001|orf6.2330|orf6.826|CA1043|CaO19.1650|TOM6	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	436164	437541	+	orf19.1649	436164	437541	1	436164	437541	436241	437485	RNA1	orf19.9218|IPF11621.2|IPF15802.3|orf6.2331|orf6.825|CA1044|CaO19.1649	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	437607	441742	+	orf19.1648	437607	441742	1	437607	441742	437607	441605	RAD50	orf19.9217|IPF25689.1|IPF11620.2|orf6.2332|CA1045|CaO19.9217|CaO19.1648|IPF11620	Protein described as DNA double-strand break repair factor; involved in response to oxidative stress and drug resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	441625	442732	-	orf19.1647	441625	442732	2	442732|442416	442499|441625	442732	441625		orf19.9216|IPF25648.1|IPF11617.2|Contig4-2368_0002|orf6.2333|CA1046|CaO19.9216|CaO19.1647|IPF11617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	442914	445602	+	orf19.1646	442914	445602	1	442914	445602	442966	445503		orf19.9215|IPF11615.2|IPF29332.1|Contig4-2368_0004|orf6.2334|CA1047|MRD1|CaO19.1646|IPF11615|CA3995|IPF11615.3eoc|IPF10438.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	445660	446838	+	orf19.1643	445660	446838	1	445660	446838	445678	446661		orf19.9211|IPF25663.1|IPF10440.2|Contig4-2347_0004|orf6.2338|orf6.6429|CA3996|CaO19.1643|PCP1|IPF10440|IPF10440.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	446661	447479	-	orf19.1642	446661	447479	1	447479	446661	447344	446724		orf19.9209|IPF25650.1|IPF10442.1|Contig4-2347_0006|orf6.6430|CA3997|CaO19.1642|LOC1|CaO19.9209	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	447623	447716	-	te(uuc)2	447623	447716	2	447716|447657	447680|447623				tE(UUC)2.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	448248	449519	+	orf19.1641	448248	449519	1	448248	449519	448248	449519		orf19.9208|IPF19209.2|IPF10443.2|Contig4-2347_0008|orf6.623|orf6.6431|CA3998|CaO19.1641|FAP99|IPF10443	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr3	449569	450735	-	orf19.1639	449569	450735	1	450735	449569	450735	449569		orf19.9207|IPF10444.2|IPF18268.1|IPF15933.2|Contig4-2347_0009|orf6.624|orf6.6432|orf6.6433|CA0136|CA6260|orf19.1640|IFH1|IFH1.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	451463	454178	+	orf19.1638	451463	454178	1	451463	454178	451512	454097		orf19.9206|IPF10446.3|IPF29331.1|Contig4-2997_0003|Contig4-2997_0005|orf6.625|orf6.6434|CA0137|SEC232|CaO19.1638|SEC233|IPF10446.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	454004	455112	-	orf19.1637	454004	455112	1	455112	454004	455047	454106		orf19.9205|IPF25641.1|IPF10447.2|Contig4-2997_0006|orf6.6435|CA3999|CaO19.1637|IPF10447	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	455988	457597	+	orf19.1636	455988	457597	1	455988	457597	456168	457550	STE50	orf19.9204|IPF25630.1|IPF4262.2|Contig4-2997_0011|orf6.6436|CA4000|CaO19.9204|CaO19.1636|IPF4262	Protein with sterile alpha motif (SAM) and Ras-associated domain (RAD); similar to S. cerevisiae Rad50p, which is involved in signal transduction via interaction with and regulation of MAPKKK [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	456454	457560	-	ntar_563	456454	457560	1	457560	456454	456901	456764			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	457816	458929	+	orf19.1635	457816	458929	1	457816	458929	457878	458375	RPL12	orf19.9203|IPF25668.1|IPF4260.2|RPL15B|Contig4-2997_0012|orf6.6437|CA4001|CaO19.9203|CaO19.1635	Predicted ribosomal protein; downregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; genes encoding cytoplasmic ribosomal subunits are downregulated upon phagocytosis by murine macrophage; Tbf1p-activated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	459069	460704	+	orf19.1634	459069	460704	2	459069|459472	459401|460704	459386	460586		orf19.9202|IPF25639.1|IPF4258.2|Contig4-2997_0015|orf6.6438|CA4002|IPF4258	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	460896	463271	+	orf19.1633	460896	463271	1	460896	463271	460975	463206	UTP4	orf19.9201|IPF25598.1|IPF4257.2|Contig4-2997_0017|orf6.6439|CA4003|CaO19.9201|CaO19.1633|IPF4257	Predicted ORF in Assemblies 19, 20 and 21; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	463213	464758	-	orf19.1632	463213	464758	1	464758	463213	464495	463278		orf19.9200|IPF25634.1|IPF4256.2|Contig4-2997_0018|orf6.6440|CA4004|CaO19.1632|CaO19.9200|IPF4256	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	464890	466371	-	orf19.1631	464890	466371	1	466371	464890	466246	465116	ERG6	orf19.9199|IPF25638.1|IPF4255.2|Contig4-2997_0019|orf6.6441|CA4005|CaO19.9199|CaO19.1631	Delta(24)-sterol C-methyltransferase, converts zymosterol to fecosterol in ergosterol biosynthesis by methylating position C-24; mutation confers nystatin resistance; fluconazole-induced; transcription increased in azole-resistant strain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	467156	469919	-	orf19.1630	467156	469919	3	469919|469557|469422	469710|469513|467156	469713	467189		orf19.9198|IPF25601.1|IPF4253.1|Contig4-2997_0020|orf6.6442|CA4006|IPF4253	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	470339	472130	-	orf19.1628	470339	472130	1	472130	470339	472087	470534	LAP41	orf19.9196|IPF25621.1|IPF4250.1|Contig4-2997_0024|orf6.6444|CA4007|CaO19.9196|LAP4|CaO19.1628	Protein not essential for viability; similar to S. cerevisiae Lap4p, which is a vacuolar aminopeptidase; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	472242	473562	-	orf19.1626	472242	473562	1	473562	472242	473525	472386		orf19.9194|IPF25636.1|IPF4248.2|Contig4-2997_0025|orf6.6446|CA4008|CaO19.1626|DYS1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	473716	474552	-	orf19.1625	473716	474552	1	474552	473716	474401	473979		orf19.9193|IPF25669.1|IPF4247.1|Contig4-2997_0026|orf6.6447|CA4009|CaO19.1625|IPF4247	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	474576	475550	+	orf19.1624.1	474576	475550	1	474576	475550	474686	474862			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	474772	477473	-	orf19.1624	474772	477473	2	477473|477291	477372|474772	477390	474905		orf19.9192|IPF17282.3|IPF4245.2|orf6.6448|orf6.786|CA4010|MAK10.3f|MAK10.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	478729	480673	+	orf19.1623	478729	480673	1	478729	480673	479016	480515	CAP1	orf19.9191|IPF4242.2|IPF29344.1|Contig4-2798_0003|orf6.6449|orf6.787|CA0183|CaO19.1623	Transcription factor, AP-1 family; role in oxidative stress response and resistance, multidrug resistance; oxidative stress regulates nuclear localization; partially complements S. cerevisiae yap1 mutation; human neutrophil-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	480614	484643	-	orf19.1622	480614	484643	1	484643	480614	484531	480752	YCG1	orf19.9190|IPF25696.1|IPF4240.2|Contig4-2798_0005|orf6.6450|orf6.788|CA4011|CaO19.1622|IPF4240	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	484819	486846	-	orf19.1621	484819	486846	1	486846	484819	486481	484973	GPA2	orf19.9189|IPF25624.1|IPF4239.2|Contig4-2798_0009|orf6.6451|CA4012|CAG99|CaO19.9189|CaO19.1621	G-protein alpha subunit; regulates filamentous growth; reports differ on a role in cAMP-mediated glucose signaling, cAMP-PKA pathway, MAP kinase cascade; Gpr1p C terminus binds Gpa2p; regulates HWP1 and ECE1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	488508	488996	-	orf19.1620	488508	488996	1	488996	488508	488996	488508		orf19.9188|IPF25665.1|IPF4234.2|Contig4-2798_0014|orf6.6452|CA4013|CaO19.9188|CaO19.1620|IPF4234	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	489036	491018	-	orf19.1619	489036	491018	1	491018	489036	490945	489185		orf19.9187|IPF25612.1|IPF4233.2|Contig4-2798_0016|orf6.6453|CA4014|CTK1|CaO19.1619|CaO19.9187	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	491325	491639	-	ntar_564	491325	491639	1	491639	491325					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	492256	493049	+	orf19.1618.1	492256	493049	1	492256	493049	492585	492809			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	493070	495775	-	orf19.1618	493070	495775	1	495775	493070	495614	493473	GFA1	orf19.9186|IPF17771.2|IPF12267.2|Contig4-2597_0003|orf6.1027|orf6.6454|CA4016|CaO19.1618	Glucosamine-6-phosphate synthase; enzyme of chitin/hexosamine biosynthesis; homotetrameric; inhibited by UDP-GlcNAc, FMDP, N-acyl peptide, kanosamine-6-P; functional homolog of S. cerevisiae Gfa1p; growth-phase regulated; catalytic Cys [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	497338	498959	+	orf19.1617	497338	498959	1	497338	498959	497491	498663		orf19.9184|IPF12263.2|IPF17776.2|Contig4-2597_0008|orf6.1029|orf6.6455|YDR282C|CA6191|CaO19.1617|IPF17776	Protein similar to S. cerevisiae Ydr282cp; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	498964	502918	+	orf19.1616	498964	502918	1	498964	502918	499574	502918	FGR23	orf19.9183|PGA40|IPF12262.3|IPF12624.3|Contig4-2400_0003|orf6.1089|orf6.555|CA0267|orf6.1030|CaO19.1616|IPF12262|IPF12262.2	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; transcriptionally repressed by A1p and Alpha2p in white-phase cells, a-specific and induced by alpha factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr3	503135	503265	-	ntar_565	503135	503265	1	503265	503135					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	504601	506480	+	orf19.1614	504601	506480	1	504601	506480	504793	506400	MEP1	orf19.9181|MEP3|IPF12620.1|IPF18990.2|Contig4-2400_0002|orf6.1090|orf6.1335|CA0302|CaO19.1614	Ammonium permease; Mep1p is a more efficient ammonium permease than Mep2p, whereas Mep2p has additional regulatory role; not essential for viability; 11 predicted transmembrane regions; low mRNA abundance; hyphal downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	507107	509506	+	orf19.1613	507107	509506	1	507107	509506	507204	509255	ILV2	orf19.9180|IPF12617.3|IPF14829.2|orf6.1091|orf6.1336|CA0428|CaO19.1613	Protein described as acetolactate synthase; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	509506	510777	-	orf19.1611	509506	510777	1	510777	509506	510706	509774		orf19.9179|IPF18870.2|IPF14827.2|orf6.1338|orf6.1937|CA0429|CaO19.1611|IPF14827	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	509610	509818	+	ntar_566	509610	509818	1	509610	509818					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	510096	510464	+	ntar_567	510096	510464	1	510096	510464	510096	510464			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	511380	512739	+	orf19.1610	511380	512739	1	511380	512739	511401	512549		orf19.9178|IPF13567.2|IPF14825.1|orf6.1339|orf6.1936|CA0799|CaO19.1610|IPF14825	Putative protein of unknown function, transcription is activated in the presence of elevated CO2; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	512816	514970	+	orf19.1609	512816	514970	1	512816	514970	512849	514849		orf19.9177|IPF13565.2|IPF19865.2|Contig4-1822_0002|Contig4-1822_0003|orf6.1340|orf6.1935|CA0798|KRI1|CaO19.1609|IPF13565	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	514895	516765	-	orf19.1608	514895	516765	1	516765	514895	516765	514999		orf19.9176|IPF25615.1|IPF13564.2|Contig4-1822_0006|orf6.1934|CA0797|CaO19.1608|AYS1|CaO19.9176|IPF13564	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	517527	521066	-	orf19.1607	517527	521066	1	521066	517527	520518	517729	ALR1	orf19.9175|IPF13562.2|IPF14418.3|Contig4-2034_0002|Contig4-2034_0003|Contig4-2034_0004|Contig4-2260_0010|orf6.1088|orf6.1933|CA0796|CaO19.1607	Putative transporter of divalent cations; hyphal-induced expression; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	521229	521679	+	ntar_568	521229	521679	1	521229	521679	521458	521679			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	524072	526065	+	orf19.1606	524072	526065	1	524072	526065	524221	525846		orf19.9174|IPF19678.2|IPF19688.1|Contig4-2260_0002|orf6.1087|CA0301|CaO19.1606|IPF19688	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	525976	526855	-	orf19.227	525976	526855	1	526855	525976	526855	526526	COX7	orf19.7857|IPF27081.1|IPF15250.2|Contig4-2074_0001|orf6.215|CA0031|CaO19.227|CaO19.7857	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	527079	528909	-	orf19.229	527079	528909	2	528909|528437	528719|527079	528760	527187		orf19.7859|IPF27020.1|IPF15248.2|Contig4-2074_0003|orf6.217|CA0032|CaO19.229|CaO19.7859|IPF15248	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	527409	527945	+	ntar_569	527409	527945	1	527409	527945	527613	527945			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	527613	528090	+	ntar_570	527613	528090	1	527613	528090	527613	527945			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	528670	528820	+	ntar_571	528670	528820	1	528670	528820					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	529176	531895	-	orf19.230	529176	531895	1	531895	529176	531895	529253		orf19.7860|IPF26959.1|IPF15244.3|Contig4-2074_0005|Contig4-2074_0006|orf6.1121|orf6.1122|orf6.218|CA0320|CaO19.230|IPF15244.5f|CA0319|IPF15244.3f|IPF19858.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	532592	535177	+	orf19.231	532592	535177	1	532592	535177	532714	535038	APL2	orf19.7861|IPF15242.2|IPF29874.1|Contig4-2074_0008|orf6.1123|orf6.518|CA0321|CaO19.231	Phosphorylated protein of unknown function; mutation confers hypersensitivity to toxic ergosterol analog; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	534980	536208	-	orf19.232	534980	536208	1	536208	534980	536063	535149		orf19.7862|IPF19038.2|IPF10105.2|Contig4-2868_0002|Contig4-2868_0003|orf6.1124|orf6.519|CA0101|CaO19.232|MED7|IPF10105	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	536292	537194	+	orf19.233.1	536292	537194	2	536292|536626	536551|537194	536518	536963	HRT1	IPF19089.2|IPF10102.1|Contig4-2868_0004|Contig4-2868_0005|CA6169|IPF10102	Protein similar to S. cerevisiae Hrt1p, which is a component of a nuclear ubiquitin-protein ligase complex involved in cell cycle control; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	537086	538355	-	orf19.234	537086	538355	2	538355|538101	538180|537086	538230	537223	PHA2	orf19.7864|IPF10101.2|IPF19241.1|PHA2.3|Contig4-2868_0006|orf6.953|orf6.521|CA0238	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	538530	539545	-	orf19.236	538530	539545	1	539545	538530	539506	538931	RPL9B	orf19.7866|IPF27046.1|IPF10099.1|Contig4-2868_0008|orf6.955|CA0239|RPL9|CaO19.236|CaO19.7866	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	539874	541299	-	orf19.238	539874	541299	1	541299	539874	541085	539985	CCP1	orf19.7868|orf6.957|orf6.2684|IPF10098.1|IPF18721.2|Contig4-2868_0011|CA6170|CaO19.238	Similar to cytochrome-c peroxidase N terminus; transcription is negatively regulated by Rim101p or alkaline pH; transcription induced by interaction with macrophage or low iron; oxygen-induced activity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	541971	546608	-	orf19.239	541971	546608	1	546608	541971	546181	542270		orf19.7869|IPF27079.1|IPF10096.2|Contig4-2868_0013|orf6.2685|CA1264|STH1|CaO19.7869|CaO19.239	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	547167	548207	+	orf19.240	547167	548207	1	547167	548207	547229	547879		orf19.7870|IPF27040.1|IPF10510.2|Contig4-2868_0015|orf6.2686|CA1265|FMP16|CaO19.7870|CaO19.240|IPF10510	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	548180	549629	-	orf19.242	548180	549629	1	549629	548180	549453	548236	SAP8	orf19.7872|IPF27022.1|IPF10508.1|Contig4-2868_0016|orf6.2688|CA1266|CaO19.7872|CaO19.242	Secreted aspartyl proteinase; regulated by growth phase, temperature, and white-opaque switch; highly expressed in opaque cells; expressed upon deep epidermal invasion; greater expression during vaginal infection than oral infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	551093	551164	+	tm(cau)1	551093	551164	1	551093	551164				tM(CAU)1.2	tRNA-Met predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	551191	552198	+	orf19.242.2	551191	552198	1	551191	552198	551644	551832		IPF10503.2|CA1267|YSY6	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	551879	553489	-	orf19.243	551879	553489	1	553489	551879	553435	552398	OXR1	orf19.7873|IPF10502.1|IPF18720.2|Contig4-2680_0004|orf6.1270|orf6.2689|CA6171|CaO19.243	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	553641	554480	-	orf19.244	553641	554480	1	554480	553641	554476	553778	DCG1	orf19.7874|IPF27037.1|IPF10499.2|Contig4-2680_0006|orf6.1271|CA0390|CaO19.244|CaO19.7874	Transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	554655	556529	+	orf19.245	554655	556529	1	554655	556529	554671	556137	DDC1	orf19.7875|IPF10496.2|IPF17370.2|Contig4-2680_0007|Contig4-2680_0008|orf6.1272|orf6.602|CA0391|CaO19.245	Transcription is induced during filamentous growth; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	556671	558902	+	orf19.246	556671	558902	1	556671	558902	556671	558902		orf19.7877|IPF17369.3|IPF10495.2|Contig4-2680_0011|orf6.1273|orf6.1996|orf6.601|CA0129|CaO19.246|IPF10495	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	558224	559741	-	orf19.247	558224	559741	1	559741	558224	559630	558899		orf19.7878|IPF14701.2|IPF10493.3|Contig4-2680_0012|orf6.1995|orf6.600|CA0831|CaO19.247|IPF10493|IPF10493.5eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	559738	563407	+	orf19.248	559738	563407	1	559738	563407	559914	563213	APL5	orf19.7879|IPF14699.2|IPF29913.1|Contig4-1809_0004|orf6.1994|CA0830|CaO19.248|CaO19.7879	Phosphorylated protein, not essential for viability; similar to S. cerevisiae Apl5p, which is a subunit of the AP-3 adaptor complex involved in Golgi-to-vacuole transport [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	563233	564569	-	orf19.250	563233	564569	1	564569	563233	564304	563423	SLC1	orf19.7881|IPF27028.1|IPF19886.1|Contig4-1809_0003|orf6.1992|CA0829|CaO19.250|CaO19.7881	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	565143	566008	-	orf19.251	565143	566008	1	566008	565143	565950	565240		orf19.7882|orf6.1991|IPF17186|IPF17186.2|IPF29885.1|Contig4-1809_0005|YDR533C|CA0828|CaO19.251	ThiJ/PfpI protein family; antigenic (Cand a 3 allergen); binds human immunoglobulin E; 2 N-glycosylation motifs; alkaline, fluconazole, Hog1p-downregulated; induced in core stress response or by oxidative stress (via Cap1p) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	566949	567245	+	ntar_572	566949	567245	1	566949	567245					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	567131	568221	-	orf19.252	567131	568221	1	568221	567131	568051	567698		orf19.7884|orf19.7885|IPF18859.2|IPF29889.1|orf6.1989|orf6.1988|orf19.253|CaO19.252|CaO19.7884	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	568641	570052	-	orf19.254	568641	570052	1	570052	568641	570050	568722		orf19.7886|IPF18861.2|IPF16370.2|Contig4-2723_0001|orf6.1987|orf6.691|CA0152|CaO19.254|IPF16368.3f	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	570073	573752	-	orf19.255	570073	573752	2	573752|572848	573546|570073	572779	570263		ZCF1|orf19.7887|IPF26971.1|IPF16368.2|Contig4-2723_0002|Contig4-2723_0003|Contig4-2723_0004|orf6.692|CA0153|IPF16368.5f	Predicted zinc-cluster protein of unknown function; possibly transcriptionally regulated upon hyphal formation; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=F]
Ca21chr3	572938	573620	+	orf19.257	572938	573620	1	572938	573620	572938	573264		orf19.7889|orf6.694|orf6.1190|IPF27080.1|IPF29899.1|CaO19.257	[NOT TRANSCRIBED?] Transcription is negatively regulated by Sfu1p; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	576627	577385	+	orf19.258	576627	577385	1	576627	577385	576627	577385		orf19.7890|IPF15540.1|IPF13725.1|Contig4-2723_0007|orf6.1191|orf6.1453|CA0486|CaO19.258|IPF15540	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	577684	578645	+	orf19.259	577684	578645	1	577684	578645	577762	578517		orf19.7891|IPF19234.2|IPF13724.1|Contig4-2723_0008|orf6.1454|CA0487|CaO19.7891|CaO19.259|IPF13724	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	578538	580612	-	orf19.260	578538	580612	1	580612	578538	580399	578645	SLD1	orf19.7892|IPF13723.2|IPF29880.1|Contig4-2723_0009|orf6.1455|orf6.548|CA0109|CaO19.260|IPF13723	Sphingolipid delta-8 desaturase, catalyzes desaturation at carbon-8 in the long-chain base moiety of ceramides during glucosylceramide synthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	580748	582721	-	orf19.261	580748	582721	1	582721	580748	582644	580884		orf19.7894|IPF12686.3|IPF13722.2|Contig4-2723_0010|orf6.1456|orf6.2014|orf6.549|CA0488|CaO19.261|SEC59	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	583155	586967	+	orf19.262	583155	586967	1	583155	586967	583232	586945	SMC3	orf19.7895|IPF12682.2|IPF18780.2|IPF18779.1|Contig4-2723_0011|orf6.2013|orf6.2357|orf6.2358|CA0846|CA6315|orf19.263|SMC3.5f	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Smc3p, which is an ATPase involved in sister chromatid cohesion [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	586983	587157	-	ntar_573	586983	587157	1	587157	586983					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	588367	589623	+	orf19.263.1	588367	589623	2	588367|589095	588476|589623	588474	589304			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	590127	591889	+	orf19.264	590127	591889	1	590127	591889	590523	591875		orf19.7896|IPF16314.2|IPF29883.1|Contig4-2401_0007|Contig4-2401_0009|orf6.2012|orf6.2359|CA0845|CaO19.264|IPF16314	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	591862	592106	-	tf(gaa)1	591862	592106	2	592106|592054	592070|591862				tF(GAA)1.2	tRNA-Phe predicted by tRNAscan-SE; has atypical tertiary T15A48 basepair (rather than R15Y48 basepair) [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	592115	592187	-	tr(ucu)1	592115	592187	1	592187	592115				tR(UCU)1.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	593881	595383	+	orf19.265	593881	595383	1	593881	595383	593881	595383		orf19.7897|IPF27009.1|IPF16342.2|Contig4-2401_0010|orf6.2360|CA6172|CaO19.265|CaO19.7897|IPF27009	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	595365	599493	-	orf19.267	595365	599493	1	599493	595365	599391	595750		orf19.7899|IPF19341.2|IPF11460.2|orf6.2362|CA1060|CaO19.267|IPF11460	Protein required for normal filamentous growth; mRNA binds to She3p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	599659	601078	-	orf19.268	599659	601078	1	601078	599659	601053	599710		orf19.7900|IPF11452.2|IPF9532.3|Contig4-2183_0007|Contig4-2524_0002|orf6.2363|orf6.3181|CA1599|CaO19.268|RAD28|IPF11452	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	600501	600644	+	ntar_574	600501	600644	1	600501	600644					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	601274	602794	+	orf19.269	601274	602794	1	601274	602794	601357	602733	SES1	orf19.7901|IPF9534.2|IPF18778.2|Contig4-2183_0004|orf6.3180|CA1598|CaO19.269	Seryl-tRNA synthetase; charges the tRNA that recognizes the CUG codon, which typically specifies Leu, but specifies Ser in C. albicans; complements S. cerevisiae ses1 mutant viability; soluble protein in hyphae; macrophage-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	602990	603625	+	orf19.270	602990	603625	1	602990	603625	603155	603469		orf19.7902|IPF27092.1|IPF9536.2|Contig4-2183_0003|orf6.3179|CaO19.270|CaO19.7902	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	604209	604985	+	orf19.271	604209	604985	1	604209	604985	604209	604985	ADH4	orf19.7903|IPF9538|Contig4-2183_0001|IPF27033.1|IPF9538.2|Contig4-2499_0006|orf6.3178|CA1597|CaO19.271|CaO19.7903	[NOT TRANSCRIBED?] Protein not essential for viability; transcription is increased in an azole-resistant strain overexpressing MDR1; transcription is increased in populations of cells exposed to fluconazole over multiple generations [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	605087	607512	-	orf19.272	605087	607512	1	607512	605087	607347	605191	FAA21	orf19.7904|IPF26977.1|IPF9539.2|Contig4-2499_0005|orf6.3177|CA1596|FAA2-2|CaO19.272|CaO19.7904	Predicted acyl CoA synthetase; upregulated upon phagocytosis; transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	609807	611400	-	orf19.273	609807	611400	1	611400	609807	611088	610081		orf19.7905|IPF9544.2|IPF29884.1|Contig4-2499_0001|orf6.3176|CA1595|CaO19.273|IPF9544	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	612058	615371	+	orf19.274	612058	615371	1	612058	615371	612138	615311	TFC4	orf19.7906|IPF27095.1|IPF10122.3|Contig4-2667_0008|Contig4-2667_0010|orf6.3175|orf6.4803|CA2774|CaO19.274|IPF10122.2	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	615488	616790	+	orf19.275	615488	616790	1	615488	616790	615566	616138		orf19.7907|IPF27052.1|IPF10123.1|Contig4-2667_0007|orf6.4804|CA2775|CaO19.7907|POP5|CaO19.275	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	615911	617647	-	orf19.276	615911	617647	1	617647	615911	617520	616108		orf19.7908|IPF27015.1|IPF10124.1|Contig4-2667_0006|orf6.4805|CA2776|CaO19.276|CaO19.7908|IPF10124	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	617185	617490	+	ntar_575	617185	617490	1	617185	617490	617185	617367			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	618098	619948	+	orf19.277	618098	619948	1	618098	619948	618203	619747	THI6	orf19.7909|IPF27007.1|IPF10126.2|Contig4-2667_0004|orf6.4806|CA2777|CaO19.7909|CaO19.277	Putative thiamin-phosphate pyrophosphorylase, hydroxyethylthiazole kinase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	619764	621279	-	orf19.278	619764	621279	1	621279	619764	621211	619784		orf19.7910|IPF27013.1|IPF10127.2|Contig4-2667_0002|orf6.4807|CA2778|CaO19.278|MTR1|CaO19.7910|MTR	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	621869	622279	+	orf19.279	621869	622279	1	621869	622279	621869	622279		orf19.7911|IPF27060.1|IPF19768.1|orf6.4808|CA2779|CaO19.279|CaO19.7911|IPF3836	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	622380	622790	-	orf19.280	622380	622790	1	622790	622380	622790	622380		orf19.7912|IPF19669.1|Contig4-3050_0012|orf6.4297|orf6.4809|CaO19.7912|CaO19.280	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	623049	624146	+	orf19.281	623049	624146	1	623049	624146	623049	624146		orf19.7913|IPF27023.1|IPF3798.2|orf6.4810|CA2780|CaO19.7913|CaO19.281|IPF3831	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	624288	624944	+	orf19.284	624288	624944	1	624288	624944	624288	624944		orf19.7916|IPF27036.1|IPF3805.2|orf6.4813|CA2781|CaO19.284|CaO19.7916|IPF3821	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	625144	625990	+	orf19.285	625144	625990	1	625144	625990	625194	625583		orf19.7917|IPF27074.1|IPF3806.1|Contig4-3050_0029|orf6.4814|CA2782|CaO19.285|CaO19.7917|IPF3806	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	626061	626594	+	orf19.286	626061	626594	1	626061	626594	626061	626594		orf19.7918|IPF27054.1|IPF3808.1|IPF3808|Contig4-3050_0026|orf6.4815|CA2783|ATG10|CaO19.7918|CaO19.286	Decreased transcription is observed upon fluphenazine treatment; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	626403	627280	-	orf19.287	626403	627280	1	627280	626403	627209	626625		orf19.7919|IPF27050.1|IPF3810.1|Contig4-3050_0025|orf6.4816|CA2784|CaO19.7919|CaO19.287|IPF3810	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; identified in detergent-resistant membrane fraction (possible lipid raft component) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	627761	630135	-	orf19.288	627761	630135	1	630135	627761	630029	628185		orf19.7920|IPF26987.1|IPF3814.2|Contig4-3050_0022|orf6.4817|CA2785|MET13|CaO19.7920|CaO19.288	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	630303	634859	-	orf19.290	630303	634859	1	634859	630303	634859	630516	KRE5	orf19.7922|IPF27067.1|IPF3818.3|Contig4-3050_0020|orf6.4303|orf6.4819|CA2786|GPT1|CaO19.290|KRE5.3eoc|IPF3818.2	Predicted UDP-glucose:glycoprotein glucosyltransferase; required for wild-type 1,6-beta-D-glucan biosynthesis, hyphal growth, and virulence in mouse IV infection; production in S. cerevisiae partially complements defects of a kre5 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	635019	635983	-	orf19.291	635019	635983	1	635983	635019	635964	635044		orf19.7923|IPF27029.1|IPF19948.1|Contig4-3050_0016|Contig4-3050_0017|orf6.4302|CA2409|CaO19.291|CaO19.7923|IPF19948	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	636037	636896	-	orf19.292	636037	636896	1	636896	636037	636896	636240		orf19.7924|IPF27038.1|IPF3821.1|orf6.4301|CaO19.7924|CaO19.292	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	637038	638135	-	orf19.295	637038	638135	1	638135	637038	638135	637038		orf19.7927|IPF27021.1|IPF3831.1|Contig4-3050_0013|orf6.4298|CaO19.295|CaO19.7927	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	638392	638802	+	orf19.296	638392	638802	1	638392	638802	638392	638802		orf19.7928|IPF27058.1|IPF3833.1|orf6.4297|CA2408|CaO19.296|CaO19.7928|IPF3833	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	638903	639539	-	orf19.297	638903	639539	2	639539|639329	639411|638903	639475	638903	DTD2	orf19.7929|IPF27061.1|IPF3836.2|Contig4-3050_0011|orf6.4296|CaO19.7929|CaO19.297	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	639474	639977	+	orf19.298	639474	639977	1	639474	639977	639474	639977		IPF27056.1|IPF18470.1|orf6.4295|CaO19.298|CaO19.7930	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	639684	641310	-	orf19.299	639684	641310	1	641310	639684	641124	639712	ECM14	orf19.7931|IPF27014.1|IPF3838.2|Contig4-3050_0009|orf6.4294|CA2407|CaO19.299|CaO19.7931	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	641748	643681	+	orf19.300	641748	643681	1	641748	643681	641881	643464	AIP2	orf19.7932|orf19.7933|IPF26999.1|IPF3840.1|Contig4-3050_0007|orf6.4293|CA2406|CaO19.300|DLD2|CaO19.7932	Protein described as an actin interacting protein; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); repressed in the presence of elevated CO2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	643766	646852	-	orf19.301	643766	646852	1	646852	643766	646395	644134	PGA18	orf19.7933|IPF26975.1|IPF3844.2|Contig4-3050_0006|orf6.4292|CA2405|CaO19.301|CaO19.7933|IPF3844	Putative GPI-anchored protein of unknown function; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	651518	652612	+	orf19.302	651518	652612	1	651518	652612	651675	652157		orf19.7934|IPF27043.1|IPF1468.1|Contig4-2823_0003|orf6.4440|CA2508|BET5|CaO19.302|CaO19.7934	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	652786	654420	+	orf19.304	652786	654420	1	652786	654420	652875	654392		orf19.7936|IPF26998.1|IPF1471.2|Contig4-2823_0004|orf6.4442|CA2509|CaO19.7936|CaO19.304|IPF1471	Putative transporter similar to MDR proteins; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	654045	654379	-	ntar_576	654045	654379	1	654379	654045	654379	654221			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	654462	655960	+	orf19.305	654462	655960	1	654462	655960	654607	655857		orf19.7937|IPF27019.1|IPF1472.2|Contig4-2823_0007|orf6.4443|CA2510|CaO19.7937|CaO19.305|IPF1472	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	656146	658073	+	orf19.306	656146	658073	1	656146	658073	656186	658045	USO5	orf19.7938|IPF26986.1|IPF1474.2|Contig4-2823_0010|orf6.4444|CA2511|ABPD|CaO19.306|CaO19.7938|IPF1474	Protein of unknown function; transcription is induced upon filamentous growth and in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	657992	659958	-	orf19.307	657992	659958	1	659958	657992	659570	658098		orf19.7939|IPF27011.1|IPF1476.1|Contig4-2823_0011|orf6.4445|CA2512|HFI1|CaO19.307|CaO19.7939	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	660884	662617	+	orf19.308	660884	662617	1	660884	662617	660968	662503		orf19.7940|IPF27003.1|IPF1478.1|orf6.4446|CA2513|SNG1|CaO19.7940|CaO19.308	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	663303	664880	-	orf19.309	663303	664880	1	664880	663303	664880	663303	DAL5	orf19.7941|IPF27000.1|IPF1479.1|Contig4-1938_0003|orf6.4447|CA6173|CaO19.309|DAL51|CaO19.7941|IPF1479	Putative allantoate permease; nitrogen catabolite repressed gene, induced in absence of preferred N sources; gene regulation by nitrogen source requires Gat1p; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr3	665755	667275	-	orf19.310	665755	667275	1	667275	665755	667275	665755		orf19.7943|IPF1480.1|IPF1481.1|Contig4-1938_0004|Contig4-1938_0005|orf6.4448|orf6.4450|CA6248|orf19.312|CA6247|ECM181.5f|ECM181.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	667605	669317	-	orf19.313	667605	669317	1	669317	667605	669317	667605	DAL4	orf19.7944|IPF27017.1|IPF1484.2|Contig4-2361_0006|orf6.4451|orf6.5645|CA2514|FUR41|CaO19.313|FUR4	Putative allantoin permease; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	669559	669745	+	ntar_577	669559	669745	1	669559	669745					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	670708	674032	+	orf19.314	670708	674032	1	670708	674032	670807	673806		orf19.7946|IPF6747.2|IPF29919.1|Contig4-2797_0025|orf6.5644|CA3394|CaO19.7946|STB2|CaO19.314|IPF6747	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	673373	674486	-	orf19.315	673373	674486	1	674486	673373	674413	673799		orf19.7947|IPF27041.1|IPF6748.2|Contig4-2797_0022|orf6.5643|CA3393|CaO19.315|CaO19.7947|IPF6748	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	674575	675723	+	orf19.316	674575	675723	1	674575	675723	674678	675574	SEC13	orf19.7948|IPF27025.1|IPF6749.2|Contig4-2797_0021|orf6.5642|CA3392|CaO19.316|CaO19.7948	Protein described as protein transport factor; antigenic during murine systemic infection; macrophage-downregulated protein abundance; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	675645	676658	-	orf19.317	675645	676658	1	676658	675645	676625	675702		orf19.7949|IPF6750.1|IPF19266.2|Contig4-2797_0017|orf6.462|orf6.5641|CA3391|CaO19.317|PNP1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	676900	678515	-	orf19.318	676900	678515	1	678515	676900	678440	677031		orf19.7950|IPF6752.1|IPF19265.1|Contig4-2797_0013|orf6.463|orf6.5640|CAF17|CaO19.318|CA3390	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	678696	679377	-	orf19.319	678696	679377	1	679377	678696	679196	678846		orf19.7951|IPF6754.1|IPF19264.2|Contig4-2797_0011|orf6.464|orf6.5639|CA3389|CaO19.319|IPF6754	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	680021	681186	+	orf19.320	680021	681186	1	680021	681186	680123	681124		orf19.7952|IPF27026.1|IPF6755.1|Contig4-2797_0005|orf6.5638|CA3388|RSD1|CaO19.320|CaO19.7952|IPF6755	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	680638	680969	-	ntar_578	680638	680969	1	680969	680638					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	681270	681359	-	tk(cuu)1	681270	681359	2	681359|681305	681323|681270				tK(CUU)1.2	tRNA-Lys predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	681475	683441	-	orf19.321	681475	683441	1	683441	681475	683327	681501		orf19.7953|IPF6757.1|IPF29879.1|Contig4-2797_0003|Contig4-2797_0004|orf6.5637|CA3387|MUP3|CaO19.7953|CaO19.321	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	683808	684149	+	ntar_579	683808	684149	1	683808	684149					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	684525	684741	+	ntar_580	684525	684741	1	684525	684741					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	684595	685029	-	orf19.322	684595	685029	1	685029	684595	685029	684595		orf19.7954|IPF6758.2|IPF29887.1|orf6.5636|CA3386|CaO19.322|IPF6758	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	685028	689768	+	orf19.323	685028	689768	1	685028	689768	685198	689637		orf19.7955|IPF6764.2|IPF29893.1|Contig4-2777_0010|orf6.5635|CA3385|CaO19.7955|CaO19.323|DRS23	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	690000	693000	+	orf19.325	690000	693000	1	690000	693000	690043	692838		orf19.7957|IPF26957.1|IPF8362.2|orf6.5633|CA3384|CaO19.7957|CFT2|CaO19.325|IPF8362	Putative protein of unknown function; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	692255	692399	-	ntar_581	692255	692399	1	692399	692255					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	693005	693708	+	orf19.326	693005	693708	1	693005	693708	693145	693600		orf19.7958|IPF27062.1|IPF8359.2|Contig4-2705_0001|orf6.5632|CA3383|CaO19.7958|CaO19.326|IPF8359	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	693564	694340	-	orf19.327	693564	694340	1	694340	693564	694289	693888	HTA3	orf19.7959|IPF27053.1|IPF8358.1|Contig4-2705_0004|orf6.5631|CA3382|CaO19.7959|HTZ1|CaO19.327	Protein described as histone H2A; amphotericin B repressed; flucytosine induced; RNA abundance regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	694490	696551	-	orf19.328	694490	696551	1	696551	694490	696524	694542	NPR2	orf19.7960|IPF26980.1|IPF8357.2|Contig4-2705_0009|orf6.5630|CA3381|CaO19.7960|CaO19.328	Predicted ORF in Assemblies 19, 20 and 21; induced during infection of murine kidney, compared to growth in vitro; has murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	696706	698394	-	orf19.329	696706	698394	1	698394	696706	698366	696999		orf19.7961|IPF27016.1|IPF8351.2|Contig4-2705_0010|Contig4-2705_0011|orf6.5629|CA3380|CaO19.329|MSL5|CaO19.7961	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	698506	699250	-	orf19.331	698506	699250	1	699250	698506	699226	698552		orf19.7963|IPF27042.1|IPF8350.1|Contig4-2705_0012|orf6.5627|CA3379|CaO19.331|CaO19.7963|IPF8350	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	698632	699116	+	ntar_582	698632	699116	1	698632	699116	698751	699116			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	699225	699995	+	orf19.330.1	699225	699995	1	699225	699995	699419	699652		IPF26964.1|IPF8348.1|CA3378|RUB1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	699566	701925	-	orf19.332	699566	701925	1	701925	699566	701824	699719		orf19.7964|IPF8347.2|IPF19023.2|Contig4-2705_0015|orf6.1189|orf6.5626|CA3377|CLF1|CaO19.332	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	702109	703112	-	orf19.332.1	702109	703112	1	703112	702109	702579	702295			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	703184	703838	+	te(uuc)1	703184	703838	2	703184|703243	703220|703838				tE(UUC)1.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	704137	706295	+	orf19.333	704137	706295	1	704137	706295	704239	705819	FCY2	orf19.7965|FCY22|IPF8342.3|IPF12764.2|Contig4-2216_0002|Contig4-2705_0018|orf6.1188|orf6.1275|orf6.5625|CA0357|FCY21|CaO19.333	Putative purine-cytosine permease of pyrimidine salvage; similar to S. cerevisiae Fcy2p; mutation associated with resistance to flucytosine in clinical isolates; transposon mutation affects filamentation; farnesol-upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	708195	709396	-	orf19.334	708195	709396	1	709396	708195	709157	708585		orf19.7966|IPF12758.2|IPF29886.1|Contig4-2216_0007|orf6.1276|orf6.7218|CA0394|CaO19.334|IPF12758.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	711213	711356	+	ntar_583	711213	711356	1	711213	711356					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	714072	716861	+	orf19.335	714072	716861	1	714072	716861	714305	716746		orf19.7967|IPF26972.1|IPF13709.2|orf6.7219|CA4629|CaO19.7967|CaO19.335|SDS22|IPF13709	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	716491	717501	-	orf19.336	716491	717501	1	717501	716491	717415	716906	YAH1	orf19.7969|orf6.7220|IPF27048.1|IPF1537.1|Contig4-3090_0001|CA4630|CaO19.7969|CaO19.336|IPF1537	Similar to oxidoreductases; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	717656	718605	-	orf19.337	717656	718605	2	718605|718346	718470|717656	718563	717787		orf19.7970|IPF27044.1|IPF1535.1|Contig4-3090_0002|orf6.7221|CA4631|VTI1|CaO19.337	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	718764	722112	-	orf19.338	718764	722112	1	722112	718764	722020	718877		orf19.7971|IPF27096.1|IPF1531.2|Contig4-3090_0006|Contig4-3090_0007|orf6.7222|CA4632|CaO19.7971|CaO19.338|IPF1531	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-downregulated; shows colony morphology-related gene regulation by Ssn6p; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	722844	724725	-	orf19.339	722844	724725	1	724725	722844	724678	722954	NDE1	orf19.7972|IPF26993.1|IPF1529.1|NDH1|Contig4-3090_0011|orf6.7223|CA4633|CaO19.7972|CaO19.339	Putative NADH dehydrogenase that could act alternatively to complex I in respiration; caspofungin repressed; fungal-specific (no human or murine homolog); transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	725078	726306	-	orf19.340	725078	726306	1	726306	725078	726276	725677		orf19.7973|IPF27045.1|IPF1526.1|Contig4-3090_0013|orf6.7224|CA4634|CaO19.340|SRN2|CaO19.7973|IPF1526	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	725320	725812	+	ntar_584	725320	725812	1	725320	725812	725630	725812			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	726435	728484	-	orf19.341	726435	728484	1	728484	726435	728410	726479		orf19.7974|IPF26983.1|IPF1524.2|Contig4-3090_0015|orf6.7225|TPO3|CA4635|CaO19.7974|CaO19.341|IPF1524	Putative spermidine export pump; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	726628	727298	+	ntar_585	726628	727298	1	726628	727298	726819	726989			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	727426	727783	+	ntar_586	727426	727783	1	727426	727783	727431	727691			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	728994	731040	-	orf19.342	728994	731040	1	731040	728994	730949	728994	BMT7	orf19.7975|IPF26981.1|IPF1520.1|Contig4-3090_0018|orf6.7226|CA4636|CaO19.7975|WRY8|CaO19.342|IPF1520	Putative beta-mannosyltransferase, member of a 9-gene family that includes characterized genes BMT1, BMT2, BMT3, and BMT4 with roles in beta-1,2-mannosylation of cell wall phosphopeptidomannan; downregulated in an azole-resistant strain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr3	729081	729470	+	ntar_587	729081	729470	1	729081	729470					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	732851	734535	-	orf19.344	732851	734535	1	734535	732851	734432	733617		orf19.7977|IPF27032.1|IPF1514.2|Contig4-3090_0023|orf6.7228|CA4637|CaO19.7977|CaO19.344|IPF1514	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2; possibly transcriptionally regulated by Tac1p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	737469	739081	+	orf19.345	737469	739081	1	737469	739081	737586	739061		orf19.7978|IPF27012.1|IPF1510.1|Contig4-3090_0030|orf6.7229|CA4638|UGA21|CaO19.7978|CaO19.345|UGA2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	738748	738930	-	ntar_588	738748	738930	1	738930	738748					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	739053	741071	-	orf19.346	739053	741071	1	741071	739053	740761	739199		orf19.7979|IPF27006.1|IPF1509.2|Contig4-3090_0031|orf6.7230|CA4639|CaO19.346|CaO19.7979|IPF1509	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	743253	744093	-	ntar_589	743253	744093	1	744093	743253					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	743351	744193	+	orf19.347	743351	744193	1	743351	744193	743351	744193	RSN1	orf19.7980|IPF27030.1|IPF1506.1|Contig4-3090_0035|orf6.7231|CA4640|CaO19.7980|CaO19.347|IPF1506	Protein induced during the mating process [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr3	745746	748202	+	orf19.348	745746	748202	1	745746	748202	745944	748100	SKN2	orf19.7981|IPF26976.1|IPF1505.2|Contig4-3090_0037|orf6.7232|CA4641|CaO19.348|CaO19.7981|IPF1505	Protein with a potential role in beta-1,6 glucan biosynthesis; has similarity to Kre6p and Skn1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	746170	748211	-	ntar_590	746170	748211	1	748211	746170	747451	747164			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	748333	750702	-	orf19.349	748333	750702	1	750702	748333	750600	748495		orf19.7982|IPF26978.1|IPF1500.2|Contig4-3090_0039|orf6.7233|CA4642|CaO19.7982|NCA2|CaO19.349|IPF1500	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	748387	748645	+	ntar_591	748387	748645	1	748387	748645					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	750849	751876	-	orf19.350	750849	751876	1	751876	750849	751678	750923	PRE9	orf19.7983|IPF27035.1|IPF1499.1|Contig4-3090_0040|orf6.7234|Y13|CA4643|CaO19.7983|CaO19.350	Alpha3 (C9) subunit of the 20S proteasome; transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	752032	752765	+	orf19.351	752032	752765	1	752032	752765	752128	752595		orf19.7984|IPF27055.1|IPF1497.1|Contig4-3090_0042|orf6.7235|CA4644|CaO19.7984|CaO19.351|IPF1497	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	752309	752858	-	ntar_592	752309	752858	1	752858	752309					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	752835	754611	+	orf19.352	752835	754611	1	752835	754611	752841	754472		orf19.7985|IPF26995.1|IPF1496.1|Contig4-3090_0045|orf6.7236|CA4645|CaO19.352|CaO19.7985|IPF1496	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	754421	755713	-	orf19.353	754421	755713	1	755713	754421	755571	754516	ULP1	orf19.7986|IPF27024.1|IPF1495.1|Contig4-3090_0046|orf6.7237|CA4646|CaO19.353|ULP3|CaO19.7986|IPF1495	Putative SUMO deconjugation enzyme that cleaves the small ubiquitin-like modifier (SUMO) off proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	755812	757523	+	orf19.354	755812	757523	1	755812	757523	755917	757389		orf19.7987|IPF27010.1|IPF1493.1|Contig4-3090_0048|orf6.7238|CA4647|CaO19.7987|CaO19.354|IPF1493	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	757556	758827	-	orf19.355	757556	758827	1	758827	757556	758827	757556		orf19.7988|IPF27018.1|IPF1492.1|Contig4-3090_0049|orf6.7239|TCD4|CaO19.7988|CaO19.355	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	759238	760347	-	orf19.356	759238	760347	2	760347|760120	760230|759238	760270	759370	GTT13	orf19.7989|IPF27039.1|IPF1491.1|Contig4-3090_0050|orf6.7240|CaO19.7989|CaO19.356	Predicted ORF in Assemblies 19, 20 and 21; opaque-specific transcription; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	760976	761194	-	ntar_593	760976	761194	1	761194	760976					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	761441	762441	+	orf19.357	761441	762441	1	761441	762441	761476	762441		orf19.7990|IPF27027.1|IPF1487.2|Contig4-2361_0002|orf6.7241|PHB12|CaO19.357|CaO19.7990	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=H scenario_last_exon=H]
Ca21chr3	762509	763335	-	orf19.359	762509	763335	2	763335|763229	763307|762509	763335	762509	GTT12	orf19.7992|IPF27034.1|IPF1485.1|Contig4-2361_0003|orf6.7243	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	763686	763825	-	ntar_594	763686	763825	1	763825	763686					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	763879	765591	+	orf19.360	763879	765591	1	763879	765591	763879	765591	FUR4	orf19.7993|IPF27031.1|IPF18195.1|orf6.7244|CaO19.7993|FUR42|CaO19.360	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	765588	765896	-	orf19.6957	765588	765896	1	765896	765588	765896	765588		orf19.14219|IPF20210.1|IPF27615.1|Contig4-2361_0007|orf6.7343|CaO19.14219|CaO19.6957	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	765922	767442	+	orf19.6958	765922	767442	1	765922	767442	765922	767442	ECM18	orf19.14220|IPF20190.1|IPF8656.3|Contig4-3085_0034|orf6.7344|CA4720|ECM181|CaO19.6958|CaO19.14220|IPF8656.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	768399	770035	+	orf19.6956	768399	770035	1	768399	770035	768458	770035	DAL9	orf19.14218|IPF20188.1|IPF8658.2|Contig4-3085_0033|orf6.7342|CA4719|DAL51|CaO19.6956|DAL52|CaO19.14218	Putative allantoate permease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr3	770502	772080	+	orf19.6955	770502	772080	1	770502	772080	770523	771923	HBR3	orf19.14217|IPF20192.1|IPF8661.1|Contig4-3085_0030|Contig4-3085_0031|orf6.7341|CA4718|CaO19.14217|NOB1|CaO19.6955|IPF8661	Essential, uncharacterized protein; regulated by hemoglobin; S. cerevisiae ortholog is essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	772136	774264	+	orf19.6953	772136	774264	1	772136	774264	772176	774092	IRS4	orf19.14215|IPF20183.1|IPF8663.2|Contig4-3085_0029|orf6.7339|CA4717|CaO19.14215|CaO19.6953|IPF8663	Protein with roles in cell wall integrity, systemic (but not oral) murine infection, adherence, hyphal growth, and agar-embedded filamentous growth; antigenic in human infection; similar to S. cerevisiae Irs4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	774438	776912	+	orf19.6952	774438	776912	1	774438	776912	774619	776628		orf19.14214|IPF8666|IPF19384.2|IPF8666.2|Contig4-3085_0025|orf6.231|orf6.7338|CA4716|HDA2|CaO19.6952	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	777271	779398	+	orf19.6951	777271	779398	1	777271	779398	777436	779205		orf19.14213|IPF19383.2|IPF16613.2|Contig4-3085_0023|orf6.232|orf6.7337|CA4715|DPL1|CaO19.6951	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	779563	780900	+	orf19.6950	779563	780900	1	779563	780900	779809	780816		orf19.14212|IPF5912|IPF20198.1|IPF5912.2|Contig4-3085_0022|orf6.7336|CA4714|CaO19.6950|CaO19.14212	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	781763	782264	+	ntar_595	781763	782264	1	781763	782264	781939	782100			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	782029	782355	-	orf19.6949	782029	782355	1	782355	782029	782355	782029			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	782489	784183	+	orf19.6948	782489	784183	1	782489	784183	782740	783678	CCC1	orf19.14210|IPF20199.1|IPF5909.2|Contig4-3085_0020|orf6.7334|CA4713|CaO19.14210|CaO19.6948	Putative manganese transporter, required for normal filamentous growth; mRNA binds to She3p and is localized to hyphal tips; repressed by nitric oxide and alkaline pH; shows colony morphology-related regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	784703	785635	+	orf19.6947	784703	785635	2	784703|784915	784837|785635	784809	785635	GTT11	orf19.14209|IPF20202.1|IPF5904.1|Contig4-3085_0018|orf6.7333|CA4712|GTT1|GTT1.3	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	785703	786650	-	orf19.6944	785703	786650	1	786650	785703	786554	785703	PHB1	orf19.14206|IPF20201.1|IPF5903.1|Contig4-3085_0017|orf6.7330|CA4711|CaO19.6944|PHB11|CaO19.14206	Protein described as prohibitin; identified in detergent-resistant membrane fraction (possible lipid raft component); predicted N-terminal acetylation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr3	787030	787738	+	orf19.6943	787030	787738	1	787030	787738	787179	787508		orf19.14205|orf6.7329|CaO19.6943|CaO19.14205	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	787513	789784	-	orf19.6942	787513	789784	1	789784	787513	789659	787611	ORC3	orf19.14204|IPF20182.1|IPF5897.1|Contig4-3085_0013|Contig4-3085_0014|orf6.7328|CA4710|CaO19.14204|CaO19.6942	Protein similar to S. cerevisiae Orc3p, which is a component of the origin recognition complex involved in DNA replication; mutation confers hypersensitivity to toxic ergosterol analog; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	790151	790643	+	ntar_596	790151	790643	1	790151	790643	790448	790576			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	791364	793585	+	orf19.6941	791364	793585	1	791364	793585	791735	793468		orf19.14203|IPF20184.1|IPF5895.1|Contig4-3085_0010|orf6.7327|CA4709|DGA2|CaO19.14203|CaO19.6941|IPF5895	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	793350	794557	-	ntar_597	793350	794557	1	794557	793350	794436	793570			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	794015	794455	+	orf19.6940	794015	794455	1	794015	794455	794015	794455			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	794740	796189	+	orf19.6938	794740	796189	1	794740	796189	794875	795909	MEU1	orf19.14200|IPF20196.1|IPF5890.2|Contig4-3085_0005|Contig4-3085_0007|orf6.7324|CA4708|CaO19.6938|CaO19.14200	Predicted ORF in Assemblies 19, 20 and 21;protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	797752	799619	+	orf19.6937	797752	799619	1	797752	799619	797830	799560	PTR2	orf19.14199|IPF20186.1|IPF4202.2|Contig4-3085_0002|orf6.7323|CA4707|PTR22|CaO19.14199|CaO19.6937|PTR21	Putative oligopeptide transporter; regulated by Stp2p and Stp3p; transcriptionally induced upon phagocytosis by macrophage; downregulated by Rim101p at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	799957	802227	+	orf19.6936	799957	802227	1	799957	802227	800059	802158	RAD53	orf19.14198|IPF20181.1|IPF4205.1|Contig4-2365_0011|orf6.7322|CA4706|CaO19.6936|CaO19.14198	Protein involved in regulation of DNA-damage-induced filamentous growth; putative component of cell cycle checkpoint; ortholog of S. cerevisiae Rad53p, protein kinase required for cell-cycle arrest in response to DNA damage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	802135	803443	-	orf19.6934	802135	803443	1	803443	802135	803414	802215		orf19.14196|IPF20193.1|IPF4206.1|Contig4-2365_0002|orf6.7320|CA4705|PNT1|CaO19.6934|CaO19.14196|IPF4206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	803506	805044	+	orf19.6933	803506	805044	1	803506	805044	803538	804614		orf19.14195|IPF20194.1|IPF4207.2|Contig4-2365_0003|orf6.7319|CA4704|CaO19.14195|RRD2|CaO19.6933	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	804305	806101	-	orf19.6931	804305	806101	1	806101	804305	806089	804620		orf19.14193|IPF20191.1|IPF4212.2|Contig4-2365_0004|Contig4-2365_0005|Contig4-2365_0007|orf6.7317|CA4703|CLP1|CaO19.6931|CaO19.14193	Putative protein of unknown function; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	806229	807164	-	orf19.6930	806229	807164	1	807164	806229	807026	806310	SOL1	orf19.14192|IPF20203.1|IPF4213.2|Contig4-2365_0008|orf6.7316|CA4702|CaO19.14192|SIC1|CaO19.6930|IPF4213	Cell cycle regulator; partial functional homolog of S. cerevisiae Sic1p; protein degradation regulated by SCF(CDC4) pathway; CDK phosphorylation predicted; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	807855	808605	+	orf19.6929	807855	808605	1	807855	808605	807893	808420		orf19.14191|IPF20205.1|IPF4214.2|Contig4-2390_0002|orf6.7315|CA4701|CaO19.6929|CaO19.14191|IPF4214	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	808527	810483	-	orf19.6928	808527	810483	1	810483	808527	810379	808745	SAP9	orf19.14190|IPF20187.1|IPF4215.2|Contig4-2390_0003|orf6.7314|CA4700|YPS1|CaO19.14190|CaO19.6928	Secreted aspartyl proteinase; roles in adhesion, cell surface integrity; induced by antifungal drugs, stationary phase, or in white-phase cells; farnesol-downregulated in biofilm; autocatalytic processing; GPI-anchor; N-glycosylated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	811407	811610	+	ntar_598	811407	811610	1	811407	811610					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	811456	813167	-	orf19.6927	811456	813167	1	813167	811456	812977	811934	PEP8	orf19.14189|IPF20195.1|IPF4220.1|Contig4-2390_0008|orf6.7313|CA4699|CaO19.14189|CaO19.6927|IPF4220	Protein similar to S. cerevisiae Pep8p, which is involved in retrograde transport; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	813337	817870	+	orf19.6926	813337	817870	1	813337	817870	813708	817709	CSC25	orf19.14188|CDC25|IPF20209.1|IPF4222.2|orf6.7312|CA4698|CaO19.6926|CaO19.14188	Guanyl-nucleotide exchange factor; activator of Ras/adenylyl cyclase pathway; functional homolog of S. cerevisiae Cdc25p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	817739	818516	-	orf19.6925	817739	818516	1	818516	817739	818354	817962	HTB1	orf19.14187|IPF20208.1|IPF4223.1|orf6.7311|CA4697|CaO19.14187|CaO19.6925	Putative histone H2B; induced upon adherence to polystyrene; amphotericin B or caspofungin repressed; flucytosine or fluconazole induced; regulated by Efg1p; slow growth, increased white-to opaque switching in ectopic expression strains [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	818690	819417	+	orf19.6924	818690	819417	1	818690	819417	818899	819297	HTA1	orf19.14186|IPF20206.1|IPF4226.2|Contig4-2902_0018|orf6.7310|CA4696|CaO19.6924|CaO19.14186	Putative histone H2A; reduced mRNA abundance detected in homozygous fkh2 null mutant; amphotericin B repressed; farnesol regulated; RNA abundance regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	819562	819777	+	orf19.6923.1	819562	819777	1	819562	819777	819562	819777			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	819835	821320	+	orf19.6923	819835	821320	1	819835	821320	819835	820866		orf19.14185|IPF20197.1|IPF4229.2|Contig4-2902_0016|orf6.7309|CA4695|TAF11|CaO19.6923|IPF4229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	822246	822374	-	orf19.2813	822246	822374	1	822374	822246	822374	822246		orf19.10331|IPF24535.1|IPF3539.2|Contig4-3051_0001|orf6.4580|CA2617|CaO19.2813|CaO19.10331|IPF3539	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	826161	826250	+	orf19.6922	826161	826250	1	826161	826250				orf19.14184|IPF20211.1|IPF18180.2|orf6.7308	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	826452	828102	-	orf19.2812	826452	828102	1	828102	826452	828102	826591		orf19.10330|IPF24531.1|IPF19762.1|Contig4-1935_0004|orf6.4581|CA2618|SNG1|CaO19.2812|CaO19.10330|SNG2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	828675	830588	-	orf19.2810	828675	830588	1	830588	828675	830588	828675	AAP1	orf19.10328|IPF24528.1|IPF9490.2|Contig4-1993_0003|orf6.4583|CA2619|CaO19.2810|GAP32|CaO19.10328|IPF9490	Putative amino acid permease; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr3	832497	835184	-	orf19.2809	832497	835184	1	835184	832497	835184	832506	CTN3	orf19.10327|CAT3|IPF24526.1|IPF9496.1|Contig4-2893_0003|orf6.4584|CA2620|YAT2|CaO19.10327|CaO19.2809|IPF9496	Predicted peroxisomal carnitine acetyl transferase; Ura+ deletion strain has no obvious metabolic, hyphal, or virulence defects; transcription induced by macrophage engulfment, hyphal growth, starvation, or nonfermentable carbon sources [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	835798	835894	-	te(uuc)6	835798	835894	2	835894|835832	835858|835798				tE(UUC)6.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	836139	839513	-	orf19.2808	836139	839513	1	839513	836139	839513	836277		ZCF16|orf19.10326|CAT8|IPF24542.1|IPF9499.2|Contig4-2893_0005|Contig4-2893_0006|orf6.4585|CA2621|CaO19.10326|CaO19.2808|IPF9499	Predicted zinc-finger protein of unknown function, not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	839801	839938	-	ntar_599	839801	839938	1	839938	839801					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	840905	843753	-	orf19.2805	840905	843753	1	843753	840905	843670	841187		orf19.10323|orf19.10324|IPF19631.1|IPF24534.1|IPF19632.2|IPF11531.2|Contig4-2893_0007|Contig4-2893_0010|orf6.1492|orf6.4587|orf6.4588|CA2623|CA2622|orf19.2806|PER3.5f|PER3.exon1	Predicted ORF in Assemblies 19, 20 and 21; expression regulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	844496	845455	+	orf19.2804	844496	845455	2	844496|844760	844666|845455	844496	845455		orf19.10322|IPF24538.1|IPF11526.2|Contig4-2893_0012|orf6.1493|orf6.4589|CA0516|CaO19.2804|IPF11526	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	845759	845831	+	ta(agc)2	845759	845831	1	845759	845831				tA(AGC)2.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	846055	847597	-	orf19.2803	846055	847597	1	847597	846055	847277	846306	HEM13	orf19.10321|orf6.1494|IPF24536.1|IPF11525.2|Contig4-2893_0015|CA0517|CaO19.2803|CaO19.10321	Coproporphyrinogen III oxidase; antigenic in human, mouse; localizes to yeast-form cell surface, not hyphae; soluble in hyphae; iron-regulated expression; macrophage-downregulated protein; not Rfg1p regulated, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	848629	853315	-	orf19.918	848629	853315	1	853315	848629	853315	848777	CDR11	orf19.8533|orf19.8534|orf19.10320|CDR2|Contig4-2585_0004|IPF24540.1|IPF11524.1|IPF12975.1|IPF26378.1|IPF29637.1|Contig4-2585_0001|Contig4-2893_0020|orf6.1644|orf6.1495|CDR5|CDR99|CA0518|CA0610|CA0609|orf19.919|orf19.2802|PDR10|CDR11.5f	Putative transporter of PDR subfamily of ABC family; Gcn4p-regulated; upregulated by Rim101p at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	854779	855950	+	orf19.913.2	854779	855950	2	854779|855234	855114|855950	855058	855584		IPF12970.3|IPF16430.1|CA0118|IPF16430|IPF16430.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	856688	858208	+	orf19.5854	856688	858208	1	856688	858208	856951	857799	SBP1	orf19.13276|IPF19078.2|IPF10692.2|Contig4-2525_0004|orf6.5046|CA2951|CaO19.13276|CaO19.5854|CA0252|SBP1.5eoc|IPF19078.1	Similar to RNA binding proteins; downregulated upon adherence to polystyrene; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	858422	859327	+	orf19.5854.1	858422	859327	1	858422	859327	858794	859273		IPF21174.1|IPF21316.1|IPF19670.1|IPF19671.1|Contig4-2525_0005|CA2952|IPF19671	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	859231	862275	-	orf19.5855	859231	862275	1	862275	859231	861887	859329	MBP1	orf19.13277|IPF21163.1|IPF10688.2|Contig4-2525_0008|orf6.5047|CA2953|CaO19.5855|CaO19.13277	Predicted ORF in Assemblies 19, 20 and 21; non-periodic mRNA expression; predicted, conserved MBF binding sites upstream of G1/S-regulated genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	862501	863688	-	orf19.5856	862501	863688	1	863688	862501	863515	862553		orf19.13278|IPF21237.1|IPF10685.2|Contig4-2525_0011|orf6.5048|CA2954|CaO19.13278|CaO19.5856|IPF10685	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	862854	863255	+	ntar_600	862854	863255	1	862854	863255	862854	863063			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	863841	865201	+	orf19.5857	863841	865201	1	863841	865201	864047	865081		orf19.13279|IPF21235.1|IPF15201.2|Contig4-2168_0001|orf6.5049|CA2955|CaO19.5857|CaO19.13279|IPF15201	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	865077	865734	-	orf19.5858	865077	865734	1	865734	865077	865680	865144	EGD2	orf19.13280|IPF21270.1|IPF15200.1|Contig4-2168_0002|orf6.5050|CA2956|CaO19.5858|CaO19.13280	Predicted ORF in Assemblies 19, 20 and 21; soluble protein in hyphae; macrophage/pseudohyphal-induced; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	866094	866444	+	ntar_601	866094	866444	1	866094	866444					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	867155	868735	+	orf19.5859	867155	868735	1	867155	868735	867155	868735	DAL8	orf19.13281|IPF21202.1|IPF8598.2|Contig4-1908_0004|orf6.5051|CA2957|DAL53|CaO19.5859	Putative allantoate permease; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	867209	867768	-	ntar_602	867209	867768	1	867768	867209	867510	867229			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	869598	870084	+	orf19.5860	869598	870084	1	869598	870084	869680	870084		orf19.13282|orf6.5052|CaO19.13282|CaO19.5860	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	870370	871746	+	orf19.5861	870370	871746	1	870370	871746	870661	871476	KRE9	orf19.13283|IPF21251.1|IPF8595.2|Contig4-2845_0003|orf6.5053|CA2958|CaO19.5861|CaO19.13283	Protein of beta-1,6-glucan biosynthesis; required for serum-induced hyphal growth; required for efficient utilization of galactose and for growth on glucose; similar to S. cerevisiae Kre9p and Knh1p; O-glycosylated by Pmt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	871922	872608	+	orf19.5861.1	871922	872608	1	871922	872608	872170	872460			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	872676	874214	+	orf19.5862	872676	874214	1	872676	874214	872760	874016		orf19.13284|IPF21223.1|IPF8591.1|Contig4-2845_0007|orf6.5054|CA2959|AFP99|CaO19.5862|CaO19.13284|IPF8591	Protein described as related to arginases; downregulated upon adherence to polystyrene; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	874905	875423	+	orf19.5863	874905	875423	1	874905	875423	874905	875423		orf19.13285|IPF21267.1|IPF8590.1|Contig4-2845_0009|orf6.5055|CA2960|CaO19.5863|IPF8590	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	875534	877474	-	orf19.5864	875534	877474	1	877474	875534	877331	875694	URK1	orf19.13286|IPF21197.1|IPF8589.1|Contig4-2845_0010|Contig4-2845_0011|orf6.5056|CA2961|CaO19.5864|CaO19.13286	Protein described as similar to uridine kinase; transcription is downregulated in response to treatment with ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	877575	880216	+	orf19.5865	877575	880216	1	877575	880216	877619	880216		orf19.13287|IPF21159.1|IPF8587.2|Contig4-2845_0013|orf6.1040|orf6.5057|CA2962|PRP2|CaO19.13287|CaO19.5865	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr3	881431	881754	-	orf19.5866	881431	881754	1	881754	881431	881754	881431		orf19.13288|IPF21337.1|IPF27893.1|orf6.1041|orf6.5058|CaO19.5866	[NOT TRANSCRIBED?] Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	882603	884635	+	orf19.5867	882603	884635	1	882603	884635	883133	884209	WSC1	orf19.13289|IPF15153.1|IPF8580.2|Contig4-2845_0017|orf6.1042|orf6.5059|CA0274|CaO19.5867|WSC3|IPF15153|CA0244|IPF19082|IPF19082.1	Protein described as a cell wall component; increased mRNA abundance observed in cyr1 homozygous null mutant (yeast-form or hyphal cells) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	885058	886908	+	orf19.5869	885058	886908	2	885058|885616	885326|886908	885309	886872		orf19.13290|IPF18047.2|IPF15266.1|Contig4-1864_0002|orf6.9168|orf6.970|CA0243|BSD2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	887034	888111	-	orf19.5870	887034	888111	2	888111|887962	888034|887034	888048	887093	CTP1	orf19.13291|IPF18048.1|IPF15267.1|Contig4-1864_0004|orf6.9167|orf6.969|CA6166|CTP1.3f	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; amphotericin B repressed, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	890972	893083	-	orf19.5871	890972	893083	1	893083	890972	893062	890972		orf19.13292|orf19.13293|orf6.774|IPF19844.2|IPF21275.1|IPF14343.2|IPF14342.2|Contig4-3084_0009|Contig4-3084_0010|Contig4-3084_0011|orf6.9166|orf6.9165|CA6165|CA6164|orf19.5872|SNF5.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr3	893256	897858	-	orf19.5873	893256	897858	1	897858	893256	897766	893354	POL1	orf19.13294|IPF21292.1|IPF1832.2|Contig4-3084_0013|orf6.9164|CA6163|CaO19.13294|CaO19.5873	Protein described as DNA directed DNA polymerase alpha; RNA abundance regulated by cell cycle, tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	898214	899104	-	orf19.5874	898214	899104	1	899104	898214	899104	898214		orf19.13295|IPF21240.1|IPF1833.2|Contig4-3084_0014|orf6.9163|CA6162|CaO19.5874|CaO19.13295|IPF1833	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	899568	900556	+	orf19.5875	899568	900556	1	899568	900556	899622	900482	VAM3	orf19.13296|IPF21246.1|IPF1834.2|Contig4-3084_0015|orf6.9162|CA6161|CaO19.13296|PEP12|CaO19.5875|IPF1834	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	900396	901608	-	orf19.5876	900396	901608	2	901608|901010	901074|900396	901086	900631		orf19.13297|IPF21273.1|IPF1835.1|Contig4-3084_0016|orf6.9161|CA6160|CaO19.13297|CaO19.5876|IPF1835	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	901418	901620	+	ntar_603	901418	901620	1	901418	901620	901420	901569			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	901721	904148	+	orf19.5877	901721	904148	1	901721	904148	901890	903368	ATF1	orf19.13298|IPF21208.1|IPF1837.2|Contig4-3084_0018|orf6.9160|CA6159|CaO19.5877|CaO19.13298|IPF1837	Putative alcohol acetyltransferase; caspofungin repressed; expression depends on Tac1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	903496	904465	-	orf19.5879	903496	904465	1	904465	903496	904465	903572		orf19.13300|IPF21243.1|IPF1839.2|Contig4-3084_0019|orf6.9158|CA6158|AYR3|CaO19.5879|CaO19.13300|IPF1839	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	904930	905095	-	ntar_604	904930	905095	1	905095	904930					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	905204	907648	+	orf19.5880	905204	907648	1	905204	907648	905228	907534		orf19.13301|orf19.13302|IPF21249.1|IPF21205.1|IPF1844.1|IPF1841.1|Contig4-3084_0022|Contig4-3084_0024|orf6.9156|orf6.9157|CA6157|CA6156|orf19.5881|GEF1.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	907392	911008	-	orf19.5884	907392	911008	1	911008	907392	910944	907582		orf19.13305|IPF21326.1|IPF1846.1|Contig4-3084_0026|orf6.9153|CA6155|URB2|CaO19.13305|CaO19.5884|IPF1846	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	911136	911768	-	orf19.5885	911136	911768	1	911768	911136	911645	911265		orf19.13306|IPF21311.1|IPF1848.1|Contig4-3084_0029|orf6.9152|CA6154|SNU13|CaO19.13306|CaO19.5885|IPF1848	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	912072	913213	+	orf19.5886	912072	913213	2	912072|912446	912147|913213	912134	912914	CUP5	orf19.13307|IPF21283.1|IPF1849.1|Contig4-3084_0032|orf6.9151|CA6153	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	913051	915578	-	orf19.5887	913051	915578	1	915578	913051	915538	913217	NUP85	orf19.13308|IPF21170.1|IPF1850.1|Contig4-3084_0033|orf6.9150|CA6152|CaO19.5887|CaO19.13308	Protein not essential for viability; similar to S. cerevisiae Nup85p, which is a subunit of the nuclear pore complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	915666	919198	-	orf19.5890	915666	919198	1	919198	915666	919036	915701		orf19.13311|IPF21331.1|IPF1853.1|Contig4-3084_0036|orf6.9147|CA6151|CaO19.13311|CaO19.5890|IPF1853	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	919451	922454	+	orf19.5892	919451	922454	1	919451	922454	919710	922394		orf19.13310|orf19.13312|orf19.13313|IPF21155.1|IPF1857.2|Contig4-3084_0038|Contig4-3084_0040|Contig4-3084_0041|orf6.9148|orf6.9146|orf6.9145|CA6150|orf19.5889|orf19.5891|IPF1857	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	922659	923825	+	orf19.5893	922659	923825	2	922659|922939	922769|923825	922721	923531	RIP1	orf19.13314|orf6.9144|IPF21263.1|IPF1859.1|Contig4-3084_0044|CA6149	Protein described as subunit of ubiquinol cytochrome c-reductase; transcriptionally regulated by iron; expression greater in high iron; alkaline downregulated; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	923829	925533	-	orf19.5894	923829	925533	2	925533|925041	925118|923829	925533	923829		orf19.13315|orf19.13316|IPF21290.1|IPF21225.1|IPF1862.1|IPF1861.2|Contig4-3084_0047|Contig4-3084_0048|orf6.9143|orf6.9142|CA6148|CA6147|orf19.5895|IPF1862.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	925735	926574	-	orf19.5896	925735	926574	1	926574	925735	926574	925735		orf19.13317|IPF21247.1|IPF1863.1|orf6.9141|CA6146|CaO19.5896|CaO19.13317|IPF1863	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	927405	930577	+	orf19.5897	927405	930577	1	927405	930577	927454	930447		orf19.13318|IPF21351.1|IPF1869.1|Contig4-2395_0003|Contig4-2395_0004|orf6.9140|CA6145|CaO19.5897|CaO19.13318|IPF1869	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	930933	934541	+	orf19.5901	930933	934541	1	930933	934541	931122	934415	PKC1	orf19.13322|IPF21335.1|IPF1872.1|Contig4-2395_0002|Contig4-2874_0014|orf6.9136|CA6144|CaO19.13322|CaO19.5901	Protein kinase C; functional homolog of S. cerevisiae Pkc1p; mutant has abnormal yeast-form cell morphology and increased cell lysis; activated by phosphatidylserine; target of antifungal, cercosporamide; R400P mutant is activated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	934549	935511	-	orf19.5902	934549	935511	1	935511	934549	935511	934549	RAS2	orf19.13323|IPF21239.1|IPF1873.1|Contig4-2874_0002|orf6.9135|RLP1|CA6143|CaO19.5902|CaO19.13323|IPF1873	Protein similar to S. cerevisiae Ras2p, which activates adenylate cyclase and is involved in pseudohyphal growth of S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr3	938889	941275	+	orf19.5903	938889	941275	1	938889	941275	939258	940910	RAX1	orf19.13324|IPF21201.1|IPF1879.1|Contig4-2874_0009|Contig4-2874_0010|orf6.9134|CA6142|CaO19.5903|CaO19.13324|IPF1879	Protein described as having a possible role in bud site selection; hyphal-induced expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	941046	942581	-	orf19.5904	941046	942581	2	942581|941958	942395|941046	942396	941388	RPL19A	orf19.13325|IPF21264.1|IPF1881.1|RPL19B|Contig4-2874_0011|orf6.9133|CA6141|RPL19A.3	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	942847	943557	+	orf19.5905	942847	943557	1	942847	943557	942961	943263		orf19.13326|IPF21349.1|IPF1882.1|Contig4-2874_0012|orf6.9132|CA6140|CaO19.13326|CaO19.5905|IPF1882	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	943356	945300	-	orf19.5906	943356	945300	1	945300	943356	945232	943526	ADE2	orf19.13327|IPF21193.1|IPF1883.1|Contig4-2874_0013|orf6.9131|CA6139|CaO19.5906|CaO19.13327	Phosphoribosylaminoimadazole carboxylase; enzyme of adenine biosynthesis; required for wild-type growth and virulence in immunosuppressed mouse systemic infection; not induced during GCN response, in contrast to S. cerevisiae ortholog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	949718	952120	-	orf19.5908	949718	952120	1	952120	949718	952103	949872	TEC1	orf19.13329|IPF21178.1|IPF4351.1|Contig4-3037_0020|orf6.9129|CA6138|CaO19.13329|CaO19.5908|IPF4351	TEA/ATTS transcription factor involved in regulation of hypha-specific genes; required for wild-type biofilm formation; regulates BCR1; directly transcriptionally regulated by Cph2p under some growth conditions; alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	957555	960537	-	orf19.5910	957555	960537	1	960537	957555	960451	958172		orf19.13331|IPF21173.1|IPF4356.2|Contig4-3037_0012|orf6.9127|CA6137|NTO1|CaO19.13331|CaO19.5910|IPF4356	Predicted ORF in Assemblies 19, 20 and 21; induced upon low-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	960579	961958	-	orf19.5911	960579	961958	1	961958	960579	961927	960680	CMK1	orf19.13332|IPF21212.1|IPF4358.1|Contig4-3037_0009|orf6.9126|CA6135|CaO19.13332|CaO19.5911	Expression is regulated upon white-opaque switching; biochemically purified Ca2+/CaM-dependent kinase is soluble, cytosolic, monomeric, and serine-autophosphorylated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	962541	965892	+	orf19.5912	962541	965892	1	962541	965892	962574	965774	MAK21	orf19.13333|IPF21339.1|IPF4362.1|Contig4-3037_0008|orf6.9125|CA6134|CaO19.5912|CaO19.13333	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	965866	967917	-	orf19.5915	965866	967917	1	967917	965866	967917	965911		orf19.13336|orf19.13337|IPF21222.1|IPF21257.1|IPF4364.1|IPF4365.1|Contig4-3037_0006|Contig4-3037_0007|orf6.9122|orf6.9121|CA6133|CA6132|orf19.5916|DUR35.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	968867	970659	-	orf19.5917	968867	970659	1	970659	968867	970366	969056	STP3	orf19.13338|IPF21221.1|IPF4369.1|STP1|Contig4-3037_0004|orf6.9120|CA6131|CaO19.13338|CaO19.5917|IPF4369	Transcription factor; regulates SAP2, OPT1 expression and thereby protein catabolism for nitrogen source; activated via amino-acid-induced proteolytic processing; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	973820	975666	+	orf19.5917.3	973820	975666	2	973820|975060	974156|975666	973884	975470		IPF21354.1|IPF21308.1|IPF157.1|IPF155.1|Contig4-2225_0003|Contig4-2225_0007|CA6130|orf19.5917.5|YRA1|CA6129|YRA1.exon2	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	975556	975861	-	orf19.5918	975556	975861	1	975861	975556	975861	975556		orf19.13339|IPF21342.1|IPF27895.1|orf6.9119|CaO19.5918|CaO19.13339	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	976398	978669	+	orf19.5919	976398	978669	1	976398	978669	976573	978462	MEA1	orf19.13340|IPF21186.1|IPF152.2|orf6.9118|CA6128|CaO19.5919|CaO19.13340|IPF152	Protein similar to A. nidulans MesA, which is involved in localization of actin cables [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	978471	979151	-	orf19.5920	978471	979151	1	979151	978471	979049	978639		orf19.13341|IPF21282.1|IPF151.1|orf6.9117|CaO19.5920|CaO19.13341	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	980300	981819	+	orf19.5921	980300	981819	1	980300	981819	980600	981691		orf19.13342|IPF21230.1|IPF149.1|Contig4-2340_0001|orf6.9116|CA6127|PMP47|CaO19.5921|CaO19.13342|IPF149	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	985038	988518	+	orf19.5924	985038	988518	1	985038	988518	985126	988518		ZCF31|orf19.13345|IPF21328.1|IPF143.2|Contig4-2867_0017|orf6.9113|CA6126|CaO19.5924|CaO19.13345|IPF143	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr3	989009	990453	+	orf19.5925	989009	990453	1	989009	990453	989158	990291		orf19.13346|IPF21228.1|IPF138.1|Contig4-2867_0014|orf6.9112|CA6125|CaO19.5925|CaO19.13346|IPF138	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	990305	991453	-	orf19.5926	990305	991453	1	991453	990305	991361	990408	ARG11	orf19.13347|IPF18052.2|IPF137.1|Contig4-2867_0013|orf6.9111|CA6124|CaO19.13347|ORT1|CaO19.5926	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	991525	992785	-	orf19.5927	991525	992785	2	992785|992276	992652|991525	992664	991861	RPS15	orf19.13348|IPF21299.1|IPF135.1|Contig4-2867_0011|Contig4-2867_0012|orf6.9110|CA6123|RPS15.3	Putative ribosomal protein; macrophage/pseudohyphal-induced after 16 h; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	993009	993567	+	orf19.5928	993009	993567	1	993009	993567	993121	993456	RPP2B	orf19.13349|RP2B|CARP2B|IPF21317.1|IPF134.1|RPL45|Contig4-2867_0010|orf6.9109|CA6122|CaO19.13349|CaO19.5928	Conserved acidic ribosomal protein, likely to be involved in regulation of translation elongation; interacts with Rpp1Ap; one of four similar C. albicans ribosomal proteins (Rpp1Ap, Rpp1Bp, Rpp2Ap, Rpp2Bp); macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	993472	994670	-	orf19.5929	993472	994670	1	994670	993472	994596	993574		orf19.13350|IPF21236.1|IPF133.1|Contig4-2867_0009|orf6.9108|CA6121|CaO19.5929|CaO19.13350|IPF33	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	994773	995952	+	orf19.5930	994773	995952	1	994773	995952	994833	995933		orf19.13351|IPF21232.1|IPF132.1|Contig4-2867_0006|Contig4-2867_0007|orf6.9107|CA6120|CaO19.13351|NUP42|CaO19.5930|IPF132	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	996072	997513	+	orf19.5931	996072	997513	1	996072	997513	996093	996983		orf19.13352|IPF21244.1|IPF128.1|Contig4-2867_0004|orf6.9106|CA6119|CaO19.13352|ARV1|CaO19.5931	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	996917	999604	-	orf19.5932	996917	999604	1	999604	996917	999577	996980		orf19.13353|IPF21160.1|IPF126.2|Contig4-2867_0003|orf6.9105|CA6118|CaO19.13353|CaO19.5932|IPF126	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1000200	1001627	-	orf19.5933	1000200	1001627	1	1001627	1000200	1001627	1000200		orf19.13354|IPF21209.1|IPF122.1|Contig4-2867_0002|orf6.9104|CA6117|CaO19.5933|CaO19.13354|IPF122	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon benomyl treatment; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1004299	1006357	-	orf19.5934	1004299	1006357	1	1006357	1004299	1006283	1004394		orf19.13355|IPF21187.1|IPF116.2|Contig4-3022_0019|Contig4-3022_0020|orf6.9103|CA6116|TOP3|CaO19.13355|CaO19.5934	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1006896	1008892	+	orf19.5935	1006896	1008892	1	1006896	1008892	1006978	1008810		orf19.13356|IPF21185.1|IPF112.1|Contig4-3022_0017|orf6.9102|CA6115|CaO19.5935|CaO19.13356|IPF112	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1008827	1015039	-	orf19.5938	1008827	1015039	1	1015039	1008827	1014997	1008941	SEN1	orf19.13359|IPF21262.1|IPF110.1|Contig4-3022_0012|Contig4-3022_0013|Contig4-3022_0015|orf6.9099|CA6114|CaO19.13359|CaO19.5938	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1015343	1017555	-	orf19.5940	1015343	1017555	1	1017555	1015343	1017493	1015343		ZCF32|orf19.13361|IPF21177.1|IPF100.1|Contig4-3022_0010|Contig4-3022_0011|orf6.9097|CA6113|CaO19.5940|CaO19.13361|IPF100.3f|IPF100.3	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1017525	1018034	+	ntar_605	1017525	1018034	1	1017525	1018034	1017525	1017647			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1017807	1019239	-	orf19.5941	1017807	1019239	1	1019239	1017807	1019201	1018164		orf19.13362|IPF21234.1|IPF97.1|Contig4-3022_0009|orf6.9096|CA6112|ERV41|CaO19.5941|CaO19.13362|IPF97	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1019451	1021011	+	orf19.5942	1019451	1021011	1	1019451	1021011	1019512	1020960		orf19.13363|IPF21203.1|IPF96.1|Contig4-3022_0008|orf6.9095|CA6111|CaO19.5942|CaO19.13363|IPF96	Protein described as a zinc finger protein similar to S. cerevisiae Itt1p; downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1020848	1022827	-	orf19.5943	1020848	1022827	1	1022827	1020848	1022772	1021006		orf19.13364|IPF21194.1|IPF91.2|Contig4-3022_0006|Contig4-3022_0007|orf6.9094|CA6110|PEX28|CaO19.13364|CaO19.5943|IPF91	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1023064	1024680	-	orf19.5943.1	1023064	1024680	2	1024680|1024029	1024504|1023064	1024521	1023244		IPF21254.1|IPF89.1|Contig4-3022_0004|CA6109|IPF89.3f|IPF89.3	Putative protein of unknown function, transcription is upregulated in an RHE model of oral candidiasis; ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=F]
Ca21chr3	1024785	1030501	-	orf19.5947	1024785	1030501	1	1030501	1024785	1030396	1024877	SEC7	orf19.13368|IPF21269.1|IPF85.1|orf6.9090|CA6108|CaO19.13368|CaO19.5947	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to Brefeldin A; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1030652	1036439	-	orf19.5949	1030652	1036439	1	1036439	1030652	1036390	1030736	FAS2	orf19.13370|orf19.13372|IPF21167.1|IPF21281.1|IPF21154.1|IPF76.2|IPF77.2|IPF80.2|Contig4-3087_0034|Contig4-3087_0035|Contig4-3087_0037|orf6.9086|orf6.9089|CA6107|CA6105|orf19.5951|FAS2.3f	Alpha subunit of fatty-acid synthase; required for virulence in mouse systemic infection and rat oropharyngeal infection models; regulated by Efg1p; fluconazole-induced; amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1036618	1038735	+	ntar_606	1036618	1038735	1	1036618	1038735	1037175	1037363			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1037369	1038685	-	orf19.5952	1037369	1038685	1	1038685	1037369	1038685	1037369		orf19.13373|IPF21220.1|IPF75.1|Contig4-3087_0032|orf6.9085|CA6104|CaO19.5952|CaO19.13373|IPF65	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 null mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr3	1039070	1039154	-	tk(cuu)2	1039070	1039154	2	1039154|1039105	1039118|1039070				tK(CUU)2.2	tRNA-Lys predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1040421	1043097	+	orf19.5953	1040421	1043097	1	1040421	1043097	1041441	1042778		orf19.13374|IPF21219.1|IPF72.1|Contig4-3087_0031|orf6.9084|CA6103|SFP1|CaO19.5953|CaO19.13374	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1043687	1045307	+	orf19.5954	1043687	1045307	2	1043687|1044706	1044617|1045307	1043687	1045307		orf19.13375|IPF21242.1|IPF21261.1|IPF70.1|IPF68.1|Contig4-3087_0026|Contig4-3087_0028|Contig4-3087_0029|orf6.9083|CA6102|SPO70.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1045609	1046870	+	orf19.5956	1045609	1046870	1	1045609	1046870	1045674	1046531		orf19.13377|IPF21250.1|IPF66.1|Contig4-3087_0025|orf6.9081|CA6100|CaO19.13377|PIN3|CaO19.5956|IPF66	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1047997	1052496	+	orf19.5958	1047997	1052496	1	1047997	1052496	1047997	1052496	CDR2	orf19.13379|IPF21286.1|IPF63.1|Contig4-3087_0024|CA6099|CaO19.13379|CaO19.5958|orf6.9079	Multidrug transporter, ATP-binding cassette (ABC) superfamily; transports phospholipids, in-to-out direction; low mRNA level; overexpressed in azole-resistant isolates; expression confers multidrug resistance to S. cerevisiae pdr5 mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr3	1052819	1055498	+	orf19.5959	1052819	1055498	1	1052819	1055498	1052846	1055374	NOP14	orf19.13380|IPF21162.1|IPF61.1|Contig4-3087_0022|orf6.9078|CA6098|CaO19.13380|CaO19.5959|IPF61	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); heterozygous null mutant exhibits resistance to parnafungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1055846	1057459	-	orf19.5960	1055846	1057459	1	1057459	1055846	1057274	1056762		orf19.13381|IPF21265.1|IPF59.1|Contig4-3087_0018|orf6.9077|CA6097|CaO19.5960|NCE102|CaO19.13381	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1056000	1056348	+	ntar_607	1056000	1056348	1	1056000	1056348					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1058628	1058883	+	ntar_608	1058628	1058883	1	1058628	1058883					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1059394	1060493	-	orf19.5961	1059394	1060493	1	1060493	1059394	1060431	1059682		orf19.13382|IPF21255.1|IPF56.1|Contig4-3087_0009|orf6.9076|CA6096|CaO19.5961|NAS6|CaO19.13382|IPF56	Predicted ORF in Assemblies 19, 20 and 21; described as similar to S. cerevisiae Nas6p proteasome component; induced upon adherence to polystyrene; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1060730	1063146	-	orf19.5962	1060730	1063146	1	1063146	1060730	1063077	1060831	SNF3	orf19.13383|GSP1|HGT4|IPF21175.1|IPF55.1|Contig4-3087_0008|orf6.9075|CA6095|CaO19.5962|CaO19.13383	Glucose and galactose sensor; fermentation, filamentation, virulence roles; in 20-member C. albicans glucose transporter family, extended C terminus; high-glucose repressed; induced in macrophage, repressed in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1064202	1065528	+	orf19.5963	1064202	1065528	1	1064202	1065528	1064250	1065299		orf19.13384|IPF21231.1|IPF53.2|Contig4-3087_0005|Contig4-3087_0007|orf6.9074|CA6094|CaO19.13384|CaO19.5963|IPF53	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1065460	1065710	-	ntar_609	1065460	1065710	1	1065710	1065460					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1065840	1067148	+	orf19.5964	1065840	1067148	1	1065840	1067148	1066237	1066782	ARF2	orf19.13385|IPF21268.1|IPF50.2|Contig4-3087_0003|orf6.9073|CA6093|CaO19.5964|CaO19.13385|ARF22	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to Brefeldin A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1067773	1068982	+	orf19.5964.2	1067773	1068982	2	1067773|1068391	1067950|1068982	1067948	1068750	RPL35	IPF21319.1|IPF47.1|Contig4-3087_0001|CA6092|RPL35.3	Protein described as a ribosomal protein; downregulation correlates with clinical development of fluconazole resistance; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1068947	1072393	-	orf19.5965	1068947	1072393	1	1072393	1068947	1072236	1069009		orf19.13386|IPF21338.1|IPF46.2|Contig4-3042_0001|Contig4-3042_0002|Contig4-3042_0003|orf6.9072|CA6091|CaO19.13386|UFD2|CaO19.5965	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1072432	1073031	+	orf19.5966	1072432	1073031	1	1072432	1073031	1072432	1072773		orf19.13387|IPF21294.1|IPF27869.1|orf6.9071|CaO19.5966|CaO19.13387	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1073061	1074620	+	orf19.5967	1073061	1074620	1	1073061	1074620	1073192	1074424	FGR44	orf19.13388|IPF21226.1|IPF44.1|Contig4-3042_0010|orf6.9070|CA6090|CaO19.5967|CaO19.13388|IPF44	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1074751	1074890	-	ntar_610	1074751	1074890	1	1074890	1074751					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1074952	1075884	+	orf19.5968	1074952	1075884	1	1074952	1075884	1075122	1075733	RDI1	orf19.13389|IPF21259.1|IPF40.1|Contig4-3042_0013|orf6.9069|CA6089|CaO19.5968|CaO19.13389	Protein similar to S. cerevisiae Rdi1p, an inhibitor of Rho-GDP dissociation; transposon mutation affects filamentous growth; farnesol-, filament-induced; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1075922	1078794	-	orf19.5970	1075922	1078794	1	1078794	1075922	1078753	1076165		orf19.13391|IPF21158.1|IPF37.1|HPR5|Contig4-3042_0014|Contig4-3042_0015|orf6.9067|CA6088|CaO19.13391|CaO19.5970	Protein described as a DNA repair helicase; transcriptionally induced by interaction with macrophage; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1078914	1080849	+	orf19.5971	1078914	1080849	1	1078914	1080849	1078992	1080836		orf19.13392|IPF21189.1|IPF36.1|Contig4-3042_0016|orf6.9066|CA6087|CaO19.5971|CaO19.13392|YHV1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1081029	1082159	+	orf19.5973	1081029	1082159	1	1081029	1082159	1081111	1082022		orf19.13394|IPF21245.1|IPF33.1|Contig4-3042_0017|orf6.9064|CA6086|CaO19.13394|PHB2|CaO19.5973	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1082022	1085202	-	orf19.5974	1082022	1085202	1	1085202	1082022	1085083	1082225	ATG9	orf19.13395|IPF21152.1|IPF32.2|Contig4-3042_0018|orf6.9063|CA6085|CaO19.13395|CaO19.5974|IPF32	Protein similar to S. cerevisiae Atg9p, required for an early step in autophagy; required for cytoplasm to vacuole trafficking of Lap41p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1087657	1088517	+	orf19.5975	1087657	1088517	1	1087657	1088517	1087657	1088517		orf19.13396|IPF21248.1|IPF29.1|Contig4-3042_0024|orf6.9062|CA6084|CaO19.5975|CaO19.13396|IPF29	Putative transcription factor with zinc finger DNA-binding motif; fluconazole-downregulated; expression regulated during planktonic growth; increased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1088861	1089875	-	ntar_611	1088861	1089875	1	1089875	1088861	1089017	1088892			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1089937	1091345	+	orf19.5976	1089937	1091345	1	1089937	1091345	1090005	1091345		orf19.13397|IPF21218.1|IPF26.1|IPF26|Contig4-3042_0027|orf6.9061|CA6083|CaO19.5976|CaO19.13397	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment, in azole-resistant strains that overexpress CDR1 and CDR2 or MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1091394	1092719	+	orf19.5977	1091394	1092719	1	1091394	1092719	1091394	1092719	CEM1	orf19.13398|IPF21215.1|IPF25.1|Contig4-3042_0029|orf6.9060|CA6082|CaO19.5977|CaO19.13398	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Cem1p, which is an acyl carrier protein involved in fatty acid biosynthesis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1093298	1094512	+	orf19.5978	1093298	1094512	1	1093298	1094512	1093298	1094512		orf19.13399|IPF21217.1|IPF24.1|Contig4-3042_0030|Contig4-3042_0031|orf6.9059|CA6081|FZD6|CaO19.13399|CaO19.5978|IPF24	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1093507	1094400	-	ntar_612	1093507	1094400	1	1094400	1093507	1094400	1094083			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1094419	1096285	-	orf19.5980	1094419	1096285	1	1096285	1094419	1096285	1094555		orf19.13401|IPF21196.1|IPF21.1|Contig4-3042_0033|orf6.9057|CA6080|CaO19.5980|CaO19.13401|IPF21	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1096665	1097777	-	orf19.5982	1096665	1097777	2	1097777|1097113	1097573|1096665	1097684	1096665	RPL18	orf19.13403|IPF21165.1|IPF21278.1|IPF18.1|IPF20.1|RPL18B|Contig4-3042_0035|orf6.9055|orf19.5981.1|CA6079|RPL18.exon2	Predicted ribosomal protein; Plc1p-regulated, Tbf1p-activated; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1098005	1099176	+	orf19.5984	1098005	1099176	1	1098005	1099176	1098034	1099035		orf19.13405|IPF21238.1|IPF16.1|Contig4-2427_0007|orf6.9053|CA6077|CaO19.13405|CaO19.5984|IPF16	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1098976	1099781	-	orf19.5985	1098976	1099781	2	1099781|1099654	1099709|1098976	1099725	1099114		orf19.13406|IPF21271.1|IPF15.1|Contig4-2427_0006|orf6.9052|CA6076|PAC10|PAC10.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1099944	1101064	-	orf19.5986	1099944	1101064	1	1101064	1099944	1101010	1099946	THI4	orf19.13407|IPF21233.1|IPF14.1|Contig4-2427_0005|orf6.9051|CA6075|CaO19.13407|CaO19.5986	Protein repressed during the mating process; fungal-specific (no human or murine homolog); protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1101244	1102834	-	orf19.5987	1101244	1102834	1	1102834	1101244	1102834	1101416		orf19.13408|IPF21213.1|IPF11.1|Contig4-2427_0004|orf6.9050|CA6074|CaO19.13408|CaO19.5987|IPF11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	1103379	1105025	+	orf19.5989	1103379	1105025	1	1103379	1105025	1103545	1104972		orf19.13410|IPF21211.1|IPF9.2|Contig4-2512_0006|orf6.9048|CA6073|HRP1|CaO19.13410|CaO19.5989	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1105020	1107812	-	orf19.5991	1105020	1107812	1	1107812	1105020	1107793	1105067		orf19.13412|IPF21153.1|IPF6.1|Contig4-2512_0001|orf6.9046|CA6072|DBP10|CaO19.5991|CaO19.13412	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1108041	1108311	+	ntar_613	1108041	1108311	1	1108041	1108311	1108041	1108217			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1118600	1120245	+	orf19.5992	1118600	1120245	1	1118600	1120245	1118835	1120175	WOR2	orf19.13413|IPF21214.1|IPF4835.1|Contig4-2837_0008|orf6.9045|CA6071|ZCF33|CaO19.13413|CaO19.5992|IPF4835	Transcriptional regulator of white-opaque switching; required for maintenance of opaque state [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1121988	1122247	+	ntar_614	1121988	1122247	1	1121988	1122247					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1122211	1122426	-	ntar_615	1122211	1122426	1	1122426	1122211					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1122436	1122731	+	ntar_616	1122436	1122731	1	1122436	1122731					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1123341	1123794	-	ntar_617	1123341	1123794	1	1123794	1123341					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1124932	1125309	-	ntar_618	1124932	1125309	1	1125309	1124932	1125276	1125139			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1126211	1127520	+	orf19.5994	1126211	1127520	1	1126211	1127520	1126578	1127132	RHB1	orf19.13415|IPF21266.1|IPF4842.1|Contig4-2771_0004|orf6.9043|CA6070|CaO19.5994|CaO19.13415|IPF4842	Putative small G protein from the Ras superfamily involved in cell wall integrity and control of filamentous growth under nitrogen starvation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1127390	1128973	-	orf19.5995	1127390	1128973	1	1128973	1127390	1128919	1127573	MCA1	orf19.13416|IPF21216.1|IPF4847.1|Contig4-2771_0005|orf6.9042|CA6069|CaO19.5995|CaO19.13416|IPF4847	Putative cysteine protease with similarity to S. cerevisiae Mca1p; has a role in apoptotic cell death upon H2O2 treatment; fungal-specific (no human or murine homolog); farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1129609	1130004	-	ntar_619	1129609	1130004	1	1130004	1129609	1129887	1129750			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1130330	1131425	+	orf19.5996.1	1130330	1131425	2	1130330|1130749	1130381|1131425	1130362	1131166	RPS19A	IPF21287.1|IPF4849.1|Contig4-2771_0008|CA6068|RPS19A.3	Putative ribosomal protein; ORF Predicted by Annotation Working Group; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1131321	1143881	-	orf19.5999	1131321	1143881	1	1143881	1131321	1143881	1131396	DYN1	orf19.13420|IPF21224.1|IPF19819.1|Contig4-2771_0009|orf6.9038|CA6067|CaO19.13420|CaO19.5999	Dynein heavy chain; dynein is a motor protein that moves toward the microtubule minus end; required for wild-type yeast-form cell separation, spindle positioning, nuclear migration, hyphal growth; transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	1146080	1150790	+	orf19.6000	1146080	1150790	1	1146080	1150790	1146155	1150660	CDR1	orf19.13421|IPF21285.1|IPF9739.2|Contig4-1997_0005|CA6066|CaO19.6000|CaO19.13421|orf6.9037	Multidrug transporter of ATP-binding cassette (ABC) superfamily; transports phospholipids in an in-to-out direction; transcription induced by beta-estradiol, progesterone, corticosteroid, or cholesterol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1151761	1152957	+	orf19.6001	1151761	1152957	1	1151761	1152957	1151761	1152957	SAP3	orf19.13422|IPF21229.1|IPF8313.1|Contig4-1997_0001|orf6.9036|CA6065|CaO19.6001|CaO19.13422	Secreted aspartyl proteinase; acts in utilization of protein as nitrogen source; virulence role in mouse, guinea pig systemic infection or rat vagina; regulated by growth phase; produced by opaque phase cells; alpha-pheromone repressed [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1151852	1152169	-	ntar_620	1151852	1152169	1	1152169	1151852	1152169	1152023			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1153151	1154108	-	orf19.6002	1153151	1154108	1	1154108	1153151	1154044	1153256	RPL8B	orf19.13423|RPL81|IPF21253.1|IPF8312.2|RPL8B-1|Contig4-1997_0002|orf6.9035|CA6064|CaO19.6002|CaO19.13423	Predicted ribosomal protein; transcription is regulated upon yeast-hyphal switch; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1154319	1156379	-	orf19.6003	1154319	1156379	1	1156379	1154319	1156318	1154531		orf19.13424|IPF21190.1|IPF8311.1|Contig4-1997_0004|Contig4-2656_0014|orf6.9034|CA6063|CaO19.6003|CaO19.13424|IPF8311	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1156599	1157022	-	ntar_621	1156599	1157022	1	1157022	1156599	1157022	1156867			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1157561	1157884	-	ntar_622	1157561	1157884	1	1157884	1157561					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1157837	1158001	+	ntar_623	1157837	1158001	1	1157837	1158001					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1158445	1161017	-	orf19.6005	1158445	1161017	1	1161017	1158445	1160820	1158586	HGT5	orf19.13426|IPF21176.1|IPF8307.1|Contig4-2656_0009|orf6.9032|CA6062|CaO19.13426|STL98|CaO19.6005|IPF8307	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments, extended N terminus; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1161417	1163394	-	orf19.6007	1161417	1163394	1	1163394	1161417	1162682	1161621		orf19.13428|IPF21227.1|IPF8302.1|Contig4-2656_0006|orf6.9030|CA6061|CaO19.13428|CaO19.6007|IPF8302	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1163504	1164056	+	ntar_624	1163504	1164056	1	1163504	1164056					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1163889	1167091	-	orf19.6008	1163889	1167091	1	1167091	1163889	1166752	1163927		orf19.13429|IPF21151.1|IPF8301.2|Contig4-2656_0001|orf6.9029|CA6060|CaO19.6008|CaO19.13429|IPF8301	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1167962	1168303	+	ntar_625	1167962	1168303	1	1167962	1168303					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1168250	1170279	-	orf19.6966	1168250	1170279	1	1170279	1168250	1170279	1168411		IPF11120.1|Contig4-2580_0006|orf6.7712|CA5014|CaO19.6966|CKI1|IPF11120	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	1170684	1175074	+	orf19.6967	1170684	1175074	1	1170684	1175074	1171433	1174825	USO6	IPF11118.1|Contig4-2580_0004|orf6.7713|CA5015|CaO19.6967|IPF11118	Transcription is induced upon filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1177242	1177811	-	ntar_626	1177242	1177811	1	1177811	1177242					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1177418	1177815	+	ntar_627	1177418	1177815	1	1177418	1177815					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1178233	1181932	+	orf19.6968	1178233	1181932	1	1178233	1181932	1178348	1181809		IPF7561.2|Contig4-2973_0020|orf6.7714|CA5016|CaO19.6968|IPF7561	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1181828	1183020	-	orf19.6970	1181828	1183020	1	1183020	1181828	1182953	1181982		IPF7559|IPF7559.2|Contig4-2973_0019|orf6.7716|CA5017|CaO19.6970	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1183201	1184648	+	orf19.6971	1183201	1184648	1	1183201	1184648	1183259	1184611	DIE2	IPF7558.1|Contig4-2973_0017|orf6.7717|CA5018|CaO19.6971|IPF7558	Protein not essential for viability; similar to S. cerevisiae Die2p, which is dolichyl-phosphoglucose-dependent glucosyltransferase involved in protein N-glycosylation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1184578	1186719	-	orf19.6972	1184578	1186719	1	1186719	1184578	1186367	1184715	SMI1B	IPF7557.1|Contig4-2973_0016|orf6.7718|CA5019|SMI1|CaO19.6972|IPF7557	Protein of unknown function; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1186850	1191093	-	orf19.6973	1186850	1191093	1	1191093	1186850	1190748	1186972		IPF7556.1|Contig4-2973_0015|orf6.7719|CA5020|LON1|CaO19.6973|IPF7556	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1191826	1192587	-	ntar_628	1191826	1192587	1	1192587	1191826					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1192824	1194502	-	orf19.6975	1192824	1194502	2	1194502|1193832	1194224|1192824	1194313	1193137	YST1	IPF7549.1|RPS0A|Contig4-2973_0009|orf6.7721|CA5022|orf19.6975.1|CA5021|YST1.exon2	Ribosome-associated protein; antigenic in mouse; complements S. cerevisiae yst1 yst2 mutant; similar to laminin-binding proteins, but does not bind laminin; possible S/T phosphorylation, N-glycosylation, myristoylation, Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1194684	1195073	-	ntar_629	1194684	1195073	1	1195073	1194684	1194887	1194759			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1195202	1197393	+	orf19.6976	1195202	1197393	1	1195202	1197393	1195446	1197287		IPF7547.2|Contig4-2973_0006|orf6.7722|CA5023|CaO19.6976|IPF7547	Predicted membrane transporter; member of the proton coupled folate transporter/heme carrier protein (PCFT/HCP) family, major facilitator superfamily (MFS); virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1197349	1199306	-	orf19.6977	1197349	1199306	1	1199306	1197349	1199306	1197360	GPI1	IPF3009.2|orf6.7723|CA5024|CaO19.6977|IPF3009	Putative protein of GPI synthesis; expression is reduced in a fluconazole-resistant isolate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1199266	1199694	-	orf19.6978	1199266	1199694	1	1199694	1199266	1199595	1199266		IPF3008.1|Contig4-2646_0001|orf6.7724|CaO19.6978	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1201239	1204395	+	orf19.6979	1201239	1204395	2	1201239|1201775	1201419|1204395	1201853	1204195		IPF3003.1|Contig4-2646_0008|Contig4-2646_0009|orf6.7725|CA5025|CaO19.6979|AMI3	Predicted ORF in Assemblies 19, 20 and 21; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1204455	1204747	-	ntar_630	1204455	1204747	1	1204747	1204455					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1204745	1205209	+	ntar_631	1204745	1205209	1	1204745	1205209	1204745	1204879			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1205520	1207670	+	orf19.6980	1205520	1207670	1	1205520	1207670	1205811	1207568		IPF3001.1|Contig4-2646_0012|orf6.7726|CA5026|CaO19.6980|IPF3001	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1207816	1209777	+	orf19.6981	1207816	1209777	1	1207816	1209777	1207893	1209680		IPF2999.2|Contig4-2646_0013|orf6.7727|CA5027|CaO19.6981|IPF2999	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1209697	1211183	-	orf19.6982	1209697	1211183	1	1211183	1209697	1211105	1209816		IPF2998.1|Contig4-2116_0001|Contig4-2646_0014|orf6.7728|CA5028|CaO19.6982|IPF2998	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1215423	1216013	+	ntar_632	1215423	1216013	1	1215423	1216013					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1215930	1217629	-	orf19.6983	1215930	1217629	1	1217629	1215930	1217362	1216190		IPF2997.1|Contig4-2787_0006|orf6.7729|CA5029|CaO19.6983|IPF2997	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1222497	1222684	-	ntar_633	1222497	1222684	1	1222684	1222497					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1226517	1229144	+	orf19.6984	1226517	1229144	1	1226517	1229144	1226770	1229058		IPF2988.1|Contig4-2884_0009|Contig4-2884_0010|orf6.7730|CA5030|CaO19.6984|AVT42|IPF2988	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1229366	1232339	+	orf19.6985	1229366	1232339	1	1229366	1232339	1229454	1232156	TEA1	IPF20023.1|Contig4-2884_0008|orf6.7731|CA5031|CaO19.6985|IPF20023	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Tea1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1232602	1232675	-	tv(aac)5	1232602	1232675	1	1232675	1232602					tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1232691	1232764	-	tv(aac)6	1232691	1232764	1	1232764	1232691					tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1233575	1233830	+	snrnau6	1233575	1233830	1	1233575	1233830			SNR6		Highly conserved U6 small nuclear RNA involved in splicing; ortholog of S. cerevisiae SNR6; gene transcribed by RNA Pol III [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1233878	1236302	+	orf19.6986	1233878	1236302	1	1233878	1236302	1234027	1236234		IPF2982.1|Contig4-2884_0003|Contig4-2884_0004|orf6.7732|CA5032|MSB3|CaO19.6986|IPF2982	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1236260	1239217	-	orf19.6987	1236260	1239217	1	1239217	1236260	1239021	1236421	DNM1	IPF2980.1|Contig4-2884_0002|orf6.7733|CA5033|CaO19.6987	Putative protein of unknown function; ; transcription is upregulated in an RHE model of oral candidiasis; transcription is regulated by Nrg1p, Mig1p, and Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1239344	1239822	-	ntar_634	1239344	1239822	1	1239822	1239344	1239469	1239344			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1240090	1241678	+	orf19.6988	1240090	1241678	1	1240090	1241678	1240151	1241563		IPF4532.2|Contig4-2640_0001|Contig4-2640_0016|orf6.7734|CA5034|CaO19.6988|OST1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1241255	1241923	-	orf19.6989	1241255	1241923	1	1241923	1241255	1241879	1241556		IPF4531.1|Contig4-2640_0002|orf6.7735|CA5035|CSP14|CaO19.6989|IPF4531	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1241941	1243037	-	orf19.6990	1241941	1243037	1	1243037	1241941	1242796	1242005		IPF4530.1|Contig4-2640_0003|orf6.7736|CA5036|CaO19.6990|CPR52|CYP52	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1242028	1242443	+	ntar_635	1242028	1242443	1	1242028	1242443					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1243169	1244182	+	orf19.6991	1243169	1244182	1	1243169	1244182	1243216	1243860	PRE3	IPF4529.1|Contig4-2640_0005|orf6.7737|CA5037|CaO19.6991	Protein described as beta-1 subunit of proteasome; macrophage-induced protein; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1244977	1246777	+	orf19.6992	1244977	1246777	1	1244977	1246777	1245135	1246649		IPF4526.1|Contig4-2640_0010|orf6.7738|CA5038|CaO19.6992|QDR2	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1246713	1248734	-	orf19.6993	1246713	1248734	1	1248734	1246713	1248656	1246890	GAP2	orf6.7739|IPF4523.2|Contig4-2640_0013|CA5039|GAP13|CaO19.6993	Protein similar to amino acid permeases; ketoconazole, flucytosine repressed; induced by histidine, and induction requires Ssy1p; regulated by Nrg1p, Tup1p; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1250596	1251968	-	orf19.6994	1250596	1251968	1	1251968	1250596	1251798	1250689	BAT22	IPF4517.1|Contig4-2640_0015|orf6.7740|CA5040|CaO19.6994|BAT1	Protein described as a branched chain amino acid aminotransferase; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment), farnesol treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1252889	1253952	+	orf19.6995	1252889	1253952	1	1252889	1253952	1253107	1253952		IPF4516.1|Contig4-2915_0020|orf6.7741|CA5041|AFF4|CaO19.6995|FRP7	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr3	1254552	1256914	+	orf19.6996	1254552	1256914	1	1254552	1256914	1254651	1256708		IPF4514.1|Contig4-2915_0017|orf6.7742|CA5042|CaO19.6996|IPF4514	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1257418	1258260	+	orf19.6997	1257418	1258260	1	1257418	1258260	1257418	1258260		IPF4513.1|Contig4-2915_0016|orf6.7743|CA5043|AFF5|CaO19.6997|FRP4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1259057	1259910	+	orf19.6998	1259057	1259910	1	1259057	1259910	1259057	1259860	GTT1	IPF4511.1|Contig4-2915_0014|orf6.7744|CA5044|GTT2|CaO19.6998|GTT14	Protein described as glutathione S-transferase; downregulated upon adherence to polystyrene; regulated upon white-opaque switching; induced in the presence of human neutrophils; oxidative stress-induced via Cap1p; regulated by Gcn2p, Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	1260331	1261608	+	orf19.6999	1260331	1261608	1	1260331	1261608	1260331	1261608		IPF4510.1|Contig4-2915_0013|orf6.7745|CA5045|CaO19.6999|TCD5|IPF4510	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1262802	1263026	-	ntar_636	1262802	1263026	1	1263026	1262802					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1263743	1265949	+	orf19.7001	1263743	1265949	1	1263743	1265949	1263830	1265317	YCK2	IPF4506.1|Contig4-2915_0003|Contig4-2915_0005|orf6.7747|CA5046|CaO19.7001|YCK21	Plasma membrane protein similar to S. cerevisiae Yck2p, which is casein kinase I; null mutant has defect in damaging oral epithelial cells and in hyphal branching; transcription is activated in weak acid stress or on contact with host cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1266161	1267348	-	orf19.7002	1266161	1267348	1	1267348	1266161	1267348	1266161		IPF4504.1|Contig4-2915_0001|orf6.7748|CA5047|CaO19.7002|IPF4504	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1268107	1269362	-	ntar_637	1268107	1269362	1	1269362	1268107	1269188	1268847			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1268848	1270669	+	orf19.7347	1268848	1270669	1	1268848	1270669	1269898	1270629		IPF7116.1|Contig4-2885_0019|orf6.8507|CA5648|CaO19.7347|UBC6	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1269579	1269899	-	orf19.7348	1269579	1269899	1	1269899	1269579	1269899	1269579			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1273204	1273399	+	ntar_638	1273204	1273399	1	1273204	1273399					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1273515	1273771	+	ntar_639	1273515	1273771	1	1273515	1273771					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1274725	1277543	+	orf19.7349	1274725	1277543	1	1274725	1277543	1275143	1277398	CHS4	SKT5|CSD4|CAL2|IPF7112.1|Contig4-2885_0008|Contig4-2885_0010|orf6.8509|CA5649|CaO19.7349	Activator of Chs3p chitin synthase; required for wild-type wall chitin content, but not for hyphal growth; mutant resistant to Calcofluor white; prenylation and 2 transmembrane segments predicted; functional homolog of S. cerevisiae Chs4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1278256	1278482	-	ntar_640	1278256	1278482	1	1278482	1278256					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1279027	1279979	+	orf19.7350	1279027	1279979	1	1279027	1279979	1279191	1279766		IPF7109.2|Contig4-2885_0005|orf6.8510|CA5650|CaO19.7350|IPF7109	Soluble protein in hyphae; fluconazole-induced; mRNA abundance is elevated in a cyr1 or ras1 null mutant and decreased mRNA abundance in an efg1 null mutant; regulated by Nrg1p, Tup1p, Tbf1p, Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1279864	1283062	-	orf19.7353	1279864	1283062	1	1283062	1279864	1282919	1280001		IPF7105.2|Contig4-2885_0001|orf6.8513|CA5651|KIP3|CaO19.7353	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1283315	1285298	-	orf19.7354	1283315	1285298	1	1285298	1283315	1284967	1283684		IPF19815.1|Contig4-2885_0022|orf6.8514|CA5652|CaO19.7354|LAC1|IPF19815	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1285421	1285789	+	ntar_641	1285421	1285789	1	1285421	1285789					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1285938	1287974	-	orf19.7355	1285938	1287974	1	1287974	1285938	1287828	1286524	SSN8	IPF15544.1|Contig4-2029_0005|orf6.8515|CA5653|CaO19.7355	Protein not essential for viability; similar to S. cerevisiae Ssn8p, which is a component of RNA polymerase II holoenzyme [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1285978	1286562	+	ntar_642	1285978	1286562	1	1285978	1286562					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1288222	1288554	-	orf19.7356	1288222	1288554	1	1288554	1288222	1288554	1288222		IPF15543.2|Contig4-2029_0008|orf6.8516|CA5654|CaO19.7356|IPF15543	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1288388	1288630	+	ntar_643	1288388	1288630	1	1288388	1288630	1288481	1288630			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1289412	1290836	+	orf19.7357	1289412	1290836	1	1289412	1290836	1289709	1290755		orf6.8517|IPF18080.1|CA5655|CaO19.7357|IPF18080.3f|IPF18080	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1290739	1292419	-	orf19.7358	1290739	1292419	1	1292419	1290739	1292374	1290851		IPF14683.2|Contig4-2195_0001|orf6.8518|CA5656|CaO19.7358|IPF14683	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1292665	1295619	-	orf19.7359	1292665	1295619	1	1295619	1292665	1295015	1292820	CRZ1	IPF14682.2|Contig4-2195_0002|orf6.8519|CA5657|CaO19.7359|IPF14682	Putative transcription factor; similar to S. cerevisiae calcineurin-regulated transcription factor Crz1p; mutant is fluconazole hypersensitive; likely to act downstream of calcineurin; has C2H2 zinc fingers; not required for mouse virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1296886	1298702	-	orf19.7360	1296886	1298702	2	1298702|1298503	1298618|1296886	1298650	1298174		IPF1242.2|Contig4-2926_0026|orf6.8520|CA5658|CaO19.7360|IPF1242	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1298842	1300456	+	orf19.7361	1298842	1300456	1	1298842	1300456	1298895	1300313		IPF1243.1|Contig4-2926_0024|orf6.8521|CA5659|SEN54|CaO19.7361	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1300278	1302788	-	orf19.7362	1300278	1302788	1	1302788	1300278	1302588	1300375	SKN1	orf6.8522|IPF1245.1|SKN1.3|Contig4-2926_0022|Contig4-2926_0023|CA5660|SKN1.3f	Protein with predicted role in beta-1,6-glucan synthesis; probable N-glycosylated type II membrane protein; transcription and change in mRNA length induced by yeast-hyphal transition; transcription induced by Rim101p or caspofungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1304759	1305048	-	ntar_644	1304759	1305048	1	1305048	1304759	1304890	1304759			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1305752	1308754	+	orf19.7363	1305752	1308754	1	1305752	1308754	1306203	1308425	KRE6	IPF1249.2|Contig4-2926_0012|orf6.8523|CA5661|CaO19.7363	Protein of beta-1,6-glucan synthesis; essential; type II membrane protein; N-glycosylation sites; change in mRNA length, but not mRNA abundance, at yeast-hyphal transition; alkaline upregulated by Rim101p; induced on cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1309951	1311561	+	orf19.7364	1309951	1311561	1	1309951	1311561	1309951	1311561		IPF1250.2|Contig4-2926_0007|orf6.8524|CA5662|CaO19.7364|IPF1250	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1312137	1314198	+	orf19.7365	1312137	1314198	1	1312137	1314198	1312261	1313979		IPF1251.1|Contig4-2926_0004|orf6.8525|CA5663|FYV10|CaO19.7365|IPF1251	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1313869	1315148	-	orf19.7366	1313869	1315148	1	1315148	1313869	1315066	1314005		IPF1252.1|Contig4-2926_0003|orf6.8526|CA5664|CaO19.7366|IPF1252	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1315314	1318301	-	orf19.7367	1315314	1318301	1	1318301	1315314	1317814	1315400	UBP1	IPF1255.1|Contig4-2926_0029|orf6.8527|CA5665|CaO19.7367	Protein described as ubiquitin carboxyl-1-terminal hydrolase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1318559	1320965	-	orf19.7368	1318559	1320965	1	1320965	1318559	1320483	1318951		IPF1257.1|Contig4-3075_0021|orf6.8528|CA5666|CaO19.7368|PUB1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1321930	1323365	+	orf19.7369	1321930	1323365	1	1321930	1323365	1321967	1323226		IPF1259.1|Contig4-3093_0001|orf6.8529|CA5667|CaO19.7369|IPF1259	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1322196	1322447	-	ntar_645	1322196	1322447	1	1322447	1322196					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1322650	1323300	-	ntar_646	1322650	1323300	1	1323300	1322650	1323190	1323044			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1323416	1325080	+	orf19.7370	1323416	1325080	1	1323416	1325080	1323802	1324797		IPF1261.1|Contig4-3093_0003|orf6.8530|CA5668|CaO19.7370|IPF1261	Member of family of putative 7-transmembrane, PQ loop-family of G-protein-coupled receptors (GPCRs) similar to S. pombe Stm1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1325446	1328899	+	orf19.7371	1325446	1328899	1	1325446	1328899	1325563	1328871		ZCF35|IPF1264.2|Contig4-3093_0006|orf6.8531|CA5669|CaO19.7371|IPF1264	Predicted zinc-cluster protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1329275	1332788	+	orf19.7372	1329275	1332788	1	1329275	1332788	1329373	1332699	MRR1	HAP1|IPF1266.1|Contig4-3093_0008|orf6.8532|CA5670|ZCF36|CaO19.7372|IPF1266	Regulator of MDR1 transcription; zinc-finger protein; gain-of-function mutations cause upregulation of MDR1 (which encodes plasma membrane multidrug efflux pump) and consequent multidrug resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1333322	1333620	+	ntar_647	1333322	1333620	1	1333322	1333620					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1333343	1333486	-	ntar_648	1333343	1333486	1	1333486	1333343					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1333794	1337059	+	orf19.7374	1333794	1337059	1	1333794	1337059	1333935	1336985	CTA4	IPF1269.1|Contig4-3093_0011|orf6.8534|CA5671|CaO19.7374	Predicted transcription factor involved in response to nitric oxide; downregulated upon adherence to polystyrene; induced by nitric oxide; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1336903	1337766	-	orf19.7375	1336903	1337766	1	1337766	1336903	1337713	1337099		IPF1271.1|Contig4-3093_0012|orf6.8535|CA5672|CaO19.7375|USA1|IPF1271|U1A	Putative U1A component of the U1 snRNP, involved in splicing; contains two RNA recognition motifs (RRMs); ortholog of S. cerevisiae MUD1; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1337855	1340239	+	orf19.7376	1337855	1340239	1	1337855	1340239	1337896	1340184		IPF1272.1|Contig4-3093_0013|orf6.8536|CA5673|CaO19.7376|IPF1272	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1340411	1343396	+	orf19.7377	1340411	1343396	1	1340411	1343396	1340552	1343272	ASE1	IPF1274.2|Contig4-3093_0015|Contig4-3093_0018|orf6.8537|CA5674|CaO19.7377|IPF1274	Predicted ORF in Assemblies 19, 20 and 21; member of conserved Mcm1p regulon; periodic mRNA expression, peak at cell-cycle G2/M phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1343311	1345211	-	orf19.7378	1343311	1345211	1	1345211	1343311	1345058	1343442		IPF1276.1|Contig4-3093_0019|orf6.8538|CA5675|SIS2|CaO19.7378	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1345340	1345775	+	ntar_649	1345340	1345775	1	1345340	1345775					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1345681	1348438	-	orf19.7379	1345681	1348438	1	1348438	1345681	1347977	1345713	FAA2	IPF1278.1|FAA2-4|Contig4-3093_0023|orf6.8539|CA5676|FAA22|CaO19.7379|FAA24	Predicted acyl CoA synthetase; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1348635	1348933	+	ntar_650	1348635	1348933	1	1348635	1348933	1348796	1348933			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1349459	1352501	-	orf19.7380	1349459	1352501	2	1352501|1349654	1350366|1349459	1352464	1349459		IPF1286.1|Contig4-3093_0029|orf6.8540|CA5677|IPF1286	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=G scenario_last_exon=Z]
Ca21chr3	1361399	1365069	+	orf19.7381	1361399	1365069	1	1361399	1365069	1362622	1364496		ZCF37|IPF1292|IPF1292.1|Contig4-3093_0048|orf6.8541|CA5678|CaO19.7381	Predicted zinc-finger protein of unknown function; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1366696	1368356	+	orf19.7382	1366696	1368356	2	1366696|1367162	1366932|1368356	1366734	1368201	CAM1	IPF1299.1|IPF1296.1|Contig4-3093_0051|orf6.8542|orf19.7381.3|CA5679|CA5680|CAM1.exon2	Putative translation elongation factor eEF1 gamma; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1368557	1370023	+	orf19.7383	1368557	1370023	1	1368557	1370023	1368783	1369889	MNN9	IPF1301.1|Contig4-3093_0053|Contig4-3093_0054|orf6.8543|CA5681|CaO19.7383	Protein of N-linked outer-chain mannan biosynthesis; mutant has defective cell wall; required for wild-type hyphal growth; mutant is hygromycin B sensitive and vanadate resistant; has N-terminal membrane-spanning segment (positions 18-34) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1370239	1372358	+	orf19.7384	1370239	1372358	1	1370239	1372358	1370296	1372218	NOG1	IPF1302.2|Contig4-3036_0030|orf6.8544|CA5682|CaO19.7384	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1373823	1375328	+	orf19.7385	1373823	1375328	1	1373823	1375328	1373823	1375328		IPF3333.1|Contig4-3036_0025|orf6.8545|CA5683|CaO19.7385|LEE1|IPF3333	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1375362	1376425	-	orf19.7386	1375362	1376425	1	1376425	1375362	1376389	1375514		IPF3331.1|Contig4-3036_0022|orf6.8546|CA5684|MBA1|CaO19.7386|IPF3331	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1376578	1378432	+	orf19.7387	1376578	1378432	1	1376578	1378432	1376658	1378301	ELP3	IPF3330.1|Contig4-3036_0021|orf6.8547|CA5685|CaO19.7387|HPA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1378328	1380197	-	orf19.7388	1378328	1380197	1	1380197	1378328	1380061	1378424	PBS2	IPF3329.1|Contig4-3036_0020|orf6.8548|CA5686|CaO19.7388|IPF3329	MAPK kinase (MAPKK); role in osmotic and oxidative stress responses, oxidative stress adaptation; required for stress regulation of Hog1p localization and activity; functional homolog of S. cerevisiae Pbs2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1380632	1385792	+	orf19.7389	1380632	1385792	1	1380632	1385792	1380648	1385540	REV3	IPF3327.2|Contig4-3036_0014|Contig4-3036_0018|orf6.8549|orf6.8550|REV3.5F|CA5687|CA5689|orf19.7390	Protein not essential for viability; similar to S. cerevisiae Rev3p, which is a subunit of DNA polymerase zeta [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1385563	1386875	-	orf19.7391	1385563	1386875	1	1386875	1385563	1386774	1385617	OCH1	IPF3324.1|Contig4-3036_0012|orf6.8551|CA5690|CaO19.7391	alpha-1,6-mannosyltransferase; initiates N-glycan outer chain branch addition; similar to S. cerevisiae Och1p; required for wild-type virulence in mouse intravenous infection; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1387099	1390042	-	orf19.7392	1387099	1390042	1	1390042	1387099	1390002	1387984		IPF3320.1|Contig4-3036_0007|orf6.8552|CA5691|DED1|CaO19.7392	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1390538	1390781	+	ntar_651	1390538	1390781	1	1390538	1390781					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1390776	1393336	-	orf19.7393	1390776	1393336	1	1393336	1390776	1392925	1391147		IPF3316.1|Contig4-3036_0004|Contig4-3036_0005|orf6.8553|CA5692|CaO19.7393|UTR1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1393397	1393694	+	ntar_652	1393397	1393694	1	1393397	1393694					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1393732	1395860	-	orf19.7394	1393732	1395860	1	1395860	1393732	1395623	1393824	GDA1	IPF3313.1|Contig4-3036_0003|orf6.8554|CA5693|CaO19.7394	Golgi membrane GDPase, required for wild-type O-mannosylation, not N-glycosylation; required for wild-type hyphal induction, cell wall, and cell surface charge; not required for HeLa cell adherence; functional homolog of S. cerevisiae Gda1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1395707	1396024	+	orf19.7395	1395707	1396024	1	1395707	1396024	1395707	1396024		IPF27313.1|orf6.8555|CaO19.7395	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1397112	1398317	+	orf19.7396	1397112	1398317	1	1397112	1398317	1397112	1398317		IPF3311.2|Contig4-2982_0013|orf6.8556|CA5694|CaO19.7396|IPF3311	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr3	1399071	1402480	+	orf19.7397	1399071	1402480	1	1399071	1402480	1399184	1402453		IPF3310.1|Contig4-2982_0012|orf6.8557|CA5695|CaO19.7397|IPF3310	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1403603	1404393	+	ntar_653	1403603	1404393	1	1403603	1404393	1403603	1404265			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1406044	1406634	-	orf19.7417	1406044	1406634	1	1406634	1406044	1406634	1406044	TSA1	orf6.8577|IPF2431.1|TSA1A|Contig4-2982_0001|CA5714|CaO19.7417|IPF2431|CA5697|IPF18076.3f|IPF18076.1	Protein of TSA/alkyl hydroperoxide peroxidase C (AhPC) family; similar to thiol-dependent peroxidases of oxidative stress signaling; antigenic; hyphal surface, nucleus; yeast-form nucleus, cytoplasm; biofilm, phagocytosis, peroxide induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1407371	1407515	+	ntar_654	1407371	1407515	1	1407371	1407515					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1407874	1411974	-	orf19.7414	1407874	1411974	1	1411974	1407874	1411974	1407874	ALS6	ALS97|IPF2663.2|Contig4-2957_0018|orf6.2110|CA5713|CaO19.7414|orf6.8574	[NOT TRANSCRIBED?] ALS family protein; expression in S. cerevisiae confers adhesion to gelatin; macrophage-induced gene; N-terminal adhesion domain; ALS family includes cell-surface glycoproteins, some with adhesin function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr3	1415835	1416997	-	orf19.7413	1415835	1416997	1	1416997	1415835	1416937	1416119	MMS21	IPF2657.1|Contig4-2957_0012|orf6.8573|CA5712|CaO19.7413|IPF2657	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1417162	1419622	-	orf19.7412	1417162	1419622	1	1419622	1417162	1419479	1417278	MUB1	IPF2656.1|Contig4-2957_0011|orf6.8572|CA5711|CaO19.7412	Protein not essential for viability; similar to S. cerevisiae Mub1p, which has a role in regulation of budding [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1419866	1421049	-	orf19.7411	1419866	1421049	1	1421049	1419866	1420990	1419938	OAC1	IPF2654.1|Contig4-2957_0008|orf6.8571|CA5710|CaO19.7411	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1421460	1424753	+	orf19.7410	1421460	1424753	1	1421460	1424753	1421548	1424652		IPF2653|IPF2653.1|Contig4-2957_0004|orf6.8570|CA5709|CaO19.7410	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1424576	1425124	-	orf19.7409.1	1424576	1425124	1	1425124	1424576	1424953	1424741		IPF2652.2|CA5708|MRPL39	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1425296	1426543	+	orf19.7409	1425296	1426543	1	1425296	1426543	1425327	1425974	ERV25	IPF2651.2|Contig4-3029_0001|orf6.8569|CA5707|CaO19.7409	Transcription is induced upon filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1425835	1428058	-	orf19.7406	1425835	1428058	1	1428058	1425835	1428031	1425971		IPF2649.1|Contig4-3029_0002|orf6.8566|CA5706|SEC20|CaO19.7406|IPF2649	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1428196	1429423	-	orf19.7405	1428196	1429423	1	1429423	1428196	1429275	1428571		IPF2645.2|Contig4-3029_0003|orf6.8565|CA5705|CaO19.7405|IPF2645	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1429643	1430805	+	orf19.7404	1429643	1430805	1	1429643	1430805	1429707	1430705		IPF2644.2|Contig4-3029_0004|orf6.8564|CA5704|CaO19.7404|CHA1|CHA11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1431186	1433755	+	orf19.7403	1431186	1433755	1	1431186	1433755	1431434	1433689		IPF2643.1|Contig4-3029_0008|orf6.8563|CA5703|CaO19.7403|IPF2463	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1433123	1433731	-	ntar_655	1433123	1433731	1	1433731	1433123	1433731	1433504			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1434002	1438461	+	orf19.7402	1434002	1438461	1	1434002	1438461	1434294	1438325	DOT1	IPF2639.1|Contig4-3029_0012|orf6.8562|CA5702|CaO19.7402|PCH1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1438410	1441874	-	orf19.7401	1438410	1441874	1	1441874	1438410	1441681	1438511	ISW2	IPF2633.1|Contig4-3029_0013|CA5701|CaO19.7401|orf6.8561	Protein required for chlamydospore formation, not essential for viability; repressed upon high-level peroxide stress; similar to S. cerevisiae Isw2p, which is an ATPase involved in chromatin remodeling [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1442408	1442638	+	ntar_656	1442408	1442638	1	1442408	1442638					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1446613	1451319	+	orf19.7400	1446613	1451319	1	1446613	1451319	1446613	1451319	ALS7	ALS94|ALS95|ALS96|ALS98|IPF19816.1|Contig4-2957_0018|CA5699|CaO19.7400|orf6.8560	ALS family protein; hypermutable contingency gene; growth-regulated, downregulated in biofilm; two variable repeat regions; expression in S. cerevisiae does not confer adhesiveness; ALS family includes adhesins, cell-surface glycoproteins [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr3	1451375	1451836	-	ntar_657	1451375	1451836	1	1451836	1451375					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1452473	1453063	+	orf19.7398.1	1452473	1453063	1	1452473	1453063	1452473	1453063	TSA1B	IPF18075.2|TSA1|CA5698|IPF10875.5f	Putative peroxidase; orf19.7398.1 is contig-truncated fragment of gene identical to TSA1; Tsa1p and Tsa1Bp role under oxidative/reductive stress, hyphal cell wall formation; in hyphal nucleus, cell wall; yeast-form nucleus, cytoplasm [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1453315	1453913	+	orf19.7419	1453315	1453913	1	1453315	1453913	1453315	1453857	HNT2	IPF2434.1|Contig4-2982_0003|orf6.8579|CA5715|CaO19.7419	Predicted ORF in Assemblies 19, 20 and 21; induced upon low-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	1453976	1454767	+	orf19.7420	1453976	1454767	1	1453976	1454767	1453976	1454767		IPF2436.1|Contig4-2982_0004|orf6.8580|CA5716|CaO19.7420|MED6	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1454844	1455511	-	orf19.7421	1454844	1455511	1	1455511	1454844	1455479	1454868	CYP5	CYP51|IPF2438.1|Contig4-2982_0006|orf6.8581|CA5717|CaO19.7421|CPR51	Protein described as a peptidyl-prolyl cis-trans isomerase; macrophage-downregulated protein level; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1455527	1456911	-	orf19.7422	1455527	1456911	1	1456911	1455527	1456911	1455739		IPF2440.1|Contig4-2982_0008|orf6.8582|CA5718|LCP5|CaO19.7422	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1457024	1457809	+	orf19.7424	1457024	1457809	1	1457024	1457809	1457024	1457809	NSA2	IPF2441.1|Contig4-2982_0009|Contig4-3080_0023|orf6.8584|CA5719|CaO19.7424|IPF2441	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1457312	1457809	+	orf19.7398	1457312	1457809	1	1457312	1457809	1457420	1457809		IPF3309.1|orf6.8558|CA5696|IPF3309.3eoc	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1457891	1459253	-	orf19.7425	1457891	1459253	1	1459253	1457891	1459194	1458034		IPF2442.1|Contig4-3080_0022|orf6.8585|CA5720|CaO19.7425|UNG1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1459423	1460581	-	orf19.7426	1459423	1460581	1	1460581	1459423	1460546	1459524		IPF2443.1|Contig4-3080_0021|orf6.8586|CA5721|OST6|CaO19.7426|IPF2443	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1460667	1462120	-	orf19.7427	1460667	1462120	1	1462120	1460667	1461976	1460762		IPF2446.1|Contig4-3080_0020|orf6.8587|CA5722|CaO19.7427|IPF2446	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1462346	1463627	+	orf19.7428	1462346	1463627	2	1462346|1462500	1462409|1463627	1462396	1463580	APN1	IPF2448.1|Contig4-3080_0019|orf6.8588|CA5723|CaO19.7428	Ortholog of S. cerevisiae Apn1p, which is an AP endonuclease; transcriptionally induced by interaction with macrophage; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1463644	1467148	+	orf19.7433	1463644	1467148	1	1463644	1467148	1463644	1466934		IPF19817.1|Contig4-3080_0015|Contig4-3080_0017|Contig4-3080_0018|orf6.8593|CA5724|NUP116|CaO19.7433	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1467942	1469438	+	orf19.7434	1467942	1469438	1	1467942	1469438	1468019	1469104	GLG2	IPF2460.2|Contig4-3080_0014|orf6.8594|CA5725|CaO19.7434|GLG22	Protein described as self-glucosylating initiator of glycogen synthesis; expression is regulated upon white-opaque switching; hyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1469417	1469715	-	th(gug)3	1469417	1469715	2	1469715|1469652	1469679|1469417					tRNA-His predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1476322	1476526	+	ntar_658	1476322	1476526	1	1476322	1476526					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1476674	1476840	+	ntar_659	1476674	1476840	1	1476674	1476840					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1477000	1479222	+	orf19.7436	1477000	1479222	1	1477000	1479222	1477308	1479146	AAF1	CAD1|IPF2468.1|Contig4-3080_0008|Contig4-3080_0010|orf6.8596|CA5726|CaO19.7436	Possible regulatory protein; Glu-rich domain; production in S. cerevisiae increases endothelial cell adherence and flocculence; expressed under diverse conditions, detected in yeast-form and hyphal cells; alkaline or caspofungin upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1479064	1479862	-	orf19.7436.1	1479064	1479862	2	1479862|1479610	1479745|1479064	1479789	1479317	ECM15	IPF2469.1|CA5727	ORF Predicted by Annotation Working Group; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1480085	1480524	-	ntar_660	1480085	1480524	1	1480524	1480085					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1481998	1482965	+	orf19.7437	1481998	1482965	1	1481998	1482965	1481998	1482921		IPF2471.1|Contig4-3080_0004|orf6.8597|CA5728|CaO19.7437|MAA1|IPF2471	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1482528	1482919	-	ntar_661	1482528	1482919	1	1482919	1482528					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1483085	1486321	+	orf19.7438	1483085	1486321	1	1483085	1486321	1483162	1486227	UBA1	IPF2475.1|Contig4-3080_0002|orf6.8598|CA5729|CaO19.7438	Protein similar to S. cerevisiae Uba1p, which is a ubiquitin-activating enzyme that is essential for growth; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1486352	1490323	-	orf19.7440	1486352	1490323	1	1490323	1486352	1490323	1486352	HST6	STE6|IPF2479.2|Contig4-2076_0006|orf6.8600|CA5730|CaO19.7440	Functional homolog of S. cerevisiae Ste6p (a-pheromone transporter); required for mating of MTLa cells; ABC transporter related to mammalian P-glycoproteins; a-type specific, not regulated during white-opaque or yeast-hyphal switching [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1490460	1491993	-	orf19.7441	1490460	1491993	1	1491993	1490460	1491920	1490994		IPF2870.2|Contig4-2076_0005|orf6.8601|CA5731|CaO19.7441|IPF2870	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1492068	1493146	+	orf19.7442	1492068	1493146	1	1492068	1493146	1492168	1493064		IPF2872.2|Contig4-2076_0002|orf6.8602|CA5732|CaO19.7442|IPF2872	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1492420	1493870	-	orf19.7443	1492420	1493870	1	1493870	1492420	1493870	1493103		IPF2873.1|Contig4-2076_0001|orf6.8603|CA5733|CaO19.7443|IPF2873	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1493879	1495015	-	orf19.7444	1493879	1495015	1	1495015	1493879	1494904	1493879		IPF20029.1|orf6.8604|CA5734|CaO19.7444|IPF20029	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1496187	1498244	+	orf19.7445	1496187	1498244	1	1496187	1498244	1496411	1497898		IPF2878.1|Contig4-2403_0005|orf6.8605|CA5735|VID24|CaO19.7445|IPF2878	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1498222	1499249	-	orf19.7446	1498222	1499249	1	1499249	1498222	1499183	1498506	OPI3	IPF2880.1|Contig4-2403_0004|orf6.8606|CA5736|CaO19.7446	Putative phosphatidylethanolamine N-methyltransferase of phosphatidylcholine biosynthesis; downregulation correlates with clinical development of fluconazole resistance; amphotericin B repressed; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1502028	1503653	+	orf19.7447	1502028	1503653	1	1502028	1503653	1502028	1503653	JEN1	IPF2882.1|Contig4-3064_0026|orf6.8607|CA5737|CaO19.7447	Lactate transporter; transcriptionally induced by lactic acid, activated by Cat8p; alkaline downregulated by Rim101p; localizes to plasma membrane; similar to S. cerevisiae Jen1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1504090	1505503	+	orf19.7448	1504090	1505503	1	1504090	1505503	1504116	1505450	LYS9	IPF2883.1|Contig4-3064_0025|orf6.8608|CA5738|CaO19.7448	Putative enzyme of lysine biosynthesis; soluble protein in hyphae; amphotericin B repressed; Gcn4p-regulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1505418	1507317	-	orf19.7449	1505418	1507317	1	1507317	1505418	1507230	1505509		IPF2884.1|Contig4-3064_0024|orf6.8609|CA5739|CaO19.7449|IPF2884	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1508125	1509473	+	orf19.7450	1508125	1509473	1	1508125	1509473	1508297	1509388		IPF20030.1|Contig4-3064_0020|Contig4-3064_0021|orf6.8610|CA5740|BNI5|CaO19.7450|IPF20030	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1510954	1515181	+	orf19.7451	1510954	1515181	1	1510954	1515181	1511034	1515005	FUN31	IPF2894.1|Contig4-2597_0004|Contig4-3064_0016|orf6.8611|orf6.974|CA5742|PSK1|CaO19.7451|PSK2	Putative PAS kinase involved in cell wall damage response; similar to S. cerevisiae Psk1p, which is a putative serine/threonine protein kinase; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1515378	1517650	+	orf19.7452	1515378	1517650	1	1515378	1517650	1515440	1517650		IPF2895.2|Contig4-3064_0013|Contig4-3064_0014|orf6.8612|CA5743|CaO19.7452|IPF2895	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1517651	1518699	+	orf19.7453	1517651	1518699	1	1517651	1518699	1517876	1518697		IPF2898.2|Contig4-3064_0011|Contig4-3064_0012|orf6.8613|CA5744|CaO19.7453|IPF2898	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1518712	1520430	-	orf19.7454	1518712	1520430	1	1520430	1518712	1520340	1518781	TAF60	IPF2900.1|Contig4-3064_0010|orf6.8614|CA5745|CaO19.7454|TAF6	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1520538	1521617	-	orf19.7455	1520538	1521617	1	1521617	1520538	1521617	1520538		IPF2902.1|Contig4-3064_0009|orf6.8615|CA5746|CaO19.7455|IPF2902	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1523505	1524897	-	orf19.7456	1523505	1524897	1	1524897	1523505	1524694	1523630		IPF2903.1|Contig4-3064_0008|orf6.8616|CA5747|CaO19.7456|IPF2903	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1525184	1526274	-	orf19.7457	1525184	1526274	1	1526274	1525184	1526236	1525352		IPF2905.1|Contig4-3064_0006|orf6.8617|CA5748|CaO19.7457|IPF2905	Predicted ORF in Assemblies 19, 20 and 21; shows Mob2p-dependent hyphal regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1526334	1527173	-	orf19.7458	1526334	1527173	1	1527173	1526334	1527005	1526640		IPF2906.1|orf6.8618|SKO1|CaO19.7458	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1527333	1529825	-	orf19.7459	1527333	1529825	1	1529825	1527333	1529427	1527586		IPF2908.1|Contig4-3064_0002|orf6.8619|CA5749|CaO19.7459|IPF2908	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-induced; ketoconazole-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1531005	1535241	+	orf19.6832	1531005	1535241	1	1531005	1535241	1531143	1533269		orf19.14124|orf19.14125|IPF20332.1|IPF12080.1|IPF20329.1|IPF12082.2|Contig4-2530_0001|Contig4-2530_0005|Contig4-2530_0007|Contig4-2530_0013|orf6.8799|orf6.8798|CA5877|CA5876|orf19.6833|CaO19.6832|CaO19.14124|IPF12082.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1535409	1538341	+	orf19.6831	1535409	1538341	1	1535409	1538341	1535436	1538090	PRP5	orf19.14123|IPF20305.1|IPF12079.1|Contig4-2530_0008|orf6.8800|CA5878|CaO19.14123|CaO19.6831	Protein described as a pre-mRNA processing RNA-helicase; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1538328	1539131	-	ntar_662	1538328	1539131	1	1539131	1538328	1538806	1538681			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1538367	1539279	+	orf19.6830	1538367	1539279	1	1538367	1539279	1538409	1539206		orf19.14122|IPF20403.1|IPF12076.1|Contig4-2530_0009|orf6.8801|CA5879|CaO19.14122|CaO19.6830|IPF12076	Putative enoyl-CoA hydratase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1539435	1541461	+	orf19.6829	1539435	1541461	1	1539435	1541461	1539478	1541442		orf19.14121|IPF20334.1|IPF12074.2|Contig4-2530_0011|orf6.8802|CA5880|AEP2|CaO19.14121|CaO19.6829|IPF12074	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1541642	1542378	+	orf19.6828.1	1541642	1542378	1	1541642	1542378	1541743	1541949		IPF20322.1|IPF2429.2|CA5881|SSS1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1542467	1543583	+	orf19.6828	1542467	1543583	1	1542467	1543583	1542612	1543439		orf19.14120|IPF20399.1|IPF20032.1|Contig4-2033_0003|orf6.8803|CA5882|RRP1|CaO19.6828|CaO19.14120	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1543757	1546322	+	orf19.6827	1543757	1546322	1	1543757	1546322	1543880	1544932	SLU7	orf19.14119|IPF20380.1|IPF2425.1|Contig4-2033_0005|Contig4-2033_0006|orf6.8804|CA5883|CaO19.14119|CaO19.6827|IPF2425	Protein similar to S. cerevisiae Slu7p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1544953	1546146	-	orf19.6826	1544953	1546146	1	1546146	1544953	1546146	1544953	SLF1	orf19.14118|IPF20376.1|IPF2424.1|Contig4-2033_0007|orf6.8805|CA5884|CaO19.6826|CaO19.14118	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1549100	1550503	+	orf19.6824	1549100	1550503	1	1549100	1550503	1549100	1550503		orf19.14116|IPF20362.1|IPF2419.1|Contig4-2745_0006|orf6.8807|CA5885|CaO19.6824|CaO19.14116|IPF2419	Predicted ORF in Assemblies 19, 20 and 21; appears to be C. albicans-specific; induced upon biofilm formation; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1550585	1552065	-	orf19.6822	1550585	1552065	2	1552065|1551694	1551881|1550585	1551883	1550807		orf19.14114|IPF20390.1|IPF2417.1|Contig4-2745_0005|orf6.8809|CA5886|CaO19.6822|CaO19.14114|IPF2417	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1552206	1554879	+	orf19.6821	1552206	1554879	1	1552206	1554879	1552318	1554741		orf19.14113|IPF20313.1|IPF2415.1|Contig4-2745_0004|orf6.8810|CA5887|APC2|CaO19.14113|CaO19.6821|IPF2415	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1554471	1556375	-	orf19.6820	1554471	1556375	1	1556375	1554471	1556335	1554788		orf19.14112|IPF20360.1|IPF2414.1|Contig4-2745_0002|orf6.8811|CA5888|CaO19.14112|CaO19.6820|IPF2414	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1556536	1560714	-	orf19.6818	1556536	1560714	1	1560714	1556536	1560675	1556563		orf19.14110|IPF20440.1|IPF2409.2|Contig4-2745_0001|orf6.8813|CA5889|CaO19.14110|CaO19.6818|IPF2409	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1560751	1561053	-	tw(cca)2	1560751	1561053	2	1561053|1560993	1561017|1560751				tW(CCA)2.2	tRNA-Trp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1567804	1570471	+	orf19.6817	1567804	1570471	1	1567804	1570471	1568561	1570114	FCR1	orf19.14109|IPF20357.1|IPF2404.1|Contig4-3076_0005|orf6.8814|CA5890|CaO19.14109|CaO19.6817	Putative zinc cluster transcription factor; negative regulator of fluconazole, ketoconazole, brefeldin A resistance; transposon mutation affects filamentous growth; partially suppresses S. cerevisiae pdr1 pdr3 mutant fluconazole sensitivity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1567889	1568204	-	ntar_663	1567889	1568204	1	1568204	1567889	1568204	1568061			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1572496	1573886	-	orf19.6816	1572496	1573886	1	1573886	1572496	1573420	1572572		orf19.14108|IPF20400.1|IPF2400.1|Contig4-3076_0009|orf6.8815|CA5891|CaO19.6816|CaO19.14108|IPF2400	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1574318	1574547	+	ntar_664	1574318	1574547	1	1574318	1574547					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1574904	1576161	+	orf19.6814	1574904	1576161	1	1574904	1576161	1574975	1575982	TDH3	orf19.14106|TDH1|GAP|GAP1|G3P|IPF20384.1|IPF2397.2|Contig4-3076_0010|orf6.8817|CA5892|CaO19.14106|CaO19.6814	Glyceraldehyde-3-phosphate dehydrogenase; enzyme of glycolysis; binds fibronectin and laminin; at surface of yeast-form cells and hyphae; soluble in hyphae; antigenic during infection; NAD-linked; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1576247	1577066	+	orf19.6813	1576247	1577066	1	1576247	1577066	1576263	1577066		orf19.14105|IPF20397.1|IPF2392.2|Contig4-3076_0011|orf6.8818|CA5893|CaO19.14105|CaO19.6813|IPF2392	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1577290	1579916	+	orf19.6812	1577290	1579916	1	1577290	1579916	1577400	1579709	PMT2	orf19.14104|IPF20316.1|IPF2391.2|Contig4-3076_0013|orf6.8819|CA5894|CaO19.6812|CaO19.14104	Essential protein mannosyltransferase with roles in hyphal growth and drug sensitivity; member of the PMT family which includes Pmt1p, Pmt2p, Pmt4p, Pmt5p, and Pmt6p; induced during cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1580078	1580953	+	orf19.6811	1580078	1580953	1	1580078	1580953	1580118	1580816		orf19.14103|IPF20411.1|IPF2389.2|Contig4-3076_0015|orf6.8820|CA5895|CaO19.6811|ISA2|CaO19.14103	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1580712	1583145	-	orf19.6810	1580712	1583145	1	1583145	1580712	1582863	1580932		orf19.14102|IPF20335.1|IPF2388.1|Contig4-3076_0016|orf6.8821|CA5896|CaO19.6810|TPD3|CaO19.14102	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1583972	1585270	+	orf19.6809	1583972	1585270	1	1583972	1585270	1584185	1585153		orf19.14101|IPF20381.1|IPF2384.1|Contig4-3076_0019|orf6.8822|CA5897|CaO19.14101|PMU1|CaO19.6809|IPF2384	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1585170	1585396	-	ntar_665	1585170	1585396	1	1585396	1585170	1585396	1585262			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1585386	1587215	+	orf19.6807	1585386	1587215	1	1585386	1587215	1585386	1587215		orf19.14099|IPF20336.1|IPF2382.1|Contig4-3076_0021|orf6.8824|CA5899|CaO19.6807|CaO19.14099|IPF2382	Predicted ORF in retrotransposon Tca17 with similarity to parts of the Gag-Pol region of retrotransposons; clade-associated gene expression [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1587027	1587491	-	ntar_666	1587027	1587491	1	1587491	1587027	1587341	1587027			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1589728	1590266	+	ntar_667	1589728	1590266	1	1589728	1590266	1589885	1590148			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1591351	1595115	+	orf19.6805	1591351	1595115	1	1591351	1595115	1592069	1594900		orf19.14097|IPF20302.1|IPF2374.2|orf6.8826|CA5901|CaO19.14097|CaO19.6805|IPF2374	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1595029	1595303	-	ty(gua)3	1595029	1595303	2	1595303|1595223	1595267|1595029				tY(GUA)3.2	tRNA-Tyr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1595878	1597804	+	orf19.6804	1595878	1597804	1	1595878	1597804	1595940	1597760		orf19.14096|IPF20333.1|IPF5941.2|Contig4-2895_0002|orf6.8827|CA5902|CaO19.14096|SRP68|CaO19.6804	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1597952	1599260	+	orf19.6803	1597952	1599260	1	1597952	1599260	1598019	1599131	HUT1	orf19.14095|IPF20379.1|IPF5942.1|Contig4-2120_0003|orf6.8828|CA5903|CaO19.14095|CaO19.6803|IPF5942	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1599445	1600716	+	orf19.6802	1599445	1600716	1	1599445	1600716	1599489	1600649		orf19.14094|IPF20378.1|IPF5944.1|Contig4-2120_0002|orf6.8829|CA5904|CaO19.14094|CaO19.6802|IPF5944	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1600886	1602700	+	orf19.6801	1600886	1602700	1	1600886	1602700	1600945	1602678	RPD31	orf19.14093|IPF20341.1|IPF5946.2|orf6.8830|CA5905|RPD32|CaO19.14093|CaO19.6801	Putative ortholog histone deacetylase; involved in regulation of white-opaque switching; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1603100	1604852	+	orf19.6800	1603100	1604852	1	1603100	1604852	1603170	1604738	POS5	orf19.14092|IPF20354.1|IPF5949.2|orf6.8831|CA5906|CaO19.14092|CaO19.6800|IPF5949	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Pos5p, which is a mitochondrial NADH kinase involved in the oxidative stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1607528	1611501	+	orf19.6798	1607528	1611501	1	1607528	1611501	1608042	1611284	SSN6	orf19.14090|IPF20461.1|IPF5957.1|Contig4-2796_0009|orf6.8833|CA5907|CaO19.14090|CYC8|CaO19.6798	Functional homolog of S. cerevisiae Cyc8p/Ssn6p; Ssn6p and Tup1p regulate distinct sets of genes; hyphal growth regulator; overexpression or mutation causes avirulence in mouse IV infection; TPR motifs; repressed during hyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1611510	1614202	-	orf19.6797	1611510	1614202	1	1614202	1611510	1614158	1611630		orf19.14089|IPF20311.1|IPF5960.1|Contig4-2796_0008|orf6.8834|CA5908|CaO19.14089|CaO19.6797|IPF5960	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr3	1614442	1615259	-	orf19.6796	1614442	1615259	1	1615259	1614442	1615205	1614504		orf19.14088|IPF20413.1|IPF5962.1|Contig4-2796_0005|orf6.8835|CA5909|CaO19.6796|YSA1|CaO19.14088	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1615243	1616192	+	orf19.6795	1615243	1616192	1	1615243	1616192	1615530	1615889		orf19.14087|IPF20449.1|IPF5964.1|Contig4-2796_0002|orf6.8836|CA5910|CaO19.6795|CaO19.14087|IPF5964	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1616370	1617609	+	orf19.6794	1616370	1617609	1	1616370	1617609	1616648	1617319	FESUR1	orf19.14086|IPF20407.1|IPF5965.1|Contig4-2796_0001|orf6.8837|CA5911|CaO19.6794|CaO19.14086|IPF5965	Protein described as ubiquinone reductase; transcriptionally induced by interaction with macrophage; alkaline downregulated; repressed by nitric oxide; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1617669	1618766	-	orf19.6793	1617669	1618766	1	1618766	1617669	1618766	1617669		orf19.14085|IPF20374.1|IPF5966.2|orf6.8838|CA5912|CaO19.6793|CaO19.14085|IPF5966	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr3	1617720	1618090	+	ntar_668	1617720	1618090	1	1617720	1618090	1617959	1618090			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1619641	1620127	-	ntar_669	1619641	1620127	1	1620127	1619641					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1620243	1621771	+	orf19.6792	1620243	1621771	1	1620243	1621771	1620333	1621607	RRD1	orf19.14084|IPF20368.1|IPF10731.2|Contig4-2629_0011|orf6.8839|CA5913|CaO19.14084|CaO19.6792	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1621292	1621646	-	ntar_670	1621292	1621646	1	1621646	1621292	1621646	1621512			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1622116	1623251	+	orf19.6791	1622116	1623251	1	1622116	1623251	1622371	1622781	HHT1	orf19.14083|IPF20438.1|IPF10733.1|Contig4-2629_0010|orf6.8840|CA5914|CaO19.6791|HHT3|CaO19.14083	Putative histone H3; reduced mRNA abundance detected in homozygous fkh2 null mutant; farnesol regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1623551	1623730	+	ntar_671	1623551	1623730	1	1623551	1623730					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1623669	1626530	-	orf19.6790	1623669	1626530	1	1626530	1623669	1626530	1623867		orf19.14082|IPF20308.1|IPF10735.2|Contig4-2629_0008|orf6.8841|CA5915|NGR1|CaO19.14082|CaO19.6790|IPF10735	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr3	1626906	1627532	+	ntar_672	1626906	1627532	1	1626906	1627532					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1628188	1632073	+	orf19.6789	1628188	1632073	1	1628188	1632073	1628276	1632073		orf19.14081|IPF20451.1|IPF19818.1|Contig4-1999_0005|Contig4-2629_0004|orf6.8842|CA5916|NUD1|CaO19.6789|CaO19.14081|IPF19818	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr3	1632257	1633201	+	orf19.6788	1632257	1633201	1	1632257	1633201	1632380	1633117		orf19.14080|IPF20406.1|IPF8923.1|Contig4-1999_0004|orf6.8843|CA5917|CaO19.6788|CaO19.14080|IPF8923	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1633370	1634470	+	orf19.6787	1633370	1634470	2	1633370|1633711	1633450|1634470	1633434	1634107		orf19.14079|IPF20443.1|IPF8924.2|Contig4-1999_0002|orf6.8844|CA5918|ERV14|CaO19.14079|CaO19.6787	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1634359	1636335	-	orf19.6786	1634359	1636335	2	1636335|1636120	1636189|1634359	1636235	1634434		orf19.14078|IPF20351.1|IPF8926.2|Contig4-1999_0001|Contig4-1999_0006|orf6.8845|CA5919|CaO19.6786|CaO19.14078|IPF8926.3	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1636551	1637217	-	orf19.6785	1636551	1637217	1	1637217	1636551	1637102	1636671	RPS12	orf19.14077|IPF20428.1|IPF8927.1|Contig4-2621_0003|orf6.8846|CA5920|CaO19.14077|CaO19.6785	Protein described as acidic ribosomal protein S12; regulated by Gcn4p, activated by Tbf1p; repressed under amino acid starvation (3-aminotriazole treatment); protein abundance is affected by URA3 expression in the CAI-4 strain background [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1637528	1637711	+	ntar_673	1637528	1637711	1	1637528	1637711					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1637868	1639361	+	orf19.6784	1637868	1639361	1	1637868	1639361	1638007	1639299	PGA32	orf19.14076|orf6.8847|IPF20370.1|IPF8930.1|Contig4-2621_0005|CA5921|CaO19.6784|CaO19.14076|IPF8930	Putative GPI-anchored protein of unknown function; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1639384	1642147	-	orf19.6783	1639384	1642147	1	1642147	1639384	1641701	1639689		orf19.14075|IPF20330.1|IPF8931.1|Contig4-2621_0007|Contig4-2621_0008|orf6.8848|CA5922|CaO19.14075|MRS6|CaO19.6783	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1642416	1642686	+	ntar_674	1642416	1642686	1	1642416	1642686					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1642949	1643548	+	ntar_675	1642949	1643548	1	1642949	1643548	1643184	1643447			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1643533	1645826	-	orf19.6782	1643533	1645826	1	1645826	1643533	1645826	1643772	BMT1	orf19.14074|IPF20326.1|IPF2825.2|orf6.8849|CA5923|WRY4|CaO19.6782|CaO19.14074|IFQ2	Putative beta-mannosyltransferase, required for addition of the first beta-mannose residue to the acid-stable fraction of cell wall phosphopeptidomannan; member of a 9-gene family; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	1643849	1643988	+	ntar_676	1643849	1643988	1	1643849	1643988					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1645851	1646137	+	ntar_677	1645851	1646137	1	1645851	1646137	1645851	1646108			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1649580	1651412	-	orf19.6781	1649580	1651412	2	1651412|1651134	1651297|1649580	1651365	1649785		orf19.14073|IPF20371.1|IPF2822.1|Contig4-2943_0009|orf6.8850|CA5924|CaO19.6781|ZFU2|CaO19.14073|IPF2822	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1652487	1653661	+	orf19.6780	1652487	1653661	1	1652487	1653661	1652564	1653421	MET8	orf19.14072|IPF20394.1|IPF2818.1|Contig4-2943_0012|orf6.8851|CA5925|CaO19.14072|CaO19.6780	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1653084	1654919	-	orf19.6779	1653084	1654919	1	1654919	1653084	1654771	1653431	PRO2	orf19.14071|IPF20366.1|IPF2817.1|Contig4-2943_0013|Contig4-2943_0014|orf6.8852|CA5926|CaO19.14071|CaO19.6779	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1655223	1659426	+	orf19.6778	1655223	1659426	1	1655223	1659426	1655336	1659298		orf19.14070|IPF20448.1|IPF2816.1|Contig4-2943_0017|orf6.8853|CA5927|CaO19.14070|DRS2|CaO19.6778|DRS22	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1660336	1661034	+	orf19.6777	1660336	1661034	1	1660336	1661034	1660336	1661034		orf19.14069|IPF20412.1|IPF2815.1|Contig4-2943_0018|orf6.8854|CA5928|CaO19.14069|CaO19.6777|IPF2815	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1660529	1660754	-	ntar_678	1660529	1660754	1	1660754	1660529					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1661342	1663179	+	orf19.6776	1661342	1663179	1	1661342	1663179	1661373	1662875	GCD2	orf19.14068|IPF20358.1|IPF2813.1|Contig4-2943_0020|Contig4-2943_0021|orf6.8855|CA5929|CaO19.6776|CaO19.14068	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1662885	1668512	-	orf19.6773	1662885	1668512	1	1668512	1662885	1668512	1662933	ECM29	orf19.14064|orf19.14065|IPF20301.1|IPF2810.2|Contig4-3030_0004|orf6.8859|orf6.8858|CA5931|CA5930|orf19.6772|ECM29.3f|ECM29.exon2	Protein similar to S. cerevisiae Ecm29p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1668605	1669509	-	orf19.6771	1668605	1669509	1	1669509	1668605	1669384	1668695	UBI4	orf19.14063|UBI1|IPF20409.1|IPF2805.1|Contig4-3030_0005|orf6.8860|CA5932|CaO19.14063|CaO19.6771	Ubiquitin precursor (polyubiquitin), contains three tandem repeats of the ubiquitin peptide that are processed to individual units; transcription is induced by stress; mRNA found in yeast-form and mycelial cells at similar abundance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1670259	1671659	-	orf19.6770	1670259	1671659	1	1671659	1670259	1671371	1670415		orf19.14062|IPF20386.1|IPF2804.1|Contig4-3030_0008|orf6.8861|CA5933|ENT4|CaO19.6770|CaO19.14062|IPF2804	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1670570	1670834	+	ntar_679	1670570	1670834	1	1670570	1670834					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1672814	1673106	-	ntar_680	1672814	1673106	1	1673106	1672814	1672975	1672814			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1673117	1675526	+	orf19.6769	1673117	1675526	1	1673117	1675526	1673322	1675472		orf19.14061|IPF20321.1|IPF2802.1|Contig4-3030_0011|Contig4-3030_0012|orf6.8862|CA5934|CaO19.14061|CaO19.6769|IPF2802	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1675709	1676993	+	orf19.6766	1675709	1676993	1	1675709	1676993	1675736	1676926		orf19.14058|IPF20375.1|IPF2798.1|Contig4-3030_0014|orf6.8865|CA5935|NOP13|CaO19.6766|CaO19.14058|IPF2798	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1676924	1680957	-	orf19.6763	1676924	1680957	1	1680957	1676924	1680819	1677226	SLK19	orf19.14055|orf6.8869|IPF2795|KER1|IPF20454.1|IPF2795.1|Contig4-2621_0012|Contig4-3030_0015|CA5936|CaO19.6763|CaO19.14055	Alkaline-induced protein of plasma membrane; affects cell aggregation, cell wall; similar to S. cerevisiae Slk19p (a kinetochore protein with roles in mitosis, meiosis); required for wild-type virulence in mouse; macrophage-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1682292	1682538	-	ntar_681	1682292	1682538	1	1682538	1682292	1682450	1682292			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1682832	1685135	+	orf19.6760	1682832	1685135	1	1682832	1685135	1683075	1685135	MDS3	orf19.14052|IPF20324.1|IPF2784.2|Contig4-3030_0020|orf6.8871|CA5937|CaO19.14052|CaO19.6760|IPF2784	Component of an alkaline pH-response pathway distinct from the Rim101p pathway, required for growth and hyphal formation at pH 9 and for full virulence in a mouse model of systemic infection; has a role in chlamydospore formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1685238	1687436	+	orf19.6759	1685238	1687436	1	1685238	1687436	1685238	1687226		orf19.14051|IPF20325.1|IPF3482.2|Contig4-2141_0007|orf6.8872|CA5938|CaO19.6759|CaO19.14051|IPF3481	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1687588	1688685	+	orf19.6758	1687588	1688685	1	1687588	1688685	1687707	1688576		orf19.14050|IPF20398.1|IPF3484.1|Contig4-2141_0004|orf6.8873|CA5939|CaO19.6758|CaO19.14050|IPF3484	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1688962	1689973	+	orf19.6757	1688962	1689973	1	1688962	1689973	1689013	1689900	GCY1	orf19.14049|IPF20388.1|IPF3485.1|Contig4-2141_0004|Contig4-2255_0006|orf6.8874|CA5940|CaO19.14049|CaO19.6757|IPF3485	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; farnesol-downregulated; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1690092	1690283	-	ntar_682	1690092	1690283	1	1690283	1690092					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1690112	1691116	+	orf19.6756	1690112	1691116	1	1690112	1691116	1690160	1691053		orf19.14048|IPF20393.1|IPF3486.1|Contig4-3006_0001|orf6.8875|CA5941|CaO19.6756|CaO19.14048|IPF3486	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1690713	1691038	-	ntar_683	1690713	1691038	1	1691038	1690713					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1691232	1693129	+	orf19.6755	1691232	1693129	1	1691232	1693129	1691329	1692930		orf19.14047|IPF20355.1|IPF3488.1|Contig4-3006_0003|orf6.8876|CA5942|CaO19.6755|DLD2|CaO19.14047	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1693713	1694400	+	orf19.6754	1693713	1694400	1	1693713	1694400	1693773	1694354		orf19.14046|IPF20417.1|IPF3490.2|Contig4-3006_0006|orf6.8877|CA5943|CaO19.14046|CaO19.6754|IPF3490	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1693993	1694340	-	ntar_684	1693993	1694340	1	1694340	1693993	1694185	1694051			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1694605	1695505	+	orf19.6753	1694605	1695505	2	1694605|1694816	1694736|1695505	1694721	1695378		orf19.14045|IPF20418.1|IPF3491.1|Contig4-3006_0007|orf6.8878|CA5944|CaO19.6753|CaO19.14045|IPF3491	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1695350	1696193	-	orf19.6752	1695350	1696193	1	1696193	1695350	1696153	1695449		orf19.14044|IPF20402.1|IPF3492.1|Contig4-3006_0008|orf6.8879|CA5945|RSM10|CaO19.14044|CaO19.6752|IPF3492	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1696320	1697254	+	orf19.6751	1696320	1697254	1	1696320	1697254	1696346	1697227		orf19.14043|IPF20389.1|IPF3493.1|Contig4-3006_0009|orf6.8880|CA5946|TRM7|CaO19.6751|CaO19.14043|IPF3493	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1697218	1699107	-	orf19.6749	1697218	1699107	1	1699107	1697218	1699061	1697277	KRS1	orf19.14041|IPF20344.1|IPF3495.1|Contig4-3006_0010|orf6.8882|CA5947|CaO19.14041|CaO19.6749	Putative tRNA-Lys synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophages; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1699209	1700511	+	orf19.6748	1699209	1700511	1	1699209	1700511	1699360	1700346		orf19.14040|IPF20385.1|IPF3496.1|Contig4-3006_0011|orf6.8883|CA5948|CaO19.14040|CaO19.6748|IPF3496	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1700559	1701888	+	orf19.6747	1700559	1701888	2	1700559|1700690	1700622|1701888	1700608	1701604		orf19.14039|IPF20391.1|IPF3498.1|Contig4-3006_0012|orf6.8884|CA5949|CaO19.6747|CaO19.14039|IPF3498	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1702019	1702909	+	orf19.6745	1702019	1702909	1	1702019	1702909	1702073	1702819	TPI1	orf19.14037|TPIS|IPF20404.1|IPF3499.1|Contig4-3006_0013|orf6.8886|CA5950|CaO19.14037|CaO19.6745	Triose-phosphate isomerase; glycolysis/gluconeogenesis; antigenic in mouse or human; mutation affects filamentous growth; biofilm-induced; macrophage-downregulated protein; detected by mass spec in exponential and stationary phase culture [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1702752	1703919	-	orf19.6744	1702752	1703919	1	1703919	1702752	1703806	1702835		orf19.14036|IPF20382.1|IPF3500.1|Contig4-3006_0014|orf6.8887|CA5951|CaO19.14036|CaO19.6744|IPF3500	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1704208	1706959	+	orf19.6742	1704208	1706959	1	1704208	1706959	1704388	1706694		orf19.14034|IPF20315.1|IPF3503.1|Contig4-3006_0018|orf6.8889|CA5952|CaO19.14034|FCP1|CaO19.6742|IPF3503	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1707635	1709232	+	orf19.6741	1707635	1709232	1	1707635	1709232	1707757	1709049		orf19.14033|IPF20373.1|IPF3506.2|Contig4-3006_0020|orf6.8890|CA5953|CaO19.6741|CaO19.14033|IPF3506	Predicted ORF in Assemblies 19, 20 and 21; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1709279	1710747	+	orf19.6740	1709279	1710747	1	1709279	1710747	1709407	1710747		orf19.14032|IPF20367.1|IPF3508.1|Contig4-3034_0024|Contig4-3034_0026|orf6.8891|CA5954|CaO19.14032|PRP19|CaO19.6740|IPF3508	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1710853	1712826	+	orf19.6739	1710853	1712826	1	1710853	1712826	1710894	1712744		orf19.14031|IPF20339.1|IPF3510.1|Contig4-3034_0023|orf6.8892|CA5955|CaO19.6739|CaO19.14031|IPF3510	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1713093	1714827	+	orf19.6738	1713093	1714827	2	1713093|1713359	1713264|1714827	1713200	1714754	VAN1	orf19.14030|IPF20361.1|IPF3512.2|Contig4-3034_0022|orf6.8893|CA5956|CaO19.14030|CaO19.6738|IPF3512.1	Member of Mnn9p family; similar to S. cerevisiae Van1p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1714834	1715160	-	snr52	1714834	1715160	1	1715160	1714834	1715013	1714855	SNR52	snR52.2	Putative ortholog of S. cerevisiae C/D snoRNA with role in 2'-O-methylation of 5S rRNA; gene transcribed by RNA Pol III [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1715762	1715834	+	tr(ucu)5	1715762	1715834	1	1715762	1715834				tR(UCU)5.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1715843	1715930	+	tf(gaa)5	1715843	1715930	2	1715843|1715895	1715879|1715930				tF(GAA)5.2	tRNA-Phe predicted by tRNAscan-SE; has atypical tertiary T15A48 basepair (rather than R15Y48 basepair) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1715996	1717273	-	orf19.6737	1715996	1717273	1	1717273	1715996	1716965	1716099		orf19.14029|IPF6050|IPF20392.1|IPF6050.1|Contig4-3034_0021|orf6.6886|CA4360|CaO19.14029|CaO19.6737	Protein not essential for viability; greater mRNA abundance observed in a cyr1, ras1, or efg1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1717569	1718066	+	ntar_685	1717569	1718066	1	1717569	1718066					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1719264	1721374	-	orf19.6736	1719264	1721374	1	1721374	1719264	1721338	1719449		orf19.14028|IPF20338.1|IPF6054.1|Contig4-3034_0015|Contig4-3034_0016|orf6.6885|CA4359|FMP38|CaO19.6736|CaO19.14028|IPF6054	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1729766	1732553	+	orf19.6734	1729766	1732553	1	1729766	1732553	1730059	1732305	TCC1	orf19.14026|IPF20318.1|IPF6067.1|Contig4-3034_0002|orf6.6883|CA4358|CaO19.14026|CaO19.6734|IPF6067	Protein involved in regulation of filamentous growth and virulence; interacts with Tup1p; acts in transcriptional regulation of hypha-specific genes; contains 4 tetratricopeptide repeat (TPR) motifs; flucytosine repressed; Tbp1p-activated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1732343	1733421	-	orf19.6732	1732343	1733421	1	1733421	1732343	1733288	1732422		orf19.14024|IPF20396.1|IPF19800.1|orf6.6881|CA4357|CaO19.6732|CaO19.14024|IPF19800	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1733495	1734002	+	orf19.6731.1	1733495	1734002	1	1733495	1734002	1733543	1733812		IPF20303.1|IPF3651.2|Contig4-1872_0001|CA4356|IPF3651	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1734033	1734547	+	orf19.6731	1734033	1734547	1	1734033	1734547	1734057	1734389		orf19.14023|IPF20437.1|IPF3650.1|Contig4-1872_0003|orf6.6880|CaO19.14023|CaO19.6731	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1734177	1734718	-	ntar_686	1734177	1734718	1	1734718	1734177	1734718	1734482			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1734745	1735395	+	orf19.6730	1734745	1735395	1	1734745	1735395	1734745	1735395		orf19.14022|IPF20408.1|IPF3649.1|Contig4-1872_0004|orf6.6879|CA4355|CaO19.6730|CaO19.14022|IPF3649	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1735431	1739249	+	orf19.6729	1735431	1739249	1	1735431	1739249	1735431	1739156	TIP120	orf19.14021|IPF3647|IPF20453.1|IPF3647.2|Contig4-1872_0006|orf6.6878|CA4354|CaO19.6729|CaO19.14021	Protein similar to human and rat TBP-binding transcription regulatory protein; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1739073	1740504	-	orf19.6727	1739073	1740504	1	1740504	1739073	1740504	1739191	RIT1	orf19.14019|IPF20372.1|IPF3645.1|orf6.6876|CA4353|CaO19.6727|CaO19.14019|IPF3645	Putative initiator tRNA methionine ribosyltransferase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1740573	1741571	-	orf19.6726	1740573	1741571	1	1741571	1740573	1741571	1740573		orf19.14018|IPF20383.1|IPF3642.1|Contig4-3073_0021|orf6.6875|CA4352|CaO19.6726|SPT2|CaO19.14018|IPF3642	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1741696	1743425	-	orf19.6724	1741696	1743425	1	1743425	1741696	1743279	1741747	FUM12	orf19.14016|orf19.14017|orf6.6873|FUM12.3|IPF20395.1|IPF3640.2|IPF20327.1|IPF18225.1|IPF20416.1|IPF3641.2|orf6.6874|CA4349|CA4350|CA4351|orf19.6724.1|orf19.6725|FUM1|CaO19.14016|CaO19.6724|FUM12.5f	Protein described as similar to fumarate hydratase, enzyme of citric acid cycle; fluconazole-downregulated; downregulated by Efg1p; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1743535	1745593	-	orf19.6723	1743535	1745593	1	1745593	1743535	1745592	1743535		orf19.14015|IPF20328.1|IPF3638.2|orf6.6872|CA4348|CaO19.6723|CaO19.14015|IPF3638	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=C scenario_last_exon=C]
Ca21chr3	1745689	1747993	+	orf19.6722	1745689	1747993	1	1745689	1747993	1745729	1747858		orf19.14014|IPF20323.1|IPF3636.2|orf6.6871|RAD4|CA4347|CaO19.6722|CaO19.14014|IPF3636	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Rad4p; down-regulation associated with azole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1748319	1749083	+	orf19.6720	1748319	1749083	1	1748319	1749083	1748343	1749083		orf19.14012|IPF20405.1|IPF3634.1|Contig4-2901_0002|orf6.6869|CA4346|YDR090C|CaO19.6720|CaO19.14012|IPF3634	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ydr090cp; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr3	1748380	1749104	-	ntar_687	1748380	1749104	1	1749104	1748380	1748773	1748600			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1749192	1754214	+	orf19.6719	1749192	1754214	2	1749192|1749258	1749200|1754214	1749198	1754030		orf19.14011|IPF20425.1|IPF3633.1|Contig4-2901_0003|Contig4-2901_0006|orf6.6868|CA4345|CaO19.14011|HIR3|CaO19.6719|IPF3633.3f|IPF3633.3	Predicted ORF in Assemblies 19, 20 and 21; intron annotated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1753952	1754972	-	orf19.6718	1753952	1754972	2	1754972|1754749	1754805|1753952	1754854	1754047		orf19.14010|IPF20410.1|IPF3631.1|Contig4-2901_0007|orf6.6867|CA4344|CaO19.6718|CaO19.14010|IPF3631	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1754940	1755789	+	orf19.6717	1754940	1755789	1	1754940	1755789	1754955	1755734		orf19.14009|IPF20401.1|IPF3630.1|Contig4-2901_0009|orf6.6866|CA4343|CaO19.14009|CaO19.6717|IPF3630	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1755830	1757505	+	orf19.6716	1755830	1757505	1	1755830	1757505	1755847	1757271	ABD1	orf19.14008|CCM1|IPF20363.1|IPF3629.1|Contig4-2901_0011|orf6.6865|CA4342|CaO19.6716|CaO19.14008|IPF3629	RNA (guanine-N7-)-methyltransferase, SAM-dependent; methylates mRNA 5' cap; binds phosphorylated RNA Pol II C-terminal domain peptide; does not bind mRNA TPase and mRNA GTase (Cet1p and Cgt1p); functional homolog of S. cerevisiae Abd1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1757716	1757907	-	ntar_688	1757716	1757907	1	1757907	1757716					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1757970	1758278	-	orf19.6715	1757970	1758278	1	1758278	1757970	1758278	1757970		orf19.14007|IPF20459.1|IPF27667.1|orf6.6864|CaO19.14007|CaO19.6715	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1761423	1763172	+	orf19.6713	1761423	1763172	1	1761423	1763172	1761921	1763126		orf19.14005|IPF20377.1|IPF3624.1|orf6.6862|CA4341|CaO19.14005|CaO19.6713|IPF3624	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1763317	1765320	+	orf19.6712	1763317	1765320	1	1763317	1765320	1763320	1765296		orf19.14004|IPF20331.1|IPF3621.2|Contig4-1879_0003|orf6.6861|CA4340|CaO19.6712|CaO19.14004|IPF3621	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1765389	1767029	+	orf19.6710	1765389	1767029	1	1765389	1767029	1765416	1766753	UTP9	orf19.14002|IPF20369.1|IPF3618.2|Contig4-1879_0002|orf6.6859|CA4339|CaO19.6710|CaO19.14002|IPF3618	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant; decreased expression in response to prostaglandins; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1766710	1767672	-	orf19.6709	1766710	1767672	1	1767672	1766710	1767672	1766746		orf19.14001|IPF20387.1|IPF3616.3|Contig4-1879_0001|orf6.6858|CA4338|CaO19.14001|CaO19.6709|IPF3616.3eoc|IPF3616|IPF3616.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	1767671	1767897	+	ntar_689	1767671	1767897	1	1767671	1767897	1767671	1767841			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1767930	1768875	-	orf19.6170	1767930	1768875	1	1768875	1767930	1768853	1767942		IPF3418.1|orf6.5391|CA3193|BIK1|CaO19.6170|IPF3418.5eoc|IPF3418	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1768943	1771568	-	orf19.6171	1768943	1771568	1	1771568	1768943	1771526	1768974		IPF3423.1|Contig4-3079_0004|orf6.5392|CA3194|CaO19.6171|NUP159|IPF3425	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1772150	1773384	+	orf19.6173	1772150	1773384	1	1772150	1773384	1772316	1773323	STD1	IPF3426.1|Contig4-3079_0005|orf6.5394|CA3195|CaO19.6173|IPF3426	Protein described as transcription factor involved in control of glucose-regulated gene expression; repressed by Rgt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1773047	1773950	-	orf19.6175	1773047	1773950	1	1773950	1773047	1773948	1773325		IPF3428.1|Contig4-3079_0006|orf6.5396|CA3196|CaO19.6175|IPF3428	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1773991	1775485	-	orf19.6176	1773991	1775485	1	1775485	1773991	1775464	1774025	SEC61	orf6.5397|IPF3431.1|Contig4-3079_0009|CA3197|CaO19.6176	Essential protein; expected to act in protein translocation from the endoplasmic reticulum: similar to S. cerevisiae Sec61p; chimeric mutant partially functionally complements S. cerevisiae sec61 defects; 10 transmembrane regions predicted [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1775667	1776077	+	orf19.6177	1775667	1776077	1	1775667	1776077	1775684	1776010		IPF3432.1|Contig4-3079_0010|orf6.5398|CA3198|CaO19.6177|IPF3432	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1776141	1777192	+	orf19.6178	1776141	1777192	1	1776141	1777192	1776158	1777153	FBP1	IPF3435.1|Contig4-3079_0011|orf6.5399|CA3199|CaO19.6178	Fructose-1,6-bisphosphatase, a key enzyme of gluconeogenesis; involved in the carbohydrate metabolism; regulated by Efg1p, Ssn6p; upregulated upon phagocytosis, effecting switch from glycolysis to gluconeogenesis in macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1776233	1776925	-	orf19.6179	1776233	1776925	1	1776925	1776233	1776925	1776233		IPF3434.1|orf6.5400	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1777228	1778538	+	orf19.6180	1777228	1778538	1	1777228	1778538	1777228	1778538		IPF3439.1|Contig4-3079_0015|orf6.5401|YDL054C|CA3200|MCH1|CaO19.6180|IPF3439	Protein similar to Pichia anomala YDL054c and S. cerevisiae Ydl054cp; transmembrane regions predicted [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1778398	1780663	-	orf19.6182	1778398	1780663	1	1780663	1778398	1780657	1778525		ZCF34|IPF3443.1|Contig4-3079_0016|orf6.5403|CA3201|CaO19.6182|IPF3444.3f	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1778654	1778959	+	orf19.6181	1778654	1778959	1	1778654	1778959	1778654	1778959		orf6.5402	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1780669	1781127	-	orf19.6184	1780669	1781127	1	1781127	1780669	1781127	1780669		IPF3444.1|Contig4-3079_0017|orf6.5405|CA3202|CaO19.6184|IPF3444.5f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1781096	1781493	+	orf19.6183	1781096	1781493	1	1781096	1781493	1781190	1781456		IPF3445.1|orf6.5404|CA3203|CaO19.6183|TIM8|IPF3445	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1781415	1782517	-	orf19.6186	1781415	1782517	1	1782517	1781415	1782517	1781453		IPF3446.1|Contig4-3079_0019|orf6.5407|CA3204|CaO19.6186|IPF3446	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr3	1782319	1784424	+	orf19.6187	1782319	1784424	2	1782319|1783357	1783304|1784424	1782399	1784424		IPF3454.2|Contig4-3079_0021|orf6.5408|CA3206|CaO19.6187|IPF3454	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1782399	1783322	+	orf19.6185	1782399	1783322	1	1782399	1783322	1782399	1783322		IPF3448|IPF3448.1|Contig4-3079_0020|orf6.5406|CA3205|IND1|CaO19.6185	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1783353	1783670	-	orf19.6188	1783353	1783670	1	1783670	1783353	1783670	1783353		orf6.5409|CaO19.6188	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1784464	1785266	+	orf19.6189	1784464	1785266	1	1784464	1785266	1784472	1785185		IPF3456.2|Contig4-3079_0022|orf6.5410|CA3207|CaO19.6189|FMP22|IPF3456	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr3	1785155	1786311	-	orf19.6190	1785155	1786311	1	1786311	1785155	1786287	1785199	SRB1	VIG9|PSA1|IPF3458.1|Contig4-3079_0023|orf6.5411|CA3208|CaO19.6190	Essential GDP-mannose pyrophosphorylase; synthesizes GDP-mannose for protein glycosylation; functional homolog of S. cerevisiae Psa1p; at surface of yeast-form, not hyphal, cells; alkaline upregulated; induced on adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr3	1786471	1786870	+	ntar_690	1786471	1786870	1	1786471	1786870	1786471	1786737			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1787316	1787612	-	ntar_691	1787316	1787612	1	1787612	1787316	1787504	1787316			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1787715	1788224	-	orf19.6191	1787715	1788224	1	1788224	1787715	1788224	1787715	TLO8	IPF3460.1|IPF3461.1|Contig4-2278_0004|Contig4-3079_0026|orf6.5412|CA3210|TLO8b|CaO19.6191|CTA223|CTA210.5f	Member of a family of telomere-proximal genes of unknown function; may be spliced in vivo [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr3	1788079	1788399	+	ntar_692	1788079	1788399	1	1788079	1788399	1788079	1788309			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1793516	1794531	+	ntar_693	1793516	1794531	1	1793516	1794531	1793789	1794034			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1794520	1794926	+	ntar_694	1794520	1794926	1	1794520	1794926	1794520	1794738			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1795409	1796005	+	ntar_695	1795409	1796005	1	1795409	1796005	1795496	1795678			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1795919	1796346	-	orf19.6192	1795919	1796346	1	1796346	1795919	1796320	1795919		IPF19977.1|Contig4-2081_0001|orf6.5413|CA3211|CaO19.6192|IPF19977	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr3	1796658	1797334	-	ntar_696	1796658	1797334	1	1797334	1796658	1797168	1797013			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr3	1797817	1798258	+	ntar_697	1797817	1798258	1	1797817	1798258	1797935	1798165			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	983	1660	+	orf19.362	983	1660	1	983	1660	983	1660	TLO9	orf19.7994|IPF26943.1|IPF10947.1|orf6.321|CA0050|CTA212|CaO19.362|CaO19.7994|CTA25	Member of a family of telomere-proximal genes of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	2146	2572	-	ntar_698	2146	2572	1	2572	2146					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	2837	3916	+	orf19.364	2837	3916	1	2837	3916	2845	3891		orf19.7996|IPF19887.2|IPF29859.1|Contig4-2956_0004|orf6.2055|orf6.323|CA0876|VMA6|CaO19.364|IPF19887.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	3812	4952	-	orf19.366	3812	4952	1	4952	3812	4904	3894		orf19.7997|IPF10954.1|IPF29860.1|Contig4-2956_0003|orf6.2056|CA6174|RAD17|CaO19.366	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	5020	7444	+	orf19.367	5020	7444	1	5020	7444	5033	7435	CNH1	orf19.8001|IPF10959.2|IPF29854.1|Contig4-2956_0001|orf6.2060|orf6.2059|CA0877|CaO19.367|CA0878|CNH1.3f|IPF18845.1|CNH1.5f	Na+/H+ antiporter; required for wild-type growth, cell morphology, and virulence in a mouse model of systemic infection; not transcriptionally regulated by NaCl; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	7507	8355	+	orf19.371	7507	8355	1	7507	8355	7507	8355		orf19.8003|IPF19542.1|IPF19543.2|orf6.2062|CA0879|CaO19.371|IPF19542.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	8369	9107	+	orf19.372	8369	9107	1	8369	9107	8369	8995		orf19.8004|IPF19494.2|IPF16966.2|orf6.2063|orf6.7|CA0880|CaO19.8004|CaO19.372|IPF19542.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	8784	11324	-	orf19.374	8784	11324	1	11324	8784	11315	8937		orf19.8006|IPF16965.2|IPF29855.1|orf6.2065|CA0881|CaO19.374|CaO19.8006|IPF16965	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	11383	12630	-	orf19.376	11383	12630	1	12630	11383	12630	11383		orf19.8008|IPF26941.1|IPF12110.2|Contig4-1877_0001|orf6.2067|orf6.65|CA0008|CaO19.376|BDA1|IPF12110	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	12792	14307	+	orf19.377	12792	14307	2	12792|12955	12902|14307	12792	14307	PHR3	orf19.13077|orf19.8010|IPF12107.2|IPF12108.3|IPF21539.1|IPF18452.2|Contig4-1877_0003|Contig4-2202_0005|orf6.2069|orf6.66|orf6.4501|CA0882|orf19.5632|CaO19.8010|CaO19.377	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	13063	15704	-	orf19.5633	13063	15704	1	15704	13063	15704	14304		orf19.13078|orf19.8011|IPF21530.1|IPF12105.2|Contig4-2202_0002|orf6.2070|orf6.4502|CA2555|orf19.378|CaO19.5633|CaO19.13078|IPF12105	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	15790	17454	-	orf19.5634	15790	17454	1	17454	15790	17454	15790	FRP1	orf19.13079|orf6.4503|FRE5|IPF21526.1|IPF12102.2|Contig4-2202_0003|Contig4-2202_0004|CA2556|CaO19.13079|CaO19.5634	Predicted ferric reductase; gene alkaline-induced directly by Rim101p; iron-chelation-induced by CCAAT-binding factor (with Hap43p); fluconazole-downregulated; ciclopirox olamine induced; colony morphology-related gene regulation by Ssn6p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	16273	16938	+	ntar_699	16273	16938	1	16273	16938	16622	16750			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	17106	17357	+	ntar_700	17106	17357	1	17106	17357					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	17801	18502	+	orf19.5635	17801	18502	1	17801	18502	17801	18460	PGA7	orf19.13080|IPF21547.1|IPF12101.1|CRW3|Contig4-1570_0002|orf6.4504|CA2557|CaO19.5635|CaO19.13080|IPF12101	Protein described as a putative precursor of a hyphal surface antigen; putative GPI-anchor; induced by ciclopirox olamine, ketoconazole, or by Rim101p at pH 8; regulated during planktonic growth; induced during cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	19655	20457	+	orf19.5636	19655	20457	1	19655	20457	19713	20438	RBT5	orf19.13081|orf6.4505|IPF21544.1|IPF19952.1|CA2558|CaO19.5636|CaO19.13081	GPI-anchored cell wall protein involved in hemoglobin utilization; expression is regulated by Rfg1p, Rim101p, Tbf1p, iron; repressed by Sfu1p, Hog1p, Tup1p; induced by serum, alkaline pH, ketoconazole, ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	21032	23708	-	orf19.5639	21032	23708	1	23708	21032	23694	21178	HIS4	orf19.13084|IPF21508.1|IPF12359.2|Contig4-2558_0003|orf6.4508|CA2559|CaO19.13084|CaO19.5639	Multifunctional enzyme that catalyzes three steps of histidine biosynthesis, with phosphoribosyl-AMP cyclohydrolase, phosphoribosyl-ATP diphosphatase, and histidinol dehydrogenase activities; required for wild-type adhesion to human calls [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	23796	25667	-	orf19.5640	23796	25667	1	25667	23796	25631	23853	PEX5	orf19.13085|IPF21521.1|IPF12357.2|Contig4-2558_0005|orf6.4509|CA2560|CaO19.5640|CaO19.13085	Protein of the Pex5p family; required for PTS1-mediated peroxisomal protein import, fatty acid beta-oxidation; similar to S. cerevisiae Pas10p peroxisomal targeting receptor; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	25836	27213	-	orf19.5641	25836	27213	1	27213	25836	27186	25876	CAR2	orf19.13086|IPF21531.1|IPF12355.2|Contig4-2558_0006|orf6.4510|CaO19.5641|CaO19.13086|CA2561	Alkaline upregulated; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	27469	28049	+	orf19.5642	27469	28049	1	27469	28049	27530	27943		orf19.13087|IPF21553.1|IPF19953.1|Contig4-2558_0008|orf6.4511|CA2562|CaO19.13087|CaO19.5642|IPF19953	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	28113	29696	+	orf19.5643	28113	29696	1	28113	29696	28147	29691	ECM7	orf19.13088|IPF21524.1|IPF12129.2|Contig4-2558_0010|orf6.4512|CA2563|CaO19.13088|CaO19.5643	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	29708	30728	+	orf19.5644	29708	30728	1	29708	30728	29746	30663		orf19.13089|IPF21540.1|IPF12127.2|Contig4-2558_0011|orf6.4513|CA2564|CaO19.5644|CaO19.13089|IPF12127	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	30567	32126	-	orf19.5645	30567	32126	1	32126	30567	31982	30660	MET15	orf19.13090|MET25|IPF21534.1|IPF12125.2|orf6.4514|CA2565|CaO19.13090|CaO19.5645	O-acetylhomoserine O-acetylserine sulfhydrylase; involved in sulfur amino acid biosynthesis; immunogenic; Hog1p, biofilm, possibly adherence-induced; brown colony color of homozygous mutant in Pb(2+) medium is visual selection marker [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	32456	33407	+	orf19.5646	32456	33407	1	32456	33407	32585	33277		orf19.13091|IPF21549.1|IPF12122.2|Contig4-2460_0002|orf6.4515|CA2566|CaO19.5646|CaO19.13091|IPF12122	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	33291	34818	-	orf19.5647	33291	34818	2	34818|34461	34541|33291	34763	33383	SUB2	orf19.13092|IPF18224.2|IPF12120.1|Contig4-2460_0004|orf6.4516|CA2568|orf19.5647.2|CA2567|SUB2.3f	Transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	34782	35390	+	orf19.5648	34782	35390	1	34782	35390	34782	35390		orf19.13093|IPF12119.3|IPF12117.1|Contig4-2460_0008|orf6.4517|orf6.6888|CA2569|CaO19.5648|IPF12117	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	35314	36258	-	orf19.5650	35314	36258	1	36258	35314	36235	35411	PRO3	orf19.13095|IPF21542.1|IPF12114.2|Contig4-2460_0009|orf6.4519|orf6.6890|CA2570|CaO19.5650	Protein induced during the mating process; alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	35408	35975	+	orf19.5649	35408	35975	1	35408	35975	35436	35975		IPF18222.2|IPF12115.2|orf6.4518|orf6.6889	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	36604	39162	+	orf19.5651	36604	39162	1	36604	39162	36910	39081		orf19.13096|IPF16104.2|IPF18451.2|Contig4-3054_0028|orf6.4520|orf6.6891|CA4361|CaO19.5651|IPF16104	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	39408	41474	+	orf19.5653	39408	41474	2	39408|39994	39583|41474	39465	41389	ATP2	orf19.13098|IPF21527.1|IPF5264.1|Contig4-3054_0025|orf6.6893|CA4362|CaO19.5653|CaO19.13098	Protein described as a similar to F1 beta subunit of F1F0 ATPase complex; antigenic in human, mouse; transcription upregulated in response to ciclopirox olamine; flucytosine induced; caspofungin repressed; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	41620	43155	+	orf19.5654	41620	43155	2	41620|41722	41668|43155	41651	43041		orf19.13099|IPF21528.1|IPF5265.1|Contig4-3054_0024|orf6.6894|CaO19.13099|STE24|CaO19.5654|CA4363	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	43142	44715	-	orf19.5655	43142	44715	3	44715|43992|43847	44079|43989|43142	44715	43184		orf19.13100|orf19.13101|IPF21550.1|IPF5266.2|Contig4-3054_0022|Contig4-3054_0023|orf6.6895|orf6.6896|CA4365|orf19.5656|IPF5268|CA4364|IPF5268.exon2|IPF5268.exon1|IPF5268.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=I]
Ca21chr4	45028	48100	-	orf19.5657	45028	48100	1	48100	45028	48100	45137	SWI1	orf19.13102|IPF21507.1|IPF5271.2|Contig4-3054_0020|orf6.6897|CA4366|SWC1|CaO19.5657|CaO19.13102	Protein involved in transcription regulation; ortholog of S. cerevisiae Swi1p, which is a subunit of the SWI/SNF chromatin remodeling complex; interacts with Snf2p; SWI/SNF complex is essential for hyphal growth and virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	48307	49314	-	orf19.5658	48307	49314	1	49314	48307	49314	48307	MNN10	orf19.13103|IPF21536.1|IPF5272.1|Contig4-3054_0018|orf6.6898|CA4367|CaO19.13103|CaO19.5658	Protein with similarity to mannosyltransferases; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	49344	49995	+	ntar_701	49344	49995	1	49344	49995	49344	49664			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	49495	50546	-	orf19.5660	49495	50546	2	50546|50402	50473|49495	50512	49534		orf19.13105|IPF21541.1|IPF5275.1|Contig4-3054_0014|Contig4-3054_0015|orf6.6900|CA4368|PEX10|CaO19.5660|CaO19.13105|PEX10.3f|PEX10.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	50662	51271	-	orf19.5660.1	50662	51271	1	51271	50662	51211	50930		IPF21567.1|IPF5277.1|Contig4-3054_0013|CA4369|TIM11	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	51470	52603	+	orf19.5661	51470	52603	1	51470	52603	51477	52574	PTC7	orf19.13106|YHR76|IPF21537.1|IPF5279.1|Contig4-3054_0012|orf6.6901|CA4370|CaO19.5661|CaO19.13106|IPF5279	Protein phosphatase, type 2C; has S/T phosphatase activity, Mn2+/Mg2+ dependent; predicted membrane-spanning segment and mitochondrion-targeting signal [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	52648	54077	+	orf19.5662	52648	54077	1	52648	54077	52683	54020	PEP7	orf19.13107|IPF21533.1|IPF5281.1|Contig4-3054_0011|orf6.6902|CA4371|VAC1|CaO19.5662|CaO19.13107	Vesicle transport protein; acts in endosomal transport; roles in metal ion resistance, virulence, adhesion, hyphal growth, chlamydospore formation; similar to S. cerevisiae Pep7p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	54019	55755	-	orf19.5663	54019	55755	1	55755	54019	55317	54082		FSP1|orf19.13108|IPF21535.1|IPF5282.1|Contig4-3054_0010|orf6.6903|CA4372|CaO19.5663|CaO19.13108|IPF5282	Protein of unknown function; null mutation confers resistance to azoles and terbinafine; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	56428	58486	+	orf19.5664	56428	58486	1	56428	58486	56584	58407	HOF1	orf19.13109|IPF21517.1|IPF5287.2|Contig4-3054_0008|orf6.6904|CA4373|CaO19.13109|CaO19.5664|IPF5287	Protein not essential for viability; similar to S. cerevisiae Hof1p, which is a protein localized to the bud neck and required for cytokinesis; periodic mRNA expression, peak at cell-cycle G2/M phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	58132	58367	-	ntar_702	58132	58367	1	58367	58132					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	58542	59641	+	orf19.5665	58542	59641	1	58542	59641	58588	59571		orf19.13110|IPF21538.1|IPF5288.2|Contig4-3054_0007|orf6.6905|CA4374|CaO19.5665|CaO19.13110|IPF5288	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	59685	60336	+	orf19.5666	59685	60336	1	59685	60336	59717	60157		orf19.13111|IPF21552.1|IPF11309.2|Contig4-3054_0006|orf6.6906|CA4375|CaO19.13111|CaO19.5666|IPF11309	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	60908	63422	+	orf19.5667	60908	63422	1	60908	63422	60947	63340	MNR2	orf19.13112|IPF21510.1|IPF11307.2|Contig4-3054_0004|orf6.6907|CA4376|CaO19.5667|CaO19.13112|IPF11307	Putative ion transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	63094	63483	-	ntar_703	63094	63483	1	63483	63094	63483	63313			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	63468	64204	+	orf19.5669	63468	64204	1	63468	64204	63561	64121		orf19.13114|IPF21546.1|IPF11301.1|Contig4-3054_0003|orf6.6909|CA4377|CaO19.13114|YET1|CaO19.5669|IPF11301	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	64117	66795	-	orf19.5671	64117	66795	1	66795	64117	66706	64271		orf19.13116|IPF21511.1|IPF11299.2|Contig4-3054_0001|orf6.6911|CA4378|CaO19.5671|CaO19.13116|IPF11299	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	67702	71836	-	orf19.5673	67702	71836	1	71836	67702	71749	69506	OPT7	orf19.13118|IPF21514.1|IPF12736.2|Contig4-2948_0004|orf6.6913|OPT3|CA4380|CaO19.5673|CaO19.13118|IPF12736	Putative oligopeptide transporter; possibly transports GSH and related compounds; induced upon biofilm formation; Hog1p-induced; expression of OPT6, -7, or -8 does not suppress defect of mutant lacking Opt1p, -2p, or -3p; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	67942	69437	+	orf19.5672	67942	69437	1	67942	69437	67995	69437	MEP2	orf19.13117|IPF21529.1|IPF12738.2|Contig4-2948_0002|orf6.6912|CA4379|CaO19.13117|CaO19.5672	Ammonium permease and regulator of nitrogen starvation-induced filamentation; 11 predicted transmembrane regions; in low nitrogen cytoplasmic C-terminus activates Ras/cAMP and MAPK signal transduction pathways to induce filamentation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr4	69775	70013	+	ntar_704	69775	70013	1	69775	70013					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	70269	70466	+	ntar_705	70269	70466	1	70269	70466	70269	70457			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	71274	71555	+	ntar_706	71274	71555	1	71274	71555	71301	71462			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	72795	73547	-	orf19.5674	72795	73547	1	73547	72795	73547	72795	PGA10	orf19.13119|RBT51|RBT8|IPF21543.1|IPF20169.1|Contig4-2948_0005|orf6.6914|CA4381|CRW2|CaO19.5674|CaO19.13119|IPF20169	Plasma membrane protein involved in heme-iron utilization; allows utilization of hemin and hemoglobin as iron sources in host tissues; predicted GPI anchor; hypoxia, ketoconazole, ciclopirox, or hyphal-induced; upregulated by Rim101p at pH8 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	74088	77709	-	orf19.5675	74088	77709	1	77709	74088	77579	74271		orf19.13120|IPF21563.1|IPF8576.2|Contig4-2948_0008|orf6.6915|CA4382|CaO19.5675|RIS1|CaO19.13120|IPF8576	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	78004	80344	-	orf19.5676	78004	80344	1	80344	78004	80171	78360		orf19.13121|IPF8573.1|IPF27959.1|Contig4-2948_0010|orf6.6916|CA4383|CaO19.13121|CaO19.5676|IPF8573	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	80491	81318	+	ntar_707	80491	81318	1	80491	81318					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	81343	83536	-	ntar_708	81343	83536	1	83536	81343	83067	82807			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	81578	83551	+	orf19.5677	81578	83551	1	81578	83551	81578	83551	DUR4	orf19.13122|IPF8570.2|IPF27956.1|Contig4-2948_0014|orf6.6917|CA4384|DUR34|CaO19.5677|CaO19.13122	[NOT TRANSCRIBED?] Putative urea permease; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	84045	85634	+	orf19.5678	84045	85634	1	84045	85634	84045	85634		orf19.13123|IPF21548.1|IPF8567.3|orf6.6918	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	86247	89344	+	orf19.4191.1	86247	89344	1	86247	89344	86317	89235		IPF23078.1|IPF7996.1|Contig4-2846_0013|CA1942|HCT5.3eoc	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	89227	90152	-	orf19.4191	89227	90152	1	90152	89227	90017	89388	RLP24	orf19.11668|IPF23102.1|IPF7998.1|Contig4-2846_0001|orf6.3648|CA1941|CaO19.4191|CaO19.11668|IPF7998	Predicted ORF in Assemblies 19, 20 and 21; essential; S. cerevisiae ortholog is essential; heterozygous mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	90347	91149	+	orf19.4190	90347	91149	1	90347	91149	90450	90923		orf19.11667|IPF23106.1|IPF7999.1|Contig4-2846_0003|orf6.3647|CA1940|PAM18|CaO19.11667|CaO19.4190|IPF7999	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	91409	92485	-	orf19.4189	91409	92485	1	92485	91409	92485	91409		orf19.11666|IPF23094.1|IPF8000.2|Contig4-2846_0004|orf6.3646|CA1939|CaO19.4189|CaO19.11666|IPF8000	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr4	93587	96843	-	orf19.4188	93587	96843	1	96843	93587	96782	93729	NMD5	orf19.11665|IPF23113.1|IPF8002.2|Contig4-2846_0007|orf6.3645|CA1938|CaO19.4188|CaO19.11665	Protein not essential for viability; similar to S. cerevisiae Nmd5p, which is involved in protein-nucleus import; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	97156	97327	-	ntar_709	97156	97327	1	97327	97156					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	97328	97398	-	tg(ccc)1	97328	97398	1	97398	97328				tG(CCC)1.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	97488	98929	-	orf19.4187	97488	98929	1	98929	97488	98893	97574		orf19.11664|IPF23092.1|IPF8006.2|Contig4-2846_0008|orf6.3644|CA1937|MMM1|CaO19.4187|CaO19.11664	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	99068	100587	-	orf19.4186	99068	100587	1	100587	99068	100504	99131	PCT1	orf19.11663|IPF23090.1|IPF8007.2|Contig4-2846_0009|orf6.3643|CA1936|CaO19.4186|CaO19.11663	Putative choline-phosphate cytidylyl transferase, antigenic during human oral infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	100703	101721	+	orf19.4185	100703	101721	1	100703	101721	100986	101441		orf19.11662|IPF23105.1|IPF19936.1|Contig4-2846_0011|orf6.3642|CA1935|CaO19.11662|CaO19.4185|IPF19936	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	101440	103837	-	orf19.4184	101440	103837	1	103837	101440	103606	101597		orf19.11660|IPF11891.2|IPF28501.1|Contig4-2846_0012|orf6.3641|orf6.6078|CA3734|YAP180|CaO19.4184|YAP1802|CA1934|YAP1802.3eoc|IPF8015.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	102138	102377	+	ntar_710	102138	102377	1	102138	102377					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	104048	104264	+	ntar_711	104048	104264	1	104048	104264					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	104302	107110	-	orf19.4183	104302	107110	1	107110	104302	107085	104422	MUC1	orf19.11659|IPF11897.2|IPF28500.1|Contig4-2567_0006|Contig4-2567_0007|Contig4-2567_0008|orf6.6077|CA3733|CaO19.4183|IPF11897	Protein not essential for viability; similar to S. cerevisiae Muc1p, which is a cell surface glycoprotein involved in filamentous growth; decreased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	107237	108479	+	orf19.4182	107237	108479	2	107237|107490	107422|108479	107346	108402		orf19.11658|IPF23096.1|IPF11898.2|Contig4-2567_0004|orf6.6076|CA3732|CaO19.11658|CaO19.4182|IPF11898	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	108327	108972	-	orf19.4181	108327	108972	1	108972	108327	108930	108421	SPC2	orf19.11657|IPF23103.1|IPF11899.1|Contig4-2567_0003|orf6.6075|CA3731|CaO19.4181|CaO19.11657	Transcription is induced upon filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	109114	110078	-	orf19.4180	109114	110078	1	110078	109114	110013	109399		orf19.11656|IPF23101.1|IPF11900.1|Contig4-2567_0002|orf6.6074|CA3730|SEC72|CaO19.11656|CaO19.4180|IPF11900	Protein described as component of ER protein-translocation complex; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	110388	110918	+	orf19.4179	110388	110918	1	110388	110918	110388	110918		orf19.11655|IPF23104.1|IPF11901.2|Contig4-2567_0001|orf6.6073|CA3729|CaO19.11655|CaO19.4179|IPF11901	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	111241	112555	+	orf19.4177	111241	112555	1	111241	112555	111285	112454	HIS5	orf19.11653|IPF23080.1|IPF23095.1|IPF11902.2|IPF6173.2|Contig4-2228_0011|orf6.6071|CA3727|HIS5.3f|orf19.4177.1	Predicted ORF in Assemblies 19, 20 and 21; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	112656	113556	+	orf19.4176	112656	113556	1	112656	113556	112699	113439		orf19.11652|IPF23099.1|IPF6175.1|Contig4-2228_0001|orf6.6070|CA3726|MRPS17|CaO19.4176|CaO19.11652|IPF6175	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	113645	115913	+	orf19.4175	113645	115913	1	113645	115913	113653	115878	TOK1	orf19.11651|IPF23079.1|IPF6179.2|Contig4-2228_0004|Contig4-2228_0005|orf6.6069|CA3725|CaO19.11651|CaO19.4175|TOK1.3f|TOK1.3	Outwardly rectifying, noisily gated potassium channel; modulates sensitivity to human salivary histatin (Hst5); very similar to S. cerevisiae Tok1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	116142	117668	+	orf19.4174	116142	117668	1	116142	117668	116226	117587		orf19.11650|IPF23089.1|IPF6181.2|Contig4-2228_0008|orf6.6068|CA3724|CaO19.4174|CaO19.11650|IPF6181	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	117507	119173	-	orf19.4173	117507	119173	1	119173	117507	119173	117584		orf19.11649|IPF16546.1|IPF23088.1|IPF6183.2|Contig4-2948_0015|orf6.814|orf6.6067|CA3723|orf19.1174|CaO19.11649|DPH2|CaO19.4173	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	119374	120573	-	orf19.4172	119374	120573	1	120573	119374	120395	119430		orf19.11648|IPF23097.1|IPF6184.2|Contig4-2878_0001|Contig4-2878_0002|orf6.6066|CA3722|CaO19.4172|PHO133|CaO19.11648|PHO13	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	120890	123056	+	orf19.4171	120890	123056	1	120890	123056	121074	123011		orf19.11647|IPF6186.1|IPF17597.2|Contig4-2878_0005|orf6.101|orf6.6065|CA3721|CaO19.4171|IPF6186	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	123577	124577	-	ntar_712	123577	124577	1	124577	123577	123946	123812			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	124050	124874	+	orf19.4170	124050	124874	1	124050	124874	124050	124874		orf19.11646|IPF6188.1|IPF28505.1|Contig4-2878_0006|orf6.6064|CA3720|CIS309|CaO19.11646|CaO19.4170|IFL3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	124697	124943	-	ntar_713	124697	124943	1	124943	124697					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	125066	125668	-	orf19.4169	125066	125668	1	125668	125066	125653	125258		orf19.11645|IPF6190.1|IPF17810.2|Contig4-2878_0008|orf6.123|orf6.6063|CaO19.4169	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	125881	126624	+	orf19.4168	125881	126624	1	125881	126624	126015	126518		orf19.11644|IPF6191.1|IPF17808.1|Contig4-2878_0009|orf6.124|orf6.6062|CA3718|POP7|CaO19.4168	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	126471	127231	-	orf19.4167	126471	127231	1	127231	126471	127113	126574		orf19.11643|IPF6192.2|IPF17807.3|orf6.125|orf6.6061|CA3717|CaO19.4167|IPF6192	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	129892	130109	-	ntar_714	129892	130109	1	130109	129892					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	130260	130792	-	ntar_715	130260	130792	1	130792	130260					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	131821	133911	+	orf19.4166	131821	133911	1	131821	133911	131943	133832		ZCF21|orf19.11642|IPF6203.2|IPF28502.1|Contig4-2878_0017|orf6.6060|CA3716|CaO19.11642|CaO19.4166|IPF6203	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	133915	135216	-	orf19.4164	133915	135216	1	135216	133915	135159	134425		orf19.11640|IPF23100.1|IPF6205.2|Contig4-2878_0020|orf6.6058|CA3715|CaO19.4164|CaO19.11640|IPF6205	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	134988	135396	+	ntar_716	134988	135396	1	134988	135396	135197	135352			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	135451	139215	-	orf19.4163	135451	139215	1	139215	135451	138778	135560		orf19.11639|IPF16223.2|IPF28511.1|orf6.6057|CA3714|CaO19.4163|CaO19.11639|IPF16223	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	140461	142838	-	orf19.4162	140461	142838	1	142838	140461	142783	140630	MLH1	orf19.11638|IPF23081.1|IPF15970.2|Contig4-2312_0003|orf6.2626|CA1229|CaO19.4162|CaO19.11638	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	142960	144186	+	orf19.4161	142960	144186	1	142960	144186	142987	144102		orf19.11637|IPF18734.2|IPF16081.2|Contig4-2312_0002|orf6.2625|CA1228|CaO19.11637|QRI2|CaO19.4161|IPF16081	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	144077	145585	-	orf19.4160	144077	145585	1	145585	144077	145508	144156		orf19.11636|IPF23091.1|IPF16082.2|Contig4-2312_0001|orf6.2624|CA1227|QRI7|CaO19.4160|CaO19.11636|IPF16082	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	145984	147501	+	orf19.4159	145984	147501	1	145984	147501	146332	147432		orf19.11635|IPF23093.1|IPF15660.2|Contig4-1990_0003|orf6.2623|CA1226|CaO19.4159|CaO19.11635|IPF15660	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	147407	147916	-	ntar_717	147407	147916	1	147916	147407	147833	147642			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	147972	149128	+	orf19.4157	147972	149128	1	147972	149128	148176	149048	SPS20	orf19.11633|IPF23098.1|IPF15661.1|Contig4-1990_0001|orf6.2621|CA1225|CaO19.11633|SPS199|CaO19.4157	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	148616	148800	-	ntar_718	148616	148800	1	148800	148616					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	148995	149144	-	ntar_719	148995	149144	1	149144	148995					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	149310	152293	+	orf19.4711	149310	152293	1	149310	152293	149466	152171		orf19.12182|orf19.11632|IPF23108.1|IPF15662.1|IPF22557.1|IPF4435.2|Contig4-2960_0021|orf6.2620|orf6.3510|CA1224|CA1839|orf19.4156|CaO19.4711|CaO19.12182|IPF4435	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	152472	154610	-	orf19.4707	152472	154610	1	154610	152472	154610	152472		orf19.12178|orf6.3514|IPF22562.1|IPF4440.2|Contig4-2960_0019|CA1840|ASM1|CaO19.4707|CaO19.12178|IFP3	Putative secreted acid sphingomyelin phosphodiesterase; possible Kex2p substrate [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	155500	156489	-	orf19.4706	155500	156489	1	156489	155500	156363	155866		orf19.12177|IPF4443.2|IPF19339.2|Contig4-2960_0017|orf6.328|orf6.3515|CA0051|CaO19.4706|IPF4443	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type; fluconazole-induced; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	157071	157141	+	tg(ucc)2	157071	157141	1	157071	157141				tG(UCC)2.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	157223	159020	+	orf19.4705	157223	159020	1	157223	159020	157274	158917		orf19.12176|IPF19340.2|IPF4444.2|Contig4-2960_0015|orf6.327|orf6.3516|CCA1|CaO19.4705|CA1841	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	159223	163988	+	orf19.4704	159223	163988	1	159223	163988	159251	163906	ARO1	orf19.12175|IPF22652.1|IPF4446.2|Contig4-2960_0014|orf6.1758|orf6.3517|CA1842|CaO19.4704	Putative pentafunctional arom enzyme; fungal-specific (no human or murine homolog); Gcn2p-, Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	163890	164170	-	tg(gcc)5	163890	164170	1	164170	163890				tG(GCC)5.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	164295	164491	-	ntar_720	164295	164491	1	164491	164295					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	164372	164612	+	ntar_721	164372	164612	1	164372	164612					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	165066	166832	-	orf19.4703	165066	166832	1	166832	165066	166832	165126		IPF14519.1|IPF16379.2|Contig4-2960_0009|Contig4-2960_0010|orf6.3518|orf6.1755|CA6288|CaO19.4703|IPF14519.3f	Predicted ORF in Assemblies 19, 20 and 21; has similarity to mutator-like element (MULE) transposase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	166705	167702	-	orf19.4702	166705	167702	1	167702	166705	167607	166705		orf19.12172|IPF14519.1|IPF16377.2|Contig4-2960_0008|orf6.3519|orf6.1755|CA0683|CaO19.4702|IPF14519.5f|IPF14519	Predicted ORF in Assemblies 19, 20 and 21; expression regulated during planktonic growth; similarity to mutator-like element (MULE) transposase; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	168228	168298	+	tg(gcc)4	168228	168298	1	168228	168298				tG(GCC)4.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	168363	169394	+	orf19.4701	168363	169394	1	168363	169394	168396	169394		orf19.12171|IPF14514.1|IPF16375.2|orf6.1754|orf6.3520|CA0682|CaO19.4701|IPF14514	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=C scenario_last_exon=C]
Ca21chr4	169298	171727	-	orf19.4699	169298	171727	1	171727	169298	171505	169448		orf19.12169|orf19.12170|orf6.1752|IPF14511.2|IPF17016.3|Contig4-2960_0001|Contig4-2960_0003|Contig4-2960_0004|orf6.1686|orf6.1753|orf6.3521|CA6287|CA0680|orf19.4700|IPF14511.5f|IPF14511.3f|CA0681|IPF14513.2	Putative phospholipase of patatin family; similar to S. cerevisiae Ymr313p; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	172842	173144	+	ntar_722	172842	173144	1	172842	173144					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	173405	173653	+	ntar_723	173405	173653	1	173405	173653	173516	173653			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	173881	176054	+	orf19.4698	173881	176054	1	173881	176054	174443	175708	PTC8	orf19.12168|IPF22595.1|IPF15977.2|orf6.1685|CA0641|CaO19.12168|DHP99|CaO19.4698|IPF15977	Predicted type 2C protein phosphatase, serine/threonine-specific; required for hyphal growth; induced under stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	175941	191174	-	orf19.4697	175941	191174	1	191174	175941	191174	176061	MDN1	orf19.12167|IPF22610.1|IPF11189.3|Contig4-1657_0002|Contig4-1657_0003|Contig4-2496_0003|orf6.1058|orf6.1684|orf6.1709|orf6.759|CA0283|CaO19.4697|IPF18034|IPF18034.2	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	191550	191811	+	ntar_724	191550	191811	1	191550	191811					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	192187	192792	-	orf19.4691	192187	192792	1	192792	192187	192792	192187		orf19.12160|IPF17417.2|IPF11193.2|Contig4-2496_0004|orf6.1057|orf6.1708|CA0282|CaO19.4691|IPF17417	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	194291	194987	+	ntar_725	194291	194987	1	194291	194987	194291	194584			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	195209	196942	+	orf19.4690	195209	196942	1	195209	196942	195209	196942		orf19.12159|IPF17437.2|IPF14122.2|Contig4-2733_0001|orf6.1056|orf6.1770|orf6.460|CA0087|SMF11|SMF12|CaO19.4690	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr4	197042	197980	-	orf19.4689	197042	197980	1	197980	197042	197792	197148	PGA57	orf19.12158|IPF14121.2|IPF19267.2|Contig4-2733_0002|orf6.1769|orf6.461|CA6322|CaO19.4689	Putative GPI-anchored protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	199318	200488	-	orf19.4688	199318	200488	1	200488	199318	200233	199478	DAG7	orf19.12157|IPF14119.1|IPF28307.1|Contig4-2733_0007|orf6.1768|CA0689|CaO19.4688|CaO19.12157|IPF14119	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; a-specific transcription; alpha-factor induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	201618	201936	-	ntar_726	201618	201936	1	201936	201618					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	202154	206417	-	orf19.4686	202154	206417	1	206417	202154	206038	202436		orf19.12155|IPF18902.2|IPF10555.3|Contig4-2733_0012|orf6.1766|orf6.5450|CA3238|CaO19.4686|IPF10555|CA0688|IPF10555.3eoc|IPF18902.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	206684	207114	+	orf19.4685	206684	207114	1	206684	207114	206797	207114		orf19.12154|IPF22669.1|IPF28327.1|Contig4-2733_0016|orf6.5451|CaO19.4685|CaO19.12154	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr4	208041	208692	-	orf19.4684.2	208041	208692	1	208692	208041	208643	208485	RPL40B	IPF22579.1|IPF10558.1|CA3239|IPF10558	Protein with similarity to the ribosomal protein portion of S. cerevisiae Rpl40Bp; shows colony morphology-related gene regulation by Ssn6p; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	209052	214726	+	orf19.4683	209052	214726	1	209052	214726	209114	214612	MLP1	orf19.12152|IPF22637.1|IPF10559.2|Contig4-1629_0001|orf6.5453|orf6.68|CA3240|CaO19.4683|IPF10559	Protein similar to S. cerevisiae Mlp1p, which is a myosin-like protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	217149	218987	+	orf19.4682	217149	218987	1	217149	218987	217149	218987	HGT17	orf19.12151|IPF22574.1|IPF7493.1|Contig4-2949_0011|orf6.5454|CA3241|QUP3|CaO19.4682|CaO19.12151|IPF7493	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; induced at low (0.2%, compared to 2%) glucose in rich media [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	219412	222553	+	orf19.4681	219412	222553	1	219412	222553	219462	222368	RAT1	orf19.12150|IPF22542.1|IPF7491.1|Contig4-2949_0009|Contig4-2949_0010|orf6.5455|CA3242|CaO19.12150|CaO19.4681	5'-->3' exoribonuclease; similar to S. cerevisiae nuclear exoribonuclease Rat1p; suppresses S. cerevisiae kem1 mutant slow growth, mating defect, and haploid invasive growth defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	222300	223595	-	orf19.4680	222300	223595	1	223595	222300	223559	222414		orf19.12149|IPF22604.1|IPF7489.2|Contig4-2949_0008|orf6.5456|CA3243|DGK1|CaO19.12149|CaO19.4680|IPF7489	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	223078	223380	+	ntar_727	223078	223380	1	223078	223380	223078	223245			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	223764	225707	-	orf19.4679	223764	225707	1	225707	223764	225566	223860	AGP2	orf19.12148|IPF17868.3|IPF7487.2|Contig4-2949_0007|orf6.5457|CA3244|CaO19.12148|CaO19.4679	Protein described as an amino acid permease; hyphal downregulated; regulated upon white-opaque switching; induced in core caspofungin response, during cell wall regeneration, or by flucytosine; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	227792	227863	+	td(guc)6	227792	227863	1	227792	227863				tD(GUC)6.2	tRNA-Asp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	227920	229031	-	orf19.4678	227920	229031	1	229031	227920	229004	228003		orf19.12147|IPF22612.1|IPF19980.1|Contig4-2949_0004|orf6.5458|CA3245|CaO19.4678|IPF19980	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	229188	230003	-	orf19.4677	229188	230003	1	230003	229188	229969	229259		IPF22661.1|IPF15830.2|Contig4-2949_0003|orf6.5459|CA3246|CaO19.4677|IPF15830	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	230424	231137	-	orf19.4676	230424	231137	1	231137	230424	231137	230595		orf19.12146|IPF22636.1|IPF15832.1|Contig4-2949_0002|orf6.5460|CA3247|CaO19.12146|CaO19.4676|IPF15832	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	231124	233029	+	orf19.4675	231124	233029	1	231124	233029	231171	232955		orf19.12145|IPF22566.1|IPF15834.1|orf6.5461|CA3248|CaO19.12145|CaO19.4675|IPF15834	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	233498	234043	+	orf19.4674.1	233498	234043	1	233498	234043	233670	233900	CRD2	orf19.12144.1	Metallothionein; role in adaptation to growth with high concentration of copper ions; basal transcription is cadmium-repressed; regulated by Ssn6p; complements copper sensitivity of an S. cerevisiae cup1 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	234413	236764	-	orf19.4673	234413	236764	1	236764	234413	236764	234413	BMT9	orf19.12143|orf19.12144|IPF22601.1|IPF7421.2|Contig4-2135_0001|Contig4-2135_0002|orf6.4062|orf6.4063|CA2242|CA2241|orf19.4674|IFQ1.5f	[NOT TRANSCRIBED?] Putative beta-mannosyltransferase, member of a 9-gene family that includes characterized genes BMT1, BMT2, BMT3, and BMT4 with roles in beta-1,2-mannosylation of cell wall phosphopeptidomannan; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	240313	240615	+	orf19.4672	240313	240615	1	240313	240615	240313	240615		orf19.12142|IPF22700.1|IPF28345.1|orf6.4064|CaO19.12142|CaO19.4672	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	241333	243946	+	orf19.4670	241333	243946	1	241333	243946	241405	243870	CAS5	orf19.12140|IPF22550.1|IPF7414.1|Contig4-2599_0003|orf6.4066|CA2243|CaO19.12140|CaO19.4670|IPF7414	Putative zinc finger transcription factor; cell wall damage response; required for wild-type transcriptional response to caspofungin; mutant caspofungin hypersensitive; downregulated in core stress response; avirulent, reduced CFU in mice [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	243959	245473	-	orf19.4669	243959	245473	1	245473	243959	245382	244153	AAT22	orf19.12139|IPF18504.2|IPF7410.2|Contig4-2599_0006|orf6.4067|CA2244|CaO19.4669|CaO19.12139	Protein not essential for viability; similar to S. cerevisiae Aat2p, which is an aspartate aminotransferase involved in nitrogen metabolism; clade-associated gene expression; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	245701	245782	-	ts(uga)3	245701	245782	1	245782	245701				tS(UGA)3.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	246065	248309	-	orf19.4668	246065	248309	1	248309	246065	248280	246127		orf19.12138|IPF7409|IPF22559.1|IPF7409.2|Contig4-2599_0007|Contig4-2599_0010|orf6.4068|CA2245|CaO19.4668|CaO19.12138	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	248397	249499	-	orf19.4666	248397	249499	1	249499	248397	249238	248828		orf19.12136|IPF22655.1|IPF7405.2|Contig4-2599_0012|Contig4-2819_0014|orf6.4070|CA2246|CaO19.4666|CaO19.12136|IPF7405	Predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression, regulated by Cyr1p, Ras1p, Efg1p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	249746	250710	-	orf19.4665	249746	250710	1	250710	249746	250645	250043		orf19.12135|IPF7404.1|IPF18428.2|Contig4-2819_0013|orf6.4071|orf6.4716|CA2247|CaO19.4665|IPF7404	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	250828	251822	+	orf19.4664	250828	251822	1	250828	251822	250884	251564	NAT4	orf19.12134|IPF22668.1|IPF7403.2|Contig4-2819_0011|orf6.4072|orf6.4715|CA2710|CaO19.4664|IPF7403	Putative histone acetyltransferase, involved in regulation of white-opaque switching; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	252331	252594	-	ntar_728	252331	252594	1	252594	252331					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	252995	255236	+	orf19.4662	252995	255236	1	252995	255236	253048	254883	RLM1	orf19.12132|IPF22573.1|IPF4828.2|Contig4-2819_0007|orf6.4713|CA2709|CaO19.12132|CaO19.4662|IPF4828	Putative transcription factor; required for wild-type resistance to cell wall perturbation, caspofungin treatment; regulates caspofungin induction of PGA13 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	253235	254968	-	ntar_729	253235	254968	1	254968	253235	254023	253757			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	255454	257242	+	orf19.4660	255454	257242	2	255454|256105	255679|257242	255674	256809	RPS6A	orf19.12130|orf6.4711|IPF22630.1|IPF11001.1|RPS6B|Contig4-2819_0006|CA2708	Predicted ribosomal protein; similar to ribosomal protein S10; localizes to cell surface of yeast-form cells, but not hyphal cells; genes encoding cytoplasmic ribosomal subunits are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	257035	258394	-	orf19.4659	257035	258394	1	258394	257035	258350	257073		orf19.12129|IPF22593.1|IPF11003.2|Contig4-2819_0005|orf6.4710|CA2707|SAP114|CaO19.12129|CaO19.4659|IPF11003	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	258694	261545	+	orf19.4658	258694	261545	1	258694	261545	258971	261361		orf19.12128|IPF11006|IPF22549.1|IPF11006.2|Contig4-2819_0003|orf6.4709|CA2706|CaO19.12128|HYZ99|CaO19.4658	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	260365	261118	-	ntar_730	260365	261118	1	261118	260365					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	261219	261473	-	ntar_731	261219	261473	1	261473	261219					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	261786	262520	-	ntar_732	261786	262520	1	262520	261786					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	263243	265732	+	orf19.4657	263243	265732	1	263243	265732	263911	265413		orf19.12127|IPF22586.1|IPF12196.2|orf6.4708|CA2705|CaO19.4657|NEM1|CaO19.12127	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	266084	268324	+	orf19.4656	266084	268324	1	266084	268324	266125	268023		orf19.12126|IPF22567.1|IPF12195.2|Contig4-2565_0001|Contig4-2565_0002|orf6.4707|CA2704|CaO19.12126|CaO19.4656|IPF12195	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	267917	270892	-	orf19.4655	267917	270892	1	270892	267917	270892	268055	OPT6	orf19.12125|IPF22541.1|IPF12193.2|Contig4-2565_0003|orf6.4706|CA2703|OPT26|CaO19.12125|CaO19.4655|IPF12193	Putative oligopeptide transporter; fungal-specific (no human or murine homolog); expression of OPT6, OPT7, or OPT8 does not suppress defect of mutant lacking Opt1p, Opt2p, and Opt3p; alleles are nonidentical [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	272024	272451	+	orf19.4654	272024	272451	1	272024	272451	272098	272427		orf19.12124|IPF22682.1|IPF12190.2|Contig4-2565_0005|orf6.4705|CaO19.4654|CaO19.12124	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	273193	273846	+	orf19.4653	273193	273846	1	273193	273846	273296	273625		orf19.12123|orf4.4704|IPF22681.1|IPF12189.1|Contig4-2565_0007|orf6.4704|CaO19.4653|CaO19.12123	Transcriptionally regulated by iron; expression greater in low iron; similar to GPI-linked cell-wall proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	274725	275036	+	orf19.4652	274725	275036	1	274725	275036	274725	275036		orf19.12122|IPF12187.2|IPF28322.1|Contig4-2565_0008|orf6.4703|orf6.77|CaO19.4652	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	275958	276751	-	ntar_733	275958	276751	1	276751	275958					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	277105	277451	+	ntar_734	277105	277451	1	277105	277451					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	278127	278871	+	orf19.4651	278127	278871	1	278127	278871	278273	278692	PGA53	orf19.12120|IPF15581.2|IPF9303.2|Contig4-2275_0007|orf6.305|orf6.3348|CA1720|CaO19.4651|IPF15581	GPI-anchored cell surface protein of unknown function; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	279638	280179	-	ntar_735	279638	280179	1	280179	279638					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	280531	281617	+	orf19.4650	280531	281617	1	280531	281617	280567	281478	ILV6	orf19.12119|IPF9306.1|IPF15583.2|Contig4-2275_0003|orf6.304|orf6.3347|CA1719|CaO19.4650	Putative regulatory subunit of acetolacetate synthase ; fungal-specific (no human or murine homolog); alkaline upregulated; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	281864	282019	+	ntar_736	281864	282019	1	281864	282019	281864	281989			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	282266	282757	+	ntar_737	282266	282757	1	282266	282757					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	282365	282635	-	ntar_738	282365	282635	1	282635	282365					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	283046	287111	+	orf19.4649	283046	287111	1	283046	287111	283245	286835		ZCF27|orf19.12118|IPF22676.1|IPF9312.1|Contig4-3006_0019|orf6.3346|CA1718|CaO19.12118|CaO19.4649|IPF9312	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	287660	288817	+	orf19.4647	287660	288817	2	287660|287925	287805|288817	287709	288817	HAP3	orf19.12116|orf6.3344|IPF22615.1|IPF9315.2|HAP32|Contig4-1826_0002|CA1717|CaO19.4647|CaO19.12116|IPF9315	Protein described as similar to CCAAT-binding transcription factor that regulates respiration; expression greater in low iron; transcription is opaque specific, alkaline upregulated, ciclopirox olamine induced [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=A scenario_last_exon=E]
Ca21chr4	287955	288922	-	ntar_739	287955	288922	1	288922	287955					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	290969	291229	-	ntar_740	290969	291229	1	291229	290969					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	291002	291790	+	orf19.4646	291002	291790	1	291002	291790	291302	291739	UEC1	IPF22672.1|IPF13603.2|Contig4-2362_0001|orf6.1489|CaO19.4646	Protein required for damage to oral epithelial cells and for normal hyphal growth and stress resistance; transcription induced on contact with vascular endothelial cells; not highly conserved [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	291830	294334	+	orf19.4645	291830	294334	1	291830	294334	292116	294014	BEM1	orf19.12115|IPF18620.2|IPF13602.2|Contig4-2362_0002|orf6.1490|orf6.3343|CA0514|CaO19.4645	Protein required for wild-type budding, hyphal growth, and virulence in a mouse systemic infection; suppresses pseudohyphal and filamentous growth defects of various S. cerevisiae mutants and heat sensitivity of S. cerevisiae cdc24-4 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	294807	302087	+	orf19.4643	294807	302087	1	294807	302087	294807	301958		orf19.12113|IPF19720.2|IPF28308.1|Contig4-2362_0003|Contig4-2596_0007|Contig4-2596_0008|orf6.1491|orf6.2365|CA1061|CaO19.4643|IPF19720|IPF19720.3eoc|IPF19720.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	301983	303440	-	orf19.4642	301983	303440	1	303440	301983	303347	302091		orf19.12112|IPF22602.1|IPF14165.2|Contig4-2596_0004|orf6.2366|CA1062|CaO19.4642|CaO19.12112|IPF14165	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	303578	305091	+	orf19.4641	303578	305091	1	303578	305091	303654	305009	NMT1	orf19.12111|NMT|IPF22592.1|IPF15592.2|Contig4-2596_0003|orf6.2367|CA1063|CaO19.4641|CaO19.12111	Myristoyl-CoA:protein N-myristoyltransferase; attaches the fatty acid myristate to a small number of proteins at an N-terminal Gly; essential; antifungal drug target; functional homolog of S. cerevisiae Nmt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	305281	307258	+	orf19.4640	305281	307258	1	305281	307258	305343	307184	PWP1	orf19.12110|IPF15595.2|IPF28303.1|Contig4-2596_0001|orf6.2368|CA1064	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	307164	308101	-	orf19.4639	307164	308101	1	308101	307164	307948	307274		orf19.12108|IPF9002.2|IPF28309.1|Contig4-2825_0001|orf6.2370|CA1065|CaO19.4639|IPF9002	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	308177	309718	+	orf19.4637	308177	309718	1	308177	309718	308265	309626		orf19.12107|IPF9001.2|IPF28305.1|Contig4-2825_0004|Contig4-2825_0005|orf6.2371|CA1066|orf19.4638	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	309483	309905	-	orf19.4636	309483	309905	1	309905	309483	309905	309483			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	309965	312876	+	orf19.4635	309965	312876	1	309965	312876	310023	312647	NIP1	orf19.12105|IPF22546.1|IPF8998.2|Contig4-2825_0008|orf6.1839|orf6.2373|CA0733|CaO19.4635	Putative translation initiation factor; mutation confers hypersensitivity to roridin A and verrucarin A; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	313001	314293	+	orf19.4634	313001	314293	1	313001	314293	313048	314235		orf19.12104|IPF22600.1|IPF8996.2|Contig4-2825_0012|orf6.1840|CA0734|CaO19.4634|CaO19.12104|IPF8996	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	313938	314232	-	ntar_741	313938	314232	1	314232	313938					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	314375	315599	+	orf19.4633	314375	315599	1	314375	315599	314590	315396		orf19.12103|IPF22622.1|IPF8995.1|Contig4-2825_0014|orf6.1841|CA0735|CaO19.12103|CaO19.4633|IPF8995	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	315421	316861	-	orf19.4632	315421	316861	2	316861|316287	316677|315421	316283	315765	RPL20B	orf19.12102|IPF22642.1|IPF8994.2|Contig4-2825_0015|orf6.1842|CA0736|RPL20|CaO19.4632	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	317039	318349	-	orf19.4631	317039	318349	1	318349	317039	318197	317232	ERG251	orf19.12101|IPF8993.1|IPF18887.2|Contig4-2825_0017|orf6.1843|orf6.2054|CA0875|ERG252|CaO19.4631	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-induced; amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	319749	320120	+	ntar_742	319749	320120	1	319749	320120					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	320142	321618	-	orf19.4630	320142	321618	1	321618	320142	321528	320236	CPA1	orf19.12100|IPF11885.2|IPF18128.2|Contig4-2886_0008|orf6.2053|CA0874|CaO19.4630	Putative carbamoyl-phosphate synthase subunit; alkaline downregulated; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	321796	324833	-	orf19.4629	321796	324833	1	324833	321796	324742	321845		orf19.12099|IPF9241.2|IPF18129.1|Contig4-2953_0001|Contig4-2953_0002|orf6.2052|orf6.7928|CA0873|BUL1|CaO19.4629	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	324936	325614	-	ntar_1432	324936	325614	2	325614|325295	325524|324936					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	325876	327509	-	ntar_1431	325876	327509	5	327509|327210|326931|326705|326464	327444|327206|326931|326705|325876	326398	326276			 [label_first_exon=CGDmod label_last_exon=CGD orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	327655	329366	-	orf19.4628	327655	329366	1	329366	327655	329218	327722		orf19.12098|IPF22582.1|IPF10155.2|Contig4-2945_0027|orf6.7927|CA5190|CaO19.4628|CaO19.12098|IPF10155	Putative protein of unknown function; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	327807	327941	+	ntar_743	327807	327941	1	327807	327941					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	329418	332989	+	orf19.4627	329418	332989	1	329418	332989	329559	332903		orf19.12097|IPF22689.1|IPF10158.2|Contig4-2945_0025|orf6.7926|CA5189|CaO19.12097|NUP120|CaO19.4627|IPF10158	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	332840	334323	-	orf19.4626	332840	334323	1	334323	332840	334137	332956		orf19.12096|IPF22598.1|IPF10159.2|Contig4-2945_0024|orf6.7925|CA5188|TAP42|CaO19.12096|CaO19.4626	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	334378	335171	+	orf19.4625	334378	335171	1	334378	335171	334560	334952	TOA2	orf19.12095|IPF22646.1|IPF10160.1|Contig4-2945_0022|orf6.7924|CA5187|CaO19.12095|CaO19.4625	Protein abundance is decreased in the CAI-4 strain background compared to the SC5314 strain background, and abundance is not affected by reintegration of URA3 in CAI-4; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	334971	336505	-	orf19.4624	334971	336505	1	336505	334971	336398	335040	HRT2	orf19.12094|IPF22589.1|IPF10162.2|Contig4-2945_0020|Contig4-2945_0021|orf6.7923|CA5186|CaO19.12094|CaO19.4624	Protein described as having a role in Ty3 transposition; decreased expression in hyphae compared to yeast-form cells; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	337003	338783	-	orf19.4623.3	337003	338783	2	338783|337610	338616|337003	337601	337323	NHP6A	IPF22703.1|IPF10163.1|Contig4-2945_0015|CA5185	Protein described as nonhistone chromatin component; RNA abundance regulated by tyrosol and cell density; amphotericin B, caspofungin repressed; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	339164	339691	+	ntar_744	339164	339691	1	339164	339691					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	339267	339540	-	ntar_745	339267	339540	1	339540	339267					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	339665	340995	-	orf19.4623	339665	340995	1	340995	339665	340995	340567		orf19.12093|IPF22640.1|IPF11088.1|Contig4-2945_0011|orf6.7922|CaO19.12093|CaO19.4623	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	340967	342458	-	orf19.4622	340967	342458	1	342458	340967	342124	340967		orf19.12092|IPF22603.1|IPF11090.1|Contig4-2945_0009|orf6.7921|CA6310|CA5183|CaO19.12092|CaO19.4622|IPF11090.5f|IPF11090.53f|IPF11090.exon1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	342628	345201	-	orf19.4621	342628	345201	1	345201	342628	345094	342977		orf19.12091|IPF22563.1|IPF11093.2|Contig4-2945_0007|orf6.7920|CA5182|CaO19.12091|CaO19.4621|IPF11093	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	345341	345916	+	orf19.4620	345341	345916	1	345341	345916	345473	345802		orf19.12090|IPF22690.1|IPF11094.1|Contig4-2945_0006|orf6.7919|CA5181|MRS5|CaO19.4620|CaO19.12090|TIM12	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	345939	347338	-	orf19.4618	345939	347338	1	347338	345939	347099	346020	FBA1	orf19.12088|ALF|IPF22611.1|IPF11096.2|Contig4-2945_0004|orf6.7917|CA5180|CaO19.12088|CaO19.4618	Putative fructose-bisphosphate aldolase; enzyme of glycolysis; antigenic in murine or human infection; regulated on yeast-hyphal switch; induced by Efg1p, Gcn4p, Hog1p, biofilm growth, or fluconazole; phagocytosis-repressed; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	347870	348935	+	orf19.4617	347870	348935	1	347870	348935	348197	348733		orf19.12087|IPF22631.1|IPF11098.1|Contig4-1340_0001|Contig4-2945_0002|orf6.7916|CA5179|MAK3|CaO19.4617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	349109	350041	+	orf19.4616	349109	350041	1	349109	350041	349157	349936	POL30	orf19.12086|IPF22623.1|IPF20027.1|orf6.7915|CA5178|CaO19.4616	Similar to proliferating cell nuclear antigen (PCNA); RNA abundance regulated by tyrosol and cell density; transcriptionally induced by interaction with macrophages; flucytosine induced; detected by mass spec in stationary phase culture [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	349974	351100	-	orf19.4615	349974	351100	1	351100	349974	351044	350088		orf19.12085|IPF22618.1|IPF11101.2|Contig4-3081_0042|orf6.7914|CA5177|CaO19.4615|CaO19.12085|IPF11101	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	352032	355775	+	orf19.4614	352032	355775	1	352032	355775	352173	355670		orf19.12084|IPF22683.1|IPF6045.2|orf6.7913|CA5176|ATG11|CaO19.4614|CaO19.12084|IPF6045	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	356462	357425	+	orf19.4612	356462	357425	1	356462	357425	356583	357308		orf19.12082|IPF22625.1|IPF6041.2|Contig4-2931_0002|orf6.7911|CA5175|CaO19.12082|CaO19.4612|IPF6041	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	357908	358932	-	orf19.4611	357908	358932	1	358932	357908	358932	357958		orf19.12081|IPF22617.1|IPF6040.1|Contig4-2931_0004|orf6.7910|CA5174|CaO19.12081|PRS4|CaO19.4611	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	359154	361012	-	orf19.4610	359154	361012	1	361012	359154	360947	359154		orf19.12080|IPF22605.1|IPF6038.2|Contig4-2931_0006|orf6.7909|CA5172|CPS2|CaO19.4610|CaO19.12080|CPS2.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	361155	362007	-	orf19.4609	361155	362007	1	362007	361155	361972	361241		orf19.12079|IPF22624.1|IPF6037.1|Contig4-2931_0007|orf6.7908|CA5171|CaO19.12079|CaO19.4609|IPF6037	Protein abundance is affected by URA3 expression in the CAI-4 strain background; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	362465	364384	-	orf19.4608	362465	364384	2	364384|364010	364131|362465	364384	362465	PDC12	orf19.12078|IPF22693.1|IPF22581.1|IPF6034.1|IPF6036.1|Contig4-2931_0009|Contig4-2931_0010|orf6.7907|orf19.4607.2|CA5169|CA5170|PDC12.exon2	Putative pyruvate decarboxylase; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=J]
Ca21chr4	364476	366149	-	orf19.4607	364476	366149	1	366149	364476	366001	364697		orf19.12077|IPF19394.2|IPF6032.1|Contig4-2931_0011|orf6.198|orf6.7906|CA5168|CaO19.4607|IPF6032	Predicted ORF in Assemblies 19, 20 and 21; hyphal induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	366296	367807	-	orf19.4606	366296	367807	1	367807	366296	367771	366473	ERG8	orf19.12076|IPF19393.2|IPF6030.2|Contig4-2931_0012|orf6.199|orf6.7905|CA5167|CaO19.4606	Putative phosphomevalonate kinase; enzyme of the mevalonate pathway of isoprenoid biosynthesis; transcription is regulated by Nrg1p; possible drug target, not conserved in H. sapiens [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	367924	369438	+	orf19.4605	367924	369438	1	367924	369438	367992	369311	TYR1	orf19.12075|IPF22585.1|IPF6029.1|Contig4-2931_0013|Contig4-2931_0015|orf6.7904|CA5166|CaO19.12075|CaO19.4605	Putative prepephenate dehydrogenase; enzyme of tyrosine biosynthesis; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	369327	370286	-	orf19.4603	369327	370286	1	370286	369327	369996	369439	ARL1	orf19.12073|IPF22634.1|IPF6027.1|Contig4-2931_0016|orf6.7902|CA5165|CaO19.12073|CaO19.4603	Predicted ORF in Assemblies 19, 20 and 21; mutation confers dose-dependent sensitivity to Brefeldin A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	370434	371537	-	orf19.4602	370434	371537	1	371537	370434	371508	370510	MDH1-1	orf19.12072|IPF22614.1|IPF6025.2|Contig4-2931_0017|orf6.7901|CA5164|MDH1|CaO19.4602|CaO19.12072	Predicted malate dehydrogenase; macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	372251	374086	+	orf19.4601	372251	374086	1	372251	374086	372364	373881		orf19.12071|IPF22583.1|IPF6022.2|Contig4-2931_0020|Contig4-3104_0073|orf6.7900|CA5163|TFC1|CaO19.4601|CaO19.12071	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	374003	374187	-	ntar_746	374003	374187	1	374187	374003					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	374176	374892	+	orf19.4600.1	374176	374892	1	374176	374892	374323	374601		IPF17436.2|IPF982.1|Contig4-1375_0002|Contig4-3104_0072|CA5162|IPF982	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	374594	375504	-	orf19.4600	374594	375504	1	375504	374594	375425	374718		orf19.12069|IPF22627.1|IPF983.1|Contig4-3104_0071|orf6.7899|CA5161|CaO19.4600|CaO19.12069|IPF983	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	375478	375981	+	ntar_747	375478	375981	1	375478	375981					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	377656	377892	+	ntar_748	377656	377892	1	377656	377892					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	379579	381770	+	orf19.4599	379579	381770	1	379579	381770	379777	381579	PHO89	orf19.12068|IPF22575.1|IPF988.1|Contig4-3104_0064|orf6.7898|CA5160|CaO19.12068|CaO19.4599	Putative phosphate permease; expression is regulated upon white-opaque switching; alkaline upregulated by Rim101p; induced upon biofilm formation; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	381738	381873	-	ntar_749	381738	381873	1	381873	381738					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	382192	383252	+	orf19.4597	382192	383252	1	382192	383252	382277	383152		orf19.12066|IPF18131.2|IPF990.1|Contig4-3104_0063|orf6.7896|CAP2|CaO19.4597|CaO19.12066|CA5159	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	383193	384614	-	orf19.4596	383193	384614	1	384614	383193	384532	383204		orf19.12065|IPF22594.1|IPF992.1|Contig4-3104_0062|orf6.7895|CA5158|CaO19.12065|CaO19.4596|IPF992	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	384798	384997	-	ntar_750	384798	384997	1	384997	384798					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	385301	386734	+	orf19.4595	385301	386734	1	385301	386734	385399	386712		orf19.12064|IPF22596.1|IPF993.1|Contig4-3104_0061|orf6.7894|CA5157|CaO19.12064|CaO19.4595|IPF993	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	386649	387540	-	orf19.4594	386649	387540	1	387540	386649	387462	386785		orf19.12063|IPF22628.1|IPF994.1|Contig4-3104_0059|orf6.7893|CA5156|CaO19.4594|CLC1|CaO19.12063	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	387670	388284	+	orf19.4593.1	387670	388284	1	387670	388284	387911	388147		IPF22544.1|IPF995.1|CA5155|IPF995	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	388178	392395	-	orf19.4593	388178	392395	1	392395	388178	391839	388309	RGA2	orf19.12062|IPF22680.1|IPF1000.1|Contig4-3104_0056|orf6.7892|CA5154|CaO19.4593|CaO19.12062	Putative GTPase-activating protein (GAP) for Rho-type GTPase Cdc42p; involved in cell signaling pathways that control cell polarity; similar to S. cerevisiae Rga2p; induced upon low-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	394830	396636	-	orf19.4592	394830	396636	1	396636	394830	396564	394930	HSX11	orf19.12061|IPF22578.1|IPF1003.2|Contig4-3104_0052|orf6.7891|CGT1|CA5153|CaO19.12061|CaO19.4592|IPF1003	UDP-glucose:ceramide glucosyltransferase (glucosylceramide synthase [GCS], EC 2.4.1.80); enzyme of sphingolipid metabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	398001	400268	+	orf19.4591	398001	400268	1	398001	400268	398208	400106	CAT2	orf19.12060|IPF22569.1|IPF1006.1|Contig4-3104_0049|orf6.7890|CTN2|CaO19.4591|CaO19.12060|CA5152	Major carnitine acetyl transferase localized in peroxisomes and mitochondria; involved in intracellular acetyl-CoA transport; transcriptionally induced in macrophage; farnesol-upregulated in biofilm; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	405150	408485	+	orf19.4590	405150	408485	1	405150	408485	405150	408485	RFX2	orf19.12059|IPF22684.1|IPF1009.1|Contig4-3104_0040|Contig4-3104_0041|Contig4-3104_0043|orf6.7889|CA5151|CaO19.4590|CaO19.12059|IPF1009	Transcriptional repressor; regulator of filamentation, response to DNA damage, adhesion, virulence in murine mucosal, systemic infections; RFX domain; regulated by Nrg1p, UV-induced; partially complements S. cerevisiae rfx1 mutant defects [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr4	408206	408762	-	ntar_751	408206	408762	1	408762	408206	408439	408305			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	408902	410495	+	orf19.4589	408902	410495	1	408902	410495	409049	410482		orf19.12058|IPF22588.1|IPF1011.1|Contig4-3104_0039|orf6.7888|CA5150|CaO19.12058|FMS1|CaO19.4589	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	410601	411776	+	orf19.4587	410601	411776	1	410601	411776	410614	411702	HGH1	orf19.12056|IPF22606.1|IPF1013.1|Contig4-3104_0038|orf6.7886|CA5149|CaO19.12056|CaO19.4587	Transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	411603	413765	-	orf19.4585	411603	413765	1	413765	411603	413643	411817	TFG1	orf19.12054|IPF22571.1|IPF1015.1|Contig4-3104_0035|Contig4-3104_0037|orf6.7884|CA5148|CaO19.12054|CaO19.4585	Protein similar to S. cerevisiae Tfg1p, which is part of transcription factor TFIIF; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	413737	415945	+	orf19.4584	413737	415945	1	413737	415945	414515	415885	PHO114	orf19.12053|IPF22591.1|IPF1016.1|PHO12|Contig4-3104_0034|orf6.7883|CA5147|CaO19.4584|CaO19.12053	Acid phosphatase, transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	416124	417232	+	orf19.4583	416124	417232	1	416124	417232	416212	417141		orf19.12052|IPF22608.1|IPF1017.1|Contig4-3104_0033|orf6.7882|CA5146|CaO19.12052|YMC3|CaO19.4583|YMC2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	417030	418019	-	orf19.4582	417030	418019	1	418019	417030	417943	417221		orf19.12051|IPF22629.1|IPF1018.1|Contig4-3104_0032|orf6.7881|CA5145|SKI6|CaO19.4582|CaO19.12051	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	418090	419416	-	orf19.4581	418090	419416	1	419416	418090	419330	418134		orf19.12050|IPF22599.1|IPF1019.1|Contig4-3104_0030|orf6.7880|CA5144|CaO19.4581|CaO19.12050|IPF1019	Predicted ORF in Assemblies 19, 20 and 21; regulated by Tsa1p, Tsa1Bp under H2O2 stress conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	419431	420274	+	orf19.4580	419431	420274	1	419431	420274	419541	420074		orf19.12049|IPF22635.1|IPF1020.1|Contig4-3104_0027|orf6.7879|CA5143|CaO19.12049|CaO19.4580|IPF1020	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	420922	422257	+	orf19.4579	420922	422257	1	420922	422257	421118	422044		orf19.12048|IPF22619.1|IPF1022.1|Contig4-3104_0026|orf6.7878|CA5142|CaO19.12048|CaO19.4579|IPF1022	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	422333	423255	+	orf19.4578	422333	423255	1	422333	423255	422377	423132	CYT2	orf19.12047|orf6.7877|IPF22621.1|IPF1023.2|Contig4-3104_0025|CA5141|CaO19.12047|CaO19.4578	Protein described as cytochrome c1 heme lyase; transcription is regulated by Nrg1p; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	423089	423579	-	orf19.4577.3	423089	423579	1	423579	423089	423542	423267		IPF22647.1|IPF1024.1|Contig4-3104_0024|CA5140|TIM10	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	423744	427083	-	orf19.4577	423744	427083	1	427083	423744	427083	423772		orf19.12046|IPF22688.1|IPF1027.1|Contig4-3104_0020|Contig4-3104_0022|orf6.7876|CA5139|CaO19.12046|CaO19.4577|IPF1027	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	427289	430040	-	orf19.4575	427289	430040	3	430040|427909|427708	428060|427774|427289	429978	427664		orf19.12044|IPF22565.1|IPF1031.1|Contig4-3104_0016|orf6.7874|CA5138|CaO19.4575|CaO19.12044|IPF1031	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	430058	431908	-	orf19.4574	430058	431908	1	431908	430058	431876	430206		orf19.12043|IPF18767.2|IPF1032.2|Contig4-3104_0015|orf6.2402|orf6.7873|CA5137|CaO19.4574|CaO19.12043|IPF1032	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	432146	434656	-	orf19.4573	432146	434656	1	434656	432146	434656	432164		ZCF26|orf19.12042|IPF1034.2|IPF18133.2|Contig4-3104_0014|orf6.2403|orf6.7872|CA1083|CaO19.4573|IPF1034	Putative transcription factor with zinc cluster DNA-binding motif; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	432193	432319	+	ntar_752	432193	432319	1	432193	432319					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	435219	436868	-	orf19.4571	435219	436868	1	436868	435219	436868	435219		orf19.12040|IPF22577.1|IPF1036.2|Contig4-3104_0013|orf6.2405|CA1084|CaO19.4571|CaO19.12040|IPF1036	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	437184	437835	-	orf19.4570	437184	437835	1	437835	437184	437692	437252		orf19.12039|IPF22643.1|IPF1038.2|Contig4-3104_0012|orf6.2406|CA1085|CaO19.12039|CaO19.4570|IPF1038	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	437980	438774	+	orf19.4569	437980	438774	1	437980	438774	437980	438774		orf19.12038|IPF1039.2|IPF28306.1|Contig4-3104_0011|orf6.2407|CA1086|CaO19.4569|CaO19.12038|IPF1039	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	438721	441248	-	orf19.4568	438721	441248	1	441248	438721	441248	438831	ZCF25	orf19.12037|IPF22554.1|IPF1040.3|Contig4-3104_0010|orf6.2408|orf6.3100|CA1544|CaO19.4568|IPF1040|IPF1040.2	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	442108	443019	-	orf19.4567	442108	443019	1	443019	442108	443019	442108		orf19.12036|IPF22616.1|IPF1043.2|Contig4-3104_0008|orf6.3099|CA1543|CaO19.4567|HQD2|CaO19.12036|IPF1043	Catechol 1,2-dioxygenase (1,2-CTD), involved in degradation of aromatic compounds [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	443782	444363	-	orf19.4566	443782	444363	1	444363	443782	444363	443782		orf19.12035|orf6.3098|IPF22632.1|IPF1044.1|Contig4-3104_0007|CA1542|CaO19.4566|CaO19.12035|ROT11	[NOT TRANSCRIBED?] Protein similar to S. cerevisiae Rot1p, which has roles in cytoskeletal dynamics and cell wall biosynthesis; predicted Kex2p substrate [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	444518	445801	-	orf19.4565	444518	445801	1	445801	444518	445653	444727	BGL2	orf19.12034|orf6.3097|BGL21|IPF22613.1|IPF1046.1|Contig4-3104_0006|CA1541|CaO19.4565|CaO19.12034	1,3-beta-Glucosyltransferase, cell wall enzyme; one of multiple 1,3-beta-glucosyltransferases; mutant has cell-wall and growth defects, but wild-type 1,3- or 1,6-beta-glucan content; antigenic; virulence role in mouse systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	446310	447530	-	orf19.4563	446310	447530	1	447530	446310	447495	446380		orf19.12032|IPF22609.1|IPF1047.1|Contig4-3104_0004|orf6.3095|CA1540|CaO19.12032|CaO19.4563|IPF1047	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	447674	449473	-	orf19.4560	447674	449473	1	449473	447674	449240	447852	BFR1	orf19.12029|IPF22590.1|IPF1051.1|Contig4-3104_0002|orf6.3092|CA1539|CaO19.12029|CaO19.4560	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	449775	451140	+	orf19.2775	449775	451140	1	449775	451140	450184	451038	IDI1	orf19.12027|orf19.10291|IPF24623.1|IPF11947.2|IPF22675.1|IPF1053.1|Contig4-2553_0008|orf6.3090|orf6.6577|CA4116|orf19.4558|CaO19.10291|CaO19.2775|CA1538|IDI1.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	450787	451084	-	ntar_753	450787	451084	1	451084	450787					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	451463	452841	+	orf19.2774	451463	452841	1	451463	452841	451524	452684	LAB5	orf19.10290|IPF24616.1|IPF11949.2|Contig4-2553_0006|orf6.6578|CA4117|LIS1|CaO19.10290|CaO19.2774	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	452759	452993	-	ntar_754	452759	452993	1	452993	452759					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	453353	455779	+	orf19.2772	453353	455779	1	453353	455779	453560	455701	HOS3	orf19.10288|IPF24590.1|IPF11952.2|Contig4-2553_0004|orf6.6580|CA4118|CaO19.10288|CaO19.2772|IPF11952	Histone deacetylase; similar to S. cerevisiae Hos3p; greater expression and longer mRNA in white cells, compared to opaque cells; has conserved deacetylation motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	457049	460753	+	orf19.2771	457049	460753	1	457049	460753	457313	460738	BEM3	orf19.10287|IPF24667.1|IPF7085.2|orf6.6581|CA4119|CaO19.2771|CaO19.10287	Putative GTPase-activating protein (GAP) for Rho-type GTPase Cdc42p; involved in cell signaling pathways that control cell polarity; similar to S. cerevisiae Bem3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	460800	462454	-	orf19.2770.1	460800	462454	2	462454|461483	461729|460800	461741	461032	SOD1	orf19.10286.2|IPF24645.1|IPF7082.2|CA4120|SOD1.3	Cytosolic copper- and zinc-containing superoxide dismutase, involved in protection from oxidative stress and required for full virulence; alkaline upregulated by Rim101p; upregulated in the presence of human blood [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	462478	463389	-	orf19.2770	462478	463389	1	463389	462478	463139	462681		orf19.10286|IPF24642.1|IPF7081.2|Contig4-2112_0004|orf6.6582|CA4121|CaO19.2770|CaO19.10286|IPF7081	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	463428	464211	+	orf19.2769	463428	464211	1	463428	464211	463682	464065		orf19.10285|IPF24643.1|IPF7079.2|Contig4-2112_0005|Contig4-2513_0011|orf6.6583|CA4122|CaO19.10285|CaO19.2769|PBI2	Predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	464911	468512	+	orf19.2768	464911	468512	1	464911	468512	464968	468435	AMS1	orf19.10284|IPF24664.1|IPF7076.2|Contig4-2513_0006|orf6.6584|CA4123|CaO19.2768|CaO19.10284	Putative alpha-mannosidase; transcription is regulated by Nrg1p; induced during cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	465131	466242	-	ntar_755	465131	466242	1	466242	465131					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	466692	466868	-	ntar_756	466692	466868	1	466868	466692	466849	466721			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	467192	467367	-	ntar_757	467192	467367	1	467367	467192					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	470797	471516	-	orf19.2767	470797	471516	1	471516	470797	471464	471123	PGA59	orf19.10283|IPF24649.1|IPF20008.1|Contig4-2513_0002|orf6.6585|CA4124|CaO19.10283|CaO19.2767|IPF20008	Putative GPI-anchored protein of unknown function; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	474974	476031	+	ntar_758	474974	476031	1	474974	476031	475154	475282			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	477368	477591	-	ntar_759	477368	477591	1	477591	477368					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	479521	479829	+	orf19.2766	479521	479829	1	479521	479829	479521	479829		orf19.10282|IPF24672.1|IPF29029.1|Contig4-2938_0017|orf6.6586|CaO19.2766|CaO19.10282	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	480558	481661	+	orf19.2765	480558	481661	1	480558	481661	480635	481276	PGA62	orf19.10281|FLO1|orf6.6587|IPF20161.1|IPF29011.1|Contig4-2938_0018|Contig4-2938_0019|CA4125|CaO19.2765|CaO19.10281|IPF20161	Putative GPI-anchored protein; fluconazole-induced; transcriptionally regulated by iron; expression greater in high iron; induced during cell wall regeneration; Cyr1p or Ras1p downregulated; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	482097	482549	+	ntar_760	482097	482549	1	482097	482549	482166	482315			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	482817	485664	-	orf19.2763	482817	485664	1	485664	482817	485641	483227		orf19.10279|IPF6631|IPF24580.1|IPF6631.1|Contig4-2938_0022|orf6.6589|CA4126|CaO19.10279|CaO19.2763	Protein not essential for viability; orf19.10279 possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	486005	486874	-	orf19.2762	486005	486874	1	486874	486005	486718	486188	AHP1	orf19.10278|orf6.6590|IPF24637.1|IPF6629.2|IPF6629|Contig4-2938_0023|CA4127|AHP11|CaO19.2762|CaO19.10278	Putative alkyl hydroperoxide reductase; immunogenic in mouse; biofilm-induced; fluconazole-induced; amphotericin B, caspofungin, alkaline downregulated; induced in core stress response; regulated by Ssk1p, Nrg1p, Tup1p, Ssn6p, Hog1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	487459	488663	-	orf19.2761	487459	488663	1	488663	487459	488449	487652		orf19.10277|IPF24625.1|IPF11995.2|Contig4-2938_0025|orf6.1334|orf6.6591|CA0427|CaO19.2761|GPI11|IPF11995	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	487485	487911	+	ntar_761	487485	487911	1	487485	487911					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	488928	493544	+	orf19.2760	488928	493544	1	488928	493544	489039	493301		orf19.10276|IPF24586.1|IPF11996.2|Contig4-3083_0006|orf6.1333|orf6.6592|orf6.6593|CA0426|CFT1|CaO19.2760	Putative protein of unknown function; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	493470	495452	-	orf19.2758	493470	495452	1	495452	493470	495160	493613	PGA38	orf19.10273|orf19.10272|IPF11998.3|IPF17815.2|orf6.1331|orf6.3591|orf6.1332|orf6.3590|CA1898|orf19.2759|IPF11998|IPF11998.2	Putative GPI-anchored protein of unknown function; repressed during cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	495902	497388	+	orf19.2757	495902	497388	1	495902	497388	496267	497265		orf19.10271|IPF12002.2|IPF29008.1|Contig4-1891_0003|orf6.3589|CA1897|CaO19.2757|CaO19.10271|IPF12002	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	497475	498432	+	orf19.2756	497475	498432	1	497475	498432	497593	498231		orf19.10270|IPF24630.1|IPF12003.1|Contig4-1891_0004|orf6.3588|CA1896|ERD2|CaO19.2756|CaO19.10270	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	498174	499353	-	orf19.2755	498174	499353	1	499353	498174	499171	498434		orf19.10269|IPF24655.1|IPF24662.1|IPF10202.2|IPF12004.2|Contig4-1891_0005|orf6.3587|CA1894|PRE7.5f|PRE7.exon1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	499454	500291	-	orf19.2754	499454	500291	1	500291	499454	500130	499801		orf19.10268|IPF24668.1|IPF10200.2|Contig4-2786_0003|orf6.3586|CA1893|CaO19.10268|TIM13|CaO19.2754	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	501224	504485	+	orf19.2753	501224	504485	1	501224	504485	501568	504402		ZCF15|orf19.10267|IPF24570.1|IPF10197.2|Contig4-2786_0005|orf6.3585|CA1892|CaO19.2753|CaO19.10267|IPF10197	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	504438	508889	-	orf19.2752	504438	508889	1	508889	504438	508877	504621	ADR1	orf19.10266|IPF24651.1|IPF10196.2|Contig4-2786_0008|orf6.3584|CA1891|CaO19.2752|CaO19.10266|IPF10196	Putative transcription factor with zinc finger DNA-binding motif; similar to S. cerevisiae Adr1p but mutant phenotype suggests that it has a different set of target genes; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	512237	514217	+	orf19.2751	512237	514217	1	512237	514217	512530	514077		orf19.10265|IPF16120.2|IPF13270.2|Contig4-2217_0002|Contig4-2217_0011|orf6.2533|orf6.3583|YOL119C|CA1169|CaO19.2751|Mch4p|IPF16120.3eoc|IPF13270.1	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS); alkaline upregulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	513467	515886	-	orf19.2749	513467	515886	1	515886	513467	515620	514148		orf19.10263|IPF24610.1|IPF13268.1|Contig4-2217_0003|orf6.2535|CA1170|CaO19.10263|CaO19.2749|IPF13268	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	517298	520482	+	orf19.2748	517298	520482	1	517298	520482	517410	520334		ARG83|orf19.10262|IPF24568.1|IPF13264.2|Contig4-2217_0009|Contig4-2945_0026|orf6.2536|CA1171|CaO19.10262|CaO19.2748|IPF13264	Predicted zinc-finger protein of unknown function; clade-associated gene expression; similarity to S. cerevisiae Arg81p, which is a transcription factor involved in the regulation of arginine-responsive genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	520353	521195	-	ntar_762	520353	521195	1	521195	520353	521128	521006			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	521435	521941	+	ntar_763	521435	521941	1	521435	521941					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	521651	521948	-	ntar_764	521651	521948	1	521948	521651					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	522095	522278	-	ntar_765	522095	522278	1	522278	522095					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	523118	523480	-	ntar_766	523118	523480	1	523480	523118	523372	523202			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	523964	527185	+	orf19.2747	523964	527185	1	523964	527185	523970	527059	RGT1	orf19.10261|IPF24678.1|IPF14445.2|orf6.2537|CA1172|CaO19.2747|CaO19.10261	Transcriptional repressor involved in the regulation of glucose transporter genes; has zinc-cluster; similar to S. cerevisiae Rgt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	527249	529488	-	orf19.2746	527249	529488	1	529488	527249	529387	527495		orf19.10260|IPF14444.3|IPF28996.1|Contig4-3001_0019|orf6.4702|CA2702|EMP70|CaO19.2746|IPF14444.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	529990	531366	-	orf19.2745	529990	531366	1	531366	529990	531366	529990		UME7|orf19.10259|IPF15893.2|IPF15350.2|Contig4-1974_0005|orf6.4701|orf6.887|CA0215|CaO19.2745|IPF15350	[NOT TRANSCRIBED?] Putative transcription factor with zinc cluster DNA-binding motif; similar to S. cerevisiae Ume6p, which is a transcription factor involved in the regulation of meiotic genes [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	530471	530830	+	ntar_767	530471	530830	1	530471	530830					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	531666	533641	-	orf19.2743	531666	533641	1	533641	531666	533641	531821		orf19.10257|IPF19520.2|IPF15357.2|Contig4-1974_0001|Contig4-2458_0009|RPH1|CaO19.2743	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	534009	534540	+	orf19.2742	534009	534540	1	534009	534540	534009	534347		orf19.10256|IPF19112.1|orf6.884|CaO19.2742	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	534332	536746	-	orf19.2740	534332	536746	1	536746	534332	536699	534369		orf19.10255|IPF17364.2|IPF14414.3|Contig4-1912_0001|Contig4-1912_0002|Contig4-2105_0004|orf6.4696|orf6.634|orf6.4697|CA2700|CaO19.2740|IPF1441|CA2701|IPF14414.exon2|IPF15360.2|IPF14414.exon1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	536916	538749	-	orf19.2739	536916	538749	1	538749	536916	538698	536980		orf19.10253|IPF19958.1|IPF19837.1|Contig4-1912_0004|Contig4-2105_0002|Contig4-2105_0003|orf6.4695|orf6.633|CA2699|RLF2|CaO19.2739	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	538980	541881	-	orf19.2738	538980	541881	1	541881	538980	541600	539120	SUL2	orf19.10252|orf6.4694|SUL1|IPF14417.2|IPF28993.1|Contig4-2105_0001|CA2698	Protein described as a sulfate transporter; transcription is negatively regulated by Sfu1p; induced upon biofilm formation; amphotericin B induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	543715	546119	-	orf19.2737	543715	546119	1	546119	543715	546002	543774		orf19.10251|IPF24588.1|IPF9167.2|Contig4-2731_0006|orf6.4693|CA2697|CaO19.10251|CaO19.2737|IPF9167|CA1296|IPF18712|IPF18712.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	546291	546859	+	ntar_768	546291	546859	1	546291	546859					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	546733	547731	-	orf19.2736	546733	547731	1	547731	546733	547581	547141		orf19.10250|IPF24632.1|IPF9169.2|Contig4-2731_0003|orf6.4692|CA2696|CaO19.2736|BUR6|CaO19.10250|IPF9169	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	547880	549460	-	orf19.2735	547880	549460	2	549460|549195	549428|547880	549178	548009	SEN2	orf19.10249|IPF24615.1|IPF9170.2|Contig4-2731_0002|orf6.4691|CaO19.10249|CaO19.2735|CA2695|IPF9070	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B; has intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	550208	551472	+	orf19.2734	550208	551472	1	550208	551472	550364	551371		orf19.10248|IPF9171|IPF9171.1|IPF29007.1|Contig4-2731_0001|orf6.4690|CA2694|SCD99|CaO19.2734	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	551548	553259	+	orf19.2733	551548	553259	1	551548	553259	551637	553190		orf19.10246|orf19.10247|IPF9173.2|IPF29004.1|orf6.4688|orf6.4689|CA2692|CA2693|orf19.2732|IPF9173.5f	Putative protein of unknown function, transcription is activated in the presence of elevated CO2; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	552787	553566	-	orf19.2731	552787	553566	1	553566	552787	553566	553228		orf19.10245|IPF10251.3|orf6.2523|orf6.4687|orf6.4698|CaO19.2731	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	553876	555758	+	orf19.2730	553876	555758	1	553876	555758	553938	555758		orf19.10244|IPF24597.1|IPF20076.1|Contig4-2458_0008|Contig4-2458_0009|orf6.2522|orf6.4699|orf6.885|CA1163|RPH2|CaO19.2730|CaO19.10244|IPF15357	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr4	555909	557798	+	orf19.2728	555909	557798	1	555909	557798	555926	557695		orf19.10242|IPF24601.1|IPF10258.2|Contig4-2458_0004|orf6.2520|CA1162|RAD24|CaO19.2728|CaO19.10242|IPF10258	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	557629	558692	-	orf19.2727	557629	558692	1	558692	557629	558606	557845	GRX3	orf19.10241|IPF24624.1|IPF10259.2|Contig4-2458_0002|orf6.2519|CA1161|CaO19.10241|CaO19.2727	Protein described as glutaredoxin; flucytosine induced; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	558890	560294	-	orf19.2726	558890	560294	1	560294	558890	559897	558959		orf19.10240|IPF24621.1|IPF10262.2|orf6.2518|CA1160|CaO19.2726|CaO19.10240|IPF10262	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	558918	559995	+	ntar_769	558918	559995	1	558918	559995	559422	559586			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	566926	567228	-	orf19.2725	566926	567228	1	567228	566926	567228	566926		IPF29033.1|orf6.325|CaO19.2725	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	571598	573562	+	orf19.2724	571598	573562	1	571598	573562	571922	573418		orf19.10239|IPF6399.1|IPF17321.2|Contig4-1642_0002|Contig4-2420_0009|orf6.1970|orf6.2695|CA0817|CaO19.2724|IPF6339	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	574539	574974	-	ntar_770	574539	574974	1	574974	574539					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	577341	579343	+	orf19.2723	577341	579343	1	577341	579343	577406	577852	HIT1	orf19.10238|IPF19187.2|IPF6402.2|Contig4-1801_0001|orf6.2696|orf6.678|CA1271|CaO19.2723	Protein not essential for viability; similar to S. cerevisiae Hit1p, which is required for growth at high temperature [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	577995	579247	-	orf19.2722	577995	579247	1	579247	577995	579236	578214	CGR1	orf19.10237|IPF6403.2|IPF18718.1|Contig4-1801_0004|orf6.2697|orf6.677|CA1272|CaO19.2722	Possible negative regulator of yeast-form growth; induced upon growth cessation at yeast-hyphal transition or during planktonic growth; physically interacts with Msi3p, an HSP70 family member; similar to rat anti-aging gene, SMP30 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	579405	580539	-	orf19.2721	579405	580539	1	580539	579405	580529	579492		orf19.10236|IPF6404.2|IPF29006.1|Contig4-1801_0005|Contig4-2673_0012|orf6.2698|orf6.676|CA0150|CaO19.2721|CDC123	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	580731	582510	+	orf19.2720	580731	582510	1	580731	582510	580782	582416		orf19.10235|IPF19188.2|IPF6406.2|Contig4-2673_0010|orf6.2699|orf6.675|CA1273|CCT4|CaO19.2720	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	582340	584254	-	orf19.2717	582340	584254	1	584254	582340	584201	582507	SAS10	orf19.10232|IPF24603.1|IPF6410.2|Contig4-2673_0009|orf6.2702|CA1274|CaO19.2717	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC); repressed upon high-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	584388	585884	+	orf19.2715	584388	585884	1	584388	585884	584483	585841	RPC53	orf19.10230|IPF24613.1|IPF19910.1|Contig4-2673_0008|orf6.2704|CA1275|CaO19.2715	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	586425	588897	+	orf19.2713	586425	588897	2	586425|586915	586850|588897	586425	588897		orf19.10228|orf19.10229|IPF6415.2|IPF19655.2|Contig4-2673_0005|Contig4-2673_0006|orf6.2706|orf6.2729|orf6.2705|orf6.2730|CA1276|orf19.2714|MSH5|CA1294|MSH5.3f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	588809	591281	-	orf19.2712	588809	591281	1	591281	588809	591191	588894	HCA4	orf19.10227|IPF24582.1|IPF6418.1|Contig4-2673_0001|orf6.2728|CaO19.2712|CaO19.10227|CA1293	Putative role in regulation of biogenesis of the cell wall; upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	591356	592340	-	orf19.2711.1	591356	592340	2	592340|592187	592266|591356	592276	591485		IPF24628.1|IPF6419.2|Contig4-2190_0001|CA1292|SRB2.3f|SRB2.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	592464	594972	+	orf19.2711	592464	594972	1	592464	594972	592522	594915		orf19.10226|IPF24584.1|IPF16752.2|Contig4-2190_0002|orf6.2727|CA1291|CaO19.10226|ELP2|CaO19.2711|IPF16752	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	595181	596146	+	orf19.2710	595181	596146	1	595181	596146	595271	595915		orf19.10225|IPF24631.1|IPF16212.2|Contig4-1957_0003|Contig4-2190_0003|orf6.2726|CA1290|CaO19.10225|GLC8|CaO19.2710|IPF16212	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	595868	597406	-	orf19.2709	595868	597406	1	597406	595868	597368	596085	ZUO1	orf19.10224|IPF16213.3|IPF29003.1|Contig4-1957_0002|orf6.2725|CA1289|CaO19.2709|IPF16213.2	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Zuo1p, which is a cytosolic ribosome-associated chaperone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	597461	598402	-	orf19.2708	597461	598402	1	598402	597461	598349	597582		orf19.10223|IPF24626.1|IPF14356.2|Contig4-1779_0002|orf6.1233|CA0377|CaO19.2708|IPF14356	Predicted ORF in Assemblies 19, 20 and 21; nonessential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	598567	599013	-	orf19.2707.1	598567	599013	1	599013	598567	598959	598762	QCR9	IPF24583.1|IPF14357.1|Contig4-1779_0001|CA0376	ORF Predicted by Annotation Working Group; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	599218	600867	-	orf19.2706	599218	600867	1	600867	599218	600732	599371	CRH11	orf19.10221|orf6.1231|IPF24611.1|IPF14360.2|Contig4-1894_0003|CA0375|CRH1|CaO19.2706|CaO19.10221	GPI-anchored cell wall protein, putative ortholog of S. cerevisiae Crh1p; predicted glycosyl hydrolase domain; similar to Csf4p and to antigenic A. fumigatus Aspf9; predicted Kex2p substrate; caspofungin-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	599377	600660	+	ntar_771	599377	600660	1	599377	600660	599669	599977			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	602846	603166	+	orf19.2704	602846	603166	1	602846	603166	602846	603166		orf19.10219|IPF24674.1|IPF29030.1|orf6.5492|CaO19.10219|CaO19.2704	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	603191	604978	+	orf19.2703	603191	604978	1	603191	604978	603321	604889		orf19.10218|orf6.5491|IPF24607.1|IPF5045.1|Contig4-2809_0011|CA3266|CaO19.10218|CaO19.2703|IPF5045	Transcriptionally regulated by iron; expression greater in low iron; increased expression observed in an ssr1 homozygous null mutant; similar to S. cerevisiae Ymr171cp; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	604215	605286	-	ntar_772	604215	605286	1	605286	604215					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	605491	606256	+	orf19.2701	605491	606256	1	605491	606256	605540	606058		orf19.10216|IPF24639.1|IPF5043.1|Contig4-2809_0006|orf6.5489|CA6206|CaO19.10216|CaO19.2701|IPF5043	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	606557	608670	+	orf19.2699	606557	608670	1	606557	608670	606596	608542	ABP1	orf19.10214|IPF24596.1|IPF5041.1|Contig4-2809_0004|orf6.5487|CA3265|CaO19.10214|CaO19.2699	Protein similar to S. cerevisiae Abp1p, which is an actin-binding protein of the cortical actin cytoskeleton; caspofungin induced; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	608509	609246	-	orf19.2698	608509	609246	1	609246	608509	609084	608758		orf19.10213|IPF24663.1|IPF5035.1|Contig4-2809_0003|orf6.5486|CA3264|CaO19.2698|CaO19.10213|IPF5035	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	609473	615271	+	orf19.2697	609473	615271	1	609473	615271	609473	615169		orf19.10212|IPF24635.1|IPF19781.1|Contig4-2782_0001|Contig4-2809_0001|orf6.5485|CA3263|UBR2|CaO19.10212|CaO19.2697|UBR12	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	615118	620766	-	orf19.2695	615118	620766	1	620766	615118	620665	615302	UBR1	orf19.10210|IPF24638.1|IPF5026.2|Contig4-2782_0002|orf6.5483|CA3262|CaO19.10210|CaO19.2695|UBR11.3f|UBR11.3	Protein similar to S. cerevisiae Ubr1p ubiquitin-protein ligase; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	621459	622895	+	orf19.2694	621459	622895	1	621459	622895	621567	622796	TYS1	orf19.10209|IPF24614.1|IPF5023.2|Contig4-2782_0005|Contig4-2865_0013|orf6.5482|CA3261|CaO19.2694|CaO19.10209	Putative tRNA-Tyr synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	622789	623768	-	orf19.2693	622789	623768	1	623768	622789	623611	622934	GST2	orf19.10208|YNL229C|Contig4-2782_0006|IPF24629.1|IPF7968.2|IPF7968|Contig4-2865_0012|orf6.5481|CA3260|CaO19.10208|CaO19.2693	Increased transcription is observed upon benomyl treatment transcription and in populations of cells exposed to fluconazole over multiple generations; regulated by Nrg1p, Tup1p; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	624374	625131	-	orf19.2691	624374	625131	1	625131	624374	625096	624374		orf19.10206|IPF7970.1|IPF17602.2|Contig4-2865_0010|orf6.4801|orf6.5479|CA3259|CaO19.2691|IPF7970	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr4	627499	627570	+	tt(ugu)1	627499	627570	1	627499	627570				tT(UGU)1.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	627733	630718	+	orf19.2690	627733	630718	1	627733	630718	627864	630557		orf19.10205|IPF24572.1|IPF7974.1|Contig4-2865_0004|orf6.4800|CA2773|MGM1|CaO19.2690|CaO19.10205	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	630599	633263	-	orf19.2688	630599	633263	1	633263	630599	633200	630681	NAN1	orf19.10203|IPF24577.1|IPF20112.1|Contig4-2865_0003|orf6.4798|CA2772|CaO19.10203|CaO19.2688|IPF20112	Predicted ORF in Assemblies 19, 20 and 21; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	633405	633989	+	orf19.2687.1	633405	633989	1	633405	633989	633514	633732		IPF24589.1|IPF7977.1|Contig4-2865_0002|CA2771|RPB10	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	633900	635997	-	orf19.2686	633900	635997	1	635997	633900	635720	633978		orf19.10201|IPF19440.2|IPF7980.2|Contig4-2865_0001|orf6.116|orf6.4796|CA2770|CPS1|CaO19.2686	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	636171	636392	+	ntar_773	636171	636392	1	636171	636392					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	636424	636588	-	ntar_774	636424	636588	1	636588	636424					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	637631	638129	-	ntar_775	637631	638129	1	638129	637631					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	639638	641385	+	orf19.2685	639638	641385	1	639638	641385	639770	640798	PGA54	orf19.10200|IPF24619.1|IPF15870.2|Contig4-2214_0002|orf6.4795|CA2769|CaO19.2685|CaO19.10200|IPF15870	Putative GPI-anchored protein; hyphal induced; Hog1p-downregulated; induced in a cyr1 or efg1 homozygous null mutant; shows colony morphology-related gene regulation by Ssn6p; upregulated in an RHE model; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	641752	644341	+	orf19.2684	641752	644341	1	641752	644341	641845	644280		orf19.10199|IPF24581.1|IPF17011.2|orf6.4794|CA2768|CaO19.10199|SLK19|CaO19.2684|IPF17011	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	644700	645891	+	orf19.2682	644700	645891	1	644700	645891	644984	645811		orf19.10197|IPF19155.2|IPF14884.2|Contig4-2016_0002|orf6.4792|orf6.742|CA2767|TOA1|CaO19.2682	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	646919	647896	+	orf19.2681	646919	647896	1	646919	647896	646919	647896	RBT7	orf19.10196|IPF14885.2|IPF29009.1|Contig4-2806_0001|orf6.4791|orf6.741|CA0169|CaO19.2681	Protein with similarity to RNase T2 enzymes, has putative secretion signal; expression is Tup1p-repressed [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	648504	648869	-	ntar_776	648504	648869	1	648869	648504	648671	648510			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	649004	654656	+	orf19.2680	649004	654656	1	649004	654656	649268	654511		orf19.10195|IPF24640.1|IPF6900.3|Contig4-2806_0003|Contig4-2806_0005|orf6.5554|orf6.740|CA3319|CaO19.2680|DRS25|DRS25.3eoc|IPF6900.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	654524	657384	-	orf19.2678	654524	657384	1	657384	654524	657311	654609	BUB1	orf19.10193|IPF24575.1|IPF6898.2|Contig4-2806_0006|Contig4-2806_0007|orf6.5556|CA3320|CaO19.2678|CaO19.10193|IPF6898	Predicted ORF in Assemblies 19, 20 and 21; mutation confers increased sensitivity to nocodazole [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	657565	659915	+	orf19.2677	657565	659915	1	657565	659915	657654	659519		orf19.10192|IPF24578.1|IPF24606.1|IPF6895.2|IPF6896.2|Contig4-2806_0009|orf6.5557|CA3321|IPF6896.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	659440	660558	-	orf19.2676	659440	660558	1	660558	659440	660489	659593		orf19.10191|IPF24620.1|IPF6894.2|Contig4-2806_0011|orf6.5558|CA3323|CaO19.2676|IKI1|CaO19.10191	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	660680	664081	+	orf19.2675	660680	664081	1	660680	664081	660680	663964		orf19.10190|IPF24671.1|IPF6893.2|orf6.5559|CA3324|HSH155|CaO19.10190|CaO19.2675|IPF6893	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	664111	665186	-	orf19.2674	664111	665186	1	665186	664111	665139	664111		orf19.10189|IPF24618.1|IPF6890.2|orf6.5560|CA3325|CaO19.2674|CaO19.10189|IPF6890	Putative transcription factor with zinc finger DNA-binding motif; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr4	665650	667152	+	orf19.2673	665650	667152	1	665650	667152	665708	666727		orf19.10188|IPF24617.1|IPF6889.2|Contig4-1603_0002|orf6.5561|CA3326|CaO19.10188|CaO19.2673|IPF6889	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	668175	670620	+	orf19.2672	668175	670620	1	668175	670620	668328	670370	NCP1	orf19.10187|PRD1|RED|IPF24595.1|IPF10561.2|Contig4-2240_0006|orf6.5562|CA3327|CaO19.10187|CaO19.2672	NADPH-cytochrome P450 reductase, acts with Erg11p in sterol 14 alpha-demethylation in ergosterol biosynthesis; subject to hypoxic regulation; ketoconazole-induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	670680	671017	-	ntar_777	670680	671017	1	671017	670680					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	671223	672727	+	orf19.2671	671223	672727	1	671223	672727	671384	672727		orf19.10186|orf6.154|IPF24612.1|IPF10564.2|Contig4-2584_0001|orf6.5563|CA3328|CaO19.2671|CaO19.10186|IPF10564	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr4	672766	673911	-	orf19.2670	672766	673911	1	673911	672766	673769	672894		orf19.10185|IPF12430.2|IPF12162.1|Contig4-2584_0002|orf6.1626|orf6.5564|CA3329|CaO19.10185|CaO19.2670|IPF12162	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	674364	678707	-	orf19.2669	674364	678707	1	678707	674364	678707	674364		IPF12161.2|Contig4-2757_0014|Contig4-3083_0024|orf6.5565|CA3330|CaO19.2669|POL21.3f|POL21.3	Predicted ORF in retrotransposon Tca4 with similarity to the Pol region of retrotransposons encoding reverse transcriptase, protease and integrase; downstream from RHD2 with similarity to the Gag region encoding nucleocapsid-like protein [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	679360	680277	-	orf19.2668	679360	680277	1	680277	679360	680277	679360	RHD2	IPF12158.1|IPF12159.2|Contig4-3083_0025|Contig4-3083_0027|orf6.5566|CA3332|POL21.5f|GAG	Predicted ORF in retrotransposon Tca4 with similarity to the Gag region encoding nucleocapsid-like protein; overlaps blocked reading frame orf19.2668.1; decreased expression in hyphae compared to yeast-form cells [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	680863	681944	+	orf19.2667	680863	681944	1	680863	681944	680960	681850	RPF1	orf19.10184|IPF12428.1|IPF12157.3|Contig4-3083_0028|orf6.1627|orf6.5567|CA0599|CaO19.2667|IPF12428	Predicted ORF in Assemblies 19, 20 and 21; essential for growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	682344	686469	+	orf19.2665	682344	686469	1	682344	686469	682600	686337	MSN5	orf19.10182|orf19.10183|IPF18929.1|IPF24579.1|IPF29005.1|IPF12426.2|Contig4-3083_0029|orf6.1628|orf6.1629|CA0601|CA0600|orf19.2666|MSN5.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	686644	689599	+	orf19.2664	686644	689599	1	686644	689599	686742	689441		orf19.10181|IPF24573.1|IPF16761.2|Contig4-2457_0002|orf6.1472|CA0502|orf19.67|MKT1|CaO19.10181|CaO19.2664|IPF16761	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	689530	690845	-	orf19.1440.2	689530	690845	1	690845	689530	690462	690280			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	692395	692595	-	orf19.1440.1	692395	692595	1	692595	692395	692595	692395			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	693529	694393	-	ntar_778	693529	694393	1	694393	693529	694393	694160			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	695268	696247	-	ntar_779	695268	696247	1	696247	695268	695877	695668			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	697401	699218	+	orf19.1440	697401	699218	1	697401	699218	697817	698932		orf19.9015|IPF25887.1|IPF10568.1|Contig4-2265_0003|orf6.1052|CA0279|CaO19.1440|IPF10568	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	699573	700972	+	orf19.1439	699573	700972	1	699573	700972	699814	700899	IPK1	orf19.9013|IPF25886.1|IPF10566.1|Contig4-2265_0006|orf6.1053|CA0280|CaO19.1439|IPF10566	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	701161	702384	-	orf19.1438	701161	702384	1	702384	701161	702384	701161		orf19.9012|IPF19419.2|IPF10565.1|Contig4-2265_0007|orf6.1054|orf6.155|CA0281|CPD2|CaO19.1438|IPF10565|IPF10564.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	702777	704120	-	orf19.3362	702777	704120	1	704120	702777	704120	702777		orf19.10870|IPF23891.1|IPF15758.2|Contig4-2353_0001|orf6.1783|CaO19.10870|CaO19.3362	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr4	704469	706878	-	orf19.3363	704469	706878	1	706878	704469	706651	704522	VTC4	orf19.10871|IPF16674.3|IPF15753.2|Contig4-2353_0002|orf6.1784|orf6.2574|CA0697|CaO19.3363	Protein described as polyphosphate synthetase; decreased expression in hyphae compared to yeast-form cells; fungal-specific (no human or murine homolog); virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	707090	708065	-	orf19.3364	707090	708065	1	708065	707090	707956	707468		orf19.10872|IPF10394.1|IPF16673.2|Contig4-2353_0007|Contig4-2386_0008|orf6.1785|orf6.2575|CA1196|CaO19.3364|IPF10394	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	708418	709939	-	orf19.3365	708418	709939	1	709939	708418	709745	708588	DAO2	orf19.10873|IPF10395.2|IPF18896.1|Contig4-2386_0006|orf6.1786|orf6.2576|CA0699|IFG2.5f|CA1197|IFG1	Putative D-amino acid oxidase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	710025	711252	+	orf19.3366	710025	711252	1	710025	711252	710542	711252	CSH3	orf19.10874|orf6.1787|IPF23895.1|IPF10396.2|SHR3|Contig4-2386_0003|orf6.2577|CA0700|CaO19.3366	Functional homolog of S. cerevisiae Shr3p, which is a chaperone specific for amino acid permeases; localized to ER; required for wild-type amino-acid responsive hyphal growth and for mouse systemic virulence; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	711501	712241	+	orf19.3366.1	711501	712241	2	711501|711834	711557|712241	711501	712028		IPF23888.1|IPF10397.2|CA0701|IPF10397	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	712381	713456	+	orf19.3367	712381	713456	1	712381	713456	712422	713297		orf19.10875|IPF10399.1|IPF16677.2|Contig4-2386_0001|orf6.2578|orf6.2893|CA1198|MRPL22|CaO19.3367|IPF10399	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	713377	713682	-	orf19.3368	713377	713682	1	713682	713377	713682	713377		IPF28792.1|orf6.2892|CaO19.3368	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	716802	718097	+	orf19.3369	716802	718097	1	716802	718097	717306	718097	MOH1	orf19.10876|IPF10404.2|IPF28786.1|Contig4-1807_0003|Contig4-2147_0004|orf6.2579|orf6.2891|CA1199|CaO19.3369|IPF10404	Protein similar to S. cerevisiae Moh1p; transcription is induced in response to alpha pheromone in SpiderM medium; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	718829	721363	-	orf19.3370	718829	721363	1	721363	718829	721235	718950	DOT4	orf19.10878|orf6.2580|IPF17685.3|IPF15624.1|Contig4-1346_0001|Contig4-1346_0002|Contig4-2147_0001|Contig4-2147_0003|orf6.2581|orf6.2890|CA1406|CaO19.3370|UBP10	Protein similar to ubiquitin C-terminal hydrolase; localizes to cell surface of hyphal cells, but not yeast-form cells; repressed upon high-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	721831	723948	-	orf19.3371	721831	723948	1	723948	721831	723842	722013		orf19.10879|orf19.10880|IPF23892.1|IPF15627.2|Contig4-2147_0005|orf6.140|orf6.2889|orf6.2888|CA1405|CA1404|orf19.3372|IPF19554.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	724095	725966	-	orf19.3373	724095	725966	1	725966	724095	725966	724095		orf19.10881|IPF13110.3|IPF14155.1|Contig4-2242_0002|orf6.141|orf6.2887|CA1403|RIM4|CaO19.3373|IPF14155	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	724104	724852	+	ntar_780	724104	724852	1	724104	724852	724617	724799			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	726613	727428	-	orf19.3374	726613	727428	1	727428	726613	727428	726613	ECE1	orf19.10882|IPF23894.1|IPF14152.1|Contig4-2242_0004|orf6.2886|CA1402|CaO19.10882|CaO19.3374	Protein comprising eight 34-residue repeats; hyphal-specific expression increases with extent of elongation of the cell; regulated by Rfg1p, Nrg1p, Tup1p, Cph1p, Efg1p, Hog1p, farnesol, phagocytosis; may contribute to biofilm formation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	730626	731213	-	orf19.3375	730626	731213	1	731213	730626	731213	730626			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	733260	733784	-	orf19.3376	733260	733784	1	733784	733260	733784	733260		orf19.10885|IPF16001.1|IPF13247.1|Contig4-1821_0002|orf6.1152|orf6.2936|CA0339|CaO19.3376|IPF13247	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	734794	735523	-	orf19.3378	734794	735523	1	735523	734794	735490	734939		orf19.10886|IPF16006.2|IPF13252.1|Contig4-2366_0003|orf6.1150|orf6.2935|CA0338|CaO19.3378|IPF13252	Predicted ORF in Assemblies 19, 20 and 21; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	736770	737022	-	ntar_781	736770	737022	1	737022	736770					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	738545	741271	-	orf19.3380	738545	741271	1	741271	738545	741271	738545	HWP2	orf19.10888|PGA8|IPF23887.1|IPF14331.2|Contig4-2768_0012|Contig4-2768_0013|orf6.2933|CA1430|CaO19.3380|CaO19.10888|IPF14331	Putative GPI-anchored, glycosylated cell wall protein, required for filamentous growth on some solid media; null mutant exhibits delayed virulence; expressed in hyphae; regulated by Efg1p, Tup1p; has similarity to Hwp1p and Rbt1p domains [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	745268	747433	-	orf19.1327	745268	747433	1	747433	745268	747433	745268	RBT1	orf19.8907|orf19.10892|ECE99|IPF19252.2|IPF15385.2|IPF23893.1|IPF16136.1|Contig4-2768_0006|orf6.4889|orf6.489|orf6.2929|CA2830|orf19.3384|CaO19.1327|RBT99	Cell wall protein with similarity to Hwp1p, required for virulence; predicted to be cell-wall attached and glycosylated; Tup1p repressed; serum, hyphal and alkaline induced; farnesol, alpha factor induced; Rfg1p-, Rim101p-regulated [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	750584	752933	+	orf19.1326	750584	752933	1	750584	752933	750752	752818		orf19.8906|IPF26011.1|IPF14593.2|Contig4-2287_0002|orf6.4888|CA2829|LPF13|CaO19.8906|CaO19.1326|IFA7	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	752918	754790	-	orf19.1325	752918	754790	1	754790	752918	754755	752971	ECM38	orf19.8905|IPF26013.1|IPF17026.2|orf6.4887|CA2828|CSA99|CaO19.1325|CaO19.8905|IPF17026	Alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	755369	758385	+	orf19.1324	755369	758385	1	755369	758385	755390	758362	RAD2	orf19.8904|IPF26007.1|IPF19770.1|orf6.4886|CA2827|CaO19.1324|RAD13|CaO19.8904	Ortholog of S. cerevisiae RAD2, nucleotide excision repair nuclease; null mutant is extremely sensitive to UV irradiation; transcription is upregulated upon interaction with macrophages [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	758495	761115	+	orf19.1323	758495	761115	1	758495	761115	758543	760858		orf19.8903|IPF26010.1|IPF12906.2|Contig4-2436_0008|orf6.4885|CA2826|APL6|CaO19.1323|CaO19.8903	Phosphorylated protein of unknown function; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	762939	764843	+	orf19.1321	762939	764843	1	762939	764843	762939	764843	HWP1	orf19.8901|ECE2|IPF26012.1|IPF12916.1|Contig4-2436_0002|orf6.4883|CA2825|CaO19.8901|CaO19.1321	Hyphal cell wall protein; covalently crosslinked to epithelial cells by host transglutaminase; opaque- and a-specific, alpha-factor induced; at MTLa side of conjugation tube; assessment of virulence role complicated by URA3 effects [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	765587	767013	+	orf19.1318	765587	767013	1	765587	767013	765747	766820		orf19.8898|IPF26020.1|IPF17888.2|Contig4-1592_0002|orf6.4880|CA2824|CaO19.8898|CaO19.1318|IPF17888	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	766846	769762	-	orf19.1317	766846	769762	1	769762	766846	769486	766952	OSH3	orf19.8897|IPF26009.1|IPF14554.2|Contig4-1592_0001|orf6.4879|CA2823|CaO19.8897|CaO19.1317|IPF14554	Protein required for wild-type filamentation; has oxysterol binding protein domain and pleckstrin homology motif; overproducton suppresses cph1 homozygous null filamnetation defect; similar to S. cerevisiae Osh3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	770497	772185	-	orf19.1314	770497	772185	1	772185	770497	772087	770678		orf19.8894|IPF26016.1|IPF17153.2|orf6.4876|CA2822|CaO19.1314|CaO19.8894|IPF14550	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	772498	772584	-	tq(uug)1	772498	772584	2	772584|772532	772547|772498				tQ(UUG)1.2	tRNA-Gln predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	772891	774424	-	orf19.1313	772891	774424	1	774424	772891	774255	773035	CDR3	orf19.8892|orf19.8893|IPF26026.1|IPF14709.3|YPL088-1|Contig4-1792_0002|orf6.3101|orf6.4875|CA1545|orf19.1312|CaO19.1312|CaO19.8892|CA2821|CDR3.3eoc|IPF17152.1|CDR3.5eoc|IPF14709.2	Transporter of the Pdrp/Cdrp family of the ATP-binding cassette (ABC) superfamily; transports phospholipids in an out-to-in direction; expressed in opaque-phase cells; induced by macrophage interaction; fluconazole-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	774199	777540	-	ntar_782	774199	777540	1	777540	774199	777540	774199			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	780305	780375	-	tg(gcc)2	780305	780375	1	780375	780305				tG(GCC)2.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	780604	780840	-	ntar_783	780604	780840	1	780840	780604					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	781047	781118	-	td(guc)4	781047	781118	1	781118	781047				tD(GUC)4.2	tRNA-Asp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	781665	782025	+	ntar_1419	781665	782025	2	781665|781874	781741|782025					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	782574	782645	+	td(guc)3	782574	782645	1	782574	782645				tD(GUC)3.2	tRNA-Asp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	782729	782800	+	td(guc)2	782729	782800	1	782729	782800				tD(GUC)2.2	tRNA-Asp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	782925	785510	+	orf19.1311	782925	785510	1	782925	785510	782925	785510	SPO75	orf19.8891|IPF6671.2|IPF29492.1|Contig4-2805_0006|orf6.3102|CA1546|CaO19.8891|CaO19.1311|IPF6671	Similar to S. cerevisiae sporulation protein; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	783229	787235	-	orf19.1310	783229	787235	1	787235	783229	787132	785501		orf19.8890|IPF6672.2|IPF18706.2|orf6.2770|orf6.3103|CA1547|IPF6672|CaO19.1310	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	787446	788084	-	orf19.1309	787446	788084	1	788084	787446	787968	787555		orf19.8889|IPF6673.1|IPF6675.2|Contig4-2324_0006|orf6.2771|orf6.3104|CA1323|CaO19.1309|IPF6675	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	788639	790500	+	orf19.1308	788639	790500	1	788639	790500	788714	790459		orf19.8888|IPF18658.2|IPF6676.2|Contig4-2324_0003|orf6.2772|orf6.3105|CA1324|FNX1|CaO19.1308|IPF6676	Predicted membrane transporter, member of the drug:proton antiporter (14 spanner) (DHA2) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	790464	792113	-	orf19.1307	790464	792113	1	792113	790464	792025	790523		orf19.8887|IPF26015.1|IPF6678.2|Contig4-2324_0002|orf6.2773|CA1325|CaO19.1307|CaO19.8887|IPF6678	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	792459	793685	-	orf19.1306	792459	793685	1	793685	792459	793553	792534		orf19.8886|IPF26019.1|IPF6679.1|orf6.2774|CA1326|CaO19.8886|CaO19.1306|IPF6679	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	793939	795535	-	orf19.1305	793939	795535	1	795535	793939	795504	794101		orf19.8885|IPF26017.1|IPF6680.2|Contig4-1569_0002|Contig4-2781_0001|orf6.2775|CA1327|CaO19.1305|CaO19.8885|IPF6680	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	795584	796719	+	orf19.1304	795584	796719	1	795584	796719	795663	796577		orf19.8884|IPF6681.3|IPF6682.2|Contig4-2781_0003|orf6.2776|CA1328|RRP4|CaO19.8884|CaO19.1304	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	796666	797958	-	orf19.1303	796666	797958	1	797958	796666	797872	796688		orf19.8883|IPF19627.2|IPF19626.1|Contig4-2781_0004|Contig4-2781_0005|Contig4-2781_0008|orf6.1384|orf6.2777|CA1329|CaO19.1303|MRF1|MRF2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	798828	799478	+	orf19.1302	798828	799478	1	798828	799478	798828	799478		orf19.8882|IPF13556.2|IPF29496.1|Contig4-2781_0010|orf6.1385|orf6.2778|CA0451|CaO19.1302|IPF13556	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	800045	800835	+	orf19.1301	800045	800835	1	800045	800835	800217	800711		orf19.8881|IPF13554.1|IPF18704.2|Contig4-2781_0016|orf6.1386|CA0452|CaO19.1301|IPF13554	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	800677	802210	-	orf19.1300	800677	802210	1	802210	800677	802162	800828		orf19.8880|IPF13552.2|IPF29494.1|Contig4-2781_0017|orf6.1387|CA0453|CaO19.1300|IPF13552	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	802385	803927	+	orf19.1299	802385	803927	1	802385	803927	802437	803744	RPN6	orf19.8879|IPF13551.2|IPF29495.1|Contig4-2781_0018|orf6.1388|CA0454|CaO19.1299	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	803711	806440	-	orf19.1298	803711	806440	1	806440	803711	806316	803782		orf19.8878|IPF26014.1|IPF16027.3|Contig4-2781_0019|Contig4-2781_0020|Contig4-2781_0021|orf6.1389|orf6.923|CA0225|NUP84|CaO19.1298|IPF16027.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	807141	809647	+	orf19.1297	807141	809647	1	807141	809647	807452	809647		orf19.12503|orf19.8877|IPF26018.1|IPF16024.1|IPF22191.1|IPF17055.1|Contig4-2781_0024|orf6.924|orf6.3313|CA0226|CA1692|orf19.5036|ATG20|CaO19.1297|CaO19.8877|IPF16024	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr4	809695	810963	-	orf19.5037	809695	810963	1	810963	809695	810963	809695		orf19.12504|IPF17054|IPF22188.1|IPF17054.2|orf6.3314|CA1693|CaO19.12504|HRQ2|CaO19.5037	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr4	812021	816520	+	orf19.5038	812021	816520	1	812021	816520	812074	816396		orf19.12505|IPF22196.1|IPF12305.2|orf6.3315|CA1694|TRM3|CaO19.12505|CaO19.5038	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	816364	817557	-	orf19.5039	816364	817557	1	817557	816364	817481	816489		orf19.12506|IPF22190.1|IPF12306.1|Contig4-2272_0001|Contig4-2272_0002|orf6.3316|CA1695|RRP42|CaO19.12506|CaO19.5039	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	817510	817759	+	ntar_784	817510	817759	1	817510	817759					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	817920	819946	+	orf19.5040	817920	819946	1	817920	819946	818048	819826		orf19.12507|IPF22186.1|IPF12310.2|Contig4-2272_0003|orf6.3317|CA1696|ASM4|CaO19.12507|CaO19.5040	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	819824	821191	-	orf19.5041	819824	821191	1	821191	819824	821011	819938		orf19.12508|IPF22189.1|IPF19742.1|Contig4-2272_0004|orf6.3318|CA6218|CaO19.5041|CaO19.12508|IPF19742	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	821221	822020	-	orf19.5042	821221	822020	1	822020	821221	821859	821221		orf19.12509|IPF22193.1|IPF16759.2|Contig4-2272_0004|orf6.3319|CaO19.12509|CaO19.5042	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr4	822057	824009	+	orf19.5043	822057	824009	1	822057	824009	822239	823705		orf19.12510|IPF17702.3|IPF16758.1|Contig4-1448_0002|Contig4-2272_0007|Contig4-2272_0008|orf6.3320|orf6.429|CA1697|CaO19.5043|IPF16758	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	826068	828471	+	orf19.5045	826068	828471	1	826068	828471	826204	828471		orf19.12512|IPF22192.1|IPF19279.2|IPF18627.1|IPF15681.2|Contig4-2568_0005|orf6.3322|orf6.427|CA1698|IPF15681	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr4	826947	827945	-	ntar_785	826947	827945	1	827945	826947	827201	827007			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	828049	828351	-	ntar_786	828049	828351	1	828351	828049					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	828509	830613	-	orf19.5046	828509	830613	1	830613	828509	830511	828754	RAM1	orf19.12513|IPF22187.1|IPF19534.2|Contig4-2773_0012|orf6.3323|CA1700|CaO19.5046|RAM1.5f|CA1699|RAM1.3f|IPF19535.1|IPF19534.1	Protein that acts in prenylation; transcription is alpha-factor induced; regulated in response to lovastatin and fluconazole [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	830961	831208	+	ntar_787	830961	831208	1	830961	831208					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	832143	834601	+	orf19.1596	832143	834601	1	832143	834601	832702	834546	FGR28	orf19.9164|IPF17205.1|IPF15031.1|Contig4-1965_0001|Contig4-1965_0002|orf6.1082|orf6.426|CA0296|CaO19.1596|LPF17|IFA11|CA0075|IFA24.3	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	834971	836922	+	orf19.1595	834971	836922	1	834971	836922	835182	836888		orf19.9163|IPF25734.1|IPF15033.2|Contig4-1965_0005|orf6.1081|CA0295|IPF15033.5eoc|IPF15033	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	836438	837530	-	orf19.789.1	836438	837530	1	837530	836438	837428	836988			Predicted ORF in Assembly 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	837669	841438	-	orf19.789	837669	841438	1	841438	837669	841339	837806	PYC2	orf19.8408|orf6.2989|IPF26382.1|IPF26504.1|IPF15163.2|IPF15167.2|Contig4-3027_0007|CA1464|PYC2.3f|PYC2.exon2	Putative pyruvate carboxylase, binds to biotin cofactor; up-regulated in mutant lacking the Ssk1p response regulator protein, upon benomyl treatment, or in an azole-resistant strain overexpressing MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	842699	843102	+	ntar_788	842699	843102	1	842699	843102					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	843434	845401	+	ntar_789	843434	845401	1	843434	845401	844524	844694			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	844616	844921	-	orf19.787	844616	844921	1	844921	844616	844921	844616		orf19.8406|IPF26483.1|IPF29675.1|orf6.558|CaO19.787|CaO19.8406	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	845625	846355	+	orf19.787.1	845625	846355	1	845625	846355	845676	845891		CA1463|PYC2.5f	ORF added to Assembly 21 based on comparative genome analysis; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	847295	847627	+	orf19.1207	847295	847627	1	847295	847627	847295	847627		IPF27537.1|Contig4-2606_0009|orf6.840|CaO19.1207	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	849772	850833	-	orf19.1208	849772	850833	1	850833	849772	850833	849772		IPF19849.1|Contig4-3026_0002|orf6.841	Predicted ORF in Assemblies 19, 20 and 21; member of a family encoded by FGR6-related genes in the RB2 repeat sequence [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	851957	852110	+	ntar_790	851957	852110	1	851957	852110					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	852786	852962	+	ntar_791	852786	852962	1	852786	852962					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	853775	855494	+	orf19.5312	853775	855494	1	853775	855494	854134	855291		orf19.12772|IPF21855.1|IPF8210.1|Contig4-2503_0001|orf6.8301|CA5480|CaO19.12772|CaO19.5312|IPF8210	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	858470	861320	+	orf19.5311	858470	861320	1	858470	861320	858597	861125		orf19.12771|IPF21821.1|IPF8205.1|Contig4-2503_0005|Contig4-2961_0001|Contig4-2961_0031|orf6.8300|CA5479|CaO19.5311|CaO19.12771|IPF8205	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	861382	861810	-	orf19.5308	861382	861810	1	861810	861382	861810	861382		orf19.12768|IPF21894.1|IPF8200.1|Contig4-2961_0002|orf6.8297|CaO19.12768|CaO19.5308	Predicted ORF in Assemblies 19, 20 and 21; induced by Rgt1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	864683	866572	+	orf19.5307	864683	866572	1	864683	866572	864845	866386	JEN2	orf19.12767|IPF8196.1|IPF8525.2|Contig4-2961_0006|orf6.8296|orf6.991|CA5478|CaO19.5307	Protein described as carboxylic acid transporter; induced by Rgt1p; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	866890	867306	+	orf19.5306	866890	867306	1	866890	867306	866890	867306			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	867608	868461	-	orf19.5305	867608	868461	1	868461	867608	868407	867793	RHD3	orf19.12765|orf6.8294|PGA29|IPF21875.1|IPF8527.1|Contig4-2961_0009|CA5476|LDG7|CaO19.12765|CaO19.5305|IPF8527	GPI-anchored cell wall protein; transcription is decreased upon yeast-hyphal switch; transcriptionally regulated by iron; expression greater in high iron; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	869238	869603	+	orf19.5304	869238	869603	1	869238	869603	869238	869603		orf19.12764|IPF21881.1|IPF8528.1|Contig4-2961_0010|orf6.8293|CaO19.5304|CaO19.12764	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	871177	872010	-	orf19.5303	871177	872010	1	872010	871177	872010	871177	PGA30	orf19.12763|IPF21868.1|IPF8532.2|Contig4-2961_0012|orf6.8292|CA5475|CaO19.5303|LDG6|CaO19.12763|IPF8532	Putative GPI-anchored protein of cell wall [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	874083	875200	-	orf19.5302	874083	875200	1	875200	874083	875200	874142	PGA31	orf19.12761|IPF21866.1|IPF8535.2|Contig4-2961_0018|orf6.3932|orf6.8290|CA2156|CaO19.5302|LDG5|IPF8535	Cell wall protein; putative GPI anchor; expression is regulated upon white-opaque switching; induced during cell wall regeneration; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	876658	878699	-	orf19.5300	876658	878699	1	878699	876658	878564	876819		orf19.12759|IPF18102.2|IPF8537.2|Contig4-2961_0019|Contig4-2961_0020|Contig4-2961_0021|orf6.3934|orf6.8288|CA2157|CNE1|CaO19.5300|IPF8537	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	878713	879591	-	orf19.5299	878713	879591	1	879591	878713	879516	878923	ECM1	orf19.12758|IPF21887.1|IPF8538.2|Contig4-2961_0022|orf6.3935|CA2158|CaO19.5299	Decreased mRNA abundance observed in cyr1 homozygous mutant hyphae; induced by heavy metal (cadmium) stress; Hog1p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	879814	880769	+	ntar_792	879814	880769	1	879814	880769	880332	880580			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	880630	882950	-	orf19.5297	880630	882950	1	882950	880630	882641	880749		orf19.12756|IPF21837.1|IPF19753.1|Contig4-2961_0028|Contig4-2961_0029|orf6.3937|CA2159|TFB1|CaO19.12756|CaO19.5297|IPF19753	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	882980	883810	+	orf19.5296	882980	883810	1	882980	883810	882980	883642		orf19.12755|IPF21874.1|IPF15664.2|orf6.3938|CA2160|FMP35|CaO19.12755|CaO19.5296|IPF15664	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	884117	885406	+	orf19.5295	884117	885406	1	884117	885406	884228	885319		orf19.12754|IPF21854.1|IPF11876.2|Contig4-2497_0007|orf6.3939|CA2161|CaO19.12754|EEP1|CaO19.5295|IPF11876	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	885407	886782	-	orf19.5294	885407	886782	1	886782	885407	886701	885562	PDB1	orf19.12753|IPF21857.1|IPF11877.2|Contig4-2497_0006|orf6.3940|CA2162|CaO19.12753|CaO19.5294	Protein described as similar to pyruvate dehydrogenase; fluconazole-induced; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	886922	887295	-	ntar_793	886922	887295	1	887295	886922					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	887766	888075	-	ntar_794	887766	888075	1	888075	887766					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	888164	890078	+	orf19.5293	888164	890078	1	888164	890078	888375	889898		orf19.12751|IPF19472.2|IPF11879.2|Contig4-2497_0003|Contig4-2497_0004|orf6.35|orf6.3941|CA2163|ACT2|CaO19.5293|CaO19.12751|IPF11879	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	889963	893592	-	orf19.5292	889963	893592	1	893592	889963	893236	890369	AXL2	orf19.12750|IPF21817.1|IPF11881.2|Contig4-2497_0002|orf6.3942|CA2164|CaO19.12750|CaO19.5292	Protein not essential for viability; similar to S. cerevisiae Axl2p, which is a plasma membrane protein involved in determination of budding pattern; O-glycosylated by Pmt4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	893809	894407	-	ntar_795	893809	894407	1	894407	893809					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	895700	896857	-	orf19.5291	895700	896857	1	896857	895700	896778	895777		orf19.12749|IPF21862.1|IPF17024.2|Contig4-2598_0011|orf6.3943|CA2165|CaO19.5291|SCS3|CaO19.12749|IPF17024	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	897063	898541	-	orf19.5290	897063	898541	1	898541	897063	898541	897198		orf19.12748|orf6.3944|IPF21848.1|IPF17022.3|CaO19.5290|CaO19.12748	Transcription is negatively regulated by Sfu1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	897198	899857	-	orf19.1430	897198	899857	1	899857	897198	899744	897198		orf19.12773|orf19.9006|IPF25911.1|IPF9379.3|IPF19810.1|IPF28064.1|Contig4-2598_0008|Contig4-2598_0009|orf6.6399|orf6.8302|CA3969|CA5481|orf19.5313|IPF9379.5eoc|IPF9379|IPF9379.2	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	898558	898998	+	ntar_796	898558	898998	1	898558	898998	898873	898998			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	900902	901842	-	orf19.1429	900902	901842	1	901842	900902	901810	901370	SOH1	orf19.9005|IPF25919.1|IPF9378.1|Contig4-2598_0004|orf6.6398|CA3968|CaO19.9005|CaO19.1429|IPF9378	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	902114	902766	+	orf19.1428	902114	902766	1	902114	902766	902219	902734		orf19.9004|IPF25920.1|IPF9377.1|Contig4-2598_0002|orf6.6397|CA3967|CaO19.1428|CaO19.9004|IPF9377	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	903172	904755	+	orf19.1427	903172	904755	1	903172	904755	903172	904668		orf19.9003|IPF25909.1|IPF9376.1|Contig4-2598_0001|orf6.6396|CA3966|CaO19.1427|CaO19.9003|IPF9376	Putative transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	904672	907402	-	orf19.1426	904672	907402	1	907402	904672	907123	904994		orf19.9002|IPF25901.1|IPF9375.2|orf6.6395|CA3965|CaO19.9002|CaO19.1426|IPF9375	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	908871	910729	+	orf19.1424	908871	910729	1	908871	910729	908945	910660		orf19.9000|IPF25904.1|IPF9370.2|Contig4-2191_0005|orf6.6393|CA3964|CaO19.1424|CaO19.9000|IPF9370	Predicted membrane transporter, member of the oxalate:formate antiporter (OFA) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	910583	913636	-	orf19.1422	910583	913636	1	913636	910583	913422	910798	FZO1	orf19.8998|IPF25897.1|IPF11233.2|Contig4-2191_0006|orf6.6391|CA3963|CaO19.8998|CaO19.1422|IPF11233	Putative mitochondrial biogenesis protein; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	913795	914508	+	orf19.1421	913795	914508	1	913795	914508	913834	914475		orf19.8997|IPF25916.1|IPF11234.1|Contig4-2563_0012|orf6.6390|CA3962|DAL3|CaO19.8997|CaO19.1421|IPF11234	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	914285	915358	-	orf19.1420	914285	915358	1	915358	914285	915330	914503		orf19.8996|IPF25912.1|IPF11235.2|Contig4-2563_0010|Contig4-2563_0011|orf6.6389|CA3961|CaO19.1420|CaO19.8996|IPF11235	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	915451	918327	+	orf19.1418	915451	918327	1	915451	918327	915503	918181	SEC15	orf19.8994|orf19.8995|IPF25910.1|IPF11238.2|Contig4-2563_0007|Contig4-2563_0009|orf6.6387|orf6.6388|CA3959|CA3960|orf19.1419|CaO19.8994|CaO19.1418|IPF11236.3f	Predicted exocyst subunit; ortholog of S. cerevisiae SEC15 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	917889	918753	-	orf19.1417	917889	918753	1	918753	917889	918582	918247		orf19.8993|IPF25924.1|IPF11239.1|Contig4-2563_0006|orf6.6386|CaO19.1417|FMP14|CaO19.8993	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	918783	919942	+	orf19.1416	918783	919942	1	918783	919942	918818	919639	COX11	orf19.8992|IPF25913.1|IPF11240.1|Contig4-2563_0004|Contig4-2563_0005|orf6.6385|CA3958|CaO19.1416|CaO19.8992	Protein repressed during the mating process; transcription is regulated by Nrg1p; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	919273	919570	-	ntar_797	919273	919570	1	919570	919273	919570	919385			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	922889	925506	+	orf19.1415	922889	925506	1	922889	925506	923142	925262	FRE10	orf19.8991|CFL95|FRE1|RBT2|IPF25902.1|IPF6709.2|Contig4-2963_0017|orf6.6384|CA3957|CaO19.1415|CaO19.8991	Major cell-surface ferric reductase under low-iron conditions; 7 transmembrane regions and a secretion signal predicted; repressed by Tup1p, Rim101p, Ssn6p, Hog1p, caspofungin; ciclopirox olamine induced; not required for filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	925591	926868	-	orf19.1414	925591	926868	1	926868	925591	926702	925797		orf19.8990|IPF25914.1|IPF6712.1|Contig4-2963_0013|orf6.6383|CA3955|WWM1|CaO19.1414|CaO19.8990|IPF6712.5f	Putative protein of unknown function, transcription is upregulated in an RHE model of oral candidiasis; predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	927182	928043	-	orf19.1413	927182	928043	1	928043	927182	927958	927425	YFH1	orf19.8989|orf6.6382|IPF25917.1|IPF6713.2|Contig4-2963_0011|CA3954|CaO19.1413|CaO19.8989	Frataxin; homolog of S. cerevisiae Yfh1p, mammalian frataxin; may be required for iron storage or delivery; role in oxidative stress resistance; transcription regulated by Nrg1p, repressed if iron absent, induced by macrophage interaction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	928190	929025	+	orf19.1412	928190	929025	1	928190	929025	928190	928822		orf19.8988|IPF25915.1|IPF6714.2|Contig4-2963_0009|orf6.6381|CA3953|CaO19.8988|CaO19.1412|IPF6714	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	929121	930928	+	orf19.1411	929121	930928	1	929121	930928	929121	930923		orf19.8987|IPF25905.1|IPF6716.1|Contig4-2963_0008|orf6.6380|CA3952|CaO19.8987|PAH1|CaO19.1411|IPF6716	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	930904	933515	-	orf19.1409	930904	933515	1	933515	930904	933438	931099	VAC7	orf19.8985|IPF25899.1|IPF6717.2|Contig4-2963_0006|orf6.6378|VAC7.3|CA3951|CaO19.8985|CaO19.1409	Protein not essential for viability; similar to S. cerevisiae Fab1p, which is an enzyme regulator involved in phospholipid metabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	934624	935514	-	orf19.1409.2	934624	935514	1	935514	934624	935405	935121			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	936876	938102	+	orf19.1409.1	936876	938102	2	936876|937517	936944|938102	936933	937879			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	940387	940662	-	orf19.1409.3	940387	940662	1	940662	940387	940662	940387			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	940637	941143	-	ntar_798	940637	941143	1	941143	940637	940816	940637			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	944068	946400	-	orf19.3846	944068	946400	1	946400	944068	946259	944205	LYS4	orf19.11327|IPF23444.1|IPF4077.2|Contig4-3060_0033|orf6.7541|CA4869|CaO19.11327|CaO19.3846	Protein described as homoaconitase; regulated by Gcn4p, Gcn2p; induced in response to amino acid starvation (3-aminotriazole treatment); upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	947588	949334	+	orf19.3845	947588	949334	1	947588	949334	947694	949217	FGR3	orf19.11326|IPF23458.1|IPF4078.1|Contig4-3060_0032|orf6.7540|CA4868|CaO19.11326|CaO19.3845|IPF4078	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	948455	949381	-	ntar_799	948455	949381	1	949381	948455	949172	948966			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	949452	950218	+	orf19.3844	949452	950218	1	949452	950218	949500	950117	MRP8	orf19.11325|IPF23479.1|IPF4080.1|Contig4-3060_0029|orf6.7539|CA4867|CaO19.11325|CaO19.3844|IPF4080	Protein not essential for viability; similar to S. cerevisiae Mrp8p, which is a mitochondrial ribosomal protein; greater transcription in hyphal form than yeast form [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	950346	951322	+	orf19.3843	950346	951322	1	950346	951322	950420	951226		orf19.11324|IPF23471.1|IPF4083.1|Contig4-3060_0028|orf6.7538|CA4866|CaO19.11324|SEC66|CaO19.3843|IPF4083	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	951289	954061	-	orf19.3841	951289	954061	1	954061	951289	953871	951367		orf19.11322|IPF4085|IPF23437.1|IPF4085.1|Contig4-3060_0026|orf6.7536|CA4865|CaO19.3841|ATG1|CaO19.11322	Predicted ORF in Assemblies 19, 20 and 21; described as similar to S. cerevisiae Apg1p; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	954639	959113	-	orf19.3840	954639	959113	1	959113	954639	959014	954788		orf19.11321|IPF23489.1|IPF4087.1|Contig4-3060_0022|orf6.7535|CA4864|CaO19.11321|CaO19.3840|IPF4087	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	960963	962375	+	orf19.3839	960963	962375	1	960963	962375	961014	962375	SAP10	orf19.11320|orf6.7534|IPF23460.1|IPF4089.1|Contig4-3060_0016|CA4863|YPS3|CaO19.11320|CaO19.3839|IPF4089	Secreted aspartyl proteinase; roles in adhesion, virulence (RHE model), cell surface integrity; distinct specificity from Sap9p; at cell membrane and wall; GPI-anchored; N-glycosylated; expression greater in low iron; Tbf1p-activated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr4	962342	963933	-	orf19.3838	962342	963933	2	963933|963324	963690|962342	963769	962763	EFB1	orf19.11319|IPF23480.1|IPF4091.1|Contig4-3060_0012|orf6.7533|CA4862	Translation elongation factor EF-1 beta; downregulated in the presence of human whole blood or polymorphonuclear cells; macrophage/pseudohyphal-induced; antigenic in mouse; functional homolog of S. cerevisiae Efb1p; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	964082	964988	-	orf19.3836	964082	964988	1	964988	964082	964922	964170		orf19.11317|IPF23468.1|IPF4094.1|Contig4-3060_0009|orf6.7531|CA4861|CaO19.11317|CaO19.3836|IPF4094	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	965061	969451	+	orf19.3833	965061	969451	1	965061	969451	965204	969403		orf19.11314|orf19.11316|IPF23441.1|IPF23449.1|IPF15927.2|IPF19804.1|IPF15927.5f|Contig4-3060_0003|Contig4-3060_0005|orf6.7528|orf6.7530|CA4859|CA4860|orf19.3835	Putative DNA-binding transcription factor; decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	969567	970567	+	orf19.3831	969567	970567	1	969567	970567	969601	970431		orf19.11312|IPF15931.3|IPF15929.1|Contig4-3060_0002|orf6.7526|CA4858|CaO19.11312|CaO19.3831|IPF15927.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	970529	972261	-	orf19.3829	970529	972261	1	972261	970529	972261	970615	PHR1	orf19.11310|orf6.7524|IPF23455.1|IPF15932.2|Contig4-2187_0001|Contig4-3060_0001|CA4857|CaO19.3829|CaO19.11310	Glycosidase of cell surface; may act on cell-wall beta-1,3-glucan prior to beta-1,6-glucan linkage; E169 and E270 at active site; role in systemic but not vaginal virulence (neutral, not low pH); high pH or filamentation induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	972397	972648	-	ntar_800	972397	972648	1	972648	972397					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	973277	973609	-	orf19.3828	973277	973609	1	973609	973277	973609	973277		orf19.11309|IPF23487.1|IPF20174.1|orf6.7523|CaO19.11309|CaO19.3828	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	974393	975700	-	orf19.3827	974393	975700	1	975700	974393	975579	974569		orf19.11308|IPF23465.1|IPF15950.2|Contig4-2187_0004|Contig4-2187_0006|orf6.7522|CA4856|CaO19.11308|CaO19.3827|IPF15950	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	976457	977739	-	orf19.3826	976457	977739	1	977739	976457	977449	976601		orf19.11307|IPF23472.1|IPF5830.2|Contig4-2989_0002|orf6.7521|CA4855|CaO19.11307|CaO19.3826|IPF5830	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	978107	978490	-	ntar_801	978107	978490	1	978490	978107					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	979346	980368	+	orf19.3825	979346	980368	1	979346	980368	979399	980244	RCE1	orf19.11306|IPF23473.1|IPF5825.1|Contig4-2989_0006|orf6.7520|CA4854|CaO19.11306|CaO19.3825	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	982083	987318	+	orf19.3823	982083	987318	1	982083	987318	982303	987240	ZDS1	orf19.11304|CES1|IPF23484.1|IPF5823.2|Contig4-2989_0013|orf6.7518|CA4853|IPF5823	Nonessential protein; similar to S. cerevisiae Zds1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	987658	989236	+	orf19.3822	987658	989236	1	987658	989236	987869	989005	SCS7	orf19.11303|orf6.7517|IPF23462.1|IPF5819.1|Contig4-2989_0014|CA4852|CaO19.3822|CaO19.11303	Protein described as ceramide hydroxylase; transcription is regulated by Nrg1p; transcriptionally regulated by iron; expression greater in high iron; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	989142	990554	-	orf19.3821	989142	990554	1	990554	989142	990508	989321		orf19.11302|IPF23461.1|IPF5818.1|Contig4-2989_0015|orf6.7516|CA4851|CaO19.11302|CaO19.3821|IPF5818	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	996165	997715	-	orf19.3820	996165	997715	1	997715	996165	997715	996165		orf19.11301|IPF23456.1|IPF3257.2|Contig4-3009_0010|orf6.1534|orf6.7515|orf6.1854|CA4850|CTN2|CaO19.3820|CaO19.11301|Cirt2	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	998850	999245	-	orf19.3819	998850	999245	1	999245	998850	999245	998880		orf19.11300|IPF23488.1|IPF28641.1|Contig4-2979_0001|orf6.7514|CaO19.11300|CaO19.3819	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	999262	1000334	-	orf19.3818	999262	1000334	1	1000334	999262	1000098	999262	GOA1	orf19.11299|orf6.7513|IPF6954|IPF23470.1|IPF6954.1|Contig4-2979_0002|CA4849|CaO19.3818|CaO19.11299	Protein required for respiratory growth, resistance to oxidants, chlamydospore formation, hyphal growth under some conditions, and virulence; relocalizes from the cytoplasm to the mitochondrion during oxidative or osmotic stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1000452	1001443	+	orf19.3817	1000452	1001443	1	1000452	1001443	1000608	1001327		orf19.11298|IPF23476.1|IPF6953.1|Contig4-2979_0004|orf6.7512|CA4848|CaO19.11298|RTS2|CaO19.3817	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1001277	1004444	-	orf19.3815	1001277	1004444	1	1004444	1001277	1004278	1001429		orf19.11296|IPF23429.1|IPF6951.2|Contig4-2979_0005|Contig4-2979_0008|orf6.7510|CA4847|CaO19.3815|UBP7|CaO19.11296|IPF6951	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1005004	1006645	-	orf19.3813	1005004	1006645	1	1006645	1005004	1006645	1005143		orf19.11294|orf19.11295|IPF23481.1|IPF23467.1|IPF6946.2|IPF6945.2|Contig4-2979_0010|Contig4-2979_0011|orf6.7508|orf6.7509|CA4845|CA4846|orf19.3814|IPF6945.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	1006771	1006856	-	tq(uug)5	1006771	1006856	2	1006856|1006805	1006819|1006771				tQ(UUG)5.2	tRNA-Gln predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1006867	1006949	-	tq(uug)4	1006867	1006949	2	1006949|1006901	1006912|1006867				tQ(UUG)4.2	tRNA-Gln predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1007627	1009352	+	orf19.3812	1007627	1009352	1	1007627	1009352	1007666	1009288	SSZ1	orf19.11293|IPF23457.1|IPF6943.1|Contig4-2979_0013|orf6.7507|CA4844|PDR13|CaO19.11293|CaO19.3812	Protein described as an HSP70 chaperone; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1009575	1011542	+	orf19.3811	1009575	1011542	1	1009575	1011542	1009631	1011325	GYP1	orf19.11292|IPF23453.1|IPF6940.2|Contig4-2979_0016|orf6.7506|CA4843|CaO19.11292|CaO19.3811	Transcription is regulated by Nrg1p, Mig1p, and Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1011708	1012809	+	orf19.3810	1011708	1012809	1	1011708	1012809	1011783	1012754		orf19.11291|IPF23466.1|IPF6938.2|Contig4-2979_0018|orf6.7505|CA4842|CaO19.3810|MTD1|CaO19.11291	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1013121	1015417	+	orf19.3809	1013121	1015417	1	1013121	1015417	1013121	1015337		FIL1|orf19.11290|IPF23442.1|IPF10355.2|Contig4-2979_0019|orf6.1870|orf6.7504|CA4841|BAS1|CaO19.11290|CaO19.3809|IPF10355	Putative transcription factor with Myb-like DNA-binding motif; similar to S. cerevisiae Bas1p, which is a regulator of purine biosynthetic genes; ADE genes are not induced during GCN response in C. albicans, in contrast to S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1015529	1015615	+	ti(aau)4	1015529	1015615	2	1015529|1015580	1015566|1015615				tI(AAU)4.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1015784	1017677	+	orf19.3806	1015784	1017677	1	1015784	1017677	1015974	1017470		orf19.11287|IPF10359.2|IPF19367.2|Contig4-2432_0005|orf6.1869|orf6.261|CA0753|CaO19.3806|IPF10359	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1017454	1018506	-	orf19.3804	1017454	1018506	1	1018506	1017454	1018439	1017672		orf19.11285|IPF23475.1|IPF10360.2|Contig4-2432_0004|orf6.1867|orf6.263|CA0041|CaO19.3804|IPF10360	Predicted ORF in Assemblies 19, 20 and 21; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1018712	1020679	-	orf19.3803	1018712	1020679	1	1020679	1018712	1020660	1018891	MNN22	orf19.11284|IPF10363.2|IPF10361.3|Contig4-2432_0003|orf6.1866|orf6.264|CA0752|MNN24|CaO19.3803	Protein described as similar to Golgi alpha-1,2-mannosyltransferase; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg; Hog1p-induced; induced by nitric oxide; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1018718	1020257	+	ntar_802	1018718	1020257	1	1018718	1020257	1018974	1019123			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1022492	1025381	+	orf19.3802	1022492	1025381	1	1022492	1025381	1022690	1025188	PMT6	orf19.11283|PMT3|IPF10365.3|IPF9088.2|Contig4-2789_0009|orf6.1474|orf6.1865|CA0503|CaO19.3802	Protein mannosyltransferase, required for virulence in mouse systemic infection and for adhesion to endothelium; has a role in hyphal growth signaling and hygromycin B sensitivity; not a major contributor to overall cellular PMT activity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1027634	1030180	+	orf19.3801	1027634	1030180	1	1027634	1030180	1027634	1030180	FAV1	orf19.11282|IPF9090.2|IPF28628.1|Contig4-2789_0005|Contig4-3100_0023|orf6.201|orf6.2919|CA1424|CaO19.3801|IPF9090	Protein with weak similarity to S. cerevisiae Fus2p; induced by alpha pheromone mating factor in MTLa/MTLa opaque cells [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1033188	1034860	+	orf19.3799	1033188	1034860	1	1033188	1034860	1033344	1034444		orf19.11280|IPF23463.1|IPF14247.2|Contig4-3100_0004|orf6.2917|CA1423|CaO19.3799|RTN1|CaO19.11280|IPF14247	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1034800	1036015	-	orf19.3798	1034800	1036015	1	1036015	1034800	1035964	1034894		orf19.11279|IPF23464.1|IPF14248.2|Contig4-3100_0008|orf6.2916|CA1422|CaO19.3798|TRM8|CaO19.11279|IPF14248	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1036081	1037149	-	orf19.3797	1036081	1037149	1	1037149	1036081	1037061	1036285		orf19.11278|IPF14249.2|IPF6901.3|Contig4-2569_0002|orf6.2915|orf6.3070|CA1421|MRPL11|CaO19.3797	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1037319	1039455	+	orf19.3796	1037319	1039455	1	1037319	1039455	1037525	1039360		orf19.11277|IPF14250.2|IPF6904.1|Contig4-2569_0003|Contig4-2569_0004|orf6.2914|orf6.3069|CA1420|RNT1|CaO19.3796	Putative Dicer RNAse involved in RNA interference, similar to S. cerevisiae Rnt1p but orthologous to S. castellii Dcr1p, which is not conserved in S. cerevisiae; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1039478	1041319	-	orf19.3795	1039478	1041319	1	1041319	1039478	1041176	1039635	AGP3	orf19.11275|IPF23454.1|IPF6906.1|Contig4-2569_0006|orf6.3068|CA1525|CaO19.3795	Putative serine transporter with possible role in assimilation of sulfur; induced upon early biofilm formation; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1042100	1044596	-	orf19.3794	1042100	1044596	1	1044596	1042100	1044409	1042268	CSR1	orf19.11274|SUR1|ZAP1|IPF23443.1|IPF6909.2|Contig4-2569_0008|orf6.3067|CA1524|CaO19.3794|CaO19.11274	Putative zinc-finger transcription factor involved in zinc homeostasis; involved in negative regulation of biofilm matrix; similar to S. cerevisiae Zap1p; mutation affects filamentous growth; suppresses S. cerevisiae rok1 mutant inviability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1048066	1049692	+	orf19.3793	1048066	1049692	1	1048066	1049692	1048357	1049574		orf19.11273|IPF6913.2|IPF28637.1|Contig4-2349_0003|orf6.3066|orf6.758|CA0173|CaO19.3793|IPF6913	Putative protein of unknown function; mRNA binds to She3p; regulated by Nrg1p; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1049716	1052304	-	orf19.3792	1049716	1052304	1	1052304	1049716	1052250	1049893		orf19.11272|IPF16676.3|IPF6915.2|Contig4-2349_0001|orf6.3065|orf6.757|CA1523|PAT1|CaO19.3792	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1053024	1053998	+	orf19.3791	1053024	1053998	1	1053024	1053998	1053028	1053975	FGR10	orf19.11270|IPF18742.2|IPF6916.1|Contig4-2732_0021|orf6.2561|orf6.3064|CA1522|CaO19.3791|IPF6916	Putative asparaginase; lacks ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1053235	1055066	-	orf19.3789	1053235	1055066	2	1055066|1054631	1054984|1053235	1054625	1054158	RPL24A	IPF18743.1|IPF6918.1|Contig4-2732_0018|Contig4-2732_0019|orf6.2560|orf6.3062|CA1189|RPL24|CaO19.3789	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1055368	1056072	+	orf19.3788.1	1055368	1056072	2	1055368|1055633	1055451|1056072	1055449	1055950	RPL30	IPF6920.1|IPF19420.2|Contig4-2732_0016|CA1188|RPL30.3f|RPL30.3	Similar to S. cerevisiae L30 ribosomal subunit; pre-mRNA is alternatively spliced to productive and unproductive transcripts; splicing is temperature-regulated; colony morphology-related gene regulation by Ssn6p; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1055984	1056886	-	orf19.3788	1055984	1056886	1	1056886	1055984	1056829	1056086		orf19.11268|IPF23477.1|IPF6922.2|Contig4-2732_0015|orf6.152|orf6.2559|CA0023|CaO19.3788|IPF6922	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1057031	1058631	+	orf19.3787	1057031	1058631	1	1057031	1058631	1057101	1058219		orf19.11267|IPF19904.1|IPF19825.2|Contig4-2732_0011|Contig4-2732_0013|orf6.153|orf6.2558|CA1187|QRI7|KAE1|CaO19.3787	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1058155	1059332	-	orf19.3785	1058155	1059332	1	1059332	1058155	1059239	1058403		orf19.11265|IPF23469.1|IPF6930.1|Contig4-2732_0010|orf6.2556|CA1186|CaO19.3785|CaO19.11265|IPF6930	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1059566	1060509	+	orf19.3784	1059566	1060509	1	1059566	1060509	1059628	1060509		IPF19903.1|IPF28638.1|Contig4-2732_0007|orf6.2555|CA1185|CaO19.3784|IPF19903.5f|IPF19903	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1060538	1061006	+	orf19.3783	1060538	1061006	1	1060538	1061006	1060560	1061006		orf19.11264|IPF28639.1|Contig4-2732_0006|CA6282|CaO19.3783|IPF19903.3f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1062272	1063255	-	orf19.3782.2	1062272	1063255	2	1063255|1063013	1063182|1062272	1062999	1062736		IPF23425.1|IPF14802.1|Contig4-2732_0004|CA1184|IPF14802	ORF Predicted by Annotation Working Group; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1063858	1065733	+	orf19.3782	1063858	1065733	1	1063858	1065733	1063925	1065586		orf19.11263|IPF14805.2|IPF28636.1|Contig4-2732_0001|Contig4-2732_0003|orf6.2554|CA1183|CaO19.11263|CaO19.3782|IPF14805	Predicted membrane transporter, member of the peptide-acetyl-coA transporter (PAT) family, major facilitator superfamily (MFS); transcription is induced in response to alpha pheromone in Spider medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1065601	1067220	-	orf19.3781	1065601	1067220	1	1067220	1065601	1067081	1065681		orf19.11262|IPF23459.1|IPF15222.3|orf6.1130|orf6.2553|CA0325|CaO19.3781|IPF15222|IPF15222.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1068098	1069490	+	orf19.3780	1068098	1069490	1	1068098	1069490	1068165	1069463		orf19.11261|orf6.1131|IPF18745.2|IPF15220.2|Contig4-2648_0002|Contig4-2648_0003|orf6.2552|CA0326|CaO19.3780|IPF15220	Protein likely to be essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1069603	1071270	+	orf19.3778	1069603	1071270	1	1069603	1071270	1069672	1071231		orf19.11259|orf19.11260|IPF23474.1|IPF23478.1|IPF15219.2|IPF15217.2|Contig4-2648_0005|Contig4-2648_0007|orf6.2592|orf6.1133|orf6.1132|CA0328|CA0327|orf19.3779|IPF15217.3f	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU); downregulated in core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1071335	1071908	+	orf19.3777	1071335	1071908	1	1071335	1071908	1071383	1071754		orf19.11258|IPF13432.2|IPF15216.2|orf6.1134|orf6.2593|CA0329|CaO19.3777|IMG2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1071751	1076908	-	orf19.3775	1071751	1076908	1	1076908	1071751	1076415	1071964	SSK2	orf19.11257|IPF13431.2|IPF28626.1|IPF19716.1|Contig4-2648_0009|orf6.2292|orf6.2594|CA6281|CA1205|orf19.3776|SSK2.5f	Protein described as similar to MAP kinase kinase kinases; transcription is downregulated in response to treatment with ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1077037	1078100	+	orf19.3774.1	1077037	1078100	1	1077037	1078100	1077301	1077522		IPF15404.1|IPF18792.1|Contig4-2542_0003|CA1206|HUB1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1077583	1079314	-	orf19.3774	1077583	1079314	1	1079314	1077583	1078892	1077642	PPG1	orf19.11256|IPF18739.1|IPF15402.2|Contig4-2542_0004|Contig4-2542_0005|orf6.2291|orf6.2595|CA1207|CaO19.3774	Putative protein phosphatase of the Type 2A-related family (serine/threonine-specific), similar to S. cerevisiae Ppg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1080025	1082390	+	orf19.3773	1080025	1082390	1	1080025	1082390	1080242	1082263		orf19.11255|IPF17195.2|IPF18793.1|IPF15400.2|Contig4-2542_0009|Contig4-2542_0011|Contig4-2542_0012|orf6.2289|orf6.2596|orf6.2290|CA1208|CA6280|orf19.3772|CaO19.3773|IPF17195.5f	Putative RNAse III, ortholog of S. cerevisiae RNT1; predicted ORF in Assemblies 19, 20 and 21; merged with orf19.3772 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1082177	1083810	-	orf19.3770	1082177	1083810	1	1083810	1082177	1083762	1082395	ARG8	orf19.11254|IPF13486.2|IPF18794.1|IPF17196.2|Contig4-2542_0013|orf6.2288|orf6.2597|orf6.2287|CA6279|CA1209|orf19.3771|ARG8.5f	Predicted ORF in Assemblies 19, 20 and 21; Gcn2p-, Gcn4p-regulated; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1083954	1086209	-	orf19.3769	1083954	1086209	1	1086209	1083954	1086089	1084026		orf19.11253|IPF23445.1|IPF13485.2|Contig4-2542_0016|Contig4-2542_0017|orf6.2286|orf6.2598|CA1019|ZRG17|CaO19.3769|IPF13485	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1086388	1086611	+	ntar_803	1086388	1086611	1	1086388	1086611					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1086494	1091938	-	orf19.736	1086494	1091938	1	1091938	1086494	1091860	1086617		orf19.11252|orf19.8355|IPF23494.1|IPF13479.2|IPF26554.1|IPF16695.2|Contig4-1880_0002|orf6.526|orf6.2285|CA1018|CA0102|orf19.3768|IPF16695.5eoc|IPF16695	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1092188	1096267	-	orf19.738	1092188	1096267	1	1096267	1092188	1096185	1092235	MYO5	orf19.8357|IPF14461.3|IPF29710.1|orf6.2409|orf6.528|CA1087|CaO19.738|IPF14461.2	Class I myosin; nonessential; role in cortical actin patch polarity and polar budding; required for hyphal growth; regulatory phosphorylation on S366; downregulated on adherence to polystyrene; sole class I myosin in C. albicans [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1097096	1099574	-	orf19.740	1097096	1099574	2	1099574|1098459	1099275|1097096	1099281	1097336	HAP41	orf19.8359|IPF26555.1|IPF13319.2|Contig4-2600_0002|orf6.2411|CA1088|CaO19.740|CaO19.8359|IPF13319	Predicted ORF in Assemblies 19, 20 and 21; not required for response to low iron; possibly spurious ORF (Annotation Working Group prediction); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1100824	1101332	-	ntar_804	1100824	1101332	1	1101332	1100824	1101248	1101126			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1101018	1101596	+	ntar_805	1101018	1101596	1	1101018	1101596					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1101663	1102134	-	ntar_806	1101663	1102134	1	1102134	1101663					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1103178	1103346	+	ntar_807	1103178	1103346	1	1103178	1103346					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1103363	1103793	+	ntar_808	1103363	1103793	1	1103363	1103793	1103363	1103539			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1104396	1104710	-	orf19.741	1104396	1104710	1	1104710	1104396	1104710	1104396		orf19.8360|IPF26562.1|IPF18494.1|orf6.4130|CaO19.8360|CaO19.741	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1104814	1106849	-	orf19.742	1104814	1106849	1	1106849	1104814	1106556	1104883	ALD6	orf19.8361|IPF26552.1|IPF16300.2|Contig4-2969_0013|orf6.4131|CA2290|CaO19.8361|CaO19.742|IPF16300	Expression is regulated upon white-opaque switching; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1107180	1107741	-	ntar_809	1107180	1107741	1	1107741	1107180	1107341	1107207			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1107817	1108566	+	ntar_810	1107817	1108566	1	1107817	1108566	1107817	1107948			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1108493	1113255	-	orf19.744	1108493	1113255	1	1113255	1108493	1113201	1108618	GDB1	orf19.8363|IPF26560.1|IPF9743.2|IPF9740|orf6.4133|CA2291|CaO19.744|CaO19.8363	Putative glycogen debranching enzyme; expression is regulated upon white-opaque switching; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1114995	1117446	+	orf19.745	1114995	1117446	1	1114995	1117446	1115505	1117262	VAC8	orf19.8364|IPF26550.1|IPF9747.1|Contig4-2360_0004|orf6.4134|CA2292|CaO19.8364|CaO19.745	Protein involved in vacuolar inheritance; required for hyphal growth; contains armadillo repeats [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1117391	1119141	-	orf19.746	1117391	1119141	1	1119141	1117391	1119048	1117501		orf19.8365|IPF26553.1|IPF9748.2|Contig4-2360_0002|Contig4-2360_0003|orf6.4135|CA2293|CaO19.746|CaO19.8365|IPF9748	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1119314	1120639	-	orf19.747	1119314	1120639	1	1120639	1119314	1120639	1119419	NBP35	orf19.8367|IPF26556.1|IPF19946.1|Contig4-2360_0001|orf6.4136|CA2294|CaO19.747|IPF19946	Similar to nucleotide-binding proteins; increased transcription is observed upon benomyl treatment; transcription is induced upon filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	1120789	1125132	-	orf19.748	1120789	1125132	1	1125132	1120789	1125132	1120885		orf19.8368|orf19.14146|orf19.14147|IPF20259.1|IPF8467.2|IPF26549.1|IPF16922.2|Contig4-2307_0003|Contig4-2307_0004|orf6.4137|orf6.7005|orf6.7006|CA4459|CA4460|orf19.6856|orf19.6857|CaO19.748|NUP145	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1125151	1126783	-	orf19.6858	1125151	1126783	1	1126783	1125151	1126754	1125216		orf19.14148|IPF8470|IPF20272.1|IPF8470.2|Contig4-2307_0005|orf6.7007|CA4461|CaO19.6858	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1127126	1127599	-	orf19.6859	1127126	1127599	1	1127599	1127126	1127599	1127126		orf19.14149|IPF20287.1|IPF17251.1|Contig4-1532_0003|Contig4-2307_0006|orf6.7008|CA4462|CaO19.6859|IPF17251	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1128599	1129763	+	orf19.6860	1128599	1129763	1	1128599	1129763	1128823	1129515		orf19.14150|IPF20282.1|IPF9827.2|Contig4-2844_0001|orf6.7009|CA4463|CaO19.14150|PIS1|CaO19.6860	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1129479	1132090	-	orf19.6861	1129479	1132090	1	1132090	1129479	1132050	1129654		orf19.14151|IPF20261.1|IPF9828.2|Contig4-2844_0002|orf6.7010|CA4464|APC5|CaO19.6861|CaO19.14151|IPF9828	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1132137	1134570	-	orf19.6862	1132137	1134570	1	1134570	1132137	1134550	1132241		orf19.14152|IPF20266.1|IPF9829.1|Contig4-2844_0004|orf6.7011|CA4465|CaO19.6862|CaO19.14152|IPF9829	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1134842	1137513	-	orf19.6863	1134842	1137513	1	1137513	1134842	1137404	1134939	VPH1	orf19.14153|IPF20260.1|IPF9830.1|Contig4-2844_0005|orf6.7012|CA4466|CaO19.14153|CaO19.6863	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p, Mig1p, and Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1139183	1139890	+	orf19.6864	1139183	1139890	1	1139183	1139890	1139183	1139890		orf19.14154|IPF20286.1|IPF9833.1|Contig4-2844_0011|orf6.7013|CA4467|CaO19.6864|CaO19.14154|IPF9833	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1140096	1144432	+	orf19.2631	1140096	1144432	1	1140096	1144432	1140158	1144204		orf19.14155|IPF15693.2|IPF18972.1|IPF20275.1|IPF9835.1|Contig4-2844_0012|orf6.850|orf6.1436|orf6.7014|CA0204|orf19.1222|orf19.6865|CaO19.2631	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1144130	1144970	-	orf19.2630	1144130	1144970	1	1144970	1144130	1144940	1144293	RAD59	IPF16191.2|orf6.1435|CA0479|CaO19.2630|IPF16191	Protein similar to S. cerevisiae Rad59p; N-terminal similarity with Rad52p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1145084	1151627	+	orf19.2629	1145084	1151627	1	1145084	1151627	1145110	1151538		IPF10478.3|IPF19694.1|Contig4-2660_0013|Contig4-2660_0014|Contig4-2660_0015|orf6.1433|orf6.912|orf6.913|orf6.1434|CA6235|CA6236|orf19.1293|orf19.1294|USO1.5eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1151753	1154391	+	orf19.1291	1151753	1154391	1	1151753	1154391	1151753	1154221	ABZ1	orf19.9352|orf19.9353|IPF10474.2|Contig4-2660_0010|Contig4-2660_0012|orf6.1155|orf6.910|orf6.1154|CA0220|orf19.1786|orf19.1787|CaO19.1291	Protein not essential for viability; similar to S. cerevisiae Abz1p, which is para-aminobenzoate (PABA) synthase; reports differ on whether a murine homolog exists [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	1154590	1156710	+	orf19.1290	1154590	1156710	1	1154590	1156710	1154642	1156606	XKS1	orf19.9354|IPF19103.2|IPF25535.1|IPF25530.1|IPF10471.2|IPF10472.2|Contig4-2660_0006|orf6.909|orf6.1156|CA0341|orf19.1788	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1156891	1158405	+	orf19.1789	1156891	1158405	1	1156891	1158405	1156891	1158354		orf19.9355|IPF25532.1|IPF10470.2|Contig4-2660_0001|orf6.1157|CA0342|CaO19.9355|CaO19.1789|IPF10470	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1158811	1160359	+	orf19.1789.1	1158811	1160359	1	1158811	1160359	1159049	1160197	LYS1	orf19.9356|IPF25528.1|IPF25539.1|IPF29306.1|IPF10469.3|Contig4-2934_0006|orf6.1158|CA0343|orf19.1790|CA2460|LYS1.3eoc|IPF18465.1|LYS1.5eoc|IPF10469.2	Saccharopine dehydrogenase (biosynthetic); enzyme of alpha-aminoadipate lysine biosynthesis pathway; functionally complements S. cerevisiae lys1 mutation; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1160168	1161894	-	orf19.1791	1160168	1161894	1	1161894	1160168	1161801	1160326		orf19.9357|IPF25533.1|IPF8738.2|Contig4-1853_0004|orf6.4370|CA2461|MAK11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1162041	1164438	+	orf19.1792	1162041	1164438	1	1162041	1164438	1162041	1164398		orf19.9358|IPF25526.1|IPF8736.2|Contig4-1853_0002|orf6.4371|CA2462|CaO19.9358|CDC16|CaO19.1792	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	1165692	1166763	-	ntar_811	1165692	1166763	1	1166763	1165692	1166409	1166251			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1165981	1166170	+	ntar_812	1165981	1166170	1	1165981	1166170					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1166853	1169063	+	orf19.1793	1166853	1169063	1	1166853	1169063	1167226	1169013		orf19.9359|IPF8730|IPF25531.1|IPF8730.2|Contig4-2654_0004|orf6.4372|CA2463|CaO19.1793|CaO19.9359	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1169191	1170369	-	orf19.1794	1169191	1170369	1	1170369	1169191	1170295	1169213		orf19.9360|IPF25538.1|IPF8727.1|Contig4-2654_0005|orf6.4373|CA2464|CaO19.9360|CaO19.1794|IPF8727	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1170885	1174081	+	orf19.1795	1170885	1174081	1	1170885	1174081	1171147	1173936	PUF3	orf19.9361|IPF8726|IPF25523.1|IPF8726.2|Contig4-2654_0006|orf6.4374|CA2465|CaO19.9361|CaO19.1795	Protein not essential for viability; similar to S. cerevisiae Puf3p, which is an mRNA-binding protein involved in RNA catabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1174123	1174669	-	orf19.1795.1	1174123	1174669	1	1174669	1174123	1174572	1174324		CA2466|IPF8725|IPF8725.2	ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1174880	1176241	+	orf19.1796	1174880	1176241	1	1174880	1176241	1174948	1176042		orf19.9362|IPF25537.1|IPF8724.2|Contig4-2654_0009|orf6.4375|CA2467|CaO19.9362|CaO19.1796|IPF8724	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1176248	1178442	-	orf19.1797	1176248	1178442	1	1178442	1176248	1177569	1176382		orf19.9363|IPF25536.1|IPF8723.2|orf6.4376|CA2468|CaO19.9363|CaO19.1797|IPF8723	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation; has GutQ domain, which is associated with phosphosugar binding [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1178453	1178664	+	ntar_813	1178453	1178664	1	1178453	1178664					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1179153	1183979	-	orf19.1798	1179153	1183979	1	1183979	1179153	1183964	1179489	TSC2	orf19.9364|IPF7393|IPF7393.2|IPF29308.1|Contig4-2057_0001|Contig4-2807_0001|orf6.4377|CA2469|CaO19.1798	Putative GTPase-activating protein involved in control of filamentous growth; not essential for viability; similar to mammalian tuberin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1184139	1186164	-	orf19.1799	1184139	1186164	1	1186164	1184139	1186101	1184245		orf19.9365|IPF19643.2|IPF19644.1|Contig4-3019_0033|orf6.2231|orf6.4378|GAP6|CA0981|GAP12|CaO19.1799|GAP4	Putative general amino acid permease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1186496	1188153	-	orf19.1800	1186496	1188153	1	1188153	1186496	1187977	1186649		orf19.9366|IPF25534.1|IPF7397.2|Contig4-2461_0003|orf6.2232|CA0982|VPS62|CaO19.1800|CaO19.9366|IPF7397	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1186516	1187012	+	ntar_814	1186516	1187012	1	1186516	1187012					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1187156	1187435	+	ntar_815	1187156	1187435	1	1187156	1187435					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1188539	1189910	-	orf19.1801	1188539	1189910	1	1189910	1188539	1189820	1188936		orf19.9367|IPF25540.1|IPF7398.2|Contig4-2461_0005|orf6.2233|CA0983|CaO19.1801|CBR1|CaO19.9367	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1190511	1192557	-	orf19.1802	1190511	1192557	1	1192557	1190511	1192479	1190626		orf19.9368|IPF25529.1|IPF7400.2|Contig4-2461_0007|Contig4-2461_0009|orf6.2234|CA0984|CaO19.1802|IPF7400	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1192610	1193293	+	ntar_816	1192610	1193293	1	1192610	1193293					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1194098	1194751	-	ntar_817	1194098	1194751	1	1194751	1194098	1194751	1194554			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1204774	1206312	+	orf19.1234	1204774	1206312	1	1204774	1206312	1204774	1206312	FGR6-10	orf19.8819|IPF26070.1|IPF10582.1|Contig4-1717_0002|Contig4-2111_0005|orf6.5083|CA2978|CaO19.8819|CaO19.1234|IFV2	Protein lacking an ortholog in S. cerevisiae; member of a family encoded by FGR6-related genes in the RB2 repeat sequence; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1210068	1212014	+	orf19.1235	1210068	1212014	1	1210068	1212014	1210282	1211916	HOM3	orf19.8820|IPF26072.1|IPF14675.2|orf6.5082|CA2977|CaO19.8820|CaO19.1235	Putative L-aspartate 4-P-transferase; fungal-specific (no human or murine homolog); regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1211915	1213206	-	orf19.1236	1211915	1213206	1	1213206	1211915	1213108	1212143		orf19.8821|IPF14676.2|IPF12543.2|Contig4-2681_0004|orf6.5081|orf6.710|CA2976|CaO19.1236|IPF14676	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1213348	1213827	+	ntar_818	1213348	1213827	1	1213348	1213827					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1213456	1215132	-	orf19.1237	1213456	1215132	1	1215132	1213456	1215124	1213553	ARO9	orf19.8822|IPF14677.1|IPF12542.2|Contig4-2681_0003|orf6.5080|orf6.711|CA2975|CaO19.1237	Aromatic transaminase of the Ehrlich fusel oil pathway of aromatic alcohol biosynthesis; Rim101p-dependent pH-regulation (alkaline induced) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1215383	1217139	-	orf19.1238	1215383	1217139	2	1217139|1217016	1217097|1215383	1217104	1215528	TUB4	orf19.8823|IPF26076.1|IPF12541.2|Contig4-2139_0001|Contig4-2681_0002|orf6.5079|orf6.712|CA0159|TUB4.3	Putative gamma-tubulin; induced upon adherence to polystyrene; transcription is regulated by Nrg1p and Mig1p; periodic mRNA expression, peak at cell-cycle S/G2 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1217355	1219099	-	orf19.1239	1217355	1219099	1	1219099	1217355	1219046	1218060		orf19.8824|IPF12540.1|IPF29520.1|Contig4-2139_0003|orf6.5078|CA2974|CaO19.1239|CaO19.8824|IPF12540	Predicted ORF in Assemblies 19, 20 and 21; exogenously expressed protein is a substrate for Kex2p processing in vitro; fluconazole-downregulated; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1221392	1229685	+	orf19.1240	1221392	1229685	1	1221392	1229685	1221392	1229599		orf19.8825|IPF26084.1|IPF9887.3|orf6.2676|orf6.5077|CA1261|CaO19.1240|IPF9887|IPF9887.3eoc|IPF9887.2	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	1230003	1233704	+	orf19.1244	1230003	1233704	1	1230003	1233704	1230716	1233544	GYP2	orf19.8829|IPF26053.1|IPF9881.2|Contig4-2415_0004|orf6.2680|CA1262|CaO19.1244|CaO19.8829|MDR1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1233601	1237083	-	orf19.1246	1233601	1237083	1	1237083	1233601	1237024	1233893		orf19.8830|IPF15574.3|IPF9880.2|Contig4-2415_0005|Contig4-2415_0007|orf6.2682|orf6.3013|CA1263|CaO19.1246|IPF9880	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1237151	1238052	-	orf19.1247	1237151	1238052	1	1238052	1237151	1237944	1237483		orf19.8831|IPF15575.2|IPF18723.2|Contig4-1942_0002|orf6.2683|orf6.3012|CA1482|CaO19.1247|IPF15575	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1238098	1239260	+	orf19.1248	1238098	1239260	1	1238098	1239260	1238180	1239136		orf19.8832|IPF15576.2|IPF18722.2|Contig4-1942_0004|orf6.3011|CA1481|CaO19.8832|RPB3|CaO19.1248	Putative protein of unknown function; heterozygous null mutant exhibits resistance to parnafungin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1239045	1240123	-	orf19.1249	1239045	1240123	1	1240123	1239045	1240045	1239206		orf19.8833|IPF26083.1|IPF15577.2|Contig4-1942_0005|orf6.3010|CA1480|CaO19.8833|HIS6|CaO19.1249	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1240109	1241365	+	orf19.1250	1240109	1241365	1	1240109	1241365	1240249	1241235		orf19.8834|IPF26082.1|IPF16428.2|orf6.3009|CA1479|CaO19.1250|CaO19.8834|IPF16428	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1241159	1243646	-	orf19.1251	1241159	1243646	1	1243646	1241159	1243508	1241271	BRN1	orf19.8835|IPF26062.1|IPF16426.2|Contig4-2236_0005|orf6.3008|CA1478|CaO19.8835|CaO19.1251|IPF16426	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1245652	1248071	+	orf19.1252	1245652	1248071	1	1245652	1248071	1245692	1247755	YME1	orf19.8836|IPF26065.1|IPF14644.2|Contig4-2236_0003|orf6.3007|CA1477|CaO19.1252|CaO19.8836	Protein not essential for viability; similar to S. cerevisiae Yme1p, which is a mitochondrial inner membrane protease of the AAA family [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1249281	1251853	+	orf19.1253	1249281	1251853	1	1249281	1251853	1249554	1251533		orf19.8838|IPF14649.2|IPF10541.2|Contig4-2799_0001|orf6.3005|orf6.5720|CA3452|CaO19.1253|IPF10541	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1251966	1254466	+	orf19.1254	1251966	1254466	1	1251966	1254466	1252053	1254341	SEC23	orf19.8839|IPF26061.1|IPF10536.2|Contig4-2799_0002|orf6.5721|CA3453|CaO19.8839|sec231|CaO19.1254	Transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1256231	1259235	+	orf19.1255	1256231	1259235	1	1256231	1259235	1256317	1259235		ZCF5|orf19.8841|orf19.8842|IPF26057.1|IPF26091.1|IPF10533.2|IPF19641.1|Contig4-2799_0004|orf6.2897|orf6.5722|orf6.5723|CA3454|CA3455|orf19.1256|IPF10533.5f|IPF10533.exon1	[NOT TRANSCRIBED?] Putative transcription factor with zinc cluster DNA-binding motif; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr4	1260882	1261499	-	ntar_819	1260882	1261499	1	1261499	1260882					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1262779	1263111	+	orf19.1257	1262779	1263111	1	1262779	1263111	1262779	1263111		IPF29533.1|orf6.5724|CaO19.1257	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1263855	1264824	+	orf19.1258	1263855	1264824	1	1263855	1264824	1263995	1264708		orf19.8843|IPF15051.2|IPF29522.1|Contig4-2968_0001|orf6.402|orf6.5725|CA0066|CaO19.1258|IPF15051	Predicted ORF in Assemblies 19, 20 and 21; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg; transcription is induced in response to alpha pheromone in SpiderM medium; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1264805	1269414	-	orf19.1259	1264805	1269414	1	1269414	1264805	1269219	1264888		orf19.8844|IPF26095.1|IPF19986.1|Contig4-2968_0002|orf6.5726|CA3456|CaO19.1259|SNT2|CaO19.8844|IPF19986	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1269588	1270598	-	orf19.1260	1269588	1270598	1	1270598	1269588	1270531	1269830	LEA1	orf19.8845|IPF26087.1|IPF8521.1|Contig4-2968_0003|orf6.5727|CA3457|CaO19.8845|CaO19.1260|IPF8521	Protein similar to S. cerevisiae Lea1p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1270687	1272275	+	orf19.1261	1270687	1272275	1	1270687	1272275	1270777	1272126	CGT1	orf19.8846|IPF26081.1|IPF18334.2|IPF8518.2|IPF8519.1|Contig4-2968_0008|orf6.5728|CA3459|CGT1.3f	mRNA 5' guanylyltransferase; small subunit of mRNA capping enzyme; binds an RNA Pol II C-terminal domain peptide; Cet1p and Cgt1p form a 2:1 complex; functional homolog of S. cerevisiae Ceg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1272228	1274731	-	orf19.1263	1272228	1274731	1	1274731	1272228	1274639	1272357	CFL1	orf19.8848|orf6.5730|FRE1|IPF26060.1|IPF8516.2|Contig4-2968_0009|CA3460|CaO19.8848|CaO19.1263	Protein similar to ferric reductase Fre10p; possible functional homolog of S. cerevisiae Fre1p (reports differ); transcription is negatively regulated by Sfu1p, copper, amphotericin B, caspofungin; induced by ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1274943	1275641	-	ntar_820	1274943	1275641	1	1275641	1274943					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1276847	1279353	-	orf19.1264	1276847	1279353	1	1279353	1276847	1279299	1277083	CFL2	orf19.8849|orf6.5731|FRE2|IPF26059.1|IPF8512.2|CFL97|Contig4-2968_0010|Contig4-2968_0011|CA3461|CaO19.8849|CaO19.1264	Iron utilization protein; similar to an S. cerevisiae oxidoreductase, Ynr060Wp; regulated by Sfu1p, Nrg1p, Tup1p, Rim101p; alkaline, low iron, fluphenazine, ciclopirox olamine, flucytosine, induced; caspofungin, amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1282652	1286506	+	orf19.1265	1282652	1286506	1	1282652	1286506	1282684	1286478		orf19.8850|IPF26103.1|IPF14959.2|Contig4-2968_0013|orf6.5732|CA3462|TRS130|CaO19.1265|IPF14959	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1286656	1287788	+	ntar_821	1286656	1287788	1	1286656	1287788	1287277	1287507			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1286907	1288182	-	orf19.1266	1286907	1288182	1	1288182	1286907	1287813	1287448		orf19.8852|IPF10280.1|IPF14956.3|Contig4-1503_0003|orf6.5733|CA0944|CaO19.1266|IPF10280|orf6.2158	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1288367	1290009	+	orf19.1267	1288367	1290009	1	1288367	1290009	1288486	1289871		orf19.8853|IPF10278.2|IPF29519.1|Contig4-2192_0011|orf6.2159|CA0945|CaO19.1267|DJP2|CaO19.8853|IPF10278	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1290223	1290489	+	orf19.1267.1	1290223	1290489	1	1290223	1290489	1290223	1290489		IPF26052.1|IPF10277.2|Contig4-2192_0002|CA0946|IPF10277	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1290702	1291043	+	orf19.1268	1290702	1291043	1	1290702	1291043	1290702	1291043		orf19.8854|IPF26094.1|IPF29526.1|Contig4-2192_0003|Contig4-2192_0004|orf6.2160|CaO19.1268|CaO19.8854	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1291382	1293565	+	orf19.1270	1291382	1293565	1	1291382	1293565	1291382	1293565		orf19.8856|IPF26063.1|IPF10273.2|FRE3|CFL99|CFL3|Contig4-2192_0007|orf6.2162|CA0947|CaO19.8856|CaO19.1270	Predicted ORF in Assemblies 19, 20 and 21; similar to ferric reductase Fre10p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr4	1293601	1295117	-	orf19.1272	1293601	1295117	1	1295117	1293601	1295087	1293849		orf19.8858|IPF26080.1|IPF10270.2|Contig4-2192_0009|orf6.2164|CA0948|CaO19.8858|CaO19.1272|IPF10270	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1295782	1296305	+	orf19.1273	1295782	1296305	1	1295782	1296305	1295913	1296305		orf19.8859|IPF10269.1|IPF29523.1|Contig4-2799_0007|orf6.2165|CA0949|CaO19.1273|GIM3|CaO19.8859|IPF10269	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr4	1296853	1298544	-	orf19.1274	1296853	1298544	1	1298544	1296853	1298544	1296853		orf19.8861|IPF10266.2|Contig4-1689_0001|Contig4-2799_0004|orf6.2166|CaO19.1274	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1301408	1304142	+	orf19.1275	1301408	1304142	1	1301408	1304142	1302003	1304069	GAT1	orf19.8862|orf6.2898|GAT99|IPF26064.1|IPF12290.2|Contig4-2741_0008|CA1410|CaO19.8862|CaO19.1275	Zinc finger transcriptional regulator of nitrogen utilization; required for nitrogen catabolite repression and utilization of isoleucine, tyrosine and tryptophan N sources; required for virulence in a mouse systemic infection model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1304376	1305227	+	orf19.1276	1304376	1305227	1	1304376	1305227	1304540	1305046		orf19.8863|IPF26090.1|IPF12292.2|orf6.2899|YOR054|CA6187|CaO19.1276|CaO19.8863|IPF12292	Predicted ORF in Assemblies 19, 20 and 21; not essential for viability; similar to S. cerevisiae Vhs3p, which is a putative phosphopantothenoylcysteine decarboxylase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1305099	1306752	-	orf19.1277	1305099	1306752	1	1306752	1305099	1306454	1305276		orf19.8864|IPF19348.2|IPF11858.2|Contig4-2741_0002|orf6.2900|orf6.303|CA1411|CaO19.1277|IPF11858	Predicted ORF in Assemblies 19, 20 and 21; repressed by Rgt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1309148	1312806	-	orf19.4403	1309148	1312806	1	1312806	1309148	1312615	1309313	VPS11	orf19.11881|orf19.8865|IPF26100.1|IPF11854.3|IPF19197.2|IPF11853.2|Contig4-2866_0002|orf6.2901|orf6.2825|orf6.656|CA1412|CA1361|orf19.1278|CaO19.4403|PEP5	Protein involved in protein trafficking; putative role in vesicle-target membrane fusion; mutant lacks vacuole; role in hyphal growth, possibly via vacuole expansion into hypha; role in killing of and survival within macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1312798	1315316	+	ntar_822	1312798	1315316	1	1312798	1315316	1312798	1313097			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1312956	1315160	-	orf19.4404	1312956	1315160	1	1315160	1312956	1315160	1312956	PGA49	orf19.11882|IPF11851.3|IPF14598.2|Contig4-2866_0003|orf6.2824|orf6.657|CA1360|CaO19.4404|IPF14598	[NOT TRANSCRIBED?] Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1320983	1322253	-	ntar_823	1320983	1322253	1	1322253	1320983	1321458	1321219			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1320997	1324241	+	orf19.4405	1320997	1324241	1	1320997	1324241	1321074	1324130	PPS1	orf19.11883|IPF22864.1|IPF11842.2|Contig4-2866_0017|orf6.2823|CA1359|CaO19.11883|CaO19.4405|IPF11842	Putative dual specificity protein phosphatase, similar to S. cerevisiae Pps1p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1324892	1325096	-	ntar_824	1324892	1325096	1	1325096	1324892	1325096	1324965			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1325061	1325132	-	tt(ugu)2	1325061	1325132	1	1325132	1325061				tT(UGU)2.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1325600	1326705	+	orf19.4406	1325600	1326705	2	1325600|1325756	1325683|1326705	1325647	1326561		orf19.11884|IPF11838.3|IPF11837.2|Contig4-2866_0019|orf6.2822|orf6.400|CA1358|NIF3|CaO19.4406	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1326846	1329216	+	orf19.4407	1326846	1329216	1	1326846	1329216	1327013	1329091		orf19.11885|IPF11835.3|IPF28414.1|orf6.2975|orf6.401|CA0065|CaO19.4407|IPF11835|CA1456|IPF11835.3eoc|IPF15083.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1329186	1331379	-	orf19.4409	1329186	1331379	1	1331379	1329186	1331300	1329225		orf19.11887|IPF15081|IPF22844.1|IPF15081.2|orf6.2973|CA1455|CaO19.11887|CaO19.4409	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1331637	1331718	+	ts(uga)2	1331637	1331718	1	1331637	1331718				tS(UGA)2.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1331810	1333311	+	orf19.4410	1331810	1333311	1	1331810	1333311	1331871	1333241	ALG1	orf19.11888|IPF22854.1|IPF19918.1|Contig4-1803_0004|orf6.2972|CA1454|CaO19.4410|CaO19.11888	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Alg1p, which is a mannosyltransferase involved in N-linked protein glycosylation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1333125	1334577	-	orf19.4411	1333125	1334577	1	1334577	1333125	1334577	1333267	HOS1	orf19.11889|IPF22853.1|IPF6469.2|Contig4-1803_0002|orf6.2971|CA1453|CaO19.11889|CaO19.4411	Histone deacetylase; similar to S. cerevisiae Hos1p; has conserved deacetylation motif; slightly greater expression in white cells than in opaque cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1334619	1337981	-	orf19.4412	1334619	1337981	1	1337981	1334619	1337960	1334619		orf19.11890|IPF22862.1|IPF6472.2|orf6.2970|orf6.4227|CA1452|REV1|CaO19.4412	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1338154	1339089	+	orf19.4413	1338154	1339089	2	1338154|1338426	1338203|1339089	1338201	1338872	CMD1	orf19.11891|IPF16778.1|IPF6473.1|Contig4-2875_0013|orf6.2969|orf6.4226|CA1451|CaO19.4413|CMD1.3f	Calmodulin; calmodulin inhibitors cause a defect in hyphal growth; not transcriptionally regulated by yeast-hyphal transition; mutation confers hypersensitivity to cytochalasin D and high concentrations of tunicamycin; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1339152	1340446	+	orf19.4414	1339152	1340446	1	1339152	1340446	1339277	1340446		orf19.11892|IPF16776.2|IPF6474.1|Contig4-2875_0012|orf6.2968|orf6.4225|CA1450|CaO19.4414|IPF6474	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1340611	1341549	+	orf19.4415	1340611	1341549	1	1340611	1341549	1340790	1341398		orf19.11893|IPF18480.1|IPF6475.2|Contig4-2875_0010|orf6.2967|orf6.4224|CA2354|CaO19.4415|IPF18480	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1341961	1351271	+	orf19.4416	1341961	1351271	1	1341961	1351271	1341961	1351212	VPS13	orf19.11894|IPF22856.1|IPF19756.1|Contig4-2875_0007|Contig4-2875_0009|orf6.4223|CA2353|CaO19.11894|CaO19.4416	Predicted ORF in Assemblies 19, 20 and 21; gene used for multilocus sequence typing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	1351158	1352460	-	orf19.4418	1351158	1352460	1	1352460	1351158	1352431	1351352	FMT1	orf19.11896|IPF22855.1|IPF6482.2|Contig4-2875_0006|orf6.4221|CA2352|CaO19.4418|CaO19.11896	Protein described as a methionyl-tRNA transformylase; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1352454	1353448	+	orf19.4418.1	1352454	1353448	1	1352454	1353448	1352612	1352788			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1352777	1355224	-	orf19.4420	1352777	1355224	1	1355224	1352777	1355224	1352822		orf19.11898|IPF22843.1|IPF19947.1|Contig4-2875_0014|orf6.4219|CA2351|CaO19.4420|RRN6|CaO19.11898|IPF19947	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1355400	1358107	+	orf19.4719	1355400	1358107	1	1355400	1358107	1355471	1357963	CWH41	orf19.11899|GLS1|PRB1|IPF22852.1|IPF15907.2|IPF8229.2|Contig4-2812_0012|orf6.4218|orf6.3155|CA2350|CA1581|orf19.4421|CaO19.4719|CWH41.3eoc	Processing alpha glucosidase I, involved in N-linked protein glycosylation and assembly of cell wall beta 1,6 glucan [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1357996	1360304	-	orf19.4718	1357996	1360304	1	1360304	1357996	1360213	1358105	TRP5	IPF8232.2|Contig4-2812_0008|Contig4-2812_0010|orf6.3154|CA1580|CaO19.4718	Predicted tryptophan synthase; Gcn4p-regulated; upregulated in biofilm; identified in detergent-resistant membrane fraction (possible lipid raft component); predicted N-terminal acetylation; S. cerevisiae ortholog is Gcn4p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1362478	1364188	+	orf19.4716	1362478	1364188	1	1362478	1364188	1362564	1363934	GDH3	IPF8236.1|Contig4-2812_0004|orf6.3152|CA1579|CaO19.4716|GDH1	Protein described as similar to NADP-glutamate dehydrogenase; hyphal downregulated expression; transcription is regulated by Nrg1p, Plc1p; downregulated by Efg1p; upregulated by Rim101p at pH 8; ciclopirox olamine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1364687	1376291	+	orf19.4715	1364687	1376291	1	1364687	1376291	1364687	1376167		orf19.10441|IPF24455.1|IPF15988.2|IPF8243.2|Contig4-2802_0015|orf6.3454|orf6.3151|CA1797|CA1578|orf19.2924|NUM11.5eoc|NUM11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	1376201	1377878	-	orf19.2923	1376201	1377878	1	1377878	1376201	1377736	1376309		orf19.10440|IPF24433.1|IPF11448.2|Contig4-2802_0001|orf6.3455|CA1798|CaO19.10440|CaO19.2923|IPF11448	Predicted membrane transporter, member of the drug:proton antiporter (14 spanner) (DHA2) family, major facilitator superfamily (MFS); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1378274	1379094	-	orf19.2922	1378274	1379094	4	1379094|1378718|1378437|1378318	1378770|1378525|1378384|1378274	1379094	1378274		orf19.10439|IPF24465.1|IPF11446.1|Contig4-2802_0002|orf6.3456|CA1799|IPF11446	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1379411	1381024	+	orf19.2921	1379411	1381024	1	1379411	1381024	1379468	1380976		orf19.10438|IPF17316.2|IPF11445.2|Contig4-2802_0004|orf6.168|orf6.3457|CA1800|PAC2|CaO19.2921|IPF11445	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1380752	1381590	-	orf19.2920	1380752	1381590	1	1381590	1380752	1381535	1380981		orf19.10437|IPF17317.1|IPF11444.1|Contig4-2802_0005|orf6.167|orf6.3458|CA1801|CaO19.2920|IPF11444	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1382230	1382369	-	snrnau4	1382230	1382369	1	1382369	1382230					Highly conserved U4 small nuclear RNA involved in splicing; ortholog of S. cerevisiae SNR14 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1382494	1386118	-	orf19.2919	1382494	1386118	1	1386118	1382494	1386118	1382555	MPH1	orf19.10436|IPF24463.1|IPF11443.2|Contig4-2802_0009|orf6.3459|orf6.166|CA1802|CaO19.2919|IPF11443	Protein similar to S. cerevisiae Mph1p, which is a DNA helicase involved in DNA repair; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr4	1386162	1386535	+	orf19.2917.1	1386162	1386535	1	1386162	1386535	1386209	1386418			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1386448	1388147	-	orf19.2917	1386448	1388147	1	1388147	1386448	1388086	1386506		orf19.10434|IPF24432.1|IPF16748.2|Contig4-2802_0011|orf6.3461|CA1803|CaO19.10434|CaO19.2917|IPF16748	Putative protein of unknown function; heterozygous null mutant exhibits resistance to parnafungin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1388545	1389225	-	orf19.2916	1388545	1389225	1	1389225	1388545	1389225	1388545		orf19.10433|IPF11804.2|IPF28950.1|Contig4-2490_0004|Contig4-2802_0013|orf6.1792|orf6.3462|CA0705|CaO19.2916|IPF11804	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1389326	1391712	-	orf19.2915	1389326	1391712	1	1391712	1389326	1391624	1389537		orf19.10432|IPF24419.1|IPF11806.1|Contig4-2490_0003|orf6.1791|CA0704|CaO19.10432|YND1|CaO19.2915|IPF11806	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1391767	1393280	+	orf19.2914	1391767	1393280	1	1391767	1393280	1391861	1393177		orf19.10431|IPF18894.2|IPF11807.1|Contig4-2490_0001|orf6.1790|CA0703|CaO19.2914|CaO19.10431|IPF11807	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1393195	1395819	-	orf19.2911	1393195	1395819	1	1395819	1393195	1395682	1393310	SEC3	orf19.10430|IPF28948.1|Contig4-2490_0006|orf6.1789|orf6.6111|CA6271|CA0702|orf19.2913|IPF11812.5f	Predicted subunit of the exocyst complex, involved in exocytosis; required for hyphal growth after the first septin ring formation; interacts with septins Cdc3p, Cdc10p, and Cdc11p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1395960	1397222	+	orf19.2910	1395960	1397222	1	1395960	1397222	1396431	1397141	PGA43	orf19.10428|IPF24446.1|IPF13139.2|Contig4-2946_0022|orf6.6112|CA3759|CaO19.2910|CaO19.10428|IPF13139	Putative GPI-anchored protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1397014	1398339	-	orf19.2909	1397014	1398339	1	1398339	1397014	1398286	1397234	ERG26	orf19.10427|IPF24436.1|IPF13138.2|Contig4-2946_0020|orf6.6113|CA3760|CaO19.10427|CaO19.2909	C-3 sterol dehydrogenase, catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1398670	1400002	-	orf19.2908	1398670	1400002	1	1400002	1398670	1399778	1398702		orf19.10426|IPF24435.1|IPF13137.1|Contig4-2946_0019|orf6.6114|CA3761|CaO19.2908|FZD4|CaO19.10426|IFR3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1400083	1401354	+	orf19.2907.1	1400083	1401354	1	1400083	1401354	1400113	1400409		IPF24466.1|IPF13136.1|Contig4-2946_0018	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1400855	1401538	-	orf19.2907	1400855	1401538	1	1401538	1400855	1401538	1400855			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1401969	1402335	+	ntar_825	1401969	1402335	1	1401969	1402335	1401969	1402175			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1402455	1403760	-	orf19.2906	1402455	1403760	1	1403760	1402455	1403382	1402492	PGA41	orf19.10424|IPF19507.2|IPF13070.2|Contig4-2946_0014|orf6.6116|orf6.259|CA3763|CaO19.2906|IPF13070	Putative GPI-anchored protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1403924	1404817	-	orf19.2905	1403924	1404817	1	1404817	1403924	1404817	1404149		orf19.10423|IPF24447.1|IPF13072.2|Contig4-2946_0011|orf6.6117|CA3764|CaO19.10423|CaO19.2905|IPF13072	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	1404244	1404457	+	ntar_826	1404244	1404457	1	1404244	1404457					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1406343	1406727	-	ntar_827	1406343	1406727	1	1406727	1406343	1406537	1406343			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1407026	1410111	+	orf19.2903	1407026	1410111	1	1407026	1410111	1407229	1409982		orf19.10421|orf19.10422|IPF24422.1|IPF16014.2|IPF18298.3|Contig4-2946_0009|orf6.6119|orf6.6118|CA3766|CA3765|orf19.2904|IPF18298.3f	Putative Argonaute protein involved in RNA silencing, member of the Argonaute family; predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression, regulated by Cyr1p, Ras1p, Efg1p, Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1410017	1412256	-	orf19.2901	1410017	1412256	1	1412256	1410017	1412144	1410309	NUP60	orf19.10419|IPF24425.1|IPF13471.2|Contig4-2946_0006|Contig4-2946_0007|orf6.6121|CA3767|CaO19.2901|CaO19.10419	Protein not essential for viability; similar to S. cerevisiae Nup60p, which is a subunit of the nuclear pore complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1412506	1413294	-	orf19.2899	1412506	1413294	1	1413294	1412506	1413294	1412506		orf19.10417|IPF24439.1|IPF13467.1|Contig4-2946_0003|orf6.6123|CA3768|OAR2|CaO19.2899|CaO19.10417|IPF13467	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1413425	1415251	-	orf19.2898	1413425	1415251	1	1415251	1413425	1415251	1413566		orf19.10416|IPF24429.1|IPF13465.2|Contig4-2946_0001|orf6.6124|CA3769|CaO19.2898|CaO19.10416|IPF13465	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	1417178	1418020	+	orf19.2897	1417178	1418020	1	1417178	1418020	1417178	1418020	SOU2	orf19.10415|IPF24440.1|IPF13462.2|Contig4-2677_0002|Contig4-2677_0004|orf6.6125|CA3770|CaO19.2897|CaO19.10415	Protein similar to Sou1p; not required for utilization of L-sorbose [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1418783	1419850	+	orf19.2896	1418783	1419850	1	1418783	1419850	1418888	1419733	SOU1	orf19.10414|IPF24438.1|IPF11150.2|Contig4-2677_0008|orf6.6126|CA3771|CaO19.2896|CaO19.10414	Enzyme involved in utilization of L-sorbose; has sorbitol dehydrogenase, fructose reductase, and sorbose reductase activities; has NAD-binding site motif; transcriptional regulation affected by chromosome 5 copy number [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1419782	1420854	-	orf19.2895	1419782	1420854	1	1420854	1419782	1420702	1419899	VMA8	orf19.10413|Contig4-2677_0009|IPF24442.1|IPF11151.1|orf6.6127|CA3772|CaO19.2895|CaO19.10413	Protein similar to the S. cerevisiae Vma8p subunit of vacuolar H+-ATPase; transcription is regulated by Nrg1p and Mig1p; transcription is increased in populations of cells exposed to fluconazole over multiple generations [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1421029	1423569	+	orf19.2893	1421029	1423569	1	1421029	1423569	1421029	1423566		orf19.10411|IPF11153|IPF24416.1|IPF11153.1|Contig4-2677_0010|orf6.6129|CA3773|SYF1|CaO19.10411|CaO19.2893	Putative protein of unknown function, regulation correlates with clinical development of fluconazole resistance; transcription is upregulated in an RHE model of oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	1425944	1429456	+	orf19.2892	1425944	1429456	1	1425944	1429456	1426618	1429254		orf19.10410|IPF24414.1|IPF10437.2|Contig4-2827_0022|orf6.6130|CA3774|CaO19.2892|CaO19.10410|IPF10437	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1429678	1431879	-	orf19.2891	1429678	1431879	1	1431879	1429678	1431586	1429955		orf19.10409|IPF24431.1|IPF10436.2|Contig4-2827_0002|orf6.6131|CA3775|AFG11|CaO19.2891|CaO19.10409|AFG1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1432073	1433527	-	orf19.2890	1432073	1433527	1	1433527	1432073	1433389	1432160		orf19.10408|IPF24434.1|IPF10435.2|Contig4-2827_0007|orf6.6132|CA3776|CaO19.2890|CaO19.10408|IPF10435	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1433593	1434197	+	orf19.2889	1433593	1434197	1	1433593	1434197	1433682	1434119		orf19.10407|IPF24456.1|IPF10432.2|Contig4-2827_0009|orf6.6133|CA3777|CaO19.2889|CaO19.10407|IPF10432	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1433812	1434991	-	orf19.2888	1433812	1434991	1	1434991	1433812	1434862	1434188		orf19.10406|IPF24448.1|IPF10431.2|Contig4-2827_0010|orf6.6134|CA3778|CaO19.2888|CaO19.10406|IPF10431	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1435736	1435981	+	ntar_828	1435736	1435981	1	1435736	1435981					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1436123	1437284	+	orf19.2887	1436123	1437284	1	1436123	1437284	1436372	1436986	MET13	orf19.10405|IPF10429.2|IPF28949.1|Contig4-2827_0012|orf6.1818|orf6.6135|CA0721|CaO19.2887|IPF10429	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-induced; amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1437014	1439432	-	orf19.2886	1437014	1439432	1	1439432	1437014	1439059	1437788	CEK1	orf19.10404|ERK1|IPF14791.2|IPF28947.1|Contig4-2827_0013|orf6.1819|CA0722|CaO19.2886	ERK-family protein kinase, required for wild-type yeast-hyphal switching, mating efficiency, and virulence in a mouse model; Cst20p-Hst7p-Cek1p-Cph1p MAPK pathway regulates mating, and invasive hyphal growth under some conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1442132	1443897	-	orf19.2885	1442132	1443897	1	1443897	1442132	1443855	1442224	PRI2	orf19.10403|IPF24426.1|IPF14788.3|Contig4-2827_0021|orf6.1820|CA0723|CaO19.10403|CaO19.2885|IPF14788.2	Gene adjacent to CDC68; divergently transcribed with CDC68 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1444222	1447680	+	orf19.2884	1444222	1447680	1	1444222	1447680	1444317	1447499	CDC68	orf19.10402|IPF24469.1|IPF10512.3|Contig4-2689_0011|orf6.2896|CA1409|CaO19.2884|SPT16|CaO19.10402|IPF10512.2	Functional homolog of S. cerevisiae Cdc68p, which is a transcription elongation factor; essential; possible drug target [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1447511	1449050	-	orf19.2883	1447511	1449050	1	1449050	1447511	1448707	1447715	CSO99	orf19.10401|IPF24437.1|IPF10513.2|Contig4-2689_0010|orf6.2895|CA1408|CaO19.10401|CSO1|CaO19.2883|IPF10513	Protein of unknown function, not conserved in S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1449510	1449969	+	ntar_829	1449510	1449969	1	1449510	1449969	1449648	1449851			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1450055	1451933	-	orf19.2882	1450055	1451933	1	1451933	1450055	1451933	1450158	XUT1	orf19.10400|IPF24424.1|IPF10516.2|Contig4-2689_0006|orf6.2894|CA1407|CaO19.10400|UAP2|CaO19.2882|UAPC	Putative high-affinity, high-capacity xanthine-uric acid/H+ symporter; similar to A. nidulans UapA; member of the Nucleobase-Ascorbate Transporter/Nucleobase-Cation Symporter (NAT/NCS2) family [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr4	1453643	1454011	+	ntar_830	1453643	1454011	1	1453643	1454011					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1453882	1454204	-	ntar_831	1453882	1454204	1	1454204	1453882					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1454351	1454501	-	ntar_832	1454351	1454501	1	1454501	1454351					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1456665	1457007	-	ntar_833	1456665	1457007	1	1457007	1456665					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1456758	1460598	+	orf19.2881	1456758	1460598	1	1456758	1460598	1457501	1460491	MNN4	orf19.10399|orf6.4390|IPF16016.2|IPF28958.1|Contig4-2084_0003|orf6.296|CA2477|CaO19.2881|IPF16016	Protein required for normal mannosylphosphorylation of oligosaccharides linked to cell wall proteins, not required for virulence or kidney colonization in mouse systemic infection or for normal interaction with macrophages [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1461278	1465204	-	orf19.2879	1461278	1465204	1	1465204	1461278	1465204	1461278	IFF5	orf19.10397|IPF15521.2|IPF16017.3|Contig4-2765_0012|orf6.297|orf6.4388|CA2476|CaO19.2879	[NOT TRANSCRIBED?] Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1461581	1465379	+	ntar_834	1461581	1465379	1	1461581	1465379	1463382	1463723			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1466747	1467244	+	orf19.2878	1466747	1467244	1	1466747	1467244	1466747	1467244	PGA15	orf19.10396|IPF24451.1|IPF3233.1|Contig4-2826_0011|orf6.4387|CA2475|CaO19.2878|CaO19.10396|IPF3233	Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1466750	1470339	-	orf19.2877	1466750	1470339	1	1470339	1466750	1469944	1468241	PDC11	orf19.10395|orf6.4386|IPF24428.1|IPF3234.1|Contig4-2826_0006|Contig4-2826_0007|CA2474|PDC1|CaO19.10395|CaO19.2877	Protein similar to pyruvate decarboxylase; antigenic; at hyphal cell surface, not yeast-form cells; soluble in hyphae; regulated by Gcn4p, Efg1p, Efh1p; fluconazole-, farnesol-, biofilm-induced; repressed upon amino acid starvation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1471048	1472374	+	orf19.2876	1471048	1472374	2	1471048|1471491	1471211|1472374	1471203	1472237	CBF1	orf19.10394|IPF24445.1|IPF3238.1|Contig4-2826_0005|orf6.4385|CA2473|CaO19.10394|CaO19.2876	Transcription factor that binds to a conserved sequence at ribosomal protein genes and the rDNA locus, with Tbf1p; also regulates sulfur starvation-response and other genes; binds centromeres and has a role in centromere maintenance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1472549	1473534	+	orf19.2875	1472549	1473534	1	1472549	1473534	1472576	1473400		orf19.10393|IPF24441.1|IPF3239.1|Contig4-2826_0004|orf6.4384|CA2472|CaO19.2875|CaO19.10393|IPF3239	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1473644	1478291	+	orf19.2873	1473644	1478291	1	1473644	1478291	1473748	1478133	TOP2	orf19.10391|IPF24459.1|IPF3245.2|Contig4-2826_0003|Contig4-3009_0024|Contig4-3009_0025|orf6.4382|CA2471|CaO19.2873|CaO19.10391	DNA topoisomerase II; catalyzes ATP-dependent DNA relaxation and decatenation in vitro; Y842 predicted to be catalytic; functional homolog of S. cerevisiae Top2p; sensitive to amsacrine or doxorubicin; farnesol-upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1478173	1480514	-	orf19.2871	1478173	1480514	1	1480514	1478173	1480285	1478360	SDH12	orf19.10389|IPF3247.1|IPF28944.1|Contig4-3009_0023|orf6.4380|CA2470|SDHA|SDH3|SDH1|CaO19.2871|CaO19.10389	Protein with similarity to S. cerevisiae SDH1, which is a flavoprotein subunit of succinate dehydrogenase; soluble protein in hyphae; macrophage-downregulated protein level; downregulated by Efg1p; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1481449	1481901	-	orf19.2870	1481449	1481901	1	1481901	1481449	1481880	1481449		orf19.10388|IPF24461.1|IPF3250.2|Contig4-3009_0020|orf6.1538|orf6.4379|CA0546|LDG11|CaO19.2870|IPF3250	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr4	1482174	1482683	-	orf19.2869	1482174	1482683	1	1482683	1482174	1482683	1482174			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1483021	1483503	-	orf19.2868	1483021	1483503	1	1483503	1483021	1483503	1483021		orf19.10386|IPF24452.1|IPF3252.2|Contig4-3009_0017|orf6.1536|CA0544|CaO19.2868|LDG9|CaO19.10386|IPF3252	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1484375	1486646	+	orf19.2867	1484375	1486646	1	1484375	1486646	1484418	1486436		orf19.10385|IPF24421.1|IPF3255.2|Contig4-3009_0013|Contig4-3009_0014|orf6.1535|CA0543|CaO19.2867|VPS5|CaO19.10385|IPF3255	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1486533	1486778	-	ntar_835	1486533	1486778	1	1486778	1486533	1486735	1486589			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1487112	1488662	+	orf19.2866	1487112	1488662	1	1487112	1488662	1487112	1488662		orf19.10655|orf19.10384|IPF24444.1|IPF18945.2|IPF24207.1|IPF5810.3|CA6318|CA6311|orf19.3143|Cirt21.5eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1488741	1489519	-	ntar_836	1488741	1489519	1	1489519	1488741					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1488795	1489286	+	ntar_837	1488795	1489286	1	1488795	1489286					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1489615	1491010	+	orf19.3142	1489615	1491010	1	1489615	1491010	1489718	1490917		orf19.10654|IPF24177.1|IPF3259.2|Contig4-3009_0008|orf6.1853|CA0742|CaO19.10654|CaO19.3142|IPF3259	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1490969	1493862	-	orf19.3141	1490969	1493862	1	1493862	1490969	1493787	1491067		orf19.10653|IPF18322.2|IPF3261.2|Contig4-3009_0007|orf6.1852|orf6.5878|CA0741|SMY2|CaO19.3141|IPF3261	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1493995	1494419	+	ntar_838	1493995	1494419	1	1493995	1494419					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1494344	1495052	-	orf19.3140.1	1494344	1495052	2	1495052|1494841	1494910|1494344	1494912	1494395		IPF24216.1|IPF3262.2|Contig4-1623_0002|Contig4-3009_0006|orf6.1569|CA0740|UMP1|IPF3262.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1495160	1495489	+	orf19.3140	1495160	1495489	1	1495160	1495489	1495160	1495489		IPF28894.1|Contig4-1623_0001|orf6.1851|CaO19.3140	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1495702	1497057	+	orf19.3139	1495702	1497057	1	1495702	1497057	1495860	1496978		orf19.10651|IPF3264.2|IPF18884.2|IPF3264|Contig4-3009_0005|orf6.1850|orf6.5876|CA3571|CaO19.3139	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon benomyl treatment; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1497883	1499075	+	orf19.3138	1497883	1499075	1	1497883	1499075	1497965	1498915	NOP1	orf19.10650|IPF24186.1|IPF3267.2|Contig4-3009_0002|orf6.5875|CA3570|CaO19.3138|CaO19.10650	Nucleolar protein; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1498957	1500697	-	orf19.3136	1498957	1500697	1	1500697	1498957	1500473	1499097		orf19.10648|IPF24174.1|IPF3268.1|Contig4-3009_0001|orf6.5873|CA3569|CaO19.3136|USP1|CaO19.10648|IPF3268	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1500738	1502679	-	orf19.3135	1500738	1502679	1	1502679	1500738	1502679	1500898		orf19.10647|IPF24165.1|IPF7802.2|Contig4-2579_0009|Contig4-3009_0026|orf6.5872|CA3568|CaO19.10647|CaO19.3135|IPF7804.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1502722	1503162	-	orf19.3134	1502722	1503162	1	1503162	1502722	1503162	1502722		orf19.10646|IPF24213.1|IPF7804.1|Contig4-2579_0007|orf6.5871|CA3567|CaO19.3134|CaO19.10646|IPF7804.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1506991	1509409	+	orf19.3133	1506991	1509409	1	1506991	1509409	1507275	1509227	GUT2	orf19.10645|IPF24162.1|IPF7812.2|Contig4-2291_0005|orf6.5870|CA3566|CaO19.3133|CaO19.10645	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1509602	1511792	+	orf19.3132	1509602	1511792	1	1509602	1511792	1509771	1511651		orf19.10644|IPF24161.1|IPF7815.2|Contig4-2291_0002|Contig4-2291_0003|Contig4-2291_0004|orf6.5869|CA3565|CaO19.10644|MSC2|CaO19.3132	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1511689	1513212	-	orf19.3131	1511689	1513212	1	1513212	1511689	1513065	1511767	OYE32	orf19.10643|IPF7817|IPF24176.1|IPF7817.2|Contig4-2291_0001|orf6.5868|CA3564|OYE99|CaO19.3131|CaO19.10643	Protein of NAD(P)H oxidoreductase family; induced by nitric oxide, amphotericin B, oxidative stress (via Cap1p); increased transcription associated with MDR1 overexpression or benomyl treatment; macrophage-downregulated protein abundance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1513816	1514817	+	orf19.3130	1513816	1514817	1	1513816	1514817	1513945	1514766		orf19.10642|IPF24185.1|IPF7819.2|orf6.5867|CA3563|CaO19.3130|CaO19.10642|IPF7819	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1514920	1516370	+	orf19.3129	1514920	1516370	1	1514920	1516370	1514961	1516337		orf19.10641|IPF24175.1|IPF7823.2|Contig4-2672_0010|orf6.5866|CA3562|RVB1|CaO19.10641|CaO19.3129|IPF7823	Predicted ORF in Assemblies 19, 20 and 21; heterozygous null mutant displays sensitivity to virgineone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1516325	1518469	-	orf19.3128	1516325	1518469	1	1518469	1516325	1518395	1516473		orf19.10640|IPF24164.1|IPF10610.2|Contig4-2672_0008|Contig4-2672_0009|orf6.5865|CA3561|CaO19.3128|SLY1|CaO19.10640	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1518656	1522389	-	orf19.3127	1518656	1522389	1	1522389	1518656	1520318	1519161	CZF1	orf19.10639|ZNF1|IPF24182.1|IPF10612.2|Contig4-2672_0006|orf6.5864|CA3560|CaO19.3127|CaO19.10639	Transcriptional regulator of white-opaque switching frequency; hyphal growth regulator; has C-terminal zinc finger and central Glu-rich region; expression in S. cerevisiae causes dominant-negative inhibition of pheromone response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1527834	1529657	-	orf19.3126	1527834	1529657	1	1529657	1527834	1529615	1527936	CCT6	orf19.10638|IPF24168.1|IPF14978.2|orf6.6919|CA4385|CaO19.10638|CaO19.3126	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1529748	1531068	+	orf19.3125	1529748	1531068	1	1529748	1531068	1529815	1530591		orf19.10637|IPF12412|IPF24188.1|IPF12412.2|orf6.6920|CA4386|CaO19.3125|CaO19.10637	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1530400	1531837	-	orf19.3124	1530400	1531837	1	1531837	1530400	1531744	1530629		orf19.10636|IPF24183.1|IPF12414.2|Contig4-2435_0009|orf6.6921|CA4387|CaO19.10636|MAP1|CaO19.3124	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1531857	1532697	-	orf19.3123.2	1531857	1532697	4	1532697|1532489|1532386|1532204	1532560|1532453|1532272|1531857	1532638	1531992		IPF24159.1|IPF12416.1|CA4388|IPF12416.3f|IPF12416.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1532828	1534187	+	orf19.3123	1532828	1534187	1	1532828	1534187	1532862	1534154	RPT5	orf19.10635|IPF24172.1|IPF12419.1|Contig4-2435_0006|orf6.6922|CA4389|CaO19.3123|CaO19.10635	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p and Mig1p; regulated by Gcn2p and Gcn4p; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1534164	1534645	-	orf19.3122.2	1534164	1534645	1	1534645	1534164	1534528	1534247		IPF24226.1|IPF12420.1|Contig4-2435_0005|CA4390|HOD1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1535386	1536752	+	orf19.3122	1535386	1536752	1	1535386	1536752	1535519	1536700	ARR3	orf19.10634|IPF24180.1|IPF12422.2|Contig4-2435_0003|orf6.6923|CA4391|CaO19.10634|CaO19.3122	Protein not essential for viability; similar to S. cerevisiae Arr3p, which is an arsenite transporter of the plasma membrane required for resistance to arsenic compounds; benomyl-induced; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1537009	1537746	+	orf19.3121	1537009	1537746	1	1537009	1537746	1537009	1537746	GST1	orf19.10633|IPF24190.1|IPF12303.2|Contig4-2438_0010|orf6.6924|CA4392|CaO19.10633|CaO19.3121|IPF12303	Predicted ORF in Assemblies 19, 20 and 21; upregulated in the presence of human neutrophils; expression is regulated upon white-opaque switching; increased transcription is observed upon benomyl treatment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1538237	1539976	+	orf19.3120	1538237	1539976	1	1538237	1539976	1538237	1539976		orf19.10632|IPF12299.2|IPF12300.1|Contig4-2438_0009|orf6.6925|CA4393|CaO19.10632|CaO19.3120|IPF12300	[NOT TRANSCRIBED?] Putative PDR-subfamily ABC transporter (half-size); similar to WHITE subfamily proteins; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2; induced by nitric oxide [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1540131	1540574	-	orf19.3117	1540131	1540574	1	1540574	1540131	1540574	1540131	CSA2	orf19.10631|IPF24214.1|IPF12297.1|Contig4-2438_0005|Contig4-2438_0006|Contig4-2438_0007|orf6.6928|orf6.6926|CA4394|orf19.3119|CaO19.10629|CRW1|CaO19.3117|IPF12297	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; downregulated by Rim101p at pH 8; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg; induced by ketoconazole and nitric oxide [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1541000	1542287	-	orf19.3116	1541000	1542287	1	1542287	1541000	1542161	1541439	EXM2	orf19.10628|IPF24191.1|IPF12295.1|Contig4-2438_0002|orf6.6929|CA4395|CaO19.3116|LUC7|CaO19.10628	Decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1542380	1543771	-	orf19.3115	1542380	1543771	1	1543771	1542380	1543724	1542558		orf19.10627|IPF24181.1|IPF12294.2|Contig4-2438_0013|orf6.6930|CA4396|CaO19.3115|CaO19.10627|IPF12294	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1543852	1544753	+	orf19.3114	1543852	1544753	1	1543852	1544753	1543882	1544625		orf19.10626|IPF24189.1|IPF14369.2|Contig4-2739_0005|orf6.6931|CA4397|CaO19.10626|CaO19.3114|IPF14369	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1544757	1545407	+	orf19.3113	1544757	1545407	1	1544757	1545407	1544911	1545339		orf19.10625|IPF24211.1|IPF14368.2|Contig4-2739_0004|orf6.6932|CaO19.3113|CaO19.10625	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1545396	1546802	-	orf19.3112	1545396	1546802	1	1546802	1545396	1546802	1545396	ZRT1	orf19.10624|IPF24173.1|IPF14367.2|Contig4-2739_0003|orf6.6933|CA4398|CaO19.10624|CaO19.3112	Protein described as zinc transporter; hyphal- and macrophage-induced; alkaline upregulated by Rim101p; induced upon adherence to polystyrene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1547311	1548210	+	orf19.3111	1547311	1548210	1	1547311	1548210	1547311	1548210	PRA1	orf19.10623|orf6.6934|FBP1|mp58|IPF8782.2|IPF14364.1|Contig4-2739_0001|orf6.60|CA4399|CaO19.3111	Cell surface protein, enriched at hyphal tips; also released extracellularly; binds to host complement regulators, integrin alphaMbeta2; mediates leukocyte adhesion; immunogenic in mouse; produced at ambient pH; Rim101p induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1548566	1550906	+	orf19.3110	1548566	1550906	1	1548566	1550906	1548772	1550850		orf19.10622|IPF14362.3|IPF8781.2|Contig4-2940_0015|orf6.61|orf6.6935|CA4400|MNN46|CaO19.3110|IPF14362	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1550992	1551618	+	orf19.3109	1550992	1551618	1	1550992	1551618	1550992	1551618		orf19.10621|IPF24194.1|IPF8780.1|Contig4-2940_0014|orf6.6936|CA4401|CaO19.10621|CaO19.3109|IPF8780	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr4	1551129	1551368	-	ntar_839	1551129	1551368	1	1551368	1551129	1551260	1551129			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1551493	1552374	-	orf19.3108	1551493	1552374	1	1552374	1551493	1552167	1551640		orf19.10620|IPF24204.1|IPF8778.1|Contig4-2940_0013|orf6.6937|CA4402|CaO19.10620|MGT1|CaO19.3108	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1552441	1553152	-	orf19.3107	1552441	1553152	1	1553152	1552441	1553136	1552690		orf19.10619|IPF24210.1|IPF8777.2|orf6.6938|CA4403|CaO19.10619|CaO19.3107|IPF8777	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr4	1553830	1554799	+	orf19.3106	1553830	1554799	1	1553830	1554799	1553891	1554649	MET16	orf19.10618|IPF24192.1|IPF8775.2|Contig4-2940_0008|orf6.6939|CA4404|CaO19.10618|CaO19.3106	Putative 3'-phosphoadenylsulfate reductase; predicted enzyme of sulfur amino acid metabolism; reports differ on regulation during biofilm formation; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1554803	1556388	+	orf19.3105	1554803	1556388	1	1554803	1556388	1554827	1556386		orf19.10617|IPF24169.1|IPF8773.2|Contig4-2940_0007|orf6.6940|CA4405|CaO19.3105|TRI4|CaO19.10617|IPF8773	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1556212	1556366	-	ntar_840	1556212	1556366	1	1556366	1556212					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1556586	1557821	+	orf19.3104	1556586	1557821	1	1556586	1557821	1556725	1557615	YDC1	orf19.10616|IPF24187.1|IPF8772.2|Contig4-2940_0005|orf6.6941|CA4406|CaO19.3104|CaO19.10616	Predicted ORF in Assemblies 19, 20 and 21; shows Mob2p-dependent hyphal regulation; transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1557938	1562402	+	orf19.3103	1557938	1562402	1	1557938	1562402	1557984	1562330		orf19.10615|IPF24220.1|IPF13155.2|Contig4-2940_0002|Contig4-2940_0003|orf6.6942|CA4407|CaO19.3103|RPO3|RPO31	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1562446	1563198	+	orf19.3102	1562446	1563198	1	1562446	1563198	1562457	1563098	CTA6	orf19.10614|IPF17498.2|IPF13152.2|Contig4-2121_0001|Contig4-2940_0001|orf6.148|orf6.6943|CA4408|CaO19.3102|CTA6.3	Predicted ORF in Assemblies 19, 20 and 21; activates transcription in 1-hybrid assay in S. cerevisiae; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1563096	1566351	-	orf19.3100	1563096	1566351	1	1566351	1563096	1566260	1563144		orf19.10613|IPF17497.2|IPF13151.2|Contig4-2121_0002|Contig4-2121_0003|Contig4-2121_0004|orf6.149|orf6.415|orf6.6945|orf6.414|CA4409|CaO19.3100|IPF13151	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1566483	1568069	-	orf19.3099	1566483	1568069	1	1568069	1566483	1567955	1566846	TRP4	orf19.10611|IPF19292.2|IPF1754.2|Contig4-2877_0001|orf6.416|orf6.6946|CA4410|CaO19.3099	Predicted enzyme of amino acid biosynthesis; upregulated in biofilm; regulated by Gcn2p and Gcn4p; S. cerevisiae ortholog is Gcn4p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1568149	1574169	-	orf19.3098	1568149	1574169	1	1574169	1568149	1574169	1568206		orf19.10610|IPF24199.1|IPF1751.2|Contig4-2877_0004|orf6.6947|CA4411|CaO19.10610|BRR2|CaO19.3098	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1568220	1568620	+	ntar_841	1568220	1568620	1	1568220	1568620					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1574250	1575569	-	orf19.3097	1574250	1575569	1	1575569	1574250	1575542	1574337	PDA1	orf19.10608|orf19.10609|IPF24178.1|IPF1749.1|Contig4-2877_0005|Contig4-2877_0006|orf6.6949|orf6.6948|CA4412|orf19.3096|CaO19.3097|CaO19.10609	Protein described as similar to alpha chain of pyruvate dehydrogenase; fluconazole-induced; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1575762	1578386	-	orf19.3093	1575762	1578386	1	1578386	1575762	1578386	1575765	MSH2	orf19.10605|IPF24154.1|IPF1746.1|Contig4-2877_0007|orf6.6952|CA4413|CaO19.10605|CaO19.3093	Protein described as DNA mismatch repair factor; transcription is regulated by Nrg1p; flucytosine repressed; RNA abundance regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1578601	1583031	+	orf19.3091	1578601	1583031	1	1578601	1583031	1578626	1582930		orf19.10602|orf19.10603|IPF24217.1|IPF1742.3|Contig4-2877_0008|Contig4-2877_0009|Contig4-2877_0011|Contig4-2877_0013|orf6.3731|orf6.3730|orf6.6954|CA4414|orf19.3090|CaO19.3091|IPF1742|CA2008|IPF1742.3f.eoc|IPF1740.2	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1583175	1583849	+	orf19.3089	1583175	1583849	1	1583175	1583849	1583217	1583801		orf19.10601|IPF24196.1|IPF1732.1|Contig4-2877_0015|orf6.3732|CA2009|CaO19.10601|CaO19.3089|IPF1732	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1584008	1584576	+	orf19.3088	1584008	1584576	1	1584008	1584576	1584008	1584547		orf19.10600|IPF24201.1|IPF1731.2|orf6.3733|CA2010|CaO19.3088|CaO19.10600|IPF1731	Putative transcription factor with bZIP DNA-binding motif; induced upon biofilm formation; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1584434	1585135	-	orf19.3087.1	1584434	1585135	1	1585135	1584434	1584817	1584527			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1584645	1584888	+	orf19.3087.2	1584645	1584888	1	1584645	1584888	1584675	1584854			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1585505	1586140	+	orf19.3087	1585505	1586140	1	1585505	1586140	1585505	1586086	UBI3	orf19.10599|RPS31|IPF24198.1|IPF1727.2|Contig4-2594_0005|orf6.3734|CA2011|CaO19.3087|CaO19.10599	Fusion of ubiquitin with the S34 protein of the small ribosomal subunit; mRNA decreases upon heat shock, appears to be degraded; functional homolog of S. cerevisiae RPS31 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1586257	1588737	+	orf19.3086	1586257	1588737	1	1586257	1588737	1586265	1588622		orf19.10598|IPF24157.1|IPF1725.2|Contig4-2594_0007|Contig4-2594_0009|orf6.3735|CA2012|CaO19.10598|SEC10|CaO19.3086	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1588591	1589827	-	orf19.3083	1588591	1589827	1	1589827	1588591	1589817	1588615		orf19.10595|IPF24179.1|IPF1720.2|Contig4-2594_0010|orf6.3738|CA2013|CDC1|CaO19.3083|CaO19.10595	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1589876	1590891	+	orf19.3084	1589876	1590891	1	1589876	1590891	1589891	1590772		orf19.10596|IPF24184.1|IPF1719.2|Contig4-2594_0011|orf6.3737|CaO19.10596|CaO19.3084	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1590674	1594024	-	orf19.3080	1590674	1594024	1	1594024	1590674	1593905	1590765		IPF1717.2|IPF18927.2|Contig4-2594_0013|orf6.1637|orf6.3741|CA2014|CaO19.3080|IPF1717.3f|IPF1717	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1594473	1596561	-	orf19.3077	1594473	1596561	1	1596561	1594473	1596561	1594501	VID21	orf19.10590|IPF18566.2|IPF1713.2|orf6.1634|orf6.3743|orf6.3744|CA0604|CaO19.3077	Subunit of the NuA4 histone acetyltransferase complex; soluble protein in hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr4	1596720	1597190	+	orf19.3076	1596720	1597190	1	1596720	1597190	1596736	1597134		orf19.10588|IPF24209.1|IPF1709.2|orf6.1633|CA0603|CaO19.10588|CaO19.3076|IPF1709	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr4	1597337	1597996	-	orf19.3074	1597337	1597996	1	1597996	1597337	1597996	1597337	TLO10	orf19.10586|IPF24195.1|IPF1708.2|Contig4-1846_0003|orf6.1631|CA0602|CTA211|CaO19.3074|CaO19.10586|CTA22	Member of a family of telomere-proximal genes of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr4	1598558	1598857	+	ntar_842	1598558	1598857	1	1598558	1598857					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1602107	1602858	+	ntar_843	1602107	1602858	1	1602107	1602858	1602193	1602432			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr4	1603087	1603443	+	orf19.3073	1603087	1603443	1	1603087	1603443	1603087	1603443		orf19.10585|IPF24227.1|IPF16712.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	1918	2677	+	orf19.5700	1918	2677	1	1918	2677	1918	2427	TLO11	IPF5443.2|orf6.4578|CA2615|TLO11b|CaO19.5700|CTA224|CTA241.5f|CTA241.exon1	Member of a family of telomere-proximal genes of unknown function; may be spliced in vivo [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr5	3318	3872	-	ntar_844	3318	3872	1	3872	3318					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	3876	4833	+	orf19.5698	3876	4833	1	3876	4833	3999	4808		IPF5446.1|Contig4-2278_0006|orf6.4576|CA2613|CaO19.5698|MRPL1|IPF5446	Putative ribosomal protein, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	4791	6483	-	orf19.5693	4791	6483	1	6483	4791	6473	4830		IPF5450.1|Contig4-2278_0008|Contig4-2278_0009|orf6.4571|CA2612|CaO19.5693|GAA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	6406	7617	+	ntar_845	6406	7617	1	6406	7617	6406	7230			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	7081	8830	-	orf19.5692	7081	8830	1	8830	7081	8807	7209		IPF5453.1|Contig4-2927_0017|orf6.4570|CA2611|CaO19.5692|IPF5453	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	8929	10203	+	orf19.5691	8929	10203	1	8929	10203	8946	10154	CDC11	IPF5456.1|Contig4-2927_0014|orf6.4569|CA2610|CaO19.5691	Septin; required for wild-type cell and hyphal morphology, agar-invasive growth, full virulence and kidney tissue invasion in mouse, but not for kidney colonization, immunogenicity; phosphorylation is hyphal- and cell-cycle-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	10083	11107	-	orf19.5689	10083	11107	1	11107	10083	11086	10151		IPF5457.1|Contig4-2927_0013|orf6.4567|CA2609|CaO19.5689|IPF5457	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	11117	11819	-	orf19.5688	11117	11819	1	11819	11117	11819	11157		orf6.4566|CaO19.5688	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	11839	12441	-	orf19.5686	11839	12441	1	12441	11839	12441	11839		IPF5460.1|Contig4-2927_0011|orf6.4564|CaO19.5686	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	11896	12405	+	ntar_846	11896	12405	1	11896	12405	11896	12405			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	12554	14688	-	orf19.5685	12554	14688	1	14688	12554	14674	12554	THS1	IPF5462.1|Contig4-2927_0010|orf6.4563|CA2608|CaO19.5685	Putative threonyl-tRNA synthetase; transcription regulated by Mig1p and Tup1p; downregulated upon phagocytosis by murine macrophages; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	14744	15099	+	orf19.5684.1	14744	15099	1	14744	15099	14763	15059			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	15003	15478	-	orf19.5684	15003	15478	1	15478	15003	15475	15077		IPF5464.1|Contig4-2927_0007|orf6.4562|CA2607|MRPL38|CaO19.5684	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	15515	16268	-	orf19.5683	15515	16268	1	16268	15515	16255	15563		IPF5466.1|Contig4-2927_0006|orf6.4561|CA2606|CaO19.5683|IPF5466	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	16326	18056	-	orf19.5682	16326	18056	1	18056	16326	18029	16398		IPF5468.1|Contig4-2927_0004|orf6.4560|CA2605|SRP1|CaO19.5682	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	18123	18932	+	orf19.5681	18123	18932	1	18123	18932	18148	18882		IPF5469.1|Contig4-2927_0002|orf6.4559|CA2604|CaO19.5681|IPF5469	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	18999	20131	+	orf19.5680	18999	20131	1	18999	20131	19011	20093		IPF5471.1|Contig4-2927_0001|orf6.4558|CA2603|CaO19.5680|IPF5471	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	20218	23552	+	orf19.980	20218	23552	1	20218	23552	20226	23504		orf19.8595|IPF5473.1|IPF26319.1|IPF1615.2|Contig4-3103_0056|orf6.8229|orf6.4557|CA2602|CA5427|orf19.5679|IPF1615.3eoc|VIP1|CaO19.8595|CaO19.980	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	23492	29785	-	orf19.979	23492	29785	1	29785	23492	29661	23548	FAS1	orf19.8594|Contig4-3103_0003|Contig4-3103_0006|Contig4-3103_0007|Contig4-3103_0008|IPF1611.2|orf6.8228|CA5426|CaO19.8594|CaO19.979	Beta subunit of fatty-acid synthase; multifunctional enzyme; fluconazole-induced; amphotericin B, caspofungin repressed; macrophage/pseudohyphal-induced; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	30683	33146	-	orf19.978	30683	33146	1	33146	30683	32918	30720	BDF1	orf19.8593|orf6.8227|IPF26320.1|IPF1604.2|Contig4-3103_0010|Contig4-3103_0011|CA5425|CaO19.978|CaO19.8593	Putative transcription factor; downregulated upon adherence to polystyrene; reduced mRNA abundance detected in homozygous fkh2 null mutant; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	33488	33906	+	ntar_847	33488	33906	1	33488	33906	33594	33767			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	33735	36517	-	orf19.976	33735	36517	1	36517	33735	35884	33839	BRE1	orf19.8591|IPF26322.1|IPF1598.2|Contig4-3103_0012|orf6.8225|CA5424|CaO19.976|CaO19.8591|IPF1598	Putative transcription factor with C3HC4 zinc finger DNA-binding motif; similar to S. cerevisiae Bre1p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	36656	39407	+	orf19.974	36656	39407	1	36656	39407	36656	39271	ROT2	orf19.8589|GLS2|IPF26310.1|IPF1591.1|Contig4-3103_0013|orf6.8223|CA5423|CaO19.974|CaO19.8589	Alpha-glucosidase II, catalytic subunit, required for N-linked protein glycosylation and normal cell wall synthesis; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	38732	40161	-	orf19.972	38732	40161	1	40161	38732	40126	39266		orf19.8587|IPF26339.1|IPF1588.1|Contig4-3103_0014|orf6.8221|CA5422|CaO19.972|SLX1|CaO19.8587|IPF1588	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	40779	42793	+	orf19.971	40779	42793	1	40779	42793	40891	42570	SKN7	orf19.8586|IPF26326.1|IPF1586.1|Contig4-3103_0018|orf6.8220|CA5421|CaO19.8586|CaO19.971	Putative homolog of S. cerevisiae Skn7p, which is predicted to be a response regulator protein in a phosphorelay signal transduction pathway [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	42486	43255	-	orf19.970	42486	43255	1	43255	42486	43190	42567		orf19.8585|IPF26344.1|IPF1583.1|Contig4-3103_0019|orf6.8219|CA5420|CaO19.8585|CaO19.970|IPF1583	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	43370	44721	+	orf19.969	43370	44721	1	43370	44721	43421	44635		orf19.8584|PRS1|IPF26333.1|IPF1582.1|Contig4-3103_0021|orf6.8218|CA5419|CaO19.969|PRS11|CaO19.8584	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	45796	46373	+	orf19.968	45796	46373	1	45796	46373	45823	46218	PGA14	orf19.8583|IPF26359.1|IPF1580.1|Contig4-3103_0023|orf6.8217|CA5418|CaO19.968|CaO19.8583|IPF1580	Putative GPI-anchored protein of unknown function; induced during cell wall regeneration; regulated by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	46334	47392	-	orf19.967	46334	47392	1	47392	46334	47366	46404		orf19.8582|IPF26338.1|IPF1578.1|Contig4-3103_0024|orf6.8216|CA5417|NUC1|CaO19.8582|CaO19.967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	47730	48948	+	orf19.966	47730	48948	1	47730	48948	47854	48873		orf19.8581|IPF26336.1|IPF1576.1|Contig4-3103_0028|orf6.8215|CA5416|CaO19.966|DUS4|CaO19.8581|IPF1576	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	48787	53041	-	orf19.964	48787	53041	1	53041	48787	53010	48904	SMC4	orf19.8579|IPF26364.1|IPF1574.1|Contig4-3103_0030|orf6.8213|CA5415|CaO19.964|CaO19.8579	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	53141	53846	-	orf19.962	53141	53846	1	53846	53141	53780	53247		orf19.8577|IPF26352.1|IPF1568.1|Contig4-3103_0031|Contig4-3103_0032|orf6.8211|CA5414|CBF5|CaO19.962|CaO19.8577|IPF1568	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	53981	54535	+	orf19.961.2	53981	54535	1	53981	54535	54029	54322		IPF26366.1|IPF1567.1|Contig4-3103_0033|CA5413|IPF1567	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	54335	63318	-	orf19.956	54335	63318	1	63318	54335	63318	54415		orf19.8571|IPF26341.1|IPF1566.1|Contig4-3103_0034|orf6.8205|CA5412|CSF1|CaO19.956|CaO19.8571|IPF1566	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr5	63649	64670	+	orf19.955	63649	64670	1	63649	64670	63667	64644		orf19.8570|IPF26337.1|IPF1558.1|Contig4-3103_0035|orf6.8204|CA5411|CaO19.8570|CaO19.955|IPF1558	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	64613	66202	-	orf19.954	64613	66202	1	66202	64613	66052	64733		orf19.8569|IPF26331.1|IPF1557.1|Contig4-3103_0037|orf6.8203|CA5410|XDJ1|CaO19.954|CaO19.8569|IPF1557	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	66383	66464	-	ts(cag)1	66383	66464	1	66464	66383				tS(CAG)1.2	tRNA-Ser predicted by tRNAscan-SE; responsible for the decoding of CUG as Ser, rather than the usual Leu; more similar to other Ser tRNAs than to Leu tRNAs in hemiascomycetes; has atypical G at position 33 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	67544	68619	+	orf19.953.1	67544	68619	3	67544|67736|67850	67607|67746|68619	67605	68261	COF1	IPF26361.1|IPF1554.1|Contig4-3103_0038|CA5409|COF1.3f	Protein described as cofilin; macrophage-induced protein; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	69038	71428	+	orf19.952	69038	71428	1	69038	71428	69038	71404		orf19.8567|IPF26314.1|IPF1551.1|Contig4-3103_0039|orf6.8201|CA5408|CaO19.952|CaO19.8567|IPF1551	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr5	71401	72420	-	orf19.951	71401	72420	1	72420	71401	72101	71613		orf19.8566|IPF26348.1|IPF1548.1|Contig4-3103_0040|orf6.8200|CA5407|CaO19.8566|CaO19.951|IPF1548	Predicted ORF in Assemblies 19, 20 and 21; transcription downregulated upon yeast-hyphal switch; fluconazole-induced; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	73190	73960	+	ntar_848	73190	73960	1	73190	73960					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	73517	73660	-	ntar_849	73517	73660	1	73660	73517					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	73807	76764	-	orf19.949	73807	76764	1	76764	73807	76453	74018		orf19.8564|IPF26315.1|IPF1547.1|Contig4-3103_0044|orf6.8198|CA5406|TPM1|CaO19.949|CaO19.8564|IPF1547	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	77014	77597	+	orf19.948	77014	77597	1	77014	77597	77014	77355		orf19.8563|IPF26360.1|IPF29626.1|Contig4-3103_0045|orf6.8197|CaO19.8563|CaO19.948	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr5	77391	78316	-	orf19.947	77391	78316	1	78316	77391	78136	77777	MRP17	orf19.8562|IPF26371.1|IPF1544.1|Contig4-3103_0047|orf6.8196|CA5405|CaO19.947|CaO19.8562	Predicted mitochondrial ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	78806	79521	+	orf19.946	78806	79521	1	78806	79521	78890	79492	MET14	orf19.8561|IPF26346.1|IPF1543.1|Contig4-3103_0048|orf6.8195|CA5404|CaO19.946|CaO19.8561	Predicted ORF in Assemblies 19, 20 and 21; predicted role in sulfur metabolism; induced upon biofilm formation; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	79413	80287	-	orf19.945	79413	80287	1	80287	79413	80225	79518	VPS2	orf19.8560|IPF26342.1|IPF1542.1|Contig4-3103_0049|orf6.8194|CA5403|CaO19.8560|DID4|CaO19.945|IPF1542	Protein similar to S. cerevisiae Did4p/Vps2p, which is a member of the ESCRT III complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	80435	80670	+	ntar_850	80435	80670	1	80435	80670					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	80438	81624	-	orf19.944	80438	81624	2	81624|81503	81576|80438	81598	80483	IFG3	orf19.8559|IPF26335.1|IPF1541.1|Contig4-3103_0050|orf6.8193|CA5402|IFG3.3	Putative D-amino acid oxidase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	80921	81121	+	ntar_851	80921	81121	1	80921	81121					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	81964	84097	-	orf19.943	81964	84097	1	84097	81964	83979	82117	FET33	orf19.8558|IPF26325.1|IPF1540.2|Contig4-3103_0051|Contig4-3103_0052|orf6.8192|CA5401|FET397|CaO19.8558|CaO19.943|FET35.3	Putative multicopper ferro-O2-oxidoreductase; downregulated in core caspofungin response; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	84369	86237	-	orf19.942	84369	86237	1	86237	84369	86237	84369	KRE62	orf19.8557|IPF26313.1|IPF26324.1|IPF1539.1|IPF1538.2|Contig4-3103_0054|orf6.8191|KRE62.5f|KRE62.3f|orf19.942.1|CA5399|CA5400	[NOT TRANSCRIBED?] Protein described as subunit of glucan synthase; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	86896	88374	-	orf19.941	86896	88374	1	88374	86896	88250	87345	SEC14	orf19.8556|IPF26340.1|IPF9666.1|orf6.8190|CA5398|CaO19.941|CaO19.8556	Essential protein; functional homolog of S. cerevisiae Sec14p, which is a Golgi phosphatidylinositol/phosphatidylcholine transfer protein that regulates choline-phosphate cytidyltransferase and thereby affects secretion; biofilm-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	89742	93931	-	orf19.940	89742	93931	1	93931	89742	93594	89881	BUD2	orf19.8555|orf6.8189|IPF26369.1|IPF9663.2|Contig4-2510_0003|CA5397|CaO19.940|CaO19.8555|IPF9663	GTPase activating protein (GAP) for Rsr1p; negative regulator of filament branching, acts in hyphal growth guidance; required for wild-type budding pattern; expression greater in low iron; regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	94220	94405	+	ntar_852	94220	94405	1	94220	94405	94239	94394			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	94236	94392	-	ntar_853	94236	94392	1	94392	94236					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	94623	98212	+	orf19.939	94623	98212	1	94623	98212	95043	98102	NAM7	orf19.8554|IPF26374.1|IPF9662.2|Contig4-2612_0009|orf6.8188|CA5396|CaO19.939|CaO19.8554	Putative role in nonsense-mediated mRNA decay; similar to S. cerevisiae Nam7p; gene induced by ciclopirox olamine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	103064	104752	+	orf19.938	103064	104752	1	103064	104752	103156	104601		orf19.8553|IPF26329.1|IPF9401.1|Contig4-2726_0005|orf6.8187|CA5395|CaO19.8553|Gal11|CaO19.938|IPF9401	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	105031	105504	+	orf19.937	105031	105504	1	105031	105504	105031	105504			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	105170	107921	-	ntar_854	105170	107921	1	107921	105170	106663	106487			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	105626	107950	+	orf19.936	105626	107950	1	105626	107950	105626	107950		orf19.8551|IPF26316.1|IPF9398.1|Contig4-2726_0007|Contig4-2726_0009|orf6.8185|CA5393|ASM2|CaO19.8551|CaO19.936|IPF9398	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	109765	111126	-	orf19.935	109765	111126	1	111126	109765	110891	109830	AGA1	orf19.8550|IPF26334.1|IPF10571.2|Contig4-2870_0012|orf6.8184|CA5392|CaO19.935|CaO19.8550|IPF10571	Protein with some similarity to agglutinin subunit; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	121163	121965	-	orf19.934	121163	121965	1	121965	121163	121859	121536		orf19.8549|IPF6528.1|Contig4-2870_0002|orf6.8183|orf6.1317|CA5391|orf19.2224|CaO19.8549|CaO19.934|IPF18109|IPF18109.1	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 and merged with orf19.2224, based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	122118	123019	+	orf19.933	122118	123019	1	122118	123019	122294	122803		orf19.8548|IPF6529.2|IPF26349.1|IPF29623.1|Contig4-2870_0001|orf6.8182|orf6.1318|CA0417|orf19.2225|UBC13|CaO19.933|CaO19.8548	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.2225 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	124142	124289	+	ntar_855	124142	124289	1	124142	124289					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	124819	130402	+	orf19.932	124819	130402	1	124819	130402	125118	130268		orf19.8547|IPF18993.1|IPF26353.1|IPF6532.2|Contig4-2777_0010|orf6.8181|orf6.1319|CA5390|orf19.2226|DRS24|CaO19.932|DNF2|CaO19.8547	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.2226 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	130581	133041	+	orf19.931	130581	133041	1	130581	133041	130828	132912		orf19.8546|IPF26321.1|IPF6533.2|Contig4-2777_0005|Contig4-2777_0008|orf6.8180|CA5389|CaO19.8546|LPF6|CaO19.931|IFA13	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	134669	135746	+	orf19.930	134669	135746	1	134669	135746	134740	135645	PET9	orf19.8545|IPF6536.2|IPF29622.1|Contig4-2777_0002|orf6.8179|CA5388|CaO19.930|CaO19.8545	Protein involved in ATP biosynthesis; identified in detergent-resistant membrane fraction (possible lipid raft component); 3 predicted transmembrane helices; flucytosine induced; ketoconazole-induced; downregulated by Efg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	137597	138904	-	orf19.929	137597	138904	1	138904	137597	138904	137597		orf19.8544|IPF26332.1|IPF8420.2|Contig4-2136_0001|orf6.2859|CA1381|CaO19.929|CaO19.8544|IPF8420	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr5	139365	141500	-	orf19.928	139365	141500	1	141500	139365	141377	139515		orf19.8543|IPF26323.1|IPF8421.2|Contig4-2136_0006|orf6.2860|CA1382|CaO19.928|CaO19.8543|IPF8421	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	141581	142402	+	orf19.927	141581	142402	1	141581	142402	141659	142270		orf19.8542|IPF26343.1|IPF8422.2|Contig4-2136_0007|orf6.2861|CA1383|CaO19.8542|CaO19.927|IPF8422	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	142185	144477	-	orf19.926	142185	144477	1	144477	142185	144424	142325	EXO1	orf19.8541|IPF26317.1|IPF8423.2|Contig4-2692_0013|orf6.2862|CA1384|CaO19.8541|CaO19.926|IPF8423	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	144701	146384	-	orf19.925	144701	146384	1	146384	144701	146292	144766		orf19.8540|IPF26328.1|IPF8424.1|Contig4-2692_0012|orf6.2863|CA1385|CaO19.8540|CaO19.925|IPF8424	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	146570	147836	-	orf19.923	146570	147836	1	147836	146570	147787	146714	THR1	orf19.8539|IPF19445.1|IPF8426.1|Contig4-2692_0010|orf6.2865|orf6.99|CA1386|CaO19.923	Putative homoserine kinase; fungal-specific (no human or murine homolog); transcription is regulated by Tup1p; amphotericin B repressed; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	147987	149835	-	orf19.922	147987	149835	1	149835	147987	149706	148120	ERG11	orf19.8538|ERG16|CYP51|P45014DM|orf6.98|orf6.1245|L1A1|IPF19860.2|IPF8427.2|Contig4-2692_0009|orf6.2866|CA1387|CaO19.922	Lanosterol 14-alpha-demethylase, member of cytochrome P450 family that functions in ergosterol biosynthesis; target of azole antifungals; may contribute to drug resistance; azole- or biofilm-induced; subject to hypoxic regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	150338	151105	+	ntar_856	150338	151105	1	150338	151105	150338	150583			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	151085	153342	-	orf19.921	151085	153342	1	153342	151085	153233	151176		orf19.8536|IPF16514.3|Contig4-2692_0006|orf6.1243|orf6.2867|CA1388|CaO19.921|IPF16514|IPF16514.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	153473	154142	-	ntar_857	153473	154142	1	154142	153473					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	156769	158474	+	orf19.920	156769	158474	1	156769	158474	156807	158162	RMT2	orf19.8535|IPF19012.2|IPF16809.2|Contig4-2402_0003|orf6.1242|orf6.571|CA0119|RMT2.5eoc	Minor protein arginine methyltransferases (PRMT) involved in methylation of arginine residues [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	157377	159369	-	orf19.567	157377	159369	2	159369|159251	159312|157377	159330	158188	TFB3	orf19.8198|IPF18427.2|IPF11571.2|Contig4-2182_0001|orf6.372|orf6.4717|CA2711|CaO19.567|IPF18427.1	Putative transcription factor with C3HC4 zinc finger DNA-binding motif; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	159434	161141	-	orf19.568	159434	161141	1	161141	159434	160775	159627	SPE2	orf19.8199|IPF11572.1|IPF19320.2|Contig4-2182_0003|orf6.371|orf6.4718|CA2712|CaO19.568	Predicted ORF in Assemblies 19, 20 and 21; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	164521	166665	+	orf19.570	164521	166665	1	164521	166665	164521	166665	IFF8	orf19.8201|Contig4-2860_0006|IPF26693.1|IPF11578.2|orf6.4720|CA2713|CaO19.8201|CaO19.570	Putative GPI-anchored protein of unknown function; decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr5	171037	175167	+	orf19.575	171037	175167	1	171037	175167	171037	174786	HYR3	orf19.8206|IFF2|orf6.4725|IPF26737.1|IPF7360.1|Contig4-2857_0004|CA2714|CaO19.575|CaO19.8206	Putative GPI-anchored protein of unknown function; similar to Hyr1p; transcriptionally regulated by iron; expression greater in high iron; clade-specific repeat variation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	175114	175351	-	ntar_858	175114	175351	1	175351	175114					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	175472	176156	+	orf19.576	175472	176156	1	175472	176156	175559	176047	CTF8	orf19.8207|IPF26720.1|IPF7354.1|Contig4-2857_0006|orf6.4726|CA2715|CaO19.8207|CaO19.576	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	175995	178281	-	orf19.577	175995	178281	1	178281	175995	178140	176158		orf19.8208|IPF26695.1|IPF7353.2|Contig4-2857_0007|orf6.4727|CA2716|CaO19.577|CaO19.8208|IPF7353	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	179258	179603	-	ntar_859	179258	179603	1	179603	179258					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	179811	181962	+	orf19.578	179811	181962	1	179811	181962	180051	181865		orf19.8209|IPF7351.2|IPF29765.1|Contig4-2857_0008|orf6.467|orf6.4728|CA2717|MSB3|CaO19.578	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	181868	184412	-	orf19.579	181868	184412	1	184412	181868	184282	181916	FOL1	orf19.8210|IPF6397.3|IPF7349.2|Contig4-2857_0009|orf6.1108|orf6.466|orf6.4729|CA0088|CaO19.579|IPF7349	Putative dihydroneopterin aldolase (dihydro-6-hydroxymethylpterin pyrophosphokinase); fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	184565	185903	-	orf19.580	184565	185903	1	185903	184565	185859	184672		orf19.8211|IPF6396|IPF6396.2|IPF7348.3|Contig4-2778_0001|orf6.1109|orf6.465|CA0312|CaO19.580|CaO19.8211	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	185998	188909	-	orf19.581	185998	188909	1	188909	185998	188241	186145		orf19.8214|IPF19045.1|IPF6394.1|Contig4-2778_0002|orf6.1110|orf6.1112|orf6.5699|CA3436|CaO19.581|NRD1	Putative protein of unknown function, transcription is upregulated in an RHE model of oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	189085	190843	-	orf19.583	189085	190843	1	190843	189085	190840	189518		orf19.8215|IPF26707.1|IPF6391.1|Contig4-2778_0003|orf6.5697|CA3435|CaO19.583|IPF6391	Putative indoleamine 2,3-dioxygenase (IDO); IDO is the rate-limiting enzyme of tryptophan catabolism via kynurenine pathway; enzyme inhibition by 1-methyl-D,L-tryptophan causes increased hyphal growth; expressed in yeast-form cells and hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	190894	191769	-	orf19.584	190894	191769	1	191769	190894	191769	190894		orf19.8216|IPF26714.1|IPF6390.1|Contig4-2778_0005|orf6.5696|CA3434|CaO19.8216|CCP2|CaO19.584|CCP1	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	192388	193776	-	ntar_860	192388	193776	1	193776	192388	193413	193252			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	192507	192635	+	ntar_861	192507	192635	1	192507	192635					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	194301	195325	+	orf19.585	194301	195325	1	194301	195325	194352	195203		orf19.8217|IPF26717.1|IPF20133.1|Contig4-2778_0007|orf6.5695|CA3432|CaO19.585|MRPL17|CaO19.8217	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	195215	196659	-	orf19.586	195215	196659	1	196659	195215	196621	195377	ERV46	orf19.8218|IPF26709.1|IPF6383.2|Contig4-2633_0002|orf6.5694|CA3431|CaO19.8218|CaO19.586|FUN9	Transcription is induced upon filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	196724	198018	+	orf19.587	196724	198018	1	196724	198018	196724	197917		orf19.8219|orf19.9539|IPF25380.1|IPF18752.2|IPF26708.1|IPF6382.1|Contig4-2633_0004|orf6.5693|orf6.2477|CA3430|orf19.1983|CaO19.587|CaO19.8219|IPF6382	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	197848	198472	-	orf19.588	197848	198472	1	198472	197848	198313	197996		orf19.8220|orf19.9538|IPF25393.1|IPF8700.2|IPF6380.1|Contig4-2633_0005|orf6.2478|orf6.5692|CA3429|orf19.1982|CaO19.9538|CaO19.1982|CaO19.588|CaO19.8220|IPF6380	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	198571	199331	+	orf19.1981	198571	199331	1	198571	199331	198650	199138		orf19.9537|IPF25384.1|IPF8699.2|Contig4-2554_0006|orf6.2479|CA1135|IMP2|CaO19.1981|CaO19.9537	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	199431	201150	-	orf19.1980	199431	201150	1	201150	199431	201150	199552	GIT4	orf19.9536|IPF25367.1|IPF8698.2|Contig4-2554_0005|orf6.2480|CA1136|CaO19.9536|CaO19.1980|IFN2	Putative glycerophosphoinositol permease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	202497	204453	-	orf19.1979	202497	204453	1	204453	202497	204210	202603	GIT1	orf19.9535|IPF25363.1|IPF8694.2|IFN1|Contig4-2554_0002|orf6.2481|GIT3|CA1137|CaO19.1979|CaO19.9535	Putative glycerophosphoinositol permease; fungal-specific (no human or murine homolog); alkaline downregulated; transcription is specific to white cell type; caspofungin repressed; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	206321	208211	-	orf19.1978	206321	208211	1	208211	206321	207953	206349	GIT2	orf19.9534|IPF18978.2|IPF8692.2|orf6.2482|CA1138|CaO19.1978|IFN3	Putative glycerophosphoinositol permease; fungal-specific (no human or murine homolog); transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	210128	211315	-	orf19.1977	210128	211315	1	211315	210128	211286	210210	URA4	orf19.9533|IPF25375.1|IPF8687.1|Contig4-2794_0005|orf6.1407|CA0466|CaO19.9533|CaO19.1977	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	211440	212515	-	orf19.1976	211440	212515	1	212515	211440	211966	211610	TRX2	orf19.9532|IPF25391.1|IPF8686.2|Contig4-2794_0006|orf6.1408|CA0467|CaO19.1976|CaO19.9532	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	212431	213136	+	orf19.1975	212431	213136	1	212431	213136	212577	213023		orf19.9531|IPF8685.2|IPF29250.1|Contig4-2794_0008|orf6.1409|CA0468|DIB1|CaO19.1975|CaO19.9531	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	212977	214059	-	orf19.1974	212977	214059	1	214059	212977	213880	213101	TFS1	orf19.9530|IPF8684.2|IPF6281.2|Contig4-2794_0009|orf6.1410|orf6.1861|CA0748|CaO19.1974|IPF6281.1	Transcription is regulated upon yeast-hyphal switch; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	214450	215664	-	orf19.1973	214450	215664	1	215664	214450	215592	214546	HAP5	orf19.9529|IPF25373.1|IPF6283.2|Contig4-2794_0012|orf6.1862|CA0749|CaO19.9529|CaO19.1973	Component of CCAAT-binding transcription factor; roles in filamentous growth, low-iron (chelation) induction of FRP1 transcription; regulates genes with roles in respiratory growth; functional homolog of S. cerevisiae Hap5p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	215777	217313	-	orf19.1972	215777	217313	1	217313	215777	217288	215867		orf19.9528|IPF25370.1|IPF6284.1|Contig4-2794_0013|orf6.1863|CA0750|CaO19.9528|SET5|CaO19.1972|IPF6284	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	217462	217555	+	te(uuc)4	217462	217555	2	217462|217521	217498|217555				tE(UUC)4.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	217569	217662	+	te(uuc)3	217569	217662	2	217569|217628	217605|217662				tE(UUC)3.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	217958	219767	+	orf19.1971	217958	219767	1	217958	219767	218221	219705		orf19.9527|IPF25369.1|IPF6286.2|Contig4-2794_0015|orf6.1864|CA0751|CaO19.1971|CaO19.9527|IPF6286	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	220212	220283	+	tq(cug)1	220212	220283	1	220212	220283				tQ(CUG)1.2	tRNA-Gln predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	220314	221291	-	orf19.1970	220314	221291	1	221291	220314	221192	220488		orf19.9526|IPF18882.2|IPF6289.1|Contig4-2813_0019|orf6.5034|CA2941|CaO19.1970|CVB1|CaO19.9526	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	221441	223060	-	orf19.1968.1	221441	223060	1	223060	221441	222946	222671		IPF25390.1|IPF6293.1|Contig4-2813_0014|CA2943|MAK31	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	221848	222663	+	orf19.1969	221848	222663	1	221848	222663	221848	222663	CCW14	orf19.9525|IPF6292.2|IPF6291.1|Contig4-2813_0016|orf6.5035|CA2942|CaO19.9525|CaO19.1969|IPF6291	[NOT TRANSCRIBED?] Putative mannoprotein of cell wall with role in response to stress; increased mRNA abundance observed in cyr1 homozygous mutant (hyphal or yeast-form cells) and in ras1 homozygous mutant (yeast-form cells) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	223144	223985	+	orf19.1968	223144	223985	1	223144	223985	223459	223869		orf19.9524|IPF25386.1|IPF6294.1|Contig4-2813_0012|orf6.5036|CA2944|CaO19.1968|CaO19.9524|IPF6294	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	223858	224576	-	orf19.1967	223858	224576	2	224576|224401	224466|223858	224544	223938		orf19.9523|IPF25383.1|IPF6295.1|Contig4-2813_0011|orf6.5037|CA2945|CaO19.9523|IMG1|CaO19.1967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	224756	225667	-	orf19.1966	224756	225667	1	225667	224756	225614	224799	BUD23	orf19.9522|IPF25379.1|IPF6296.2|Contig4-2813_0010|orf6.5038|CA2946|CaO19.9522|CaO19.1966|IPF6296	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	225791	227551	-	orf19.1964	225791	227551	1	227551	225791	227465	225963		orf19.9520|IPF25368.1|IPF6298.2|IPF6298|Contig4-2813_0008|orf6.5040|CA2947|AQR1|CaO19.1964|CaO19.9520	Putative protein of unknown function; downregulated upon fluphenazine treatment; upregulated upon benomyl treatment and in an RHE model; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	228203	228460	+	ntar_862	228203	228460	1	228203	228460					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	228700	229403	+	ntar_863	228700	229403	1	228700	229403					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	229296	233433	-	orf19.1963	229296	233433	2	233433|232472	233105|229296	231072	229549		orf19.9519|IPF25364.1|IPF6301.2|Contig4-2813_0004|orf6.5041|CA2948|CaO19.9519|GDS1|CaO19.1963	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	234684	236608	-	orf19.1961	234684	236608	1	236608	234684	236456	234864		orf19.9516|IPF14506.1|IPF11296.1|Contig4-2193_0003|orf6.2315|orf6.5044|CA2949|CaO19.1961|IPF14506	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	243409	246451	-	orf19.1960	243409	246451	1	246451	243409	245611	244214	CLN3	orf19.9515|CLN2|IPF10874.1|IPF11287.3|Contig4-2487_0005|orf6.2316|orf6.5045|CA2950|CaO19.1960	G1 cyclin; depletion causes abolished budding and hyphal growth defects; likely to be essential; farnesol regulated, upregulated in biofilm; functional in S. cerevisiae; similar to S. cerevisiae Cln3p, which is a G1-specific cyclin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	251114	251296	-	ntar_864	251114	251296	1	251296	251114	251296	251114			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	251150	251375	+	ntar_865	251150	251375	1	251150	251375					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	253081	254608	+	orf19.1959	253081	254608	1	253081	254608	253350	254321		orf19.9514|IPF25377.1|IPF15485.2|Contig4-2473_0003|orf6.4080|CA2253|CaO19.9514|CaO19.1959|IPF15485	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	254747	255256	+	orf19.1958	254747	255256	1	254747	255256	254747	255256			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	256517	256770	-	ntar_866	256517	256770	1	256770	256517					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	256877	257149	+	ntar_867	256877	257149	1	256877	257149	256963	257097			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	261735	262810	+	orf19.1957	261735	262810	1	261735	262810	261888	262682	CYC3	orf19.9512|orf6.4082|IPF14754.1|IPF13303.1|Contig4-2143_0003|orf6.343|CA2255|CaO19.1957	Cytochrome c heme lyase, mitochondrial; gene also encodes antigenic cell-wall protein; mRNA more abundant in filaments than yeast-form; induced on polystyrene adherence, interaction with macrophage; N-glycosylation, 2 heme-binding motifs [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	262719	265199	-	orf19.1956	262719	265199	1	265199	262719	265067	262806		orf19.9511|IPF19331.2|IPF14757.2|Contig4-2143_0002|orf6.342|orf6.4083|CA2256|CaO19.1956|IPF14757	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	265210	265693	-	ntar_1424	265210	265693	2	265693|265373	265633|265210					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	265956	266931	+	orf19.1955	265956	266931	2	265956|266780	266705|266931	266079	266809		orf19.9510|IPF16837.1|IPF14758.2|Contig4-2077_0002|Contig4-2143_0001|orf6.4084|orf6.914|CA2257|SHR5|CaO19.1955	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	266976	268136	+	orf19.1954	266976	268136	1	266976	268136	266976	268136	PUS4	orf19.9509|IPF16835.2|IPF12142.3|Contig4-2077_0003|orf6.1980|orf6.915|CA0221|CaO19.1954	Transcription is regulated by Nrg1p, Mig1p, and Tup1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	268278	269390	+	orf19.1953	268278	269390	1	268278	269390	268278	269390		orf19.9508|IPF12141|IPF12141.1|IPF18863.1|IPF16834.2|Contig4-2077_0004|orf6.1978|orf6.916|orf6.1979|CA0222|orf19.1952|CA6266|IPF12141.5f|CaO19.1953	Predicted ORF in Assemblies 19, 20 and 21; not essential for viability; merged with orf19.1952 in Assembly 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	269484	270009	+	orf19.1950	269484	270009	1	269484	270009	269484	269954		orf19.9506|IPF12138.1|IPF18864.1|Contig4-2077_0005|Contig4-2375_0009|orf6.1976|orf6.918|CA0820|CaO19.1950|IPF12138	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	269578	269773	-	ntar_868	269578	269773	1	269773	269578					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	270250	272504	+	orf19.1949	270250	272504	1	270250	272504	270302	272383	VPS1	orf19.9505|IPF19611.2|IPF19610.1|Contig4-2375_0001|Contig4-2375_0005|orf6.1975|orf6.919|CA0819|CaO19.1949	Protein described as a dynamin-family GTPase-related protein; induced upon adherence to polystyrene; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	272509	272675	-	ntar_869	272509	272675	1	272675	272509					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	272970	274481	+	orf19.1948	272970	274481	1	272970	274481	273059	274360		orf19.9504|IPF25376.1|IPF12135.2|Contig4-2375_0006|orf6.1974|orf6.5591|CA0818|CaO19.1948|IPF12135|CA3351|IPF18347|IPF18347.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	274387	275437	-	orf19.1946	274387	275437	1	275437	274387	275380	274481		orf19.9501|IPF16195.1|IPF16194.2|Contig4-1970_0003|orf6.1972|orf6.5593|CA3352|CaO19.1946|IPF16194	Similar to an aldose 1-epimerase-related protein; antigenic during murine systemic infection; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	276577	278842	+	orf19.1945	276577	278842	1	276577	278842	277008	278423	AUR1	orf19.9500|IPF11286.2|IPF18866.2|Contig4-2985_0028|orf6.1971|orf6.5594|CA3353|CaO19.1945	Inositolphosphorylceramide (IPC) synthase, catalyzes the key step in the synthesis of sphingolipids; target for antifungal drugs; mutation confers hypersensitivity to aureobasidin A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	280543	283500	+	orf19.1944	280543	283500	1	280543	283500	280836	283307	GPR1	orf19.9499|IPF11281.2|IPF29241.1|Contig4-2985_0021|Contig4-2985_0023|orf6.5595|CA3354|CaO19.1944|CaO19.9499|CA3354 gi:30513635|IPF11281	Putative G-protein-coupled receptor of plasma membrane; required for wild-type hyphal growth; acts in cAMP-PKA pathway; reports differ on role in cAMP-mediated glucose signaling; Gpr1p C terminus binds Gpa2p; regulates HWP1 and ECE1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	283868	286240	+	orf19.1943	283868	286240	1	283868	286240	283868	286240		orf19.9498|IPF11277.2|IPF29244.1|Contig4-2985_0019|Contig4-2985_0020|orf6.5596|CA3355|CaO19.1943|IPF11277	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	286704	288826	+	orf19.1942	286704	288826	1	286704	288826	286755	288638	SGE1	orf19.9497|orf6.5597|IPF9560.2|IPF29247.1|Contig4-2985_0017|CA3356|SGE12|CaO19.1942|CaO19.9497|IPF9560	Protein described as a multidrug resistance factor; transcriptionally regulated by iron; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	288651	290203	-	orf19.1941	288651	290203	1	290203	288651	290177	288720	NUF2	orf19.9496|IPF25366.1|IPF9562.2|Contig4-2985_0015|orf6.5598|CA3357|CaO19.9496|CaO19.1941|IPF9562	Kinetochore component; amount of Nuf2p and Mtw1p protein detected at each centromere is consistent with a single kinetochore microtubule attachment site [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	290353	291315	-	orf19.1940	290353	291315	1	291315	290353	291183	290443		orf19.9495|IPF25378.1|IPF19984.1|Contig4-2985_0013|orf6.5599|CA3358|CAT5|CaO19.1940|CaO19.9495|IPF19984	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	291412	292591	+	ntar_870	291412	292591	1	291412	292591	291706	291870			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	291435	292571	-	orf19.1939	291435	292571	1	292571	291435	292571	291477		orf19.9494|IPF25374.1|IPF9566.2|Contig4-2985_0012|orf6.5600|CA3359|CaO19.9494|CaO19.1939|IPF9566	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	292842	292987	+	ntar_871	292842	292987	1	292842	292987					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	293624	294470	+	orf19.1938	293624	294470	1	293624	294470	293764	294402		orf19.9493|IPF9568.1|IPF9569.2|IPF9568|Contig4-2985_0006|orf6.5601|CA3360|CaO19.1938	Decreased transcription is observed in an azole-resistant strain that overexpresses CDR1 and CDR2; increased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	294617	296595	+	orf19.1936	294617	296595	1	294617	296595	294667	296523	SNF1	orf19.9491|IPF9571.2|IPF19131.2|Contig4-2985_0003|orf6.5603|orf6.832|CA3361|CaO19.1936	Essential protein; functional homolog of S. cerevisiae Snf1p regulator of sugar metabolism; constitutively expressed; Thr208 phosphorylation may have regulatory role; up-regulation associated with azole resistance; has polyhistidine tract [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	296722	297421	+	orf19.1935	296722	297421	1	296722	297421	296722	297168		IPF9572.1|Contig4-2985_0002|orf6.831|CaO19.1935	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	297424	299231	+	orf19.1934	297424	299231	1	297424	299231	297649	299112		orf19.9490|IPF25371.1|IPF9787.2|Contig4-2583_0018|Contig4-2985_0001|orf6.5604|orf6.830|CA0197|HST3|CaO19.1934|IPF9787	Predicted ORF in Assemblies 19, 20 and 21; repressed upon high-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	299390	301978	+	orf19.1933	299390	301978	1	299390	301978	299586	301436		orf19.9489|IPF9789.2|IPF19133.2|Contig4-2583_0014|Contig4-2583_0017|orf6.5605|orf6.829|CA3362|CaO19.1933|IPF9789	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	303290	305640	+	orf19.1932	303290	305640	1	303290	305640	303390	305522	CFL4	orf19.9488|orf6.292|FRE5|FRE32|IPF9791.2|IPF19355.2|CFL94|Contig4-2583_0010|orf6.5606|CA3363|CaO19.1932	Similar to ferric reductase, C-terminal region; expression greater in low iron; transcription is negatively regulated by Sfu1p; ciclopirox olamine induced; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	308765	310897	+	orf19.1930	308765	310897	1	308765	310897	308765	310897	CFL5	orf19.9486|orf6.5607|orf6.1281|FRE31|IPF25358.1|IPF15107.3|FRE4|CFL90|Contig4-2699_0003|Contig4-2699_0004|CA0397|CaO19.1930|IPF15107.2	Protein similar to ferric reductase Fre10p; expression greater in low iron; negatively regulated by Sfu1p; ciclopirox olamine, flucytosine induced; amphotericin B repressed; transcription is positively regulated by Tbf1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	310852	311867	-	orf19.1927	310852	311867	1	311867	310852	311744	311136	SNM1	orf19.9483|IPF19001.2|IPF15109.2|Contig4-2699_0002|orf6.1278|CA0396|CaO19.1927|CaO19.9483	Protein described as similar to RNase MRP RNA binding protein; ciclopirox olamine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	313139	315341	+	orf19.1926	313139	315341	1	313139	315341	313350	315341	SEF2	orf19.9482|orf19.11606|IPF25372.1|IPF15112.2|IPF23122.1|IPF18736.1|Contig4-2911_0020|orf6.1277|orf6.2618|CA0395|orf19.4129|CaO19.9482|CaO19.1926|SEF11.5eoc	Putative zinc cluster protein; expression is repressed by Sfu1p under high-iron conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=H scenario_last_exon=H]
Ca21chr5	315207	318050	-	orf19.4131	315207	318050	1	318050	315207	317987	315402		orf19.11608|IPF23115.1|IPF14870.2|Contig4-2911_0018|Contig4-2911_0019|orf6.2616|CA1223|CaO19.4131|CaO19.11608|IPF14870	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	318216	319156	+	orf19.4132	318216	319156	2	318216|318479	318410|319156	318368	318687		orf19.11609|IPF23123.1|IPF14871.1|Contig4-2911_0016|orf6.2615|CA1222|CaO19.11609|CaO19.4132|SNA2|IPF14871	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	319296	319618	+	ntar_872	319296	319618	1	319296	319618	319456	319590			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	319309	320913	-	orf19.4133	319309	320913	1	320913	319309	320892	319510		orf19.11610|IPF23119.1|IPF14872.2|Contig4-2911_0014|orf6.2614|CA1221|CaO19.4133|CaO19.11610|IPF14872	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	320959	322541	-	orf19.4134	320959	322541	1	322541	320959	322260	321043		orf19.11611|IPF23120.1|IPF14985.2|Contig4-2911_0013|orf6.2613|CA1220|CaO19.11611|CaO19.4134|IPF14985	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	322654	324329	+	orf19.4135	322654	324329	1	322654	324329	322744	324240	PRC2	orf19.11612|IPF9814.2|IPF14986.2|Contig4-2911_0012|orf6.2612|orf6.5243|CA1219|CPY3|CaO19.4135	Protein described as a carboxypeptidase; upregulated in the presence of human neutrophils [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	324409	328268	+	orf19.4136	324409	328268	1	324409	328268	324438	328229	YBL053	orf19.11613|IPF9818.2|IPF14987.3|Contig4-2911_0009|Contig4-2911_0010|orf6.2611|orf6.5242|orf6.5240|CA3093|CA6319|orf19.4138|orf19.4139|TOF1|TOF1.5f	Predicted ORF in Assemblies 19, 20 and 21; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	328167	329870	-	orf19.4142	328167	329870	1	329870	328167	329793	328285		orf19.11617|orf19.11618|IPF9821.2|IPF19600.1|IPF19601.2|IPF9821.5f|Contig4-2911_0007|Contig4-2911_0008|orf6.5238|orf6.5237|orf6.717|CA3092|CA3091|orf19.4141	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	330456	330997	+	orf19.4143	330456	330997	1	330456	330997	330482	330910		orf19.11619|IPF18385.1|IPF9823.2|Contig4-2911_0006|orf6.5236|orf6.718|CA3090|CaO19.4143|IPF18385	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	330905	332874	-	orf19.4144	330905	332874	1	332874	330905	332823	331012		orf19.11620|IPF9825.2|IPF19173.1|Contig4-2911_0005|orf6.5235|orf6.719|CA3089|CaO19.4144|IPF9825	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	333089	336568	-	orf19.4145	333089	336568	1	336568	333089	336412	333155	ZCF20	orf19.11621|IPF9826.2|IPF19172.2|Contig4-2294_0005|Contig4-2911_0001|orf6.236|orf6.5234|orf6.720|CA3088|CaO19.4145|IPF9826	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	336922	337187	-	ntar_873	336922	337187	1	337187	336922	337171	337025			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	338168	338860	+	orf19.4146	338168	338860	1	338168	338860	338300	338620	SMD3	orf19.11622|IPF14903.1|IPF19380.1|Contig4-2294_0001|orf6.235|orf6.5233|CA3087|CaO19.4146	Protein described as a core snRNP protein; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	338662	340461	-	orf19.4147	338662	340461	1	340461	338662	340319	338769	GLR1	orf19.11623|IPF14902.2|IPF28513.1|Contig4-2850_0001|orf6.234|orf6.5232|CA3086|CaO19.4147	Glutathione reductase; transcriptionally regulated by Cap1p; upregulated in the presence of human neutrophils; oxidative stress-induced via Cap1p; overexpression correlates with multidrug resistance in a cap1 mutant, farnesol induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	340697	342392	-	orf19.4148	340697	342392	1	342392	340697	342233	340785		orf19.11624|IPF11622.3|IPF17086.2|Contig4-2850_0004|orf6.5231|CA3085|CaO19.4148|CaO19.11624|IPF17086	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	342742	344165	+	orf19.4149.1	342742	344165	2	342742|343344	342960|344165	342916	343766		IPF23127.1|IPF20127.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	343416	343904	-	orf19.4149	343416	343904	1	343904	343416	343904	343416		orf19.11625|IPF23121.1|IPF11625.2|Contig4-2850_0005|Contig4-2850_0007|orf6.5230|CA3084|CaO19.4149|CaO19.11625|IPF11625	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	343961	344954	-	orf19.4150	343961	344954	1	344954	343961	344807	344118		orf19.11626|IPF11626.2|IPF16833.3|Contig4-2850_0008|orf6.5229|orf6.554|CA3083|CaO19.4150|CaO19.11626|IPF11262	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	345240	347570	-	orf19.4151	345240	347570	2	347570|347282	347379|345240	347570	345240	SPO1	orf19.11628|IPF23116.1|IPF16830.2|Contig4-2850_0013|orf6.5227|orf6.553|CA0111|CaO19.4151|IPF16830	Protein similar to phospholipase B; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	345260	345403	+	ntar_874	345260	345403	1	345260	345403					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	345945	346138	+	ntar_875	345945	346138	1	345945	346138	345974	346138			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	347709	351099	-	orf19.4152	347709	351099	1	351099	347709	351071	347919	CEF3	orf19.11629|TEF3|YEF3|EFT3|IPF11638.2|IPF16826.3|HEF1|Contig4-2850_0015|orf6.5226|orf6.552|CA3081|CaO19.4152	Translation elongation factor 3 (EF-3); antigenic in human; predicted C-term nucleotide-binding active site, poly-Lys region; PROTEIN localizes to surface of yeast form, not hyphae; polystyrene adherence induced; EF-3 is fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	351313	351752	+	ntar_876	351313	351752	1	351313	351752					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	352009	352396	+	ntar_877	352009	352396	1	352009	352396					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	352409	352696	-	ntar_878	352409	352696	1	352696	352409	352543	352409			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	353182	355057	+	orf19.4153	353182	355057	1	353182	355057	353433	355034		orf19.13678|orf19.11630|IPF23118.1|IPF14634.2|IPF20861.1|IPF18364.2|Contig4-2850_0022|orf6.5225|orf6.5449|CA3080|orf19.6299|ULA1|CaO19.4153|CaO19.11630|IPF14634	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	354823	357167	-	orf19.6298	354823	357167	1	357167	354823	357106	355211	SPB4	orf19.13677|orf19.11631|IPF23117.1|IPF14636.2|IPF20846.1|IPF15694.1|Contig4-2128_0004|orf6.5224|orf6.5448|CA3237|orf19.4154|CaO19.6298|SPB41|CaO19.13677	Predicted ORF in Assemblies 19, 20 and 21; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	357170	358850	+	orf19.6297	357170	358850	1	357170	358850	357170	358639		orf19.13676|IPF20852.1|IPF15695.1|Contig4-2128_0002|orf6.5447|CA3236|DEG1|CaO19.6297|CaO19.13676	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	358590	359496	-	orf19.6296	358590	359496	1	359496	358590	359455	358670		orf19.13675|IPF20856.1|IPF15696.2|Contig4-2128_0001|orf6.5446|CA3235|CaO19.13675|SNF8|CaO19.6296	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	360957	362706	+	orf19.6295	360957	362706	1	360957	362706	360974	362542	MAS2	orf19.13674|IPF20850.1|IPF10850.2|Contig4-2045_0001|orf6.5445|CA3234|CaO19.13674|CaO19.6295	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	362550	368622	-	orf19.6294	362550	368622	1	368622	362550	368537	362691	MYO1	orf19.13673|IPF20864.1|IPF10851.2|Contig4-2045_0002|orf6.5444|CA3233|CaO19.6294|CaO19.13673	Component of actomyosin ring at neck of newly-emerged bud [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	369123	369595	+	ntar_879	369123	369595	1	369123	369595	369253	369390			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	375493	377133	+	orf19.3208	375493	377133	1	375493	377133	375493	377133	DAL52	orf19.10720|IPF24124.1|IPF14177.2|Contig4-2538_0004|Contig4-2538_0005|orf6.1025|orf6.4391|DAL6|CA2478|CaO19.10720|DAL54|CaO19.3208	Putative allantoate permease; fungal-specific (no human or murine homolog); not essential for viability; similar to S. cerevisiae Dal5p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	377136	380007	-	orf19.3207	377136	380007	1	380007	377136	379759	377678	CCN1	orf19.10719|CLN1|IPF24117.1|IPF15597.2|Contig4-2538_0006|orf6.4392|CA2479|CaO19.10719|CaO19.3207	G1 cyclin; required for hyphal growth maintenance (not initiation); cell-cycle regulated transcription (G1/S); Cdc28p-Ccn1p initiates Cdc11p S394 phosphorylation on hyphal induction; expression in S. cerevisiae inhibits pheromone response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	382385	384224	-	orf19.3206	382385	384224	1	384224	382385	384157	382508	CCT7	orf19.10718|IPF9837.2|IPF28858.1|Contig4-2661_0012|orf6.158|orf6.4393|CA2480|CaO19.3206|CaO19.10718	Predicted ORF in Assemblies 19, 20 and 21. Protein detected by mass spec in exponential and stationary phase cultures. [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	384382	385244	+	orf19.3205	384382	385244	1	384382	385244	384458	385090		orf19.10717|IPF24128.1|IPF9838.2|Contig4-2661_0011|orf6.4394|CA2481|CaO19.3205|MRPL36|CaO19.10717	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	385175	387592	-	orf19.3204	385175	387592	1	387592	385175	387527	385311		orf19.10716|IPF24114.1|IPF9841.1|Contig4-2661_0010|orf6.4395|CA2482|CaO19.10716|CaO19.3204|IPF9841	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	387657	390564	-	orf19.3203	387657	390564	1	390564	387657	390336	387781	RCY1	orf19.10715|IPF24110.1|IPF19758.1|Contig4-2661_0007|Contig4-2661_0008|orf6.4396|CA2483|CaO19.10715|CaO19.3203|IPF19758	Putative F-box protein involved in endocytic membrane traffic and/or recycling; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	387713	388108	+	ntar_880	387713	388108	1	387713	388108					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	390658	393378	+	orf19.3202	390658	393378	1	390658	393378	390739	393300		orf19.10714|IPF9846|IPF9846.2|IPF28851.1|Contig4-2661_0004|Contig4-2661_0006|orf6.4397|CA2484|CaO19.3202	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	393174	394502	-	orf19.3201	393174	394502	3	394502|394222|393594	394297|393851|393174	394488	393526	MTLA1	A1|IPF11162.1|IPF11161.2|Contig4-2559_0015|orf6.1884|CA0760|IPF11161.3	A1p and Alpha2p act together to repress white-opaque switching and mating (an opaque-specific process); homeodomain protein; gene of the MTLa (Mating Type Like) locus; a/alpha mating type may increase virulence, competitive advantage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	394537	395279	-	orf19.3200	394537	395279	2	395279|394928	394984|394537	395253	394593	MTLA2	A2|IPF11164.1|orf6.1883	Master regulator (activator) of a-type mating; has HMG domain, which is predicted to bind DNA; gene has intron; not related to S. cerevisiae MATa2; a/alpha mating type may increase virulence, provides competitive advantage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	395318	398266	-	orf19.3199	395318	398266	1	398266	395318	398238	395368	PIKA	IPF9853.1|IPF11166.2|Contig4-1611_0004|Contig4-2559_0011|Contig4-2559_0013|orf6.1882|CA6207|PIK1|CaO19.3199	Putative phosphatidylinositol kinase; gene is located within the MTLa mating-type-like locus [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	398731	400129	-	orf19.3198	398731	400129	1	400129	398731	400104	398803	OBPA	IPF9854.2|IPF11167.1|Contig4-1502_0001|Contig4-1611_0001|Contig4-2559_0010|orf6.1881|CA0759|CaO19.3198|OBPa|IPF11167	Similar to oxysterol binding protein; gene is located within the MTLa mating-type-like locus; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	400487	402385	+	orf19.3197	400487	402385	1	400487	402385	400510	402177	PAP1	IPF9850.1|IPF19882.1|Contig4-2559_0008|Contig4-2559_0009|orf6.1880|PAPa|CA0758|CaO19.3197|PAP11	Poly(A) polymerase, likely involved in mRNA polyadenylation; PAP is inhibited by parnafungin antifungals; gene is located within the MTLa mating-type-like locus [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	402485	402787	-	orf19.3196	402485	402787	1	402787	402485	402787	402485		IPF24136.1|IPF28871.1|orf6.1879|CaO19.3196	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	402835	404785	-	orf19.3195	402835	404785	1	404785	402835	404634	402835	HIP1	orf19.10706|IPF11171.3|IPF28855.1|GAP3|GAP7|Contig4-2559_0006|orf6.1878|orf6.4405|orf6.713|orf6.908|CA0160|CaO19.3195|GAP21|CA0757|GAP7.3eoc|IPF11170.2|GAP7.5eoc|IPF11171.2	Alkaline upregulated; flucytosine induced; regulated by Plc1p, Gcn2p and Gcn4p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	407397	409610	+	orf19.3193	407397	409610	1	407397	409610	407977	409176	FCR3	orf19.10704|orf6.906|IPF19842.1|IPF19852.1|Contig4-2798_0003|orf6.715|orf6.716|CA0219|YAP3|CaO19.3193	Transcriptional regulator of the bZip family; partially functionally complements the fluconazole sensitivity of an S. cerevisiae pdr1 pdr3 double mutant; probable ortholog of S. cerevisiae Yap3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	409876	411922	+	orf19.3192	409876	411922	1	409876	411922	409958	411727	STI1	orf19.10702|orf6.1022|IPF9198.3|IPF19105.2|Contig4-1933_0004|orf6.4488|orf6.905|CA0265|CA6273|orf19.3191|STI1.5f	Protein that interacts with Cdc37p and Crk1p in two-hybrid system; may be involved in Cdc37p chaperone activity; biofilm induced; soluble protein in hyphae; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	411761	415413	-	orf19.3190	411761	415413	1	415413	411761	415006	411971	HAL9	orf19.10701|ZNC3|IPF9196.1|IPF16067.2|Contig4-1956_0001|Contig4-1956_0002|orf6.4487|CA2542|CaO19.3190|HAL93|IPF16067	Protein with Zn(2)-Cys(6) binuclear cluster; gene in zinc cluster region of Chr. 5; transcriptionally activated by Mnl1p in weak acid; similar to S. cerevisiae Hal9p, which is a putative transcription factor involved in salt tolerance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	415584	416046	+	ntar_881	415584	416046	1	415584	416046					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	416300	419551	-	orf19.3188	416300	419551	1	419551	416300	419375	416430	TAC1	orf19.10700|orf19.10699|ZNC2|IPF19124.2|IPF9191.2|Contig4-2456_0006|orf6.1024|orf6.4485|orf6.854|orf6.4486|orf6.855|TAC1-1|TAC1-2|CA2541|orf19.3189|IPF9191.3f	Transcriptional activator of drug-responsive genes including CDR1 and CDR2; has Zn(2)-Cys(6) binuclear cluster; binds DRE element; gene in zinc cluster region near MTL locus; resequencing indicates that TAC1 spans orf19.3188 and orf19.3189 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	420729	423979	-	orf19.3187	420729	423979	1	423979	420729	423724	420956	ZNC1	orf19.10697|IPF17473.2|IPF9188.2|Contig4-2456_0001|orf6.4484|orf6.852|orf6.853|CA2539|CaO19.3187|HAL91|IPF9188	Putative transcription factor; has Zn(2)-Cys(6) binuclear cluster; predicted to bind DNA; regulated by Gcn2p and Gcn4p; gene is located in zinc cluster region of Chromosome 5, near the MTL locus [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	424411	424746	+	orf19.3186	424411	424746	1	424411	424746	424411	424746		IPF28870.1|orf6.4483|CaO19.3186	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	424769	427176	+	orf19.3185	424769	427176	1	424769	427176	424769	427117		orf19.10695|IPF24113.1|IPF15324.2|Contig4-2288_0004|orf6.4482|CA2538|NAT1|CaO19.3185	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	427085	428015	-	orf19.3184	427085	428015	1	428015	427085	427872	427225		orf19.10694|IPF24126.1|IPF20108.1|Contig4-2288_0005|orf6.4481|CA2537|SFT22|CaO19.3184|CaO19.10694|SFT21|IPF20108	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	428033	429008	+	orf19.3183	428033	429008	1	428033	429008	428137	428811		orf19.10693|IPF24127.1|IPF20107.1|Contig4-1727_0001|Contig4-2288_0006|orf6.4480|CA2536|CaO19.3183|CaO19.10693|IPF20107	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	428616	429194	-	orf19.3181.1	428616	429194	1	429194	428616	429048	428884		IPF24116.1|IPF20106.1|CA2535|NCE11	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	429549	430620	+	orf19.3182	429549	430620	1	429549	430620	429623	430150	GIS2	orf19.10692|orf6.4479|IPF24129.1|IPF12793.2|Contig4-1727_0004|CA2534|CaO19.10692|CaO19.3182|IPF12793	Transcriptionally regulated by iron; expression greater in high iron; transcription reduced upon yeast-hyphal switch; similar to proteins that bind nucleic acid [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	429604	430590	-	ntar_882	429604	430590	1	430590	429604	430126	429785			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	430800	432329	-	orf19.3180	430800	432329	1	432329	430800	432245	430863		orf19.10690|IPF24125.1|IPF12790.2|Contig4-1727_0007|Contig4-2248_0003|orf6.4477|CA2533|INP54|CaO19.3180|CaO19.10690|IPF12790	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	432414	434097	+	orf19.3178	432414	434097	1	432414	434097	432444	433985		orf19.10688|IPF24121.1|IPF20105.1|Contig4-2248_0005|orf6.4475|CA2532|CaO19.3178|PRP9|CaO19.10688	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	434195	436623	+	orf19.3177	434195	436623	1	434195	436623	434212	435981		orf19.10687|IPF24120.1|IPF12784.2|Contig4-2248_0008|orf6.4474|CA2531|CaO19.10687|CaO19.3177|RIB2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	435899	437678	-	orf19.3176	435899	437678	1	437678	435899	437588	435999	RIM21	orf19.10686|IPF16822.2|IPF12782.2|Contig4-2507_0010|orf6.1484|orf6.4473|CA2530|CaO19.3176|IPF12782	Protein involved in the pH response pathway; required for activation of the transcription factor Rim101p and for alkaline pH-induced hyphal growth; may function as a sensor of alkaline pH [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	436810	437042	+	ntar_883	436810	437042	1	436810	437042					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	437877	440090	-	orf19.3175	437877	440090	1	440090	437877	440048	438165		orf19.10685|IPF16916.2|IPF16824.3|Contig4-2507_0007|Contig4-2507_0008|orf6.1483|orf6.4472|YOR256W|CA0510|CaO19.3175|ETF1	Predicted ORF in Assemblies 19, 20 and 21; alkaline downregulated; repressed by nitric oxide; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	440598	443802	-	orf19.3174	440598	443802	1	443802	440598	443366	440832	CDC24	orf19.10684|IPF19624.1|IPF19625.1|Contig4-2507_0005|orf6.1241|orf6.1482|CA0509|CaO19.3174	GDP-GTP exchange factor for Cdc42p; phosphorylated; required for maintenance of hyphal growth; misexpression blocks hyphal growth and causes avirulence in a mouse model of systemic infection; antigenic during human oral infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	443705	444572	+	ntar_884	443705	444572	1	443705	444572	444177	444446			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	444478	445572	-	orf19.3173	444478	445572	1	445572	444478	445544	444864		orf19.10683|IPF19030.2|IPF12012.2|Contig4-1691_0006|orf6.1240|CA0379|SSP120|CaO19.3173	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	446231	446632	+	orf19.3172	446231	446632	1	446231	446632	446231	446632		orf19.10682|IPF12010.2|IPF28867.1|Contig4-1566_0001|Contig4-1691_0001|orf6.1163|orf6.1239|CaO19.3172	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	446783	448830	-	orf19.3171	446783	448830	1	448830	446783	448569	446995	ACH1	orf19.10681|IPF12009.2|IPF28861.1|Contig4-1566_0005|orf6.1164|orf6.1238|CA0345|CaO19.3171	Acetyl-coA hydrolase; acetate utilization; nonessential; soluble protein in hyphae; antigenic in human; induced on polystyrene adherence; farnesol-, ketoconazole-induced; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	449688	449952	+	ntar_885	449688	449952	1	449688	449952	449818	449952			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	451270	453611	-	orf19.3170	451270	453611	1	453611	451270	453568	451382		orf19.10680|IPF18726.2|IPF3178.2|Contig4-2939_0001|orf6.1165|orf6.1234|orf6.2668|CA0378|CaO19.3170|IPF3178	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	453759	454987	-	orf19.3169	453759	454987	1	454987	453759	454903	453845		orf19.10678|IPF18725.1|IPF3177.2|Contig4-2939_0002|orf6.1235|orf6.2669|CA1257|CaO19.3169|IPF18725	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	455173	456244	+	orf19.3168	455173	456244	1	455173	456244	455238	456230	RPN8	orf19.10677|IPF18724.1|IPF3176.2|Contig4-2939_0004|orf6.1236|orf6.2670|CA1258|CaO19.3168	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B; transcription is regulated by Mig1p; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	456395	457916	+	orf19.3167	456395	457916	1	456395	457916	456472	457857		orf19.10676|IPF3174.2|IPF19016.2|Contig4-2939_0006|orf6.1237|orf6.2671|CA1259|COX10|CaO19.3167|IPF3174	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	458101	463296	+	orf19.3166	458101	463296	1	458101	463296	458193	463202		orf19.10675|IPF24132.1|IPF3170.2|Contig4-2939_0010|orf6.2672|CA1260|DOP1|CaO19.3166|CaO19.10675|IPF3170	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	463390	464450	+	orf19.3163	463390	464450	1	463390	464450	463418	464404		orf19.10672|IPF19637.2|IPF28863.1|Contig4-2939_0011|orf6.1665|orf6.2675|CA0625|CaO19.3163|IPF19637|IPF19638.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	464332	465544	-	orf19.3161	464332	465544	1	465544	464332	465402	464440		orf19.10670|IPF17400.3|IPF3161.2|Contig4-2939_0012|orf6.1667|orf6.1772|CA0626|CaO19.3161|IPF3161	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	465537	465883	+	ntar_886	465537	465883	1	465537	465883	465650	465796			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	466373	466879	-	orf19.3160	466373	466879	1	466879	466373	466879	466373	HSP12	orf19.10669|orf19.13883|orf6.1668|IPF3160.2|CA0627|CaO19.3160	Heat-shock protein; induced upon osmotic/oxidative/cadmium stress, fluphenazine treatment, low iron, CDR1 and CDR2 overexpression, or ssn6 or ssk1 homozygous null mutation; repressed by Hog1p, flucytosine, elevated CO2 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	467497	467790	+	orf19.3159.4	467497	467790	1	467497	467790	467497	467790		IPF3152.1|IPF28869.1|Contig4-2734_0009	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	473411	473917	+	orf19.4216	473411	473917	1	473411	473917	473411	473917		orf19.11692|HSP12|Contig4-2148_0004|Contig4-2734_0007|Contig4-2734_0006|IPF23008.1|IPF17399.2|orf6.1771|orf6.2761|CaO19.11692|CaO19.4216|CaO19.10669	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in hyphae compared to yeast-form cells; transcription is increased in populations of cells exposed to fluconazole over multiple generations [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	473926	474113	+	ntar_887	473926	474113	1	473926	474113					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	474209	476995	-	orf19.4219	474209	476995	1	476995	474209	476853	474370	RIX7	orf19.11695|IPF22933.1|IPF3147.2|Contig4-2936_0001|orf6.2764|CA1318|YLL34|CaO19.4219|CaO19.11695|IPF3147	Protein similar to S. cerevisiae Rix7p which is a putative ATPase of the AAA family required for ribosomal subunit export from the nucleus; mutation impairs hyphal growth and biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	474794	475372	+	orf19.4217	474794	475372	1	474794	475372	474794	475372		IPF22996.1|IPF3146.1|orf6.2762	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	477021	477828	-	orf19.4220	477021	477828	1	477828	477021	477815	477264		orf19.11696|IPF23004.1|IPF3144.2|Contig4-2936_0002|orf6.2765|CA1319|CaO19.4220|CaO19.11696|IPF3144	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	477916	479905	-	orf19.4221	477916	479905	1	479905	477916	479720	478026	ORC4	orf19.11697|IPF22966.1|IPF3143.2|Contig4-2936_0005|orf6.2766|CA1320|CaO19.11697|CaO19.4221|IPF3143	Phosphorylated protein similar to S. cerevisiae Orc4p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	480271	482298	+	orf19.4222	480271	482298	1	480271	482298	480271	482298	SST2	orf19.11698|IPF22951.1|IPF3141.2|Contig4-2936_0006|orf6.2767|CA1321|CaO19.4222|CaO19.11698|IPF3141	Predicted regulator of G-protein signaling in mating pathway; homozygous null mutation causes alpha-factor hypersensitivity and mating defect (in an opaque MTLa/MTLa background); transcription induced by alpha factor [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr5	482206	484016	-	orf19.4223	482206	484016	1	484016	482206	483987	482383	GCD11	orf19.11699|EIF2|IPF18245.2|IPF3140.1|Contig4-2936_0007|orf6.2768|orf6.6621|CA1322|CaO19.11699|CaO19.4223	Protein similar to S. cerevisiae Gcd11p, which is a subunit of translation initiation factor eIF2; likely to be essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	484154	487225	-	orf19.4225	484154	487225	1	487225	484154	487140	484186	LEU3	orf19.11700|IPF3138.2|IPF17458.3|Contig4-2936_0008|Contig4-2936_0011|Contig4-2936_0012|orf6.484|orf6.6620|orf6.2769|CA4146|CaO19.4225	Predicted zinc-finger protein; has similarity to S. cerevisiae Leu3p, which is involved in regulation of branched-chain amino acid biosynthesis genes; alkaline upregulated; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	484182	484675	+	ntar_888	484182	484675	1	484182	484675					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	487539	488260	-	orf19.4225.1	487539	488260	2	488260|488051	488128|487539	488200	487831			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	488684	489778	+	orf19.4227	488684	489778	1	488684	489778	488684	489778		orf19.11702|IPF22986.1|IPF3130.1|Contig4-2936_0016|orf6.6618|CA4145|CaO19.4227|CaO19.11702|IPF3130	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	488750	489835	-	ntar_889	488750	489835	1	489835	488750	489249	489004			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	489805	491211	+	orf19.4228	489805	491211	1	489805	491211	489979	490962		orf19.11703|IPF22990.1|IPF13340.2|Contig4-2936_0017|orf6.6617|CA4144|CaO19.4228|CaO19.11703|IPF13340	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	490999	491851	-	orf19.4229	490999	491851	1	491851	490999	491689	491111		orf19.11704|IPF23003.1|IPF13339.2|Contig4-2936_0018|orf6.6616|CA4143|DDP1|CaO19.11704|CaO19.4229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	492255	493255	+	orf19.4230	492255	493255	1	492255	493255	492387	493232		orf19.11705|IPF13337.2|IPF19084.2|Contig4-2936_0020|orf6.6615|orf6.967|CA4142|PRE4|CaO19.4230	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	498728	499921	+	orf19.4231	498728	499921	1	498728	499921	498728	499921	PTH2	orf19.11706|IPF16485.2|IPF19085.2|Contig4-1833_0002|orf6.6614|orf6.966|CA6212|CaO19.11706|CaO19.4231|CA4141	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr5	500335	500472	-	ntar_890	500335	500472	1	500472	500335					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	501180	502937	-	orf19.4232	501180	502937	1	502937	501180	502899	501490	PTH1	orf19.11707|IPF22975.1|IPF11959.2|Contig4-1677_0001|orf6.6613|CA4140|CaO19.11707|CaO19.4232|IPF11959	Putative gluconate transport protein; antigenic during human oral infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	503271	505092	+	orf19.4233	503271	505092	1	503271	505092	503329	504861	THR4	orf19.11708|IPF22974.1|IPF11957.2|Contig4-2131_0002|orf6.6612|CA4139|CaO19.11708|CaO19.4233	Predicted ORF in Assemblies 19, 20 and 21; Gcn4p-regulated; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	504862	506353	-	orf19.4234	504862	506353	1	506353	504862	506321	504930		orf19.11709|IPF22973.1|IPF11954.2|Contig4-2131_0003|orf6.6611|CA4138|CTR86|CaO19.4234|CaO19.11709|IPF11954	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	508074	509533	+	orf19.4235	508074	509533	1	508074	509533	508165	509445	PDE1	orf19.11710|IPF22979.1|IPF7003.2|Contig4-2019_0002|orf6.6610|CA4137|CNA1|CaO19.11710|CaO19.4235	Cyclic nucleotide phosphodiesterase (PDEase), low affinity; has activity toward cGMP and cAMP; not divalent cation-dependent; complements defects of an S. cerevisiae mutant lacking PDEase; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	509525	511482	-	orf19.4236	509525	511482	1	511482	509525	511369	509648	RET2	orf19.11711|IPF22965.1|IPF7005.2|Contig4-2209_0001|orf6.6609|CA4136|CaO19.4236|CaO19.11711	Protein that interacts with Crk1p in the two-hybrid system; potential ortholog of S. cerevisiae Ret2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	511629	513644	-	orf19.4239	511629	513644	2	513644|511664	511749|511629	513644	511629			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	511659	512318	+	ntar_891	511659	512318	1	511659	512318	511859	511999			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	512955	513774	+	ntar_892	512955	513774	1	512955	513774	513643	513768			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	513888	515290	-	orf19.4240	513888	515290	1	515290	513888	515226	514042		orf19.11715|IPF22985.1|IPF7009.2|Contig4-2209_0005|orf6.6605|CA4134|CaO19.11715|CaO19.4240|COS162	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	515350	516067	+	orf19.4241	515350	516067	1	515350	516067	515686	516000		orf19.11716|IPF23019.1|IPF7011.1|Contig4-2769_0007|orf6.6604|CA4133|CaO19.11716|CaO19.4241|IPF7010|IPF7010.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	515746	515941	-	ntar_893	515746	515941	1	515941	515746	515941	515810			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	517649	522072	-	orf19.4242	517649	522072	1	522072	517649	521587	517901	CST20	orf19.11717|STE20|IPF23033.1|IPF7017.1|Contig4-2769_0006|orf6.6603|CA4132|CaO19.11717|CaO19.4242	Protein kinase of Ste20p/p65PAK family, required for wild-type mating efficiency and virulence in a mouse model; Cst20p-Hst7p-Cek1p-Cph1p MAPK pathway regulates some hyphal growth; involved in Cdc42p growth regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	522717	522887	+	ntar_894	522717	522887	1	522717	522887					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	522812	522955	-	ntar_895	522812	522955	1	522955	522812					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	523337	523567	+	ntar_896	523337	523567	1	523337	523567					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	523542	524735	-	orf19.4243	523542	524735	1	524735	523542	524535	523657		orf19.11718|IPF6886.2|IPF7018.3|Contig4-2769_0009|orf6.3981|orf6.6602|YKL090|CA4131|CaO19.4243|IPF6886.3f|IPF6886	Predicted ORF in Assemblies 19, 20 and 21; not essential for viability; similar to S. cerevisiae Cue2p, which is a protein containing two CUE domains that bind ubiquitin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	524847	525401	-	orf19.4244	524847	525401	1	525401	524847	525349	524873		orf19.11719|IPF18247.1|IPF18521.1|orf6.3980|orf6.6601|YIL130|CA6213|CaO19.4244|IPF6886.5f	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	525630	527129	-	orf19.4245	525630	527129	1	527129	525630	527057	525711		orf19.11720|IPF20009.1|IPF19942.1|Contig4-1884_0003|Contig4-1884_0004|orf6.3979|orf6.6600|CA4130|CaO19.4245|IPF20009	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	529534	531624	+	orf19.4246	529534	531624	1	529534	531624	529708	531501		orf19.11721|IPF22957.1|IPF6881.2|Contig4-2928_0003|orf6.3978|orf6.6599|YKR070W|CA2186|CaO19.4246|IPF6881	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ykr070wp; transposon mutation affects filamentous growth; Hog1p-downregulated; shows colony morphology-related gene regulation by Ssn6p; induced during cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	531581	532923	-	orf19.4247	531581	532923	1	532923	531581	532696	531752		orf19.11722|IPF22991.1|IPF6880.2|Contig4-2928_0005|orf6.3977|orf6.6598|CA2185|CaO19.4247|IPF6880	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	533084	534226	+	orf19.4248	533084	534226	1	533084	534226	533248	534153		orf19.11723|IPF6878.1|IPF17590.2|Contig4-1624_0001|Contig4-2928_0007|orf6.3976|orf6.6597|CA4129|CaO19.4248|IPF6878	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	534168	534805	-	orf19.4250	534168	534805	1	534805	534168	534751	534227		orf19.11725|IPF6876.1|IPF17588.1|Contig4-1624_0004|Contig4-2928_0009|orf6.3974|orf6.6595|CA4128|CaO19.4250|IPF6876	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	535344	537678	+	orf19.4251	535344	537678	1	535344	537678	535579	537678		ZCF22|orf19.11726|IPF22947.1|IPF6874.2|Contig4-2928_0011|orf6.3973|orf6.6594|CA2184|CaO19.4251|IPF6874.3f|IPF6874.3	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr5	537613	538663	-	orf19.4252	537613	538663	1	538663	537613	538630	537740		orf19.11727|IPF22993.1|IPF6872.1|Contig4-2928_0012|orf6.3972|CA2183|CaO19.4252|CaO19.11727|IPF6872	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	538764	541400	+	orf19.4253	538764	541400	1	538764	541400	538910	541255		orf19.11728|IPF22943.1|IPF6871.1|Contig4-2928_0013|Contig4-2928_0014|orf6.3971|CA2182|CaO19.11728|CaO19.4253|IPF6871	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	541344	543083	-	orf19.4255	541344	543083	1	543083	541344	542775	541534	ECM331	orf19.11730|orf6.3969|PST1|ECM33|IPF22981.1|IPF6869.2|Contig4-2928_0015|CA2181|CaO19.11730|CaO19.4255	GPI-anchored protein; mainly at plasma membrane, also at cell wall; caspofungin induced; Plc1p-regulated; repressed by Rim101p, Hog1p; colony morphology-related gene regulation by Ssn6p; induced in cyr1 homozygous null mutant yeast-form cel [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	547586	553401	+	orf19.4257	547586	553401	2	547586|548236	547800|553401	547677	553247	INT1	orf19.11733|BUD4|orf6.3968|IPF19580.2|IPF28466.1|Contig4-2319_0007|orf6.1732|orf6.358|CA0665|CaO19.4257|IPF19580.1	Integrin-like protein; role in morphogenesis, adhesion, and mouse cecal colonization and systemic virulence; similar to S. cerevisiae Bud4p (has role in bud site selection); structurally similar to alpha-subunit of human leukocyte integrins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	553732	555164	+	orf19.4258	553732	555164	1	553732	555164	553778	554758		orf19.11734|IPF18911.1|IPF16890.3|Contig4-2595_0003|orf6.1733|orf6.357|CA0666|FIP1|CaO19.4258	Putative protein of unknown function; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	554977	556653	-	orf19.4261	554977	556653	1	556653	554977	556500	555238	TIF5	orf19.11737|IPF15194.3|IPF28461.1|orf6.1736|CA0667|CaO19.4261|CaO19.11737|IPF15194.2	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	556783	557085	+	ntar_897	556783	557085	1	556783	557085					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	556951	557308	-	ntar_898	556951	557308	1	557308	556951					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	557443	559089	-	orf19.4262	557443	559089	1	559089	557443	559089	557647		orf19.11738|IPF22967.1|IPF15191.2|Contig4-2758_0008|orf6.1031|CA0268|JSN1|CaO19.4262|CaO19.11738|PUF2.3f|PUF2.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	559336	560826	-	orf19.4263	559336	560826	1	560826	559336	560499	559336		orf19.11739|IPF22980.1|IPF15189.2|orf6.1032|CA0269|CaO19.4263|CaO19.11739|PUF2.5f|PUF2.exon1	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	562077	562600	+	ntar_899	562077	562600	1	562077	562600					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	562815	564109	+	orf19.4264	562815	564109	1	562815	564109	562920	563825		orf19.11740|IPF9520.1|IPF19069.2|Contig4-2550_0015|orf6.1033|orf6.3493|CA1827|CaO19.11740|CaO19.4264|IPF9520	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	564208	564790	-	ntar_900	564208	564790	1	564790	564208	564722	564483			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	564942	566710	+	orf19.4265	564942	566710	1	564942	566710	565078	566538	UAP1	orf19.11741|YDL103|IPF22969.1|IPF9521.2|Contig4-2550_0010|orf6.3492|CA1826|QRI1|CaO19.11741|CaO19.4265	UDP-N-acetylglucosamine pyrophosphorylase, catalyzes biosynthesis of UDP-N-acetylglucosamine from UTP and N-acetylglucosamine 1-phosphate; functional homolog of S. cerevisiae Qri1p; alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	566565	568047	-	orf19.4266	566565	568047	3	568047|567494|567201	567615|567275|566565	568047	566673	SPR28	orf19.11742|orf19.11743|IPF23010.1|IPF22929.1|IPF23006.1|IPF9524.1|IPF9523.1|IPF9522.1|Contig4-2550_0005|Contig4-2550_0008|Contig4-2550_0009|orf6.3491|orf6.3490|CA1823|orf19.4267|CA1824|IPF9522.53f	Septin; similar to S. cerevisiae meiotic/sporulation septin; mutant has no obvious phenotype; two introns with noncanonical branch site and 5' splice site, respectively; splicing inhibited upon exposure to alpha-factor [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=I]
Ca21chr5	568110	570509	-	orf19.4268	568110	570509	1	570509	568110	570509	568110	UTP13	orf19.11744|IPF22940.1|IPF9525.2|Contig4-2550_0003|orf6.3489|CA1822|CaO19.4268|CaO19.11744|IPF9525	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response; physically interacts with TAP-tagged Nop1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	570718	572572	-	orf19.4269	570718	572572	1	572572	570718	572472	570718		orf19.11745|IPF22964.1|IPF9527.2|Contig4-2550_0001|orf6.3488|CA1821|CaO19.11745|CaO19.4269|IPF9527	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	573069	575543	+	orf19.4270	573069	575543	1	573069	575543	573196	575493		orf19.11746|IPF22942.1|IPF9529.2|orf6.3487|CA1820|CaO19.11746|CaO19.4270|IPF9529	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	575778	576656	+	orf19.4271	575778	576656	1	575778	576656	575995	576300		orf19.11747|orf6.3486|CaO19.11747|CaO19.4271	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	576446	579407	-	orf19.4273	576446	579407	1	579407	576446	579346	576587		orf19.11749|IPF22931.1|IPF16549.2|Contig4-2872_0001|orf6.3484|CA1819|CaO19.11749|CaO19.4273|IPF16549	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	580957	582618	+	orf19.4274	580957	582618	1	580957	582618	580957	582426	PUT1	orf19.11750|IPF22968.1|IPF8739.2|Contig4-2872_0006|orf6.3112|orf6.3483|CA1552|CaO19.4274|IPF8739.1	Alkaline upregulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr5	582504	586237	-	orf19.4275	582504	586237	1	586237	582504	586193	582669	RAD9	orf19.11751|orf19.11752|IPF22941.1|IPF22987.1|IPF8741.1|IPF8742.1|Contig4-2872_0008|orf6.3111|orf6.3110|CA1551|CA1550|orf19.4276|IPF8741.3f	Protein involved in regulation of DNA-damage-induced filamentous growth; putative component of DNA damage checkpoint; ortholog of S. cerevisiae Rad9p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	586564	589123	-	orf19.4278	586564	589123	1	589123	586564	588725	586716		orf19.11754|IPF22952.1|IPF8744.2|Contig4-2872_0009|orf6.3108|CA1549|CaO19.11754|CaO19.4278|IPF8744	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	589276	591903	-	orf19.4279	589276	591903	1	591903	589276	591842	589440	MNN1	orf19.11755|orf6.3107|IPF17287.3|IPF8746.2|Contig4-2872_0014|orf6.5207|CA1548|CaO19.4279|IPF8746	Putative alpha-1,3-mannosyltransferase, a component of mannosyltransferase complex; transcription is negatively regulated by Rim101p; transcription is elevated in chk1 and nik1 homozygous null mutants, but not in the sln1 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	594388	595405	+	orf19.4280	594388	595405	1	594388	595405	594542	595192		orf19.11756|IPF15811.2|IPF8750.2|Contig4-2551_0013|orf6.3106|orf6.5206|CA3067|CaO19.4280|IPF15811	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	595206	597036	-	orf19.4281	595206	597036	1	597036	595206	596396	595503		orf19.11757|IPF22972.1|IPF15813.2|Contig4-2551_0010|orf6.5205|CA3066|CaO19.4281|CaO19.11757|IPF15813	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	597105	598196	-	orf19.4282	597105	598196	1	598196	597105	598160	597123		orf19.11758|IPF19775.1|IPF19820.2|Contig4-2551_0007|orf6.5204|orf6.55|CA3065|CaO19.4282|IPF19775	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	598231	598913	-	ntar_901	598231	598913	1	598913	598231					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	599450	600170	-	ntar_902	599450	600170	1	600170	599450	599844	599662			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	600619	601940	-	orf19.4283	600619	601940	1	601940	600619	601853	600846		orf19.11759|IPF22989.1|IPF2973.2|Contig4-2551_0002|orf6.5203|CA3064|CaO19.11759|CaO19.4283|IPF2973	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	602692	604474	+	orf19.4284	602692	604474	1	602692	604474	602769	604349	BUR2	orf19.11760|IPF2971|IPF22971.1|IPF2971.2|Contig4-3019_0001|orf6.5202|CA3063|SPX63|CaO19.4284|CaO19.11760	Protein with similarity to S. cerevisiae Bur2p, contains a cyclin domain; not required for wild-type hyphal growth, adherence to buccal epithelial cells, or virulence in mouse systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	604631	605857	+	orf19.4286	604631	605857	1	604631	605857	604784	605758		orf19.11762|IPF2968.1|IPF28462.1|Contig4-3019_0004|orf6.5200|CA3062|CaO19.4286|IPF2968	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	605938	607427	+	orf19.4287	605938	607427	1	605938	607427	606065	607180		orf19.11763|IPF2965.2|IPF17863.2|Contig4-3019_0006|Contig4-3019_0008|orf6.172|orf6.5199|CA3061|BZD99|CaO19.4287|IPF2965	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	607200	607583	-	ntar_903	607200	607583	1	607583	607200	607583	607383			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	607530	610522	+	orf19.4288	607530	610522	1	607530	610522	607672	610344	CTA7	orf19.11764|IPF2963.1|IPF28450.1|Contig4-3019_0010|orf6.5198|CA3060|STB4|CaO19.4288|CaO19.11764	Predicted zinc-finger protein of unknown function; activates transcription in 1-hybrid assay in S. cerevisiae; has similarity to S. cerevisiae Stb4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	611238	612455	+	orf19.4290	611238	612455	1	611238	612455	611366	612328	TRR1	orf19.11766|IPF2959.2|IPF28463.1|Contig4-3019_0014|orf6.5196|CA3059|CaO19.4290|CaO19.11766	Putative thioredoxin reductase; upregulated in presence of human neutrophils; regulated by Tsa1p, Tsa1Bp; induced by nitric oxide; peroxide-induced; oxidative stress-induced via Cap1p; fungal-specific (no human/murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	612604	613610	+	orf19.4292	612604	613610	1	612604	613610	612695	613525		orf19.11768|IPF22995.1|IPF2955.2|Contig4-3019_0016|orf6.5194|CA3058|CaO19.4292|CaO19.11768|IPF2955	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	613573	614794	-	orf19.4293	613573	614794	1	614794	613573	614761	613610		orf19.11769|IPF22984.1|IPF2954.2|Contig4-3019_0017|Contig4-3019_0020|orf6.5193|CA3057|CaO19.4293|CaO19.11769|IPF2954	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	614929	616662	+	orf19.4294	614929	616662	1	614929	616662	614957	616624		orf19.11770|IPF22959.1|IPF2953.2|Contig4-3019_0021|orf6.5192|CA3056|CaO19.4294|CYC2|CaO19.11770|IPF2953	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	616498	619795	-	orf19.4295	616498	619795	1	619795	616498	619739	616686		orf19.11771|IPF2951.2|IPF28446.1|Contig4-3019_0023|orf6.5191|CA3055|CaO19.4295|HIR2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	620098	621363	+	orf19.4297	620098	621363	1	620098	621363	620248	621051	CKB2	orf19.11773|CKB22|IPF18389.2|IPF2946.2|Contig4-3019_0024|orf6.4602|orf6.5189|CA2635|CaO19.4297|CaO19.11773	Regulatory subunit of protein kinase CK2 (casein kinase II), beta' subunit [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	621387	622740	+	orf19.4299	621387	622740	1	621387	622740	621387	622586	MSW1	orf19.11775|IPF22983.1|IPF2944.2|Contig4-3019_0025|orf6.4604|CA2636|CaO19.4299|CaO19.11775	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Msw1p, which is mitochondrial tryptophanyl-tRNA synthetase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	622530	622886	-	ntar_904	622530	622886	1	622886	622530					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	623325	626096	+	orf19.4301	623325	626096	1	623325	626096	623550	625994		orf19.11777|IPF22936.1|IPF19954.1|Contig4-3019_0031|Contig4-3019_0032|orf6.4606|CA2637|CaO19.11777|CaO19.4301|IPF19954	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	626046	628040	-	orf19.4304	626046	628040	1	628040	626046	627851	626103	GAP1	orf19.11780|orf6.4609|IPF22960.1|IPF2936.1|GAP3|Contig4-3019_0033|CA2638|CaO19.4304|CaO19.11780	General amino acid permease; antigenic in human, mouse; 10-12 transmembrane regions; regulated by nitrogen source; alkaline, GlcNAc, phagocytosis upregulated; not required for virulence in mouse systemic infection; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	628397	629119	-	orf19.4305	628397	629119	1	629119	628397	629119	628397		orf19.11781|IPF23000.1|IPF2932.1|Contig4-2902_0001|orf6.4610|CA2639|CaO19.11781|CaO19.4305|IPF2932	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	629207	630336	+	orf19.4305.1	629207	630336	2	629207|629436	629366|630336	629207	629716		IPF22928.1|IPF2930.1|Contig4-2902_0003|CA2640|IPF2930	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	629652	630713	-	orf19.4306	629652	630713	1	630713	629652	630575	629763		orf19.11782|IPF22994.1|IPF2929.2|Contig4-2902_0004|orf6.4611|CA2641|CaO19.4306|CaO19.11782|IPF2929	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	630820	631846	+	orf19.4307	630820	631846	1	630820	631846	630820	631698		orf19.11783|IPF22992.1|IPF2927.2|Contig4-2902_0005|Contig4-2902_0006|orf6.4612|CA2642|CaO19.11783|DID2|CaO19.4307|FTI1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	631715	636835	-	orf19.4308	631715	636835	1	636835	631715	636248	631860	HSL1	orf19.11784|IPF23021.1|IPF2926.2|Contig4-2902_0009|orf6.4613|CA2643|CaO19.4308|CaO19.11784	Probable protein kinase, involved in determination of morphology during the cell cycle of both yeast-form cells and hyphae via regulation of Swe1p and Cdc28p; required for full virulence and kidney colonization in mouse systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	637362	637537	-	ntar_905	637362	637537	1	637537	637362					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	637707	638822	+	ntar_906	637707	638822	1	637707	638822	638391	638543			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	638411	640228	-	orf19.4309	638411	640228	1	640228	638411	640030	639005	GRP2	orf19.11785|Contig4-2902_0012|GRE99|IPF18654.2|IPF2918.2|orf6.3162|orf6.4614|CA2644|GRE22|CaO19.4309	Similar to S. cerevisiae Gre2p (methylglyoxal reductase); antigenic in human; regulation associated with azole resistance; induced in core stress response or by oxidative stress (via Cap1p), fluphenazine, benomyl, or fluconazole (long term) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	640753	641235	-	orf19.4310	640753	641235	1	641235	640753	641235	640753		IPF2915.2|IPF28467.1|Contig4-2902_0013|orf6.4615|CaO19.4310	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	641709	642431	+	orf19.4311	641709	642431	1	641709	642431	641794	642249	YNK1	orf19.11786|IPF18653.1|IPF2914.1|Contig4-2902_0014|orf6.3163|orf6.4616|CA2645|CaO19.4311	Nucleoside diphosphate kinase (NDP kinase); homo-hexameric; soluble protein in hyphae; flucytosine induced; biofilm induced; macrophage-induced protein; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	642645	645130	+	orf19.4312	642645	645130	1	642645	645130	642679	644991		orf19.11787|IPF16990.2|IPF2913.2|Contig4-2902_0015|orf6.3164|orf6.4617|CA1588|SPT8|CaO19.4312|CA1589|IPF16988|IPF16988.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	645058	647813	-	orf19.4315	645058	647813	1	647813	645058	647571	645289		orf19.11790|IPF14665.2|IPF17806.3|Contig4-2700_0001|orf6.221|orf6.3167|CA1590|CaO19.4315|IPF14665	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	648153	648286	-	ntar_907	648153	648286	1	648286	648153					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	648411	649944	+	orf19.4316	648411	649944	1	648411	649944	648551	649741		orf19.11791|IPF14663.2|IPF19388.2|Contig4-2700_0002|orf6.222|orf6.3168|CA1591|BBH2|CaO19.4316|IPF14663	Trimethyllysine dioxygenase, the first enzyme in the carnitine biosynthesis pathway; hyphal-induced expression, regulated by Cyr1p, Ras1p, Efg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	649741	650953	-	orf19.4317	649741	650953	1	650953	649741	650942	649827	GRE3	orf19.11792|IPF22982.1|IPF14662.1|IPF14662|Contig4-2700_0003|orf6.3169|CA1592|CaO19.4317|CaO19.11792	Similar to D-xylose reductases; antigenic in murine systemic infection; soluble protein in hyphae; transcriptionally induced by macrophage interaction; transcriptionally induced by Mnl1p under weak acid stress, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	651804	653828	-	orf19.4318	651804	653828	1	653828	651804	653658	651946	MIG1	orf19.11793|IPF22963.1|IPF11048.2|Contig4-2700_0004|orf6.3170|CA1593|CaO19.11793|CaO19.4318	Transcriptional repressor; regulates genes for utilization of carbon sources; Tup1p-dependent and -independent functions; upregulated in biofilm; hyphal downregulated; caspofungin repressed; functional homolog of S. cerevisiae Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	654510	654890	-	orf19.4320	654510	654890	1	654890	654510	654890	654510			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	654609	654881	+	ntar_908	654609	654881	1	654609	654881					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	654971	655423	-	orf19.4321	654971	655423	1	655423	654971	655423	654971		orf19.11796|IPF23015.1|IPF11051.2|Contig4-2700_0008|orf6.3173|CA1594|CaO19.11796|CaO19.4321|IPF11051	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	654987	655277	+	ntar_909	654987	655277	1	654987	655277					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	656835	659610	+	orf19.4322	656835	659610	1	656835	659610	657008	659524	DAP2	orf19.11797|IPF18652.2|IPF11053.2|Contig4-2207_0003|orf6.3174|orf6.3264|CA1660|CaO19.4322	Protein described as dipeptidyl aminopeptidase; transcriptionally regulated during macrophage response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	659554	660260	-	orf19.4323	659554	660260	1	660260	659554	660193	659690		orf19.11798|IPF23009.1|IPF11054.2|Contig4-2207_0002|orf6.3263|CA1659|CaO19.11798|YPT35|CaO19.4323|IPF11054	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	660359	661142	+	orf19.4324	660359	661142	1	660359	661142	660407	660961		orf19.11799|IPF23005.1|IPF19924.1|orf6.3262|CA1658|CaO19.4324|CaO19.11799|IPF19924	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	660951	664647	-	orf19.4325	660951	664647	1	664647	660951	664494	661063		orf19.11800|IPF23040.1|IPF16022.2|Contig4-2180_0004|Contig4-2207_0005|orf6.3261|CA1657|CaO19.11800|CaO19.4325|IPF16022	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	664825	667301	+	orf19.4326	664825	667301	1	664825	667301	664935	666956		orf19.11801|IPF22949.1|IPF16019.2|Contig4-2180_0001|orf6.3260|CA1656|CaO19.11801|SNU66|CaO19.4326|IPF16019	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	667542	667921	-	ntar_910	667542	667921	1	667921	667542	667755	667630			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	667696	671932	+	orf19.4328	667696	671932	1	667696	671932	668063	671677	CCC2	orf19.11803|orf6.3258|IPF23037.1|IPF12705.2|CA1655|CaO19.4328|CaO19.11803	Copper-transporting P-type ATPase of Golgi; required for wild-type iron assimilation (indirect effect via Fet3p); induced by iron starvation, ciclopirox olamine; caspofungin repressed; not required for virulence in mouse systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	672446	674542	+	orf19.4330	672446	674542	1	672446	674542	672470	674542		IPF19738.1|IPF19702.1|Contig4-2329_0011|orf6.3256|orf6.1695|CA0646|CaO19.4330|IPF19702.5f|IPF19702	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	674361	676017	+	orf19.4332	674361	676017	1	674361	676017	674379	675953		orf19.11806|IPF19702.1|IPF19737.2|Contig4-2329_0001|orf6.3254|orf6.1695|CA6283|CaO19.4332|IPF19702.3f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	676508	677230	-	orf19.4334	676508	677230	1	677230	676508	677230	676508	PGA58	orf19.11809|IPF22998.1|IPF19706.1|Contig4-2329_0005|Contig4-2329_0006|orf6.1698|CA0647|CaO19.11809|CaO19.4334|IPF19706	Putative GPI-anchored protein of unknown function; transcription is positively regulated by Tbf1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr5	678122	678368	+	ntar_911	678122	678368	1	678122	678368					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	679406	681214	-	orf19.4335	679406	681214	1	681214	679406	681090	679558	TNA1	orf19.11811|IPF17857.3|IPF11694.2|Contig4-1971_0004|orf6.1676|orf6.729|CA0164|TNA11|CaO19.4335|IPF11694	Putative nicotinic acid transporter; fungal-specific (no human or murine homolog); detected at germ tube plasma membrane by mass spectrometry; transcriptionally induced upon phagocytosis by macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	682952	683869	+	orf19.4336	682952	683869	1	682952	683869	683005	683682	RPS5	orf19.11812|IPF11696.1|IPF28464.1|Contig4-2570_0018|orf6.1675|CA0632|CaO19.11812|CaO19.4336	Predicted ribosomal protein; macrophage/pseudohyphal-induced after 16 h; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	683935	686191	-	orf19.4337	683935	686191	1	686191	683935	686001	684064		orf19.11813|IPF11698.1|IPF11341.2|IPF18701.2|Contig4-2570_0014|Contig4-2570_0016|orf6.1674|orf6.2794|orf6.2795|CA6284|CA0631|orf19.4338|IPF11698.3f	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	687445	688978	+	orf19.4339	687445	688978	1	687445	688978	687547	688866	VPS4	orf19.11814|IPF11700.3|IPF11343.2|Contig4-2570_0009|Contig4-2570_0010|orf6.1673|orf6.2796|CA1340|CaO19.4339	Protein involved in transport from multivesicular body (MVB) to the vacuole; mutation causes decreased SAP secretion and decreased virulence in murine intravenous infection; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	688876	690159	-	orf19.4340	688876	690159	1	690159	688876	690022	689024		orf19.11815|IPF22988.1|IPF11344.1|Contig4-2570_0008|orf6.2797|CA1341|CaO19.4340|CaO19.11815|IPF11344	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	689877	690469	+	ntar_912	689877	690469	1	689877	690469	689877	690176			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	690285	691173	-	orf19.4340.1	690285	691173	2	691173|691016	691091|690285	691099	690642		IPF11349.2|IPF11347.1|Contig4-2570_0003|CA1342|IPF11347	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	691244	693134	+	orf19.4341	691244	693134	1	691244	693134	691336	692784		orf19.11816|IPF18885.1|IPF11353.2|Contig4-2186_0009|orf6.2798|orf6.1849|CDC91|CaO19.4341|CA0739|IPF18885	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	695066	696176	-	ntar_913	695066	696176	1	696176	695066					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	697259	698800	+	orf19.4342	697259	698800	1	697259	698800	697397	698467		orf19.11817|IPF11357.2|IPF14623.2|Contig4-2344_0008|orf6.1848|orf6.2799|CA1344|CaO19.4342|IPF14623	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	699494	705996	-	orf19.4346	699494	705996	1	705996	699494	705913	699638		orf19.11823|IPF19511.2|IPF28465.1|Contig4-2617_0002|orf6.1844|orf6.2802|orf6.394|orf6.3990|orf6.446|CA2192|SEC16|CaO19.4346|CA0737|SEC16.53f.eoc|IPF19510.1|CA0738|SEC16.3f|orf6.1846|IPF14620.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	707622	708497	+	ntar_914	707622	708497	1	707622	708497	707779	708033			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	708703	709318	+	ntar_915	708703	709318	1	708703	709318					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	709445	712297	+	orf19.4347	709445	712297	1	709445	712297	709994	711913		orf19.11824|PRR1|IPF14273.2|IPF19462.2|Contig4-2514_0005|orf6.3991|orf6.50|CA2193|CaO19.4347|IPF14273	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	712524	712700	+	ntar_916	712524	712700	1	712524	712700					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	712811	716820	+	orf19.4348	712811	716820	1	712811	716820	712921	716733		orf19.11825|IPF14271.2|IPF28478.1|Contig4-2514_0001|Contig4-2514_0002|orf6.3992|CA2194|RGR1|CaO19.4348	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	716757	719730	-	orf19.4349	716757	719730	1	719730	716757	719339	716895		orf19.11827|IPF16819.2|IPF28451.1|orf6.3993|orf6.3994|KRE2.3F|CA2195|CaO19.4349|IPF18517|CA2196|IPF18517.5f|IPF18517.1|IPF18517.3f	Protein of unknown function, transcription is repressed in the presence of elevated CO2; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	721017	721558	+	ntar_1412	721017	721558	2	721017|721144	721044|721558					 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	726085	728208	-	orf19.2657	726085	728208	1	728208	726085	728208	726085		orf19.10180|IPF24686.1|IPF16538.3|CaO19.2657|CaO19.10180	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	731670	733492	+	orf19.2655	731670	733492	1	731670	733492	731837	732958	BUB3	orf19.10178|IPF19171.2|IPF10586.2|Contig4-2474_0008|orf6.1509|orf6.722|CA0526|CaO19.10178|CaO19.2655	Protein similar to S. cerevisiae Bub3p, which is a kinetochore checkpoint component; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	734543	736504	+	orf19.2654	734543	736504	1	734543	736504	734722	736380	RMS1	orf19.10177|IPF10588.2|IPF29036.1|Contig4-2474_0006|orf6.3349|orf6.721|CA0161|CaO19.2654|IPF10588.1	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	736908	740365	-	orf19.2653	736908	740365	1	740365	736908	740200	736919		orf19.10176|IPF14652|IPF24706.1|IPF14652.2|Contig4-2474_0003|orf6.3350|CA1721|CaO19.2653|CaO19.10176	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	741779	742464	+	orf19.2652	741779	742464	1	741779	742464	741779	742438	TEF4	orf19.10175|IPF24694.1|IPF16861.2|Contig4-2002_0002|orf6.3351|CA1722|CaO19.2652|CaO19.10175|TEF41	Putative translation elongation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	742827	744318	+	orf19.2651	742827	744318	1	742827	744318	742856	744115	CAM1-1	orf19.10174|IPF24690.1|IPF16860.2|Contig4-2002_0004|orf6.3352|CA1723|CaO19.2651|CAM1|CaO19.10174|TEF4	Putative translation elongation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	744185	744761	-	orf19.2650.1	744185	744761	1	744761	744185	744620	744333		IPF24703.1|IPF18618.1|CA1724|MRP10	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	745031	747658	-	orf19.2650	745031	747658	1	747658	745031	747470	745173		orf19.10173|IPF19008.2|IPF15985.1|Contig4-2161_0002|Contig4-2161_0003|orf6.3353|CA1725|CaO19.2650|IPF15985	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	748618	750154	-	orf19.2649	748618	750154	1	750154	748618	750012	748891	PCL1	orf19.10172|IPF16634.2|IPF29037.1|Contig4-2161_0007|orf6.1258|orf6.3354|CA0384|CaO19.2649	Cyclin homolog; expression induced upon filamentous growth; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	753873	755934	-	orf19.2647	753873	755934	1	755934	753873	755770	754184		ZCF14|orf19.10170|IPF18551.2|IPF13021.1|Contig4-2669_0003|orf6.3356|orf6.3816|orf6.1256|CA1726|CaO19.2647|IPF13021	Putative transcription factor with zinc cluster DNA-binding motif; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	756022	759826	-	orf19.2646	756022	759826	1	759826	756022	759778	756050		ZCF13|orf19.10169|orf6.3817|HAP1|IPF13024.2|IPF29039.1|Contig4-2669_0005|orf6.3357|CA2064|CaO19.2646|IPF13024	Predicted zinc-finger protein of unknown function, not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	760524	760844	+	orf19.2645	760524	760844	1	760524	760844	760524	760844		orf19.10168|IPF24704.1|IPF29040.1|orf6.3818|CaO19.2645|CaO19.10168	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	761928	763319	+	orf19.2644	761928	763319	1	761928	763319	762003	763127	QCR2	orf19.10167|IPF24692.1|IPF6978.2|Contig4-2912_0002|orf6.3819|CA2065|CaO19.2644|CaO19.10167	Protein described as ubiquinol-cytochrome-c reductase; antigenic in human; transcriptionally induced by interaction with macrophage; repressed by nitric oxide; in detergent-resistant membrane fraction (possible lipid raft component) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	763417	764240	+	orf19.2643	763417	764240	1	763417	764240	763528	764001		orf19.10166|IPF24698.1|IPF6977.1|Contig4-2912_0005|orf6.3820|CA2066|RPO26|CaO19.2643|CaO19.10166	Putative protein of unknown function; heterozygous null mutant exhibits resistance to parnafungin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	764049	764788	-	orf19.2642	764049	764788	1	764788	764049	764706	764191		orf19.10165|IPF24696.1|IPF6976.1|Contig4-2912_0006|orf6.3821|CA2067|CaO19.10165|CaO19.2642|IPF6976	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	764856	766407	+	orf19.2641	764856	766407	1	764856	766407	764935	766179	ARP1	orf19.10164|IPF24691.1|IPF6975.2|Contig4-2912_0007|orf6.3822|CA2068|CaO19.10164|CaO19.2641	Protein described as centractin; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	765923	766971	-	orf19.2640	765923	766971	1	766971	765923	766939	766283	FUR1	orf19.10163|IPF24695.1|IPF6973.2|Contig4-2912_0008|orf6.3823|CA2069|CaO19.2640|CaO19.10163	Uracil phosphoribosyltransferase; enzyme of pyrimidine salvage; predicted tetrameric enzyme; mutations are associated with resistance to flucytosine (5-FC) in clinical isolates (clade I); macrophage-induced protein; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	767130	767821	-	orf19.2639.1	767130	767821	3	767821|767689|767396	767776|767467|767130	767784	767257		IPF24685.1|IPF6971.2|Contig4-2912_0010|CA2071|orf19.2639.2|IPF6971|CA2070|IPF6971.3|IPF6972.2|IPF6971.53	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	767978	768788	-	orf19.2639	767978	768788	1	768788	767978	768671	768150		orf19.10162|IPF24697.1|IPF6970.1|Contig4-2912_0012|orf6.3824|CA2072|CaO19.2639|MRPL20|CaO19.10162|IPF6970	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	769641	769734	+	te(uuc)5	769641	769734	2	769641|769700	769677|769734				tE(UUC)5.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	771938	772868	+	orf19.2638	771938	772868	1	771938	772868	772041	772868		orf19.10161|IPF6967.2|IPF18967.2|Contig4-2912_0019|orf6.1459|orf6.3825|CA2073|CaO19.2638|IPF6967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr5	775408	775911	+	ntar_917	775408	775911	1	775408	775911	775495	775710			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	776107	777509	+	ntar_918	776107	777509	1	776107	777509	776249	776377			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	777290	778445	-	orf19.2637	777290	778445	1	778445	777290	778356	777343		orf19.10160|IPF24693.1|IPF6961.1|Contig4-2912_0024|orf6.1458|CA0490|PER1|CaO19.2637|CaO19.10160|COS161	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	778647	780292	-	orf19.6654	778647	780292	1	780292	778647	780239	778743		orf19.10159|IPF24699.1|IPF6960.2|IPF2275.2|Contig4-2912_0026|orf6.1457|orf6.6763|CA0489|CA4262|orf19.2636|CaO19.6654|FMP422|IPF2275.5eoc|IPF2275	Predicted membrane transporter, member of the L-amino acid transporter-3 (LAT3) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	780561	782503	-	orf19.6656	780561	782503	1	782503	780561	782254	780689	DUR3	IPF2277.1|Contig4-3038_0003|orf6.6765|CA4263|CaO19.6656|IPF2277	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; alkaline downregulated; amphotericin B induced; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	782589	784422	-	orf19.6658	782589	784422	1	784422	782589	784369	782738		orf6.6767|CA4264|CaO19.6658|IPF2280|IPF2280.1	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	785493	787414	+	orf19.6659	785493	787414	1	785493	787414	785575	787305	GAP6	IPF2282.1|GAP5|Contig4-3038_0008|orf6.6768|CA4265|CaO19.6659|GAP22	Putative general amino acid permease; Plc1p-regulated; Gcn4p-regulated; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	787684	790056	-	orf19.6660	787684	790056	1	790056	787684	789259	787718		IPF2283.1|Contig4-3038_0009|orf6.6769|CA4266|CaO19.6660|IPF2283	Putative protein of unknown function; mRNA binds to She3p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	788909	789285	+	ntar_919	788909	789285	1	788909	789285	788994	789143			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	790433	790669	+	ntar_920	790433	790669	1	790433	790669					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	791043	792218	+	orf19.6661	791043	792218	1	791043	792218	791043	792218		orf6.6770|CA4267|CaO19.6661|IPF2286|IPF2286.1	[NOT TRANSCRIBED?] Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	792326	793088	-	orf19.6662	792326	793088	1	793088	792326	793045	792500		IPF2287.1|Contig4-3038_0011|orf6.6771|CA4268|CaO19.6662|IPF2287	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	793466	794186	-	orf19.6663	793466	794186	2	794186|793784	794138|793466	793783	793466	RPS25B	IPF2288.1|RPS25|Contig4-3038_0012|orf6.6772|CA4269|CaO19.6663	Predicted ribosomal protein; macrophage/pseudohyphal-induced after 16 h; downregulated upon phagocytosis by murine macrophage; transcription is positively regulated by Tbf1p; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGD orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	794439	797057	+	orf19.6665	794439	797057	1	794439	797057	794500	796920		IPF2295.2|Contig4-3038_0014|Contig4-3038_0016|orf6.6774|CA4270|CaO19.6665|NIUP2|NUP2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	797382	798059	+	orf19.6667	797382	798059	1	797382	798059	797458	797964		IPF2297.1|Contig4-3038_0018|orf6.6776|CA4271|CaO19.6667|IPF2297|SAP30	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	798292	799011	+	orf19.6668	798292	799011	1	798292	799011	798397	798906		IPF2299.2|Contig4-3038_0020|orf6.6777|CA4272|CaO19.6668|CUE1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	798902	800509	-	orf19.6670	798902	800509	1	800509	798902	800389	799007	CAC2	IPF2301.1|Contig4-3038_0022|orf6.6779|CA4273|CaO19.6670	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	801008	802876	+	orf19.6671	801008	802876	1	801008	802876	801111	802847	LAP4	IPF2303.2|Contig4-3038_0025|orf6.6780|CA4274|LAP5|CaO19.6671|LAP42	Protein similar to aminopeptidase I; mutation confers hypersensitivity to amphotericin B; transcriptionally regulated during macrophage response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	803095	804880	+	orf19.6672	803095	804880	1	803095	804880	803173	804639		IPF2305.2|Contig4-3038_0027|orf6.6781|CA4275|MDJ1|CaO19.6672	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	805327	807242	+	orf19.6673	805327	807242	1	805327	807242	805379	807067	HEX1	IPF2308.1|Contig4-2760_0001|orf6.6782|CA4276|CaO19.6673	Beta-N-acetylhexosaminidase (beta-N-acetylglucosaminidase/chitobiase), highly glycosylated enzyme that is secreted to the periplasm and to the culture medium; required for full virulence; may have role in scavenging for carbon or nitrogen [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	807614	808995	+	orf19.6674	807614	808995	1	807614	808995	807724	808722	BTS1	IPF2309.1|Contig4-2760_0002|Contig4-2760_0003|orf6.6783|CA4277|CaO19.6674	Decreased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	808440	809297	-	ntar_921	808440	809297	1	809297	808440	809297	808719			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	809408	810741	+	orf19.6676	809408	810741	1	809408	810741	809408	810307		IPF2311.2|Contig4-2760_0004|orf6.6785|orf6.6791|CA4279|CaO19.6676|DPH51	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	810519	811706	-	orf19.6678	810519	811706	1	811706	810519	811706	810585		IPF2313.1|Contig4-2628_0003|orf6.6787|CA4280|AES4|CaO19.6678|IFJ5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	811943	812284	-	ntar_922	811943	812284	1	812284	811943					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	812331	812561	+	ntar_923	812331	812561	1	812331	812561					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	813286	814610	-	orf19.6679	813286	814610	1	814610	813286	814416	813556		IPF2314.1|Contig4-2628_0002|orf6.6788|CA4281|CaO19.6679|ALD98|IPF2314	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	815509	816179	+	ntar_924	815509	816179	1	815509	816179	815689	815964			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	815915	816045	-	ntar_925	815915	816045	1	816045	815915					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	816336	819242	+	orf19.6680	816336	819242	1	816336	819242	816610	818973	FGR27	IPF2319.1|Contig4-2760_0008|orf6.6789|CA4282|CaO19.6680|IPF2319	Putative transcription factor with zinc cluster DNA-binding motif; lacks an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	819209	819479	-	ntar_926	819209	819479	1	819479	819209					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	819790	821205	+	orf19.6681	819790	821205	1	819790	821205	819927	821171		IPF2321.2|Contig4-2760_0006|orf6.6790|CA4283|AES5|CaO19.6681|IFJ4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	821099	822235	-	orf19.1124.2	821099	822235	1	822235	821099	822235	821336		IPF26215.1|IPF2323.3|IPF2322.2|CA4284|orf19.6682	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	822427	822701	+	ntar_927	822427	822701	1	822427	822701					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	822454	823488	-	orf19.1124	822454	823488	1	823488	822454	823432	822548		orf19.8722|IPF26195.1|IPF2326.2|orf6.1199|CA0361|CaO19.8722|CaO19.1124|IPF2326	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	823390	823564	+	ntar_928	823390	823564	1	823390	823564					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	823514	823867	-	orf19.1123	823514	823867	1	823867	823514	823867	823514		orf19.8721|IPF26211.1|IPF29575.1|orf6.1198|CaO19.8721|CaO19.1123	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	824264	825106	+	orf19.1122	824264	825106	1	824264	825106	824264	825106		orf19.8720|IPF2328.2|IPF13870.2|Contig4-1915_0004|orf6.1197|orf6.3474|CA0360|HWH1|CaO19.1122|IPF2328	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	825497	826537	+	orf19.1121	825497	826537	1	825497	826537	825621	826442		orf19.8719|IPF2329.1|IPF13871.1|Contig4-1915_0003|Contig4-1995_0007|Contig4-1995_0008|orf6.1196|orf6.3473|CA1813|HWH2|CaO19.1121|IPF2329	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	829324	830274	+	orf19.1120	829324	830274	1	829324	830274	829537	829962	FAV2	orf19.8718|IPF26203.1|IPF13879.2|Contig4-1995_0001|orf6.3472|CA1812|CaO19.1120|IPF13879	Induced by mating factor in MTLa/MTLa opaque cells; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; filament induced; regulated by Nrg1p, Rfg1p, Tup1p; possibly spurious ORF (AWG prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	830497	833640	-	orf19.1119	830497	833640	1	833640	830497	833547	830668	MTR10	orf19.8717|IPF13881.3|IPF6321.2|orf6.3471|orf6.487|orf6.488|CA1811|CaO19.1119	Putative importin, member of a family of fungal-specific nuclear importins; transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	833875	835174	-	orf19.1117	833875	835174	1	835174	833875	835092	833953		orf19.8714|IPF19255.2|IPF6323.2|Contig4-2766_0017|orf6.3469|orf6.485|CA1810|FDH98|CaO19.1117|FDH2	Predicted ORF in Assemblies 19, 20 and 21; similar to Candida boidinii formate dehydrogenase; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	836020	837007	-	orf19.1116	836020	837007	1	837007	836020	836896	836270		orf19.8713|IPF26198.1|IPF6325.2|Contig4-2766_0014|orf6.3468|CA1809|CaO19.1116|CaO19.8713|IPF6325	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	837223	837389	-	ntar_929	837223	837389	1	837389	837223					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	837564	838445	+	orf19.1115	837564	838445	1	837564	838445	837615	838256	GUK1	orf19.8712|IPF26196.1|IPF6326.2|Contig4-2766_0012|orf6.3467|CA1808|CaO19.8712|CaO19.1115	Putative guanylate kinase; identified in extracts from biofilm and planktonic cells; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	838451	839343	+	orf19.1114	838451	839343	2	838451|838755	838637|839343	838594	839178		orf19.8711|IPF26204.1|IPF6328.2|Contig4-2766_0010|Contig4-2766_0011|orf6.3466|CA1807|IPF6328	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	839276	840183	-	orf19.1113	839276	840183	1	840183	839276	840136	839369		orf19.8710|IPF26197.1|IPF6329.2|Contig4-2766_0009|orf6.3465|CA1806|CaO19.8710|CaO19.1113|IPF6329	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	840521	842930	-	orf19.1112	840521	842930	1	842930	840521	842903	840609	BUD7	orf19.8709|IPF26191.1|IPF6332.2|Contig4-2766_0004|Contig4-2766_0006|orf6.3464|CA1805|CaO19.1112|CaO19.8709|IPF6332	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	843191	843993	-	orf19.1111	843191	843993	1	843993	843191	843951	843253		orf19.8708|IPF18669.1|IPF6333.3|Contig4-2766_0002|orf6.2987|orf6.3463|CA1804|CaO19.1111|TAF9|TAF17|IPF6333.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	844079	845230	+	orf19.1110	844079	845230	1	844079	845230	844144	845136		orf19.8707|IPF6335.2|IPF6334.3|Contig4-2815_0022|Contig4-2815_0023|orf6.2986|CA1462|THI80|CaO19.1110	Thiamine pyrophosphokinase, phosphorylates thiamine to produce the coenzyme thiamine pyrophosphate (thiamine diphosphate); active as a homodimer [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	845419	846098	+	orf19.1109	845419	846098	1	845419	846098	845545	845937		orf19.8706|IPF26205.1|IPF6338.1|Contig4-2815_0021|orf6.2985|CA1461|CaO19.1109|CaO19.8706|IPF6338	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	846250	846995	+	orf19.1108	846250	846995	1	846250	846995	846299	846907	HAM1	orf19.8705|IPF26200.1|IPF6339.1|Contig4-2815_0019|orf6.2984|CA1460|CaO19.1108|CaO19.8705	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	846870	847745	-	orf19.1107	846870	847745	1	847745	846870	847685	847077		orf19.8704|IPF26199.1|IPF6340.2|Contig4-2815_0018|orf6.2983|CA1459|CaO19.8704|CaO19.1107|IPF6340	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	848338	848567	+	ntar_930	848338	848567	1	848338	848567	848422	848550			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	848594	850948	-	orf19.1106	848594	850948	1	850948	848594	850948	848594		orf19.8703|IPF26190.1|IPF6342.1|Contig4-2815_0016|Contig4-2815_0017|orf6.2982|CA1458|CaO19.8703|CaO19.1106|IPF6342	Predicted ORF in Assemblies 19, 20 and 21; shows Mob2p-dependent hyphal regulation; fluconazole-induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	855473	855730	-	orf19.1105.3	855473	855730	1	855730	855473	855730	855473		IPF26207.1|IPF20047.1|Contig4-2815_0006|orf6.2981	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	856534	857905	+	orf19.1105.2	856534	857905	1	856534	857905	856605	856859	PGA56	IPF17002.3|IPF15957.2|Contig4-2815_0003|CSU51|CA0171|IPF15957	Regulator of sorbose utilization; putative GPI-anchor; predicted helix-loop helix domain; hyphal induced; induced during cell wall regeneration; shows colony morphology-related gene regulation by Ssn6p; transcription activated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	857655	858178	-	orf19.1105	857655	858178	1	858178	857655	858178	857705		orf19.8701|IPF26202.1|IPF15959.2|Contig4-2815_0001|orf6.753|CA0170|CaO19.1105|CaO19.8701|IPF15959	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	858281	859210	-	orf19.3220	858281	859210	1	859210	858281	859146	858541		orf19.10731|IPF24101.1|IPF14536.2|Contig4-2889_0006|orf6.3201|CA1617|CaO19.3220|CaO19.10731|IPF14536|IPF14536.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	859422	861837	-	orf19.3219	859422	861837	1	861837	859422	861382	859577		orf19.10730|IPF24094.1|IPF14538.2|Contig4-2205_0004|Contig4-2205_0005|orf6.3200|CA1616|CaO19.3219|CaO19.10730|IPF14538	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	862376	862662	+	ntar_931	862376	862662	1	862376	862662					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	863505	865243	-	orf19.3218	863505	865243	1	865243	863505	865191	863725		orf19.10729|IPF14540|IPF24097.1|IPF14540.2|Contig4-2205_0008|orf6.3199|CA1615|CaO19.3218|CaO19.10729	Putative multidrug resistance protein; upregulated by Efg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	868310	871435	+	orf19.3216	868310	871435	1	868310	871435	868715	871219		orf19.10728|orf6.243|IPF18645.1|IPF12592.3|Contig4-2220_0003|orf6.3198|CA1614|CaO19.3216|IPF18645	Similar to Rab GTPase activators [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	871374	871612	-	ntar_932	871374	871612	1	871612	871374					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	871896	873211	+	orf19.3215	871896	873211	1	871896	873211	872183	872572		orf19.10727|IPF24104.1|IPF19735.1|Contig4-1643_0001|Contig4-1643_0002|orf6.3197|CA1613|CaO19.10727|CaO19.3215|IPF19735	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	873029	873588	-	ntar_933	873029	873588	1	873588	873029	873588	873415			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	873713	875294	+	orf19.3214	873713	875294	1	873713	875294	873713	875197		orf19.10726|IPF24098.1|IPF12814.2|Contig4-2443_0006|orf6.3196|CA1612|AES7|CaO19.10726|CaO19.3214|IFJ6	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	874447	874658	-	ntar_934	874447	874658	1	874658	874447					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	876228	879074	+	orf19.3213	876228	879074	1	876228	879074	876524	879022		orf19.10725|IPF24092.1|IPF12819.3|Contig4-2443_0003|orf6.3195|orf6.495|orf6.847|CA0094|CaO19.3213|IPF12819|IPF12819.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	879327	881130	+	orf19.3212	879327	881130	1	879327	881130	879385	881061	MID1	orf19.10724|IPF12820.2|IPF19250.2|Contig4-2443_0001|orf6.496|orf6.848|CA0203|CaO19.3212	Putative stretch-activated Ca2+ channel of the high affinity calcium uptake system; role in thigmotropism; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain with CDR1 and CDR2 overexpression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	881230	882539	+	orf19.3211	881230	882539	2	881230|881404	881332|882539	881301	882415	RCF3	orf19.10723|IPF24099.1|IPF12401.3|Contig4-2463_0002|orf6.1701|orf6.849|CA0649|RFC3|CaO19.3211|IPF12401.2	Transcription is induced upon filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	882414	883072	-	orf19.3210	882414	883072	1	883072	882414	883072	882434		orf19.10722|IPF24100.1|IPF12399.2|Contig4-2463_0004|orf6.1700|CA0648|CaO19.10722|CaO19.3210|IPF12399	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	885950	886218	-	ntar_935	885950	886218	1	886218	885950					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	886290	886786	+	ntar_936	886290	886786	1	886290	886786					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	889368	889682	-	orf19.3209	889368	889682	1	889682	889368	889682	889368	FGR42	IPF24103.1|IPF28845.1|Contig4-2463_0016|orf6.1699|CaO19.3209	[NOT TRANSCRIBED?] Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	889613	890103	+	ntar_937	889613	890103	1	889613	890103					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	889976	890109	-	ntar_938	889976	890109	1	890109	889976					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	890324	890833	+	ntar_939	890324	890833	1	890324	890833	890586	890762			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	891209	892893	+	orf19.1287	891209	892893	1	891209	892893	891567	892709		orf19.8874|IPF26046.1|IPF10595.1|orf6.4238|CA2362|CaO19.8874|CaO19.1287|IPF10595	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	896484	896840	-	orf19.1286	896484	896840	1	896840	896484	896840	896484		orf19.8873|IPF26049.1|IPF29513.1|orf6.4239|CaO19.8873|CaO19.1286	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	898628	898949	+	ntar_940	898628	898949	1	898628	898949					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	899327	902135	+	orf19.1285	899327	902135	1	899327	902135	899327	902122		orf19.8872|IPF26042.1|IPF10590.2|orf6.4240|CA2363|CaO19.8872|CaO19.1285|IPF10590	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	902059	909145	-	orf19.1283	902059	909145	1	909145	902059	909145	902168	MEC1	orf19.8870|IPF19757.1|IPF29511.1|Contig4-2808_0008|Contig4-2808_0009|Contig4-2808_0011|orf6.4242|CA2364|CaO19.1283	Protein described as cell cycle checkpoint protein; RNA abundance regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr5	909205	910181	-	orf19.1282	909205	910181	1	910181	909205	909921	909613	CKS1	orf19.8869|IPF26050.1|IPF10371.2|Contig4-2808_0007|orf6.4243|CA2365|CaO19.8869|CaO19.1282	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	910478	911593	-	orf19.1281	910478	911593	1	911593	910478	911547	910882		orf19.8868|IPF26047.1|IPF10373.1|Contig4-2808_0006|orf6.4244|CA2366|CaO19.1281|CWC25|CaO19.8868|IPF10373	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	911695	912620	-	orf19.1280	911695	912620	1	912620	911695	912410	912081	SUI1	orf19.8867|IPF10374.1|IPF29514.1|Contig4-2808_0003|orf6.4245|CA2367|CaO19.1280|CaO19.8867	Putative translation initiation factor; flucytosine induced; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	913787	915427	+	orf19.1279	913787	915427	1	913787	915427	913853	915208	CDS1	orf19.8866|IPF26045.1|IPF16312.2|Contig4-2808_0002|orf6.874|CA0213|CaO19.8866|CaO19.1279	Protein similar to S. cerevisiae Cds1p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	916681	918469	+	orf19.3893	916681	918469	1	916681	918469	916885	918405	SCW11	orf19.11374|orf6.2346|IPF23274.1|IPF15862.2|CA1053|SCW11.3eoc	Cell wall protein; transcription is decreased in mutant lacking ACE2; downregulated in core caspofungin response; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	918379	919530	-	orf19.3894	918379	919530	1	919530	918379	919520	918498		orf19.11375|IPF23270.1|IPF15861.1|Contig4-2459_0001|orf6.2345|CA1052|IOX1|CaO19.3894|IPF15861	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	919668	921748	-	orf19.3895	919668	921748	1	921748	919668	921556	919805	CHT2	orf19.11376|orf6.2344|IPF19719.2|IPF15860.2|Contig4-2459_0002|CA1051|CaO19.3895	Chitinase, required for normal filamentous growth; mRNA binds to She3p and is localized to buds of yeast-form cells and hyphal tips; downregulated in core caspofungin response; induced in yeast-form cells; Cyr1p-, Efg1p-, pH-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	924397	926012	+	orf19.3897	924397	926012	1	924397	926012	924687	925949		orf19.11378|IPF23260.1|IPF19897.1|Contig4-2263_0011|orf6.2342|CA1050|CaO19.11378|CaO19.3897|IPF19897	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	926458	927359	-	orf19.3898	926458	927359	1	927359	926458	927296	926613		orf19.11379|IPF23297.1|IPF15393.2|Contig4-2263_0009|orf6.2341|CA1049|TLG1|CaO19.3898|CaO19.11379	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	926615	926999	+	ntar_941	926615	926999	1	926615	926999	926615	926785			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	927456	928114	+	orf19.3899	927456	928114	1	927456	928114	927539	927925	SDC1	orf19.11380|IPF18393.2|IPF15394.1|Contig4-2263_0007|orf6.2340|CA1048|CaO19.3899|IPF15394|CA3028|IPF18393|IPF18393.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	928149	930007	+	orf19.3900	928149	930007	1	928149	930007	928268	929875		orf19.11381|IPF20126.1|IPF20071.1|Contig4-2263_0006|orf6.2339|orf6.5148|CA3027|UGO1|CaO19.3900|IPF20126	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	930330	932012	+	orf19.3901	930330	932012	1	930330	932012	930439	931956		orf19.11382|IPF11499.2|IPF28558.1|Contig4-2263_0001|Contig4-2263_0003|orf6.5147|CA3026|CaO19.3901|SOX2|CaO19.11382|IFZ1|IPF11499.repeat1	Putative benzene desulfurase; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	930417	930659	-	ntar_942	930417	930659	1	930659	930417	930641	930417			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	930607	931248	-	ntar_943	930607	931248	1	931248	930607	930852	930607			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	931365	931798	-	ntar_944	931365	931798	1	931798	931365	931798	931673			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	933709	934850	+	orf19.3902	933709	934850	1	933709	934850	933782	934528		orf19.11383|IPF23291.1|IPF11503.1|Contig4-2296_0005|orf6.5146|CA3025|CaO19.3902|CaO19.11383|IPF11503	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	936301	936888	+	orf19.3903	936301	936888	1	936301	936888	936301	936888		orf19.11384|IPF23309.1|IPF11506.2|Contig4-2296_0001|orf6.5145|CA3024|CaO19.3903|CaO19.11384|IPF11506	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	937242	938012	-	orf19.3904	937242	938012	1	938012	937242	938012	937242		orf19.11385|IPF23281.1|IPF11508.2|orf6.5144|CA3023|CaO19.11385|CaO19.3904|IPF11508	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	939322	939963	+	orf19.3905	939322	939963	1	939322	939963	939322	939963		orf19.11386|IPF23298.1|IPF17642.2|Contig4-1931_0001|orf6.5143|CA3022|CaO19.3905|CaO19.11386|IPF17642	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	940701	941291	+	orf19.3906	940701	941291	1	940701	941291	940701	941291		orf19.11387|IPF23302.1|IPF17640.2|orf6.5142|CA3021|CaO19.11387|CaO19.3906|IPF17640	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	942355	942666	-	orf19.3907	942355	942666	1	942666	942355	942666	942355		orf19.11388|IPF23361.1|IPF28591.1|orf6.5141|CaO19.3907|CaO19.11388	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	943043	943657	+	orf19.3908	943043	943657	1	943043	943657	943043	943657		orf19.11389|IPF23305.1|IPF15492.2|Contig4-2027_0003|orf6.5140|CA3020|CaO19.11389|CaO19.3908|IPF15492	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	944280	945558	+	orf19.3910	944280	945558	1	944280	945558	944280	945521		orf19.11391|IPF23262.1|IPF15494.2|Contig4-2817_0009|orf6.5138|CA3019|CaO19.3910|RNY12|CaO19.11391|IPF15494	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr5	945576	947417	-	orf19.3911	945576	947417	1	947417	945576	947362	946010	SAH1	orf19.11392|IPF23243.1|IPF10018.2|Contig4-2730_0002|orf6.5137|CA3018|CaO19.11392|CaO19.3911	Protein described as S-adenosyl-L-homocysteine hydrolase; predicted enzyme of sulfur amino acid metabolism; antigenic in human; biofilm-, alkaline-, fluconazole-induced expression; Gcn4p-regulated; amino acid starvation (3-AT) repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	947610	950128	-	orf19.3912	947610	950128	1	950128	947610	949897	947849	GLN3	orf19.11393|IPF10021.2|IPF28549.1|Contig4-2730_0003|orf6.5136|CA3017|CaO19.3912|CaO19.11393|IPF10021	GATA transcription factor involved in regulation of filamentous growth induced by nitrogen starvation; regulates transcription of Mep2p ammonium permease; regulated by Gcn2p and Gcn4p; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	951897	953923	-	orf19.3914	951897	953923	1	953923	951897	953387	952095		orf19.11396|IPF10027.2|IPF28563.1|Contig4-2194_0001|Contig4-2730_0010|orf6.5133|CA3016|CaO19.11396|CaO19.3914|IPF10027	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	954065	955939	-	orf19.3915	954065	955939	1	955939	954065	955631	954174		orf19.11397|IPF10029.2|IPF18505.2|Contig4-2730_0012|orf6.4061|orf6.5132|CA2239|CaO19.3915|IPF10029.5eoc|CA3015|IPF10029	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-induced; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	956013	958075	+	orf19.3916	956013	958075	1	956013	958075	956373	957956		orf19.11398|orf19.11399|IPF23300.1|IPF12695.2|Contig4-2398_0001|Contig4-2730_0015|orf6.4060|orf6.4059|CA2238|CA2237|orf19.3917|IPF10032.5f|IPF10032.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	958000	960570	-	orf19.3919	958000	960570	1	960570	958000	960282	958171		orf19.11401|IPF23216.1|IPF12694.2|Contig4-2398_0003|orf6.4057|CA2236|LPF25|CaO19.11401|CaO19.3919|IFA23	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	960657	961304	+	orf19.3919.1	960657	961304	1	960657	961304	960781	961050			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	961465	962493	+	orf19.3920	961465	962493	1	961465	962493	961504	962403		orf19.11402|IPF19135.2|IPF12689.1|Contig4-2398_0006|Contig4-2398_0008|orf6.4056|CA2235|MPD1|CaO19.3920	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	962378	963297	-	orf19.3921	962378	963297	1	963297	962378	963291	962440		orf19.11403|IPF12688.2|IPF28566.1|Contig4-2398_0009|orf6.4055|orf6.824|CA0195|CaO19.3921|IPF12688	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	963378	964334	-	orf19.3922	963378	964334	1	964334	963378	964315	963452		orf19.11404|IPF16228.2|IPF28565.1|Contig4-2398_0010|orf6.4054|orf6.823|CA0194|SDT1|CaO19.3922|IPF16228	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	964546	965110	+	ntar_945	964546	965110	1	964546	965110	964657	964785			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	965156	965875	-	orf19.3923	965156	965875	1	965875	965156	965828	965202	PGA37	orf19.11405|IPF16226.2|IPF10922.2|Contig4-1606_0001|Contig4-1924_0002|orf6.4053|orf6.822|CA2234|CaO19.3923|IPF10922	Putative GPI-anchored protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	966839	968192	-	orf19.3924	966839	968192	1	968192	966839	968171	966936		orf19.11406|IPF10925.3|IPF10924.2|Contig4-2817_0014|orf6.4052|CA2233|CaO19.3924|AES3|CaO19.11406|IFJ3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	968454	968610	-	ntar_946	968454	968610	1	968610	968454					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	968812	969173	-	ntar_947	968812	969173	1	969173	968812					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	969897	970689	-	orf19.3925	969897	970689	1	970689	969897	970682	970227		orf19.11407|IPF23304.1|IPF10929.1|Contig4-2817_0011|orf6.4051|CA2232|CaO19.3925|CaO19.11407|IPF10929	Putative protein of unknown function, transcription is activated in the presence of elevated CO2; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	971526	972946	+	orf19.3926	971526	972946	1	971526	972946	971643	972842		orf19.11408|IPF23264.1|IPF10934.2|Contig4-2817_0009|orf6.4050|CA2231|RNY11|CaO19.3926|CaO19.11408|IPF10934	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	972853	974295	-	orf19.3928	972853	974295	1	974295	972853	974251	973109		orf19.11410|IPF23263.1|IPF10936.2|Contig4-2817_0008|orf6.4048|CA2230|CaO19.3928|CaO19.11410|IPF10936	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	974551	975788	+	orf19.3929	974551	975788	1	974551	975788	974703	975740		orf19.11411|IPF14603.2|IPF28564.1|Contig4-2817_0007|orf6.1917|orf6.4047|CA0785|CaO19.3929|IPF14603|IPF14603.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	975529	976799	-	orf19.3930	975529	976799	2	976799|976664	976734|975529	976772	975762	YUH2	orf19.11412|IPF23280.1|IPF14602.1|Contig4-2817_0006|orf6.1916|CA0784|CaO19.3930|UCT99|YUH1|CaO19.11412|YUH1.3	Predicted ORF in Assemblies 19, 20 and 21; described as similar to ubiquitin carboxyl-terminal hydrolases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	976998	978180	-	orf19.3931	976998	978180	1	978180	976998	977986	977075	SFC1	orf19.11413|IPF23279.1|IPF14601.2|Contig4-2817_0005|orf6.1915|CA0783|CaO19.11413|CaO19.3931|ACR1	Putative acyltransferase; alkaline upregulated; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	979125	979427	-	orf19.3931.1	979125	979427	1	979427	979125					[NOT TRANSCRIBED?] Pseudogene; added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	979462	979644	-	orf19.3931.2	979462	979644	1	979644	979462	979644	979462			[NOT TRANSCRIBED?] ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	979789	980836	-	orf19.3932	979789	980836	1	980836	979789	980773	979946		orf19.11414|IPF16253.2|IPF28567.1|Contig4-2817_0002|orf6.1914|CA0782|CaO19.3932|CaO19.11414|IPF16253	Predicted ORF in Assemblies 19, 20 and 21; induced in core caspofungin response; increased expression observed in ssr1 homozygous null mutant; induced by nitric oxide in yhb1 mutant; protein detected by mass spec in stationary phase culture [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	981211	981480	-	orf19.3932.1	981211	981480	1	981480	981211	981480	981211			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	981760	982913	-	orf19.3934	981760	982913	1	982913	981760	982845	981892	CAR1	orf19.11416|IPF16256.2|IPF10187.1|Contig4-2929_0002|orf6.1912|orf6.2297|CaO19.3934|CA1024|CA0781|CAR1.3eoc|IPF16256.1	Transcription is regulated by Nrg1p, Mig1p, and Tup1p; shows colony morphology-related gene regulation by Ssn6p; alkaline upregulated; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	983153	983455	+	orf19.3935	983153	983455	1	983153	983455	983153	983455		orf19.11417|IPF23364.1|IPF28593.1|orf6.2298|CaO19.3935	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	983939	987786	+	orf19.3936	983939	987786	1	983939	987786	984182	987670		orf19.11418|IPF23353.1|IPF10184.2|Contig4-2929_0005|Contig4-2929_0006|orf6.2299|CA1025|CaO19.3936|IPF10184	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorouracil (5-FU); induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	987867	989160	+	orf19.3937	987867	989160	1	987867	989160	987898	989079		orf19.11419|IPF10824.3|IPF19645.1|Contig4-2929_0008|orf6.2300|orf6.3224|CA1026|TIP41.5f|IPF19645.exon1|IPF19646.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	989269	990304	+	orf19.3938	989269	990304	1	989269	990304	989309	990097		orf19.11420|IPF10823.1|IPF10181.1|Contig4-2929_0009|orf6.2301|orf6.3225|CA1632|RSM26|CaO19.3938|IPF10181	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	990052	991096	-	orf19.3940	990052	991096	1	991096	990052	991075	990173		orf19.11422|IPF10822.1|IPF10180.1|Contig4-2929_0011|orf6.2303|orf6.3227|CA1633|CaO19.3940|IPF10180	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	991162	992324	+	orf19.3939	991162	992324	1	991162	992324	991305	992213		orf19.11421|IPF10820.1|IPF10179.1|Contig4-2929_0012|orf6.2302|orf6.3226|CA1634|CaO19.3939|IPF10179	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	992234	992648	-	orf19.3940.1	992234	992648	1	992648	992234			CUP1	orf19.11422.1	Metallothionein, involved in copper resistance; transcription is induced by copper [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	993622	995597	-	orf19.3941	993622	995597	1	995597	993622	995477	993756	URA7	orf19.11423|IPF23233.1|IPF10815.2|Contig4-2929_0016|orf6.3228|CA1635|CaO19.3941|CaO19.11423	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	996112	996786	-	orf19.3942	996112	996786	1	996786	996112	996764	996174		orf19.11424|IPF23299.1|IPF20086.1|Contig4-2929_0018|orf6.3229|CA1636|CaO19.3942|CaO19.11424|IPF20086	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	996868	997862	-	orf19.3942.1	996868	997862	2	997862|997423	997795|996868	997796	997147	RPL43A	IPF23373.1|IPF20087.1|Contig4-2929_0019|CA1637|RPL43A.3	Downregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	998102	1000717	-	orf19.3944	998102	1000717	1	1000717	998102	1000623	998281	GRR1	orf19.11426|IPF23206.1|IPF14608.2|Contig4-1767_0001|Contig4-1767_0003|Contig4-2929_0020|orf6.3231|CA1638|CaO19.3944|CaO19.11426	Protein involved in the negative control of pseudohyphal growth; ortholog of S. cerevisiae Grr1p, which is an F-box protein component of the SCF ubiquitin-ligase complex required for cell cycle progression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1002110	1003962	+	orf19.3945	1002110	1003962	1	1002110	1003962	1002133	1003563		orf19.11427|IPF23250.1|IPF13799.3|Contig4-1800_0002|orf6.2412|CA1089|CaO19.3945|IPF13799|IPF13799.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1003598	1004811	-	orf19.3946	1003598	1004811	1	1004811	1003598	1004698	1003703		orf19.11428|IPF23271.1|IPF13798.1|Contig4-1800_0004|orf6.2413|CA1090|CaO19.11428|COX18|CaO19.3946	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1004789	1005447	+	orf19.3947	1004789	1005447	1	1004789	1005447	1004931	1005269		orf19.11429|IPF18764.2|IPF13796.2|Contig4-1800_0006|orf6.2414|CA1091|SPT4|CaO19.11429|CaO19.3947	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1005316	1009632	-	orf19.3949	1005316	1009632	1	1009632	1005316	1009339	1005395		orf19.11431|IPF23338.1|IPF13795.2|orf6.2416|CA1092|CaO19.11431|YTA7|CaO19.3949	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1010130	1012073	-	orf19.3950	1010130	1012073	1	1012073	1010130	1011998	1010265	MSM1	orf19.11432|IPF23232.1|IPF19722.1|orf6.2417|CA1093|CaO19.3950|CaO19.11432	Mitochondrial methionyl-tRNA synthetase (MetRS); functionally complements methionine auxotrophy of an E. coli MetRS mutant; transcription is regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1012096	1013066	-	orf19.3951	1012096	1013066	1	1013066	1012096	1012945	1012190	TIP1	orf19.11433|IPF18796.2|IPF16770.2|Contig4-1802_0003|orf6.2274|orf6.2418|CA1094|YIP1|CaO19.3951	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1013397	1015262	+	orf19.3952	1013397	1015262	1	1013397	1015262	1013452	1015059		orf19.11434|IPF19895.1|IPF19901.2|Contig4-2292_0006|orf6.2275|orf6.2419|orf6.928|CA1011|CaO19.3952|SRP101	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1015142	1015483	-	ntar_948	1015142	1015483	1	1015483	1015142	1015387	1015142			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1015577	1019170	+	orf19.3954	1015577	1019170	1	1015577	1019170	1015820	1019032		orf19.11436|IPF14208.2|IPF19402.2|Contig4-2292_0003|orf6.181|orf6.2277|CA1012|PSD2|CaO19.3954|PSD2.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1018996	1019557	-	orf19.3954.1	1018996	1019557	1	1019557	1018996	1019362	1019123			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1020075	1022485	-	orf19.3955	1020075	1022485	1	1022485	1020075	1022448	1020202	MES1	orf19.11437|IPF15550.2|IPF28546.1|Contig4-1832_0002|orf6.182|orf6.2278|CA1014|CaO19.3955	Cytoplasmic methionyl-tRNA synthetase (MetRS); has zinc-binding motif; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1022541	1024167	+	orf19.3956	1022541	1024167	1	1022541	1024167	1022725	1024077		orf19.11438|IPF15547.2|IPF28562.1|Contig4-1832_0003|orf6.1120|orf6.2279|CA1015|CaO19.3956|IPF15547|IPF15547.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1023966	1025338	-	orf19.3957	1023966	1025338	1	1025338	1023966	1025233	1024403		orf19.11439|IPF23282.1|IPF5793.2|orf6.1119|CA0318|FOL2|CaO19.3957	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1025619	1029565	-	orf19.3959	1025619	1029565	1	1029565	1025619	1029517	1025693	SSD1	orf19.11441|IPF18942.2|IPF5791.2|Contig4-3081_0004|orf6.1117|orf6.1554|CA0317|CaO19.3959	Protein with role in resistance to host antimicrobial peptides; virulence role in murine infection; functional homolog of S. cerevisiae Ssd1p, which suppresses various mutant phenotypes; constitutively expressed and not cell-cycle regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1029737	1030133	-	ntar_949	1029737	1030133	1	1030133	1029737					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1030390	1030685	+	ntar_950	1030390	1030685	1	1030390	1030685					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1030786	1030986	+	ntar_951	1030786	1030986	1	1030786	1030986					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1030954	1032528	-	orf19.3960	1030954	1032528	1	1032528	1030954	1032504	1031080	HYS2	orf19.11442|IPF23248.1|IPF5785.1|Contig4-3081_0006|orf6.1553|CA0555|CaO19.11442|CaO19.3960|CDC1	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1032656	1034453	-	orf19.3962	1032656	1034453	1	1034453	1032656	1034421	1032724	HAS1	orf19.11444|IPF5784.3|IPF28555.1|Contig4-3081_0007|Contig4-3081_0009|orf6.1551|orf6.3509|CA0554|CaO19.3962|IPF5784.2	Functional homolog of S. cerevisiae Has1p, which is a nucleolar protein of the DEAD-box ATP-dependent RNA helicase family that is involved in biogenesis of the ribosome, particularly the small (40S) subunit; caspofungin-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1035141	1035213	+	ta(agc)5	1035141	1035213	1	1035141	1035213				tA(AGC)5.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	1035347	1036534	+	orf19.3963	1035347	1036534	1	1035347	1036534	1035482	1036357		orf19.11445|IPF23275.1|IPF5777.1|Contig4-3081_0010|orf6.3508|CA1838|CaO19.11445|FMP10|CaO19.3963|IPF5777	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1036656	1038181	+	orf19.3964	1036656	1038181	1	1036656	1038181	1036689	1038089	ASH2	orf19.11446|IPF23249.1|IPF5776.1|Contig4-3081_0012|orf6.3507|CA1837|CaO19.3964|CaO19.11446|IPF5776|BRE2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1037529	1038840	-	orf19.3965	1037529	1038840	1	1038840	1037529	1038824	1038084		orf19.11447|IPF18603.2|IPF5773.2|Contig4-3081_0013|orf6.3506|CA1836|CaO19.11447|CaO19.3965|IPF5773	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1039038	1040699	-	ntar_952	1039038	1040699	1	1040699	1039038	1039930	1039682			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1039173	1040687	+	orf19.3966	1039173	1040687	1	1039173	1040687	1039173	1040687	CRH12	orf19.11448|IPF23240.1|IPF5772.2|Contig4-3081_0014|orf6.3505|CRH2|CA1835|CRH1|CaO19.11448|CaO19.3966	Putative cell wall protein, member of the CRH family; transcription is regulated by Nrg1p and Tup1p; alkaline upregulated by Rim101p; repressed during cell wall regeneration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	1041040	1044322	+	orf19.3967	1041040	1044322	1	1041040	1044322	1041235	1044198	PFK1	orf19.11449|IPF23197.1|IPF5769.1|Contig4-3081_0016|orf6.3504|CA1834|CaO19.11449|CaO19.3967	Alpha subunit of phosphofructokinase (PFK), which is Pfk1p, Pfk2p heteromultimer; PFK is activated by fructose 2,6-bisphosphate or AMP, inhibited by ATP; activity reduced on hyphal induction; phagocytosis-downregulated; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1051721	1052032	+	orf19.3968	1051721	1052032	1	1051721	1052032	1051721	1052032		orf19.11451|IPF23347.1|IPF28582.1|orf6.2745|CaO19.3968|CaO19.11451	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	1053870	1056014	+	orf19.3969	1053870	1056014	1	1053870	1056014	1053870	1056014		SFL2|orf19.11452|IPF8627.2|IPF28547.1|Contig4-3081_0036|orf6.2746|CA1309|IPF8627	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr5	1058007	1058968	-	orf19.3970	1058007	1058968	1	1058968	1058007	1058879	1058136		orf19.11453|IPF23293.1|IPF13616.2|Contig4-3081_0042|orf6.5646|CA3395|CaO19.3970|CaO19.11453|IPF13616	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1059025	1060084	+	orf19.3971	1059025	1060084	1	1059025	1060084	1059086	1059844		orf19.11454|IPF23290.1|IPF13617.2|Contig4-3081_0043|orf6.5647|CA3396|CaO19.11454|CaO19.3971|IPF13617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	1059527	1060700	-	orf19.3972	1059527	1060700	2	1060700|1060406	1060505|1059527	1060529	1060009		orf19.11455|IPF23326.1|IPF13618.1|Contig4-3081_0045|orf6.5648|CA3397|CaO19.11455|GOT1|CaO19.3972|IPF13618	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1060248	1060587	+	ntar_953	1060248	1060587	1	1060248	1060587					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1061016	1062058	+	orf19.3973	1061016	1062058	1	1061016	1062058	1061136	1061921		orf19.11456|IPF23285.1|IPF13621.2|Contig4-3081_0047|orf6.5649|CA3398|CaO19.11456|CaO19.3973|IPF13621	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1062037	1063991	-	orf19.3974	1062037	1063991	1	1063991	1062037	1063882	1062095	PUT2	orf19.11457|IPF23228.1|IPF13622.2|Contig4-3081_0050|orf6.5650|CA3399|CaO19.11457|CaO19.3974	Alkaline upregulated; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1064178	1065459	-	orf19.3976	1064178	1065459	1	1065459	1064178	1065391	1064270		orf19.11459|IPF23268.1|IPF13623.2|Contig4-3081_0052|orf6.5652|CA3400|JNM1|CaO19.3976|CaO19.11459	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1065498	1066791	-	orf19.3977	1065498	1066791	1	1066791	1065498	1066749	1065640		orf19.11460|IPF23267.1|IPF8652.2|orf6.5653|CA3401|CaO19.3977|CaO19.11460|IPF8652	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1066924	1068103	+	orf19.3978	1066924	1068103	1	1066924	1068103	1066976	1067689		orf19.11461|IPF23296.1|IPF8651.2|Contig4-1327_0001|orf6.5654|CA3402|CaO19.3978|CaO19.11461|IPF8651	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1067719	1073719	-	orf19.3980	1067719	1073719	1	1073719	1067719	1073719	1067930		orf19.11463|IPF23311.1|IPF8650.2|Contig4-1327_0003|orf6.5656|CA3403|CaO19.11463|SLH1|CaO19.3980|IPF8650	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr5	1074239	1076005	-	orf19.3981	1074239	1076005	1	1076005	1074239	1076005	1074239	MAL31	orf19.11464|IPF23226.1|IPF8647.2|orf6.5657|CA3404|CaO19.3981|CaO19.11464	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; alkaline upregulated [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr5	1078944	1080692	+	orf19.3982	1078944	1080692	1	1078944	1080692	1078944	1080692		orf19.11465|IPF23227.1|IPF8644.2|orf6.5658|CA3405|MAL32|CaO19.11465|CaO19.3982|IPF8644	Maltase; induced during growth on sucrose; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr5	1080802	1083156	-	orf19.3983	1080802	1083156	1	1083156	1080802	1083059	1080849		orf19.11466|IPF23209.1|IPF9711.2|Contig4-2652_0007|orf6.5659|CA3406|CaO19.3983|CaO19.11466|IPF9711	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1083544	1083676	-	ntar_954	1083544	1083676	1	1083676	1083544					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1084318	1084655	+	ntar_955	1084318	1084655	1	1084318	1084655					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1084548	1084913	-	ntar_956	1084548	1084913	1	1084913	1084548	1084913	1084770			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1084795	1085323	+	ntar_957	1084795	1085323	1	1084795	1085323	1085043	1085177			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1086139	1086417	+	ntar_958	1086139	1086417	1	1086139	1086417	1086198	1086326			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1087139	1087395	+	ntar_959	1087139	1087395	1	1087139	1087395					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1087815	1088301	+	ntar_960	1087815	1088301	1	1087815	1088301					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1088526	1091148	+	orf19.3984	1088526	1091148	1	1088526	1091148	1088560	1091088		orf19.11467|IPF19142.1|IPF18339.2|orf6.5660|orf6.7397|orf6.794|CA0184|IPF19142	Predicted ORF in Assemblies 19, 20 and 21; induced in core caspofungin response; increased expression observed in an ssr1 homozygous null mutant; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr5	1090199	1090404	-	ntar_961	1090199	1090404	1	1090404	1090199					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1091620	1094318	-	orf19.3986	1091620	1094318	1	1094318	1091620	1094318	1091736		PPR1|orf19.11469|IPF19144.2|IPF9661.2|Contig4-2740_0001|orf6.7399|orf6.793|CA4758|CaO19.3986	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Ppr1p, which is a transcription factor involved in the regulation of uracil biosynthesis genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr5	1095702	1097429	+	orf19.3988	1095702	1097429	1	1095702	1097429	1095702	1097429		orf19.11471|IPF23230.1|IPF9655.1|Contig4-2740_0007|orf6.7401|CA4759|CaO19.11471|CaO19.3988|IPF9655	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	1096937	1097574	-	ntar_962	1096937	1097574	1	1097574	1096937					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1097663	1098363	+	orf19.3990	1097663	1098363	1	1097663	1098363	1097705	1098196		orf19.11473|IPF23301.1|IPF9652.2|Contig4-2740_0008|orf6.7403|CA4760|CaO19.11473|CaO19.3990|IPF9652	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1098206	1100731	-	orf19.3991	1098206	1100731	1	1100731	1098206	1100514	1098265		orf19.11474|IPF23210.1|IPF9651.2|Contig4-2740_0011|Contig4-2740_0012|orf6.7404|CA4761|CaO19.3991|CaO19.11474|IPF9650	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1100742	1101714	+	orf19.3992	1100742	1101714	1	1100742	1101714	1101243	1101665		orf19.11475|orf6.7405|CaO19.11475|CaO19.3992	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1101126	1102477	-	orf19.3994	1101126	1102477	1	1102477	1101126	1102477	1101287		orf19.11477|IPF23265.1|IPF9647.2|Contig4-2740_0015|Contig4-2740_0016|Contig4-2740_0017|orf6.7407|CA4762|OST3|CaO19.3994|CaO19.11477|IPF9647	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1102520	1104693	-	orf19.3995	1102520	1104693	1	1104693	1102520	1104673	1102520	RIM13	orf19.11478|IPF23213.1|IPF9645.2|Contig4-2740_0018|orf6.7408|CA4763|CaO19.11478|CaO19.3995|IPF9645	Probable protease involved in the pH response pathway, likely to mediate activation of the transcription factor Rim101p via C-terminal cleavage; required for alkaline pH-induced hyphal growth and for normal levels of chlamydospore formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1104773	1106355	+	orf19.3996	1104773	1106355	1	1104773	1106355	1104781	1106229		orf19.11479|IPF23255.1|IPF19803.1|Contig4-2740_0019|orf6.7409|CA4764|CaO19.3996|GPI10	Putative mannosyltransferase; similar to S. cerevisiae Gpi10p; has HKEXRF motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1106223	1106516	-	ntar_963	1106223	1106516	1	1106516	1106223					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1107463	1109082	+	orf19.3997	1107463	1109082	1	1107463	1109082	1107682	1108986	ADH1	orf19.11480|ADH|CAD|IPF13058.3|IPF17060.2|Contig4-2534_0002|Contig4-2534_0003|orf6.106|orf6.7410|CA4765|CaO19.3997	Alcohol dehydrogenase; at yeast-form but not hyphal cell surface; soluble in hyphae; immunogenic in human or mouse; complements S. cerevisiae adh1 adh2 adh3 mutation; regulated by growth phase, carbon source; fluconazole-, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1109025	1109688	-	orf19.3998	1109025	1109688	1	1109688	1109025	1109616	1109131		orf19.11481|IPF19441.2|IPF13056.2|Contig4-2534_0004|orf6.105|orf6.7411|CA4766|CaO19.3998|IPF13056	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1109694	1112533	+	orf19.3999	1109694	1112533	1	1109694	1112533	1109886	1112189		orf19.11482|IPF23207.1|IPF13054.2|Contig4-2534_0009|orf6.7412|CA4767|CaO19.11482|CaO19.3999|IPF13054	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1118111	1121418	+	orf19.4000	1118111	1121418	1	1118111	1121418	1119088	1121145		FIL2|orf19.11483|IPF23219.1|IPF9385.1|Contig4-2616_0006|Contig4-2616_0007|orf6.7413|CA4768|PHO2|CaO19.4000|CaO19.11483|IPF9385	Putative homeodomain transcription factor; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1121567	1122910	+	orf19.4001	1121567	1122910	1	1121567	1122910	1121602	1122867		orf19.11484|IPF23254.1|IPF9384.2|Contig4-2616_0008|orf6.7414|CA4769|MSS2|CaO19.11484|CaO19.4001|IPF9384	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1122765	1124834	-	orf19.4002	1122765	1124834	2	1124834|1124527	1124624|1122765	1124644	1122956	DUN1	orf19.11485|IPF23241.1|IPF9382.2|Contig4-2616_0009|orf6.7415|CA4770|IPF9382.3	Protein similar to S. cerevisiae Dun1p, which is a serine-threonine protein kinase involved in DNA damage cell-cycle checkpoint; induced under Cdc5p depletion [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1125076	1127599	-	orf19.4003	1125076	1127599	1	1127599	1125076	1127570	1125216	TIP20	orf19.11486|orf6.7416|IPF23205.1|IPF3336.2|Contig4-2616_0011|CA4771|CaO19.11486|CaO19.4003|IPF3336	Protein interacting with Sec20p, possibly involved in retrograde transport between the Golgi and the endoplasmic reticulum; similar to S. cerevisiae Tip20p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1127786	1129477	+	orf19.4004	1127786	1129477	1	1127786	1129477	1127833	1129422	CCT3	orf19.11487|IPF23237.1|IPF3339.1|Contig4-3094_0053|orf6.7417|CA4772|CaO19.11487|CaO19.4004	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1129342	1130246	-	orf19.4005	1129342	1130246	1	1130246	1129342	1130202	1129477		orf19.11488|IPF23294.1|IPF3340.2|Contig4-3094_0052|orf6.7418|YDR196|CA4773|CaO19.11488|CaO19.4005|IPF3340	Protein likely to be essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1130303	1131495	+	orf19.4006	1130303	1131495	1	1130303	1131495	1130323	1131381		orf19.11489|IPF23269.1|IPF3341.2|Contig4-3094_0050|orf6.7419|CA4774|CaO19.11489|CaO19.4006|IPF3341	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1130869	1132688	-	orf19.4007	1130869	1132688	1	1132688	1130869	1132677	1131376		orf19.11490|IPF23257.1|IPF3342.1|Contig4-3094_0048|orf6.7420|CA4775|CaO19.4007|CaO19.11490|IPF3342	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1132723	1133459	-	orf19.4009	1132723	1133459	1	1133459	1132723	1133376	1132855	CNB1	orf19.11492|IPF23308.1|IPF3344.2|Contig4-3094_0046|orf6.7422|CA4776|CaO19.4009|CaO19.11492	Regulatory subunit of calcineurin B (Ca[2+]-calmodulin-regulated S/T protein phosphatase); required for wild-type resistance to fluconazole or to SDS; micafungin is fungicidal to null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1133780	1136105	+	orf19.4010	1133780	1136105	1	1133780	1136105	1133879	1135975	PAN3	orf19.11493|IPF23217.1|IPF3345.2|Contig4-3094_0045|orf6.7423|CA4777|CaO19.11493|CaO19.4010	Protein not essential for viability; similar to S. cerevisiae Pan3p, which is a subunit of an RNAse complex that controls poly(A) tail length [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1137207	1138430	+	orf19.4011	1137207	1138430	1	1137207	1138430	1137207	1138430		orf19.11494|IPF23261.1|IPF3348.1|Contig4-3094_0043|orf6.7424|CA4778|CaO19.4011|AES1|CaO19.11494|IFJ1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	1139119	1140384	+	orf19.4012	1139119	1140384	1	1139119	1140384	1139318	1140232	PCL5	orf19.11495|IPF23278.1|IPF3351.1|Contig4-3094_0041|orf6.7425|CA4779|CaO19.4012|CaO19.11495|IPF3351	Protein similar to S. cerevisiae Pcl5p and other cyclins for Pho85p kinase; Gcn4p-induced; suppresses toxicity of C. albicans Gcn4p overproduction in S. cerevisiae via increased Pho85p-dependent phosphorylation and degradation of Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1140202	1141682	-	orf19.4013	1140202	1141682	1	1141682	1140202	1141648	1140299		orf19.11496|IPF23252.1|IPF3352.2|Contig4-3094_0040|orf6.7426|CA4780|CaO19.11496|CaO19.4013|IPF3352	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1141911	1143390	+	orf19.4014	1141911	1143390	1	1141911	1143390	1141942	1143390		orf19.11497|IPF3355|IPF23246.1|IPF3355.2|Contig4-3094_0038|orf6.7427|CA4781|CaO19.4014|CaO19.11497	Predicted ORF in Assemblies 19, 20 and 21; described as similar to S. cerevisiae Cdc1p; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1143550	1144967	+	orf19.4015	1143550	1144967	1	1143550	1144967	1143585	1144874	CAG1	orf19.11498|IPF23259.1|IPF3356.2|Contig4-3094_0037|orf6.7428|GPA1|CA4782|CaO19.4015|CaO19.11498|GBA1	Alpha subunit of heterotrimeric G protein; positive role in mating pheromone response; more mRNA in opaque than white cells; transcriptionally repressed by MTLa1p-MTLalpha2p complex; regulated by hemoglobin-responsive Hbr1p via MTL genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1144899	1146340	-	orf19.4016	1144899	1146340	1	1146340	1144899	1146284	1144965		orf19.11499|IPF23251.1|IPF3358.2|Contig4-3094_0036|orf6.7429|CA4783|CaO19.4016|COR1|CaO19.11499|IPF3358	Predicted ORF in Assemblies 19, 20 and 21; amphotericin B induced; repressed by nitric oxide; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1146553	1147497	-	orf19.4017	1146553	1147497	1	1147497	1146553	1147497	1146553		orf19.11500|IPF23276.1|IPF3359.2|Contig4-3094_0034|orf6.7430|CA4784|CaO19.11500|CaO19.4017|IPF3359	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr5	1147641	1148463	-	orf19.4018	1147641	1148463	1	1148463	1147641	1148441	1147686		orf19.11501|IPF23288.1|IPF3361.2|Contig4-3094_0032|orf6.7431|CA4785|CaO19.4018|RSM7|CaO19.11501|IPF3361	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1148550	1149338	+	orf19.4019	1148550	1149338	1	1148550	1149338	1148592	1149212		orf19.11502|IPF23286.1|IPF3362.2|Contig4-3094_0031|orf6.7432|CA4786|CaO19.11502|CaO19.4019|IPF3362	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1149220	1150180	-	orf19.4021	1149220	1150180	1	1150180	1149220	1150168	1149257		orf19.11504|IPF23277.1|IPF3364.1|Contig4-3094_0029|orf6.7434|CA4787|CaO19.4021|CaO19.11504|IPF3364	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1150261	1150833	-	orf19.4022	1150261	1150833	1	1150833	1150261	1150803	1150309	SDH4	orf19.11505|orf6.7435|IPF23310.1|IPF3365.1|Contig4-3094_0028|CA4788|CaO19.4022|CaO19.11505|SDH42	Succinate dehydrogenase, membrane subunit; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1150874	1151429	-	orf19.4023	1150874	1151429	1	1151429	1150874	1151322	1150975	MRP2	orf19.11506|IPF23339.1|IPF3366.1|Contig4-3094_0027|orf6.7436|CA4789|CaO19.11506|CaO19.4023|IPF3366	Protein similar to S. cerevisiae Mrp2p, which is a component of the small subunit of the mitochondrial ribosome; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1151699	1152497	+	orf19.4024	1151699	1152497	1	1151699	1152497	1151737	1152450	RIB5	orf19.11507|IPF23284.1|IPF3367.1|Contig4-3094_0026|orf6.7437|CA4790|CaO19.4024|CaO19.11507|IPF3367	Putative riboflavin synthase; fungal-specific (no human or murine homolog); farnesol-downregulated; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1152573	1153289	+	orf19.4025	1152573	1153289	1	1152573	1153289	1152595	1153185	PRE1	orf19.11508|IPF23307.1|IPF3370.2|Contig4-3094_0024|orf6.7438|CA4791|CaO19.11508|CaO19.4025|IPF3370	Upregulated by Rim101p at acid pH; flucytosine induced; amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1153238	1154134	-	orf19.4026	1153238	1154134	1	1154134	1153238	1154134	1153238	HIS1	orf19.11509|IPF23273.1|IPF3372.2|Contig4-3094_0023|orf6.7439|CA4792|CaO19.11509|CaO19.4026	ATP phosphoribosyl transferase; enzyme of histidine biosynthesis; fungal-specific (no human, murine homolog); upregulated in biofilm; acid upregulated/alkaline downregulated by Rim101p; regulated by Gcn2p, Gcn4p; strain CA9 is a his1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1154210	1155527	-	orf19.4028	1154210	1155527	1	1155527	1154210	1155352	1154366		orf19.11511|IPF23272.1|IPF3375.1|Contig4-3094_0021|orf6.7441|CA4793|RER2|CaO19.11511|CaO19.4028|IPF3375	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1155662	1157079	+	orf19.4029	1155662	1157079	1	1155662	1157079	1155795	1157042		orf19.11512|IPF23256.1|IPF3377.1|Contig4-3094_0019|orf6.7442|CA4794|CaO19.4029|SQT1|CaO19.11512	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1157144	1158626	+	orf19.4030	1157144	1158626	1	1157144	1158626	1157155	1158513		orf19.11513|IPF23253.1|IPF3378.2|Contig4-3094_0017|orf6.7443|CA4795|PRI1|CaO19.4030|CaO19.11513|IPF3378	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1158471	1161251	-	orf19.4031	1158471	1161251	1	1161251	1158471	1161237	1158544		orf19.11514|IPF23202.1|IPF3380.2|Contig4-3094_0016|orf6.7444|CA4796|CaO19.4031|CaO19.11514|IPF3380	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1161384	1164407	-	orf19.4033	1161384	1164407	1	1164407	1161384	1164407	1161417	PRP22	orf19.11516|IPF23374.1|IPF8801.2|Contig4-3094_0013|orf6.7446|CA4797|CaO19.4033|CaO19.11516	Protein described as an RNA-dependent ATPase; induced upon adherence to polystyrene; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1164537	1166024	+	orf19.4032	1164537	1166024	1	1164537	1166024	1164565	1165941	RPN5	orf19.11515|orf19.11517|IPF23283.1|IPF8798.1|Contig4-3094_0010|Contig4-3094_0011|orf6.7445|orf6.7447|CA4798|CA4799|orf19.4034|RPN5.3f	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1165873	1167357	-	orf19.4035	1165873	1167357	1	1167357	1165873	1167315	1165960	PGA4	orf19.11518|IPF23247.1|IPF8796.1|Contig4-3094_0009|orf6.7448|CA4800|GAS1|CaO19.4035|CaO19.11518|IPF8796	GPI-anchored cell surface protein, similar to S. cerevisiae Gas1p; fungal-specific (no human or murine homolog); transcription is upregulated in RHE model of oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1168027	1169523	+	orf19.4036	1168027	1169523	1	1168027	1169523	1168153	1169469	APM1	orf19.11519|IPF23258.1|IPF8795.1|Contig4-3094_0006|orf6.7449|CA4801|CaO19.11519|CaO19.4036	Phosphorylated protein similar to S. cerevisiae Apm1, which is involved in vesicle transport; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1169370	1171287	-	orf19.4040	1169370	1171287	1	1171287	1169370	1171286	1169517	ILV3	orf19.11523|IPF7211.3|IPF8790.2|Contig4-3094_0005|orf6.4407|orf6.7453|CA4802|CaO19.4040	Putative dihydroxyacid dehydratase; fungal-specific (no human or murine homolog); upregulated in biofilm; S. cerevisiae ortholog is Gcn4p regulated; repressed by nitric oxide; macrophage-induced protein; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1172076	1172705	+	orf19.4041	1172076	1172705	1	1172076	1172705	1172145	1172669	PEX4	orf19.11524|IPF8784.1|IPF7214.1|Contig4-3094_0004|orf6.4408|orf6.7454|CA4803|CaO19.4041	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1172664	1174958	-	orf19.4043	1172664	1174958	1	1174958	1172664	1174952	1172694		orf19.11525|IPF7217.2|IPF8783.3|Contig4-3094_0003|orf6.4409|orf6.7456|CA2489|CaO19.4043|IPF7217	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr5	1175087	1175905	-	orf19.4044	1175087	1175905	1	1175905	1175087	1175905	1175225	MUM2	orf19.11526|IPF23292.1|IPF7220.2|Contig4-3094_0002|orf6.4410|CA2490|CaO19.4044|CaO19.11526	Protein similar to S. cerevisiae Mum2p; transcription is induced in response to alpha pheromone in SpiderM medium; transcription is regulated by Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1175163	1175940	+	ntar_964	1175163	1175940	1	1175163	1175940	1175697	1175882			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr5	1175955	1176490	-	orf19.4046	1175955	1176490	1	1176490	1175955	1176416	1175955		orf19.11528|IPF23317.1|IPF7221.2|Contig4-3094_0001|orf6.4412|CA2491|CaO19.11528|CaO19.4046|IPF7221	Putative transcription factor containing a Zn(2)-Cys(6) binuclear cluster; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1176415	1178294	+	orf19.4045	1176415	1178294	1	1176415	1178294	1176415	1178253	EST1	orf19.11527|orf6.4411|IPF23224.1|IPF7224.2|Contig4-2715_0009|CA2492|CaO19.11527|CaO19.4045|IPF7224	Telomerase subunit; allosteric activator of catalytic activity, but not required for catalytic activity; has TPR domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1178331	1179481	+	orf19.4048	1178331	1179481	1	1178331	1179481	1178347	1179459	DES1	orf19.11530|IPF23266.1|IPF7227.2|Contig4-2715_0008|orf6.4414|CA2493|CaO19.11530|CaO19.4048|IPF7227	Putative delta-4 sphingolipid desaturase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1179320	1180961	-	orf19.4051	1179320	1180961	1	1180961	1179320	1180961	1179456	HTS1	orf19.11533|IPF23244.1|IPF7230.2|Contig4-2715_0007|orf6.4417|CA2494|CaO19.11533|CaO19.4051	Putative tRNA-His synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr5	1181018	1181652	+	ntar_1414	1181018	1181652	2	1181018|1181315	1181134|1181652					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr5	1182169	1182927	-	orf19.4054	1182169	1182927	1	1182927	1182169	1182927	1182169	CTA24	orf19.11536|IPF23289.1|IPF7233.2|Contig4-2715_0005|orf6.1799|orf6.4420|CA2495|TLO12|CaO19.4054|CTA213|CaO19.11536	Putative transcriptional activator, downregulated by Efg1p; member of a family of telomere-proximal genes; transcription is upregulated in an RHE model of oral candidiasis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr5	1188461	1189117	-	orf19.4055	1188461	1189117	1	1189117	1188461	1189117	1188806		orf19.11537|IPF23360.1|IPF3468.2|Contig4-2210_0004|orf6.4421|YBR075W|CA2496|CaO19.4055|CaO19.11537|IPF3468	Protein similar to S. cerevisiae Ybr075wp; transposon mutation affects filamentous growth; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	2	346	+	orf19.6339	2	346	1	2	346	30	233	NRG2	IPF27436.1|orf6.5532	Protein similar to S. cerevisiae Nrg2p transcription factor, which regulates invasive growth in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	2916	3595	-	ntar_965	2916	3595	1	3595	2916					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	3622	4008	+	orf19.6338	3622	4008	1	3622	4008	3622	4008		IPF27434.1|Contig4-2210_0003|Contig4-3079_0032|orf6.5531|CaO19.6338	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	5545	6334	+	orf19.6337	5545	6334	1	5545	6334	5545	6075	TLO13	IPF5711.1|IPF5712.1|Contig4-3048_0015|CA3298|TLO13b|CTA28.5f	Member of a family of telomere-proximal genes of unknown function; may be spliced in vivo; overlaps orf19.6337.1, which is a region annotated as blocked reading frame [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	6934	7044	+	tl(caa)5	6934	7044	2	6934|7001	6972|7044					tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	7282	9942	-	orf19.6336	7282	9942	1	9942	7282	9900	7282	PGA25	orf19.7542|IPF5723.1|IPF5720.1|Contig4-3048_0011|orf6.5522|orf6.5529|CA3295|CaO19.6336|IPF5723|CA3296|IPF5723.exon2|IPF5723.exon1	Putative GPI-anchored protein of unknown function; fluconazole-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr6	7644	7901	+	ntar_966	7644	7901	1	7644	7901					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	8392	10275	+	ntar_967	8392	10275	1	8392	10275	8450	8851			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	10212	11445	-	orf19.6329	10212	11445	1	11445	10212	11351	10266		IPF5723.1|IPF5720.1|Contig4-2795_0003|Contig4-2795_0004|orf6.5522|orf6.5529|CA3295|CaO19.6329|IPF5723|CA3296|IPF5723.exon2|IPF5723.exon1	Predicted ORF in Assemblies 19, 20 and 21; opaque-specific transcription; fluconazole-downregulated; greater mRNA abundance in a cyr1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	11535	12026	+	orf19.6328	11535	12026	1	11535	12026	11586	11954		IPF5725.1|Contig4-2795_0007|orf6.5521|CA3294|CaO19.6328|IPF5725	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	11802	12557	-	orf19.6327	11802	12557	1	12557	11802	12549	11956	HET1	IPF5726.1|Contig4-2795_0008|orf6.5520|CA3293|CaO19.6327|IPF5726	Putative sphingomyelin transfer protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	12616	13439	-	orf19.6326	12616	13439	1	13439	12616	13439	12654		IPF5729.1|Contig4-2795_0009|orf6.5519|CA3292|CaO19.6326|IPF5729	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	13524	13883	+	orf19.6325.1	13524	13883	1	13524	13883	13539	13784		IPF5730.1|CA3291|IPF5730	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	13789	16046	-	orf19.6324	13789	16046	1	16046	13789	16035	13798	VID27	IPF5734.2|Contig4-2795_0012|orf6.5517|CA3290|CaO19.6324|IPF5734	Protein similar to S. cerevisiae Vid27p; transposon mutation affects filamentous growth; mutation confers hypersensitivity to toxic ergosterol analog; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	16122	16828	-	orf19.6323	16122	16828	1	16828	16122	16713	16135	HPA2	IPF14291.1|Contig4-2795_0013|orf6.5516|CA3289|CaO19.6323|HPA3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	17238	18237	+	orf19.6322	17238	18237	1	17238	18237	17289	18134	ARD	ARDH|ARD8|IPF14294.1|Contig4-2795_0014|orf6.5515|CA3288|ARD1|CaO19.6322	D-arabitol dehydrogenase, NAD-dependent (ArDH); enzyme of D-arabitol and D-arabinose catabolism; D-arabitol is a marker for active infection in humans; has conserved YXXXK motif of short-chain alcohol-polyol-sugar dehydrogenases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	18348	18718	+	orf19.6321	18348	18718	1	18348	18718	18362	18688	PGA48	orf6.5514|SPI1|IPF14295.1|Contig4-2795_0015|CA3287|CaO19.6321|IPF14295	Putative GPI-anchored protein of unknown function; similar to S. cerevisiae Spi1p, which is induced at stationary phase; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	18597	20843	-	orf19.6319	18597	20843	1	20843	18597	20661	18685		orf19.8766|IPF14298.2|orf6.815|orf6.5512|CA3286|orf19.1175|CaO19.6319|UBP3|UBP3.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	20907	21553	-	orf19.1178	20907	21553	1	21553	20907	21525	20920		orf19.8768|IPF18909.2|IPF15133.2|Contig4-2980_0001|orf6.1743|orf6.818|CA6185|CaO19.1178|IPF15133	Putative transcription factor with bZIP DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	21603	22973	+	orf19.1177	21603	22973	1	21603	22973	21616	22896		orf19.8769|IPF26139.1|IPF15134.2|Contig4-2980_0004|orf6.1744|orf6.817|CA0192|RTT106|CaO19.1177|IPF15134	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	22640	23375	-	orf19.1179	22640	23375	1	23375	22640	23292	22909		orf6.819|IPF19608.1|IPF19609.1|orf6.1745|CA0674|CaO19.1179|IPF19608	Transcriptionally regulated by iron; expression greater in high iron; possibly subject to Kex2p processing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	23422	24711	+	orf19.1180	23422	24711	1	23422	24711	23430	24677		orf19.8771|IPF13098.2|IPF19848.2|Contig4-2980_0007|orf6.1746|orf6.820|CA0675|CaO19.1180|IPF13098	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	24006	24861	-	ntar_1428	24006	24861	2	24861|24665	24841|24006	24361	24101			 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	24885	25973	+	orf19.1181	24885	25973	1	24885	25973	24885	25973		orf19.8772|IPF13097.2|IPF29548.1|Contig4-2980_0009|orf6.1747|CA0676|CaO19.8772|CaO19.1181|IPF13097	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr6	25025	26874	-	orf19.1182	25025	26874	1	26874	25025	26861	25968		orf19.8773|IPF13095.1|IPF13903.2|Contig4-2980_0011|orf6.1748|orf6.4619|CA0677|CaO19.1182|VAM7|IPF13095	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	26989	28678	+	orf19.1183	26989	28678	1	26989	28678	27005	28651		orf19.8774|IPF13094.1|IPF13902.1|Contig4-2980_0013|orf6.1749|orf6.4620|CA0678|CaO19.1183|IPF13094	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	28774	30018	+	orf19.1185	28774	30018	1	28774	30018	28800	29930		orf19.8776|IPF13090.3|IPF13899.2|Contig4-2980_0017|Contig4-2980_0018|orf6.1751|orf6.4622|orf6.515|CA2646|CaO19.1185|IPF13089	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	30077	31164	+	orf19.1186	30077	31164	1	30077	31164	30104	30796		orf19.8777|IPF13897.2|IPF13088.1|Contig4-2980_0021|orf6.4623|orf6.516|CA2647|CaO19.1186|IPF13088	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	31319	31534	+	ntar_968	31319	31534	1	31319	31534					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	31954	35300	+	orf19.1187	31954	35300	1	31954	35300	32572	35133	CPH2	orf19.8778|IPF13893.3|IPF9062.2|Contig4-2980_0027|orf6.4624|orf6.517|CA2648|CaO19.1187|IPF9062	Transcriptional activator of hyphal growth; Myc bHLH family: directly regulates Tec1p, which regulates hypha-specific genes; probably homodimeric, phosphorylated; enhances S. cerevisiae nitrogen starvation-induced pseudohyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	35482	35851	-	ntar_969	35482	35851	1	35851	35482	35670	35482			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	38509	41926	+	orf19.1189	38509	41926	2	38509|38816	38509|41926	39779	41833		orf19.8780|IPF19121.2|IPF9057.2|Contig4-2980_0031|orf6.4626|orf6.861|CA2649|CaO19.1189|IPF9057	Predicted ORF in Assemblies 19, 20 and 21; transcription regulated upon yeast-hyphal switch; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=A]
Ca21chr6	43721	46900	-	orf19.1190	43721	46900	1	46900	43721	46683	43852		orf19.8781|IPF9052.3|IPF13604.2|Contig4-3055_0026|orf6.4627|orf6.860|CA2650|CaO19.1190|VPH1|STV1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	47063	49731	+	orf19.1191	47063	49731	1	47063	49731	47177	49597		orf19.8782|IPF26127.1|IPF13605.2|Contig4-3055_0024|orf6.4628|CA2651|HRD3|CaO19.8782|CaO19.1191	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	49565	53930	-	orf19.1192	49565	53930	1	53930	49565	53930	49650	DNA2	orf19.8783|IPF26141.1|IPF15025.2|Contig4-3055_0023|orf6.2845|orf6.4629|CA2652|CaO19.1192|CaO19.8783	Protein similar to S. cerevisiae Dna2p, which is a DNA replication factor involved in DNA repair; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	54250	56189	-	orf19.1193	54250	56189	1	56189	54250	56126	54387	GNP1	orf19.8784|AGP1|IPF7152.2|IPF29546.1|Contig4-3055_0022|orf6.2846|orf6.4630|GNP2|CA1373|CaO19.1193	Protein described as similar to asparagine and glutamine permease; fluconazole or caspofungin induced; transcription is regulated by Nrg1p, Mig1p, Tup1p, Gcn2p, Gcn4p, and alkaline regulated by Rim101p; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	57471	60058	-	orf19.1195	57471	60058	1	60058	57471	60009	57658		orf19.8786|IPF26128.1|IPF7154.2|Contig4-3055_0020|orf6.2848|CA1374|CaO19.1195|OCT1|MIP1|CaO19.8786	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	60817	63718	+	orf19.1196	60817	63718	1	60817	63718	60917	63502		orf19.8787|IPF7158.2|IPF29542.1|Contig4-3055_0016|Contig4-3055_0017|Contig4-3055_0018|orf6.2849|CA1375|CaO19.1196|IPF7158	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	63439	64268	-	orf19.1198	63439	64268	1	64268	63439	64239	63694		orf19.8789|IPF7159.2|IPF29549.1|Contig4-3055_0014|orf6.2851|orf6.2947|CA1376|CaO19.1198|IPF7159	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	64403	66265	-	orf19.1199	64403	66265	1	66265	64403	66035	64485	NOP5	orf19.8790|IPF18691.2|IPF7161.1|NOP58|Contig4-3055_0011|Contig4-3055_0012|orf6.2852|orf6.2946|CA1438|CaO19.1199	Protein similar to S. cerevisiae Nop5p protein of small nucleolar ribonucleoprotein complex; transposon mutation affects filamentous growth; macrophage/pseudohyphal-induced; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	66360	67556	-	orf19.1200	66360	67556	1	67556	66360	67495	66500		orf19.8791|IPF26140.1|IPF7163.1|Contig4-3055_0009|orf6.2945|CA1437|CaO19.1200|CaO19.8791|IPF7163	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	67551	69156	+	orf19.1201	67551	69156	1	67551	69156	67551	69041		orf19.8792|IPF26135.1|IPF7165.1|Contig4-3055_0008|orf6.2944|CA1436|CaO19.1201|DIA4|IPF7165	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	68994	70464	-	orf19.1202	68994	70464	1	70464	68994	70422	69088		orf19.8793|IPF26137.1|IPF7166.2|Contig4-3055_0007|orf6.2943|CA1435|CaO19.1202|IPF7166	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	70590	73923	-	orf19.1203	70590	73923	1	73923	70590	73882	70652	SRO77	orf19.8794|IPF26148.1|IPF12463.2|Contig4-3055_0006|orf6.2942|CA1434|CaO19.1203|CaO19.8794|SNI2	Predicted ORF in Assemblies 19, 20 and 21; filament induced; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	74123	74819	+	orf19.1203.1	74123	74819	2	74123|74251	74164|74819	74162	74505		IPF26149.1|IPF12464.1|Contig4-3055_0003|orf6.2151|CA1433|IPF12464	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	74546	76226	-	orf19.1204	74546	76226	1	76226	74546	76177	74639		orf19.8795|IPF26134.1|IPF12465.2|Contig4-3055_0002|orf6.2941|CA1432|CaO19.8795|APM3|CaO19.1204	Phosphorylated protein of unknown function, transcription is upregulated clinical isolates from HIV positive patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	76394	78902	-	orf19.4215	76394	78902	1	78902	76394	78587	76710	FET34	orf19.11691|orf19.8797|orf6.5006|orf6.2939|IPF26138.1|IPF12467.2|IPF23068.1|IPF17039.1|FET5|FET34.3eoc|CA1431|CA2920|orf19.1206|FET35|FET5.5eoc	Protein similar to multicopper ferroxidase; expression greater in low iron and reduced in a fluconazole-resistant isolate; downregulated by Sfu1p, Hog1p; alkaline upregulated by Rim101p; ciclopirox olamine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	78972	79373	-	orf19.4214	78972	79373	1	79373	78972	79373	78972		orf19.11690|IPF17037|IPF23070.1|IPF17037.2|orf6.5007|CA2921|CaO19.4214|CaO19.11690	[NOT TRANSCRIBED?] Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	79836	82114	-	orf19.4213	79836	82114	1	82114	79836	82105	80231	FET31	FET33|IPF17035.2|IPF11903.2|orf6.789|CA2922|CaO19.4213|orf6.5008	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	83190	86153	-	orf19.4212	83190	86153	1	86153	83190	85591	83711	FET99	orf19.11689|orf6.5009|FET32|IPF11905.2|IPF17401.3|Contig4-2671_0004|Contig4-2671_0005|orf6.790|CA2923|CaO19.4212	Protein of multicopper oxidase family; similar to S. cerevisiae Fet3p; does not functionally complement S. cerevisiae fet3 mutant growth under low-iron conditions; iron-repressed transcription; regulated by Tup1p, Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	87061	89682	-	orf19.4211	87061	89682	1	89682	87061	89365	87506	FET3	orf19.11687|FET33|IPF11908.2|IPF19406.2|Contig4-2671_0009|Contig4-2671_0010|orf6.176|orf6.5010|CA2924|CaO19.4211|FET31|CaO19.11687	Multicopper oxidase; required for growth under low-iron conditions; null mutant shows decreased prostaglandin E2 production; functional homolog of S. cerevisiae Fet3p; ketoconazole, caspofungin, amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	89882	90061	+	ntar_970	89882	90061	1	89882	90061	89893	90027			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	92626	94243	+	orf19.4210	92626	94243	1	92626	94243	92713	94104		orf19.11686|IPF23064.1|IPF7827.2|Contig4-2854_0022|orf6.5011|CA2925|CaO19.4210|CaO19.11686|IPF7827	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	94155	95353	-	orf19.4209	94155	95353	1	95353	94155	95242	94247		orf19.11685|IPF23065.1|IPF7830.2|Contig4-2854_0019|orf6.5012|CA2926|UBA3|CaO19.11685|CaO19.4209	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	95609	97497	-	orf19.4208	95609	97497	1	97497	95609	97421	95727	RAD52	orf19.11684|IPF23060.1|IPF7833.2|Contig4-2854_0016|orf6.5013|CA2927|CaO19.4208|CaO19.11684	Required for homologous DNA recombination, repair of UV- or MMS-damaged DNA, telomere length, UV-induced LOH; constitutive expression, MMS-induced; weakly complements S. cerevisiae rad52 mutant; slow growth, increased white-to-opaque switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	97673	98413	-	orf19.4205.1	97673	98413	1	98413	97673	98367	98107		IPF23056.1|IPF7835.1|Contig4-2854_0013|CA2928|SME1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	97694	98148	+	ntar_971	97694	98148	1	97694	98148	97732	98046			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	98463	100504	+	orf19.4206	98463	100504	1	98463	100504	98566	100410		orf19.11682|IPF23059.1|IPF7838.1|Contig4-2854_0012|orf6.5015|CA2929|CaO19.11682|MUS81|CaO19.4206|IPF7838	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	100558	101614	+	orf19.4204	100558	101614	1	100558	101614	100601	101506		orf19.11680|IPF23066.1|IPF7840.1|Contig4-2854_0009|orf6.5017|CA2930|CaO19.4204|PET123|CaO19.11680|IPF7840	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	101805	104045	+	orf19.4203	101805	104045	1	101805	104045	101853	103841		orf19.11679|IPF23058.1|IPF7841.2|Contig4-2854_0008|orf6.5018|CA2931|NDC1|CaO19.11679|CaO19.4203|IPF7841	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	103959	106183	-	orf19.4201	103959	106183	1	106183	103959	105983	103992	NHX1	orf19.11677|IPF7842.1|IPF28496.1|Contig4-2854_0007|orf6.5020|CA2932|CaO19.4201|CaO19.11677	Protein similar to S. cerevisiae Nhx1p, which is an Na+/H+ exchanger required for intracellular sequestration of Na+ [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	107404	107763	+	orf19.4200	107404	107763	1	107404	107763	107404	107763		orf19.11676|IPF23075.1|IPF28499.1|orf6.2735|orf6.5021|CaO19.4200	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	107781	109616	+	orf19.4199	107781	109616	1	107781	109616	107927	109498		orf19.11675|IPF15071.3|IPF12346.2|Contig4-2426_0006|orf6.2736|orf6.5022|CA1300|CaO19.4199|SLY41	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	109535	110915	-	orf19.4197	109535	110915	1	110915	109535	110646	109741	YHM2	orf19.11673|IPF23067.1|IPF12348.2|Contig4-2426_0005|orf6.2738|CA1301|CaO19.4197|CaO19.11673	Alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	111222	111554	-	orf19.4196	111222	111554	1	111554	111222	111554	111222		IPF18710.1|orf6.2739|CaO19.4196	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	112220	112900	+	orf19.4195.1	112220	112900	2	112220|112432	112361|112900	112307	112829	FCA1	FCY1|IPF12349.1|IPF13513.1|Contig4-2373_0001|Contig4-2426_0003|CA1302|FCA1.3	Cytosine deaminase; enzyme of pyrimidine salvage; functional homolog of S. cerevisiae Fcy1p; mutation is associated with resistance to flucytosine (5-FC) in a clinical isolate; hyphal downregulated; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	112954	113590	+	orf19.4195	112954	113590	1	112954	113590	112970	113368		orf19.11672|IPF23072.1|IPF28497.1|Contig4-2373_0003|Contig4-2426_0002|orf6.2740|orf6.652|CaO19.4195	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	113082	114481	-	orf19.4194	113082	114481	1	114481	113082	114469	113378		orf19.11671|IPF12351.3|IPF13511.2|Contig4-2373_0004|Contig4-2373_0005|Contig4-2426_0007|orf6.2741|orf6.651|CA1303|CaO19.4194|TFB4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	114606	115636	-	orf19.4193.1	114606	115636	2	115636|115165	115570|114606	115590	114731	RPS13	IPF23071.1|IPF13509.2|Contig4-2373_0006|CA1304|RPS13.3	Putative ribosomal protein; ORF predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	115702	116604	-	orf19.4193	115702	116604	4	116604|116410|116245|115930	116475|116314|115993|115702	116477	115873		orf19.11670|IPF23074.1|IPF13508.2|Contig4-2373_0007|orf6.2742|CA1305|CaO19.11670|CaO19.4193|IPF13508.3f|IPF13508	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	116718	118926	+	orf19.4192	116718	118926	2	116718|117014	116938|118926	116893	118596	CDC14	orf19.11669|IPF23063.1|IPF13507.2|Contig4-2373_0009|orf6.2743|CA1306|CDC14.3	Protein involved in exit from mitosis and morphogenesis; ortholog of S. cerevisiae Cdc14p, which is a dual-specificity phosphatase and cell-cycle regulator; suppresses S. cerevisiae cdc15-lyt1, dbf2-2, and (partially) tem1 mutant phenotypes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	118594	119336	-	orf19.4192.1	118594	119336	2	119336|119208	119285|118594	119287	118747			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	119401	121162	+	orf19.3660	119401	121162	1	119401	121162	119503	121029		orf19.11144|IPF23638.1|IPF12270.3|orf6.3301|CA1685|CaO19.3660|CaO19.11144|IPF12270.3eoc|IPF12270|IPF12270.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	121022	122151	-	orf19.3659	121022	122151	1	122151	121022	122019	121120		orf19.11143|IPF23639.1|IPF12272.1|Contig4-2704_0009|orf6.3302|CA1686|CaO19.11143|CaO19.3659|IPF12272	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	122314	124565	+	orf19.3658	122314	124565	1	122314	124565	122527	124470		orf19.11142|IPF23630.1|IPF12275.2|Contig4-2704_0008|orf6.3303|CA1687|CaO19.11142|CaO19.3658|IPF12275	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	124455	126092	-	orf19.3656	124455	126092	1	126092	124455	126008	124569	COX15	orf19.11140|IPF23635.1|IPF13028.2|Contig4-2704_0006|orf6.3305|CA1688|CaO19.3656|CaO19.11140	Transcription is regulated by Nrg1p and Tup1p; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	126597	128513	+	orf19.3655	126597	128513	1	126597	128513	126597	128513			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	128105	128311	-	ntar_972	128105	128311	1	128311	128105					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	128414	128639	-	ntar_973	128414	128639	1	128639	128414	128579	128418			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	129619	131926	+	orf19.3653	129619	131926	1	129619	131926	129850	131802	FAT1	orf19.11137|IPF23631.1|IPF13033.1|Contig4-3041_0021|orf6.3308|CA1690|CaO19.3653|CaO19.11137	Predicted enzyme of sphingolipid biosynthesis; upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	131889	133343	-	orf19.3651	131889	133343	1	133343	131889	133290	132037	PGK1	orf19.11135|PGK|IPF23636.1|IPF17009.2|Contig4-3041_0020|orf6.3310|CA1691|CaO19.11135|CaO19.3651	Phosphoglycerate kinase; enzyme of glycolysis; localizes to cell wall and to cytoplasm; antigenic during murine or human systemic infection; biofilm, Hog1p, GCN-induced; downregulated upon phagocytosis; possible N-glycosylation at N349 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	134058	135213	+	orf19.3649	134058	135213	1	134058	135213	134314	135168		orf19.11133|IPF9690.1|IPF17003.3|Contig4-3041_0019|orf6.3312|orf6.664|CA0147|CaO19.3649|IPF9690	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	135105	137098	-	orf19.3648	135105	137098	2	137098|136848	136934|135105	137049	135201		orf19.11132|IPF9689.3|IPF28695.1|Contig4-3041_0018|orf6.3029|orf6.663|CA0146|IPF9689|IPF9689.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	137305	140802	+	orf19.3647	137305	140802	1	137305	140802	137397	140720		orf19.11131|IPF23650.1|IPF9686.1|Contig4-3041_0015|Contig4-3041_0016|orf6.3030|CA1495|SEC8|CaO19.11131|CaO19.3647|IPF9686	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	140747	141846	-	orf19.3646	140747	141846	1	141846	140747	141631	140876	CTR1	orf19.11130|orf6.3031|IPF23640.1|IPF9685.1|Contig4-3041_0013|CA1496|CaO19.11130|CaO19.3646	Copper transporter; probably multimeric; transcribed if copper limited; induced by Mac1p, macrophage interaction, alkaline pH via Rim101p; 17-beta-estradiol downregulated; complements S. cerevisiae ctr1 ctr3 copper transport mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	142161	144795	-	orf19.3644	142161	144795	1	144795	142161	144532	142349		orf19.11128|IPF12378.2|IPF9683.2|Contig4-3041_0010|orf6.2642|orf6.3033|CA1497|CaO19.3644|IPF9683	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	149427	150599	-	orf19.3643	149427	150599	1	150599	149427	150599	149427		orf19.11126|IPF13346.1|IPF12371.2|Contig4-1804_0004|Contig4-3041_0003|orf6.2641|orf6.3034|CA1498|CaO19.3643|IPF12371|IPF12371.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	156922	159809	+	orf19.3642	156922	159809	2	156922|158242	157220|159809	158331	159587	SUN41	orf19.11124|orf6.2071|IPF23637.1|IPF14577.2|Contig4-2119_0002|CA0883|SUN4|CaO19.3642|CaO19.11124	Putative cell wall glycosidase involved in biofilm formation; required for cell separation; hyphal induced; caspofungin repressed; Efg1p, Cph1p regulated; O-glycosylation, potential Kex2p substrate; 9 5' E-boxes; 5'-UTR intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	159777	162844	-	orf19.84	159777	162844	3	162844|161469|161336	161566|161420|159777	161777	159898	CAN3	orf19.11123|orf19.7729|IPF23634.1|IPF19550.1|IPF27172.1|IPF19551.1|IPF14582.1|Contig4-2119_0003|orf6.115|orf6.2072|orf19.3641	Predicted ORF in Assemblies 19, 20 and 21; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	164973	165749	+	orf19.85	164973	165749	1	164973	165749	165076	165567	GPX2	orf19.7730|orf6.1558|GPX1|IPF16333.2|IPF13205.1|GPX3|Contig4-2178_0002|CA0558|GPS1|CaO19.85|CaO19.7730	Similar to glutathione peroxidase; expression greater in high iron; alkaline upregulated by Rim101p; transcriptionally induced by alpha factor or interaction with macrophage; regulated by Efg1p; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	167115	167767	+	orf19.86	167115	167767	1	167115	167767	167189	167674		orf19.7731|GPX1|IPF27177.1|IPF13207.2|Contig4-2178_0004|orf6.1559|CA0559|CaO19.86|GPS2|CaO19.7731|HYR1	Protein described as glutathione peroxidase; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	168181	168809	+	ntar_974	168181	168809	1	168181	168809					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	168766	169219	-	ntar_975	168766	169219	1	169219	168766	169219	168938			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	169068	169956	+	orf19.87	169068	169956	1	169068	169956	169171	169860	GPX1	orf19.7732|IPF27176.1|IPF13211.1|GPX3|Contig4-1857_0003|Contig4-1857_0004|orf6.1560|orf6.3698|CA0560|GPS3|CaO19.87	Predicted ORF in Assemblies 19, 20 and 21; peroxide-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	169349	169519	-	ntar_976	169349	169519	1	169519	169349					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	169952	171427	-	orf19.88	169952	171427	1	171427	169952	171374	170172	ILV5	orf19.7733|IPF9595.2|IPF19137.2|Contig4-2691_0001|orf6.3699|orf6.810|CA1983|CaO19.88	Protein described as ketol-acid reductoisomerase; antigenic during human or murine infection; regulated by Gcn4p; amino acid starvation (3-aminotriazole) induced; biofilm induced; macrophage-downregulated protein; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	172074	173862	+	orf19.89	172074	173862	1	172074	173862	172306	173448		orf19.7735|IPF27170.1|IPF9594.2|Contig4-2691_0003|orf6.3701|orf6.811|CA0191|PEX7|CaO19.89	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	174517	176993	+	orf19.90	174517	176993	1	174517	176993	174667	176931		orf19.7736|IPF9592.2|IPF19136.2|Contig4-2691_0004|Contig4-2691_0007|orf6.3702|orf6.812|CA1984|CaO19.90|IPF9592	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	176730	177982	-	orf19.91	176730	177982	1	177982	176730	177896	176997		orf19.7737|IPF27171.1|IPF9591.2|Contig4-2691_0008|orf6.3703|CA1985|CaO19.7737|CaO19.91|IPF9591	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	178321	181184	-	orf19.92	178321	181184	1	181184	178321	181089	178399		orf19.7738|IPF27156.1|IPF14899.2|Contig4-2691_0009|orf6.3704|CA1986|CaO19.92|CaO19.7738|IPF14899	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	181478	181865	+	ntar_977	181478	181865	1	181478	181865					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	182676	183336	+	orf19.93	182676	183336	1	182676	183336	182745	183200		orf19.7739|IPF14895.1|IPF17607.2|Contig4-2306_0003|orf6.159|orf6.3705|CA1987|CaO19.93|IPF14895	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	183242	184220	-	orf19.94	183242	184220	1	184220	183242	184139	183405		orf19.7740|IPF17606.2|IPF19749.1|orf6.3706|CA1988|CaO19.94|CaO19.7740|IPF19749	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	184665	185809	-	orf19.95	184665	185809	1	185809	184665	185701	184811		orf19.7741|IPF27173.1|IPF16596.2|Contig4-2327_0006|orf6.3707|CA1989|CaO19.7741|CaO19.95|IPF16596	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	186474	189207	-	orf19.96	186474	189207	1	189207	186474	188928	186586	TOP1	orf19.7742|IPF17557.3|IPF29943.1|Contig4-2327_0003|Contig4-2327_0004|orf6.2499|orf6.3708|CA1990|CaO19.96|IPF17557.2	DNA topoisomerase I; required for wild-type growth and for wild-type mouse virulence; sensitive to camptothecin; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	189393	189528	-	ntar_978	189393	189528	1	189528	189393					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	191035	192887	+	orf19.97	191035	192887	1	191035	192887	191106	192821	CAN1	orf19.7744|IPF16927.2|IPF10466.2|Contig4-2197_0003|orf6.2500|orf6.388|orf6.389|CAN2|CaO19.97|CA1148	Amino acid permease, transports basic amino acids; complements lysine transport mutation; contains 10 predicted transmembrane regions and 3 predicted N-glycosylation sites; transcriptionally induced upon phagocytosis by macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	192772	194190	-	orf19.99	192772	194190	1	194190	192772	194149	193016	HAL21	orf19.7746|orf6.2502|IPF16926.2|IPF10464.2|Contig4-1664_0002|Contig4-2197_0005|MET222|CA1149|CaO19.99|MET223	Putative phosphoadenosine-5'-phosphate (PAP) or 3'-phosphoadenosine 5'-phosphosulfate (PAPS) phosphatase; possible role in sulfur recycling; biofilm induced; similar to S. cerevisiae Met22p; predicted Kex2p substrate; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	194192	195524	-	orf19.100	194192	195524	1	195524	194192	195350	194298		orf19.7747|IPF10462.3|IPF29954.1|Contig4-2197_0007|orf6.2503|orf6.490|CA0093|CaO19.100|IPF29954|IPF19980.repeat2|IPF10462.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	195884	197087	+	orf19.101	195884	197087	1	195884	197087	195973	197013	RIM9	orf19.7748|IPF20039.1|IPF10461.2|Contig4-1178_0001|orf6.2504|orf6.491|CA1150|CaO19.101	Protein required for alkaline pH response via the RIM101 signaling pathway; ortholog of S. cerevisiae RIM9 and A. nidulans palI [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	196928	198373	-	orf19.102	196928	198373	1	198373	196928	198335	197055		orf19.7749|IPF17548.2|IPF10459.1|Contig4-1178_0003|orf6.2505|orf6.492|CA1151|CaO19.102|IPF10459	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	198432	199112	+	orf19.103	198432	199112	1	198432	199112	198702	199112	KAR5	orf19.7750|IPF10457.3|Contig4-2013_0002|orf6.2506|CA1152|CaO19.103|IPF10457|CA1195|orf6.2573|IPF17213.2|IPF10457.2	Protein of unknown function; induced by alpha factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	199311	200183	+	orf19.104	199311	200183	1	199311	200183	199311	200183		IPF17213.3|IPF10455.3|Contig4-2013_0005|orf6.2507|CA1153|CaO19.104|IPF10455|IPF10455.2	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	200447	201825	+	orf19.105	200447	201825	1	200447	201825	200468	201649	HAL22	orf19.7752|IPF10454.1|Contig4-2013_0008|orf6.2508|orf6.2571|orf6.390|MET222|CA1154|MET22|CaO19.105|MET221|CA1194|IPF17216.2	Putative phosphoadenosine-5'-phosphate (PAP) or 3'-phosphoadenosine 5'-phosphosulfate (PAPS) phosphatase; possible role in sulfur recycling; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	201656	204245	-	orf19.107	201656	204245	1	204245	201656	204200	201705		orf19.7754|IPF27157.1|IPF10452.3|Contig4-2013_0010|Contig4-2501_0010|orf6.2510|orf6.2569|CA1155|DHR2|CaO19.107|JA2|IPF10452.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	204390	206094	+	orf19.109	204390	206094	1	204390	206094	204422	205927		orf19.7756|IPF11923.1|IPF10449.3|Contig4-2501_0009|orf6.2567|CA1193|CaO19.7756|MSY1|CaO19.109	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	205910	207890	-	orf19.111	205910	207890	1	207890	205910	207755	206049	CAN2	orf19.7758|IPF27165.1|IPF11927.1|Contig4-2501_0008|orf6.2565|CAN1|CaO19.111|CaO19.7758|CA1191|CA1192|IPF11926|IPF11926.1	Putative amino acid permease; transcription is regulated by Nrg1p and Tup1p; caspofungin induced; flucytosine induced; shows colony morphology-related gene regulation by Ssn6p; ; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	209464	210363	-	orf19.113	209464	210363	1	210363	209464	210363	209464	CIP1	orf19.7761|IPF11929.2|IPF14967.2|COR33|Contig4-2149_0001|Contig4-2501_0003|orf6.1181|orf6.2562|CA1190|CaO19.113	Protein with slight similarity to plant isoflavone reductase; transcription induced by cadmium (specifically, not by other heavy metals or heat shock), yeast-hyphal switch, oxidative stress (via Cap1p), or macrophage interaction [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr6	211668	212882	-	orf19.114	211668	212882	1	212882	211668	212844	211849		orf19.7762|IPF19622.2|IPF19689.1|Contig4-2149_0004|orf6.1182|CA6312|CaO19.114|IPF19622.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	212918	213981	-	orf19.115	212918	213981	2	213981|213865	213933|212918	213969	213048		IPF19623.1|Contig4-2149_0006|Contig4-2149_0007|orf6.1183|CA0484|CaO19.115|IPF19622.5f|IPF19622|orf6.1446|IPF19622.1	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	214457	216329	+	orf19.117	214457	216329	1	214457	216329	214611	216203		orf19.7764|IPF19868.1|IPF14761.2|Contig4-3075_0021|orf6.1185|orf6.1444|CA0483|CaO19.117|SEC9	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	217185	217808	-	ntar_979	217185	217808	1	217808	217185	217692	217531			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	218201	219679	+	orf19.118	218201	219679	1	218201	219679	218253	219563	FAD2	orf19.7765|IPF14763.2|IPF29951.1|Contig4-2244_0003|orf6.1443|CA0482|CaO19.7765|ODE1|CaO19.118|IPF14763	Delta-12 fatty acid desaturase, involved in production of linoleic acid, which is a major component of membranes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	219621	220684	-	orf19.119	219621	220684	1	220684	219621	220608	219811		orf19.7766|IPF14764.1|IPF29956.1|Contig4-2244_0002|orf6.1442|CA0481|STE14.3f|STE14	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	220692	221714	+	orf19.120	220692	221714	1	220692	221714	220895	221713		orf19.7767|Contig4-2238_0009|orf6.1441|orf6.405|CA0067|STE142|CaO19.120|IPF13904|IPF13904.2	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	221541	222525	-	orf19.121	221541	222525	1	222525	221541	222243	221695	ARC18	orf19.7768|IPF27178.1|IPF13905.2|Contig4-2238_0008|orf6.406|CA0068|CaO19.121|CaO19.7768	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	223361	226635	+	orf19.122	223361	226635	1	223361	226635	224232	226331	CDC20	orf19.7769|IPF13908.2|IPF19430.2|Contig4-2238_0005|orf6.139|orf6.2609|CA1218|CaO19.122	Protein similar to S. cerevisiae Cdc20p; induced under Cdc5p depletion; member of conserved Mcm1p regulon; mRNA expression peaks at cell-cycle G2/M phase; mRNA binds to She3p and is localized to buds of yeast-form cells and hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	226861	227916	+	orf19.123	226861	227916	1	226861	227916	226997	227629	RCN1	orf19.7770|IPF13909.1|IPF7047.3|Contig4-2238_0001|Contig4-2900_0028|orf6.138|orf6.2608|CA1217|CaO19.123|IPF13909	Protein involved in calcineurin-dependent signaling that controls stress response and virulence; inhibits calcineurin function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	228073	229450	+	orf19.124	228073	229450	1	228073	229450	228119	229216	CIC1	orf19.7771|IPF27169.1|IPF7046.2|Contig4-2900_0027|orf6.137|orf6.2607|CA0020|CaO19.124|IPF7046	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	229315	230833	-	orf19.125	229315	230833	1	230833	229315	230692	229469	EBP1	orf19.7772|Contig4-2900_0026|IPF7044.2|IPF29953.1|orf6.2606|CA1216|CaO19.125	NADPH oxidoreductase; interacts with phenolic substrates, such as 17beta-estradiol; possible role in response to estrogen; induced by oxidative and weak acid stress, nitric oxide, benomyl; activated by Cap1p, Mnl1p; no mammalian homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	232080	236909	-	orf19.130	232080	236909	1	236909	232080	236909	232296		orf19.7773|orf19.7775|orf19.7776|IPF7041.2|IPF27168.1|IPF7035.2|IPF19493.2|IPF29955.1|IPF7038.2|IPF29948.1|Contig4-2900_0020|Contig4-2900_0021|Contig4-2900_0023|orf6.10|orf6.2603|orf6.2602|orf6.2605|CA1215|CA1214|CA1213|orf19.126|orf19.127|orf19.129|VPS15.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	237041	237786	+	orf19.131	237041	237786	1	237041	237786	237112	237786		orf19.7777|IPF7033.2|IPF29957.1|Contig4-2900_0017|orf6.2601|CA1212|CaO19.131|BRR1|IPF7033	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	237906	238448	+	orf19.131.2	237906	238448	2	237906|238006	237940|238448	237906	238318		IPF7031.2|IPF29965.1|Contig4-2900_0015|CA1211|IPF7031.3f|IPF7031.3	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	238421	240372	-	orf19.132	238421	240372	1	240372	238421	240202	238421		orf19.7778|IPF7030.3|IPF29947.1|Contig4-2900_0013|orf6.2600|orf6.3482|CA1210|SIF2|CaO19.132|IPF7030|IPF7030.2	Putative ortholog of S. cerevisiae SIF2; has a LisH motif; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr6	242064	242387	+	orf19.133	242064	242387	1	242064	242387	242064	242387		IPF29964.1|Contig4-2900_0011|orf6.3481|CaO19.133	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	244274	244684	+	orf19.134	244274	244684	1	244274	244684	244274	244684		IPF7023.2|Contig4-2900_0005|orf6.3480|CA1818|CaO19.134|IPF7023.3f|IPF7023.3	Predicted ORF in Assemblies 19, 20 and 21; ciclopirox olamine induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	245415	248025	+	orf19.135	245415	248025	1	245415	248025	245503	247878		orf19.7779|IPF18738.2|IPF7021.2|Contig4-2900_0003|orf6.2599|orf6.3479|CA1817|CaO19.135|IPF7021	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	247851	250254	-	orf19.136	247851	250254	1	250254	247851	250103	248010		orf19.7780|IPF16599.3|IPF7020.2|Contig4-2900_0029|orf6.3478|orf6.459|CA1816|QDR3|CaO19.136|IPF7020	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	251503	253046	+	orf19.137	251503	253046	1	251503	253046	251684	252925		orf19.7781|IPF16598.2|IPF29952.1|orf6.3477|orf6.458|CA0086|CaO19.137|IPF16598	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	253239	254036	+	orf19.138	253239	254036	1	253239	254036	253239	254036	FIG1	orf19.7782|orf6.3476|IPF27175.1|IPF18606.1|CA1815|CaO19.7782|CaO19.138|IPF18606	Probable ortholog of S. cerevisiae Fig1p, which is an integral membrane protein required for mating; role in thigmotropism; transcription is opaque-specific, a-specific, and activated by Cph1p or alpha pheromone [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	254445	266092	+	orf19.139	254445	266092	1	254445	266092	254562	266027	TRA1	orf19.7783|orf19.10955|IPF27181.1|IPF14787.2|IPF23848.1|IPF5342.2|orf6.3475|orf6.2789|CA1814|CA1335|orf19.3451|TRA1.5eoc	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	266085	266917	-	orf19.3450.1	266085	266917	2	266917|266594	266675|266085	266917	266178		orf19.10954|IPF23864.1|IPF5338.2|orf6.2790|orf19.3450|CA6209|IPF5336	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	267288	268066	-	orf19.3449.2	267288	268066	2	268066|267689	267780|267288	267995	267288		IPF23870.1|IPF5335.1|orf19.3449.1|CA1337|IPF5334|CA1336|IPF5334.exon2	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	268131	270459	+	orf19.3449	268131	270459	1	268131	270459	268193	270313		orf19.10953|IPF5333.2|IPF18267.2|Contig4-2082_0004|orf6.2791|orf6.6456|CA1338|CaO19.3449|IPF5333	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	269503	270171	-	ntar_980	269503	270171	1	270171	269503					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	270359	270829	-	ntar_981	270359	270829	1	270829	270359					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	271929	272947	+	orf19.3448	271929	272947	1	271929	272947	272389	272730		orf19.10952|IPF5330.2|IPF28770.1|orf6.2792|orf6.6457|CA1339|CaO19.3448|IPF5330	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-repressed; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	273226	273809	-	ntar_982	273226	273809	1	273809	273226					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	273437	275829	+	orf19.3447	273437	275829	1	273437	275829	274110	275555		orf19.10951|IPF18703.2|IPF5328.2|Contig4-2814_0003|orf6.2793|orf6.6458|CA4017|CaO19.3447|PBN1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	274773	274976	-	ntar_983	274773	274976	1	274976	274773					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	275346	276377	-	orf19.3446	275346	276377	1	276377	275346	276219	275605		orf19.10950|IPF23844.1|IPF5327.2|Contig4-2814_0004|orf6.6459|CA4018|MOG1|CaO19.3446|CaO19.10950	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	276344	277826	+	orf19.3445	276344	277826	1	276344	277826	276568	277755	HOC1	orf19.10949|IPF23835.1|IPF5326.2|Contig4-2814_0005|orf6.6460|YJR75|CA4019|CaO19.10949|CaO19.3445	Protein with similarity to mannosyltransferases; similar to S. cerevisiae Hoc1p and C. albicans Och1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	277850	278171	-	ntar_984	277850	278171	1	278171	277850					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	278862	280995	+	orf19.3444	278862	280995	1	278862	280995	278862	280892		orf19.10948|IPF23814.1|IPF5324.2|Contig4-2814_0009|orf6.6461|CA4020|CaO19.3444|SGE13|CaO19.10948|IPF5324	Predicted membrane transporter, member of the drug:proton antiporter (14 spanner) (DHA2) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	279401	279829	-	ntar_985	279401	279829	1	279829	279401	279667	279401			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	280948	282499	-	orf19.3443	280948	282499	1	282499	280948	282365	281154	OYE2	orf19.10947|IPF23834.1|IPF5323.2|Contig4-2814_0011|orf6.6462|CaO19.10947|OYE22|CaO19.3443	Putative NAPDH dehydrogenase; fungal-specific (no human or murine homolog); induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	282749	284019	-	orf19.3442	282749	284019	1	284019	282749	284006	282765		orf19.10946|IPF23833.1|IPF5322.2|Contig4-2814_0014|orf6.6463|CA4021|OYE23|CaO19.10946|CaO19.3442|EBP2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	284236	285876	+	ntar_986	284236	285876	1	284236	285876	284888	285106			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	284716	286021	-	orf19.3441	284716	286021	1	286021	284716	285703	284912	FRP6	orf19.10945|IPF23842.1|IPF5321.1|Contig4-2814_0016|orf6.6464|CA4022|CaO19.10945|AFF10|CaO19.3441	Transcription is regulated by Nrg1p and Tup1p; regulated by Ssn6p; upregulated in the presence of human neutrophils [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	286466	287230	+	ntar_987	286466	287230	1	286466	287230					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	287518	288351	-	orf19.3440	287518	288351	1	288351	287518	288351	287518	FRP5	orf19.10944|FUN34|IPF23843.1|IPF7185.2|Contig4-2644_0005|orf6.6465|CA4023|CaO19.10944|AFF11|CaO19.3440	Predicted ORF in Assemblies 19, 20 and 21; flucytosine repressed [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	289373	290574	-	orf19.3439	289373	290574	1	290574	289373	290450	289497		orf19.10943|IPF23841.1|IPF7182.2|Contig4-2644_0006|orf6.6466|CA4024|CaO19.10943|CaO19.3439|IPF7182	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	292700	294055	-	orf19.3438	292700	294055	1	294055	292700	293962	292808		orf19.10942|IPF23837.1|IPF7178.2|Contig4-2644_0011|orf6.6467|CA4025|CaO19.10942|SCJ1|CaO19.3438	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	294615	296343	+	orf19.3437	294615	296343	1	294615	296343	294697	296325		orf19.10941|IPF23824.1|IPF7175.2|orf6.6468|CA4026|CaO19.10941|CaO19.3437|IPF7175	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	296934	297544	+	orf19.3436	296934	297544	1	296934	297544	296984	297529		orf19.10940|IPF23850.1|IPF7174.2|Contig4-2411_0003|orf6.6469|CA4027|CaO19.10940|CaO19.3436|IPF7174	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	297593	298197	-	orf19.3435	297593	298197	1	298197	297593	298115	297672		orf19.10939|IPF23851.1|IPF7173.2|Contig4-2411_0004|orf6.6470|CA4028|CaO19.10939|CaO19.3435|IPF7171.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	298270	301239	-	orf19.3434	298270	301239	1	301239	298270	301239	298270		orf19.10938|IPF23803.1|IPF7171.2|Contig4-2411_0005|orf6.6471|CA4029|CaO19.10938|CaO19.3434|IPF7171.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	304836	306056	+	orf19.3433	304836	306056	1	304836	306056	304836	306056	OYE23	orf19.10937|IPF19549.2|IPF19548.1|orf6.6472|orf6.92|OYE21|EBP4|CA4030|CaO19.3433	Putative NAPDH dehydrogenase; induced by nitric oxide, benomyl; oxidative stress-induced via Cap1p; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	306758	308398	+	orf19.3432	306758	308398	1	306758	308398	306758	308398		orf19.10936|IPF23823.1|IPF11077.2|Contig4-2589_0012|orf6.6473|CA4031|CaO19.10936|CaO19.3432|IPF11077	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS); induced by nitric oxide [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	307090	307247	-	ntar_988	307090	307247	1	307247	307090					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	309368	310568	-	ntar_989	309368	310568	1	310568	309368	310071	309892			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	312622	313523	+	ntar_990	312622	313523	1	312622	313523	312823	312954			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	313242	317908	-	orf19.3431	313242	317908	1	317908	313242	317775	314089		orf19.10935|IPF23872.1|IPF19795.1|Contig4-2589_0001|Contig4-2589_0002|orf6.6474|CA4033|MIP1|CaO19.10935|CaO19.3431|IPF19795	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	318813	319241	-	ntar_991	318813	319241	1	319241	318813					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	318817	319219	+	ntar_992	318817	319219	1	318817	319219					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	319498	321282	+	orf19.3430	319498	321282	1	319498	321282	319769	320803		orf19.10934|IPF23839.1|IPF7385.2|Contig4-1688_0002|orf6.6095|CA3748|CaO19.3430|CaO19.10934|IPF7385|BUD21	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	321375	324664	-	orf19.3429	321375	324664	1	324664	321375	324463	321539	FGR47	orf19.10933|IPF23804.1|IPF7389.2|Contig4-1688_0001|orf6.6096|CA3749|CaO19.10933|CaO19.3429|IPF7389	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	327541	327732	-	ntar_993	327541	327732	1	327732	327541					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	328011	330163	+	orf19.3428	328011	330163	1	328011	330163	328521	330002		orf19.10932|IPF23827.1|IPF7377.1|Contig4-2308_0006|orf6.6097|CA3750|CaO19.3428|CaO19.10932|IPF7377	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	330186	330536	+	orf19.3427	330186	330536	1	330186	330536	330186	330536		orf19.10931|IPF23857.1|IPF7378.2|Contig4-2308_0004|Contig4-2308_0005|Contig4-2520_0001|Contig4-2520_0003|orf6.6098|CA3751|CaO19.10931|CaO19.3427|IPF7378	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	330558	332726	+	orf19.3426	330558	332726	2	330558|331989	331271|332726	331257	332450	ANB1	orf19.10930|IPF23859.1|IPF20144.1|Contig4-2520_0008|orf6.6099|CA3752|TIF51|TIF51.3f|TIF51.3	Putative translation initiation factor; decreased expression in hyphae compared to yeast-form cells; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	330811	331100	-	ntar_994	330811	331100	1	331100	330811	331050	330874			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	334641	336782	+	orf19.3425	334641	336782	1	334641	336782	334921	336720		orf19.10929|IPF23817.1|IPF14743.2|Contig4-2520_0014|Contig4-2520_0015|Contig4-2520_0016|orf6.6100|CA3753|CaO19.10929|CaO19.3425|IPF14743	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	337055	339092	+	orf19.3423	337055	339092	1	337055	339092	337289	338656	TIF3	orf19.10927|IPF23831.1|IPF16643.2|Contig4-2520_0017|orf6.6102|CA3754|CaO19.3423|CaO19.10927	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	339486	340342	+	orf19.3421.1	339486	340342	2	339486|339793	339714|340342	339657	340241		IPF23856.1|IPF17743.2|CA3755|IPF17743	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	340217	348064	-	orf19.3422	340217	348064	1	348064	340217	348064	340358	FMP27	orf19.10926|IPF23847.1|IPF8884.2|Contig4-2903_0002|orf6.6103|CA3756|CaO19.10926|CaO19.3422|IPF8884	Putative protein of unknown function; mRNA binds She3p; fungal-specific (no human or murine homolog); predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr6	348496	348879	-	orf19.3420	348496	348879	1	348879	348496	348879	348496		orf19.10924|IPF23862.1|IPF28763.1|Contig4-2903_0003|orf6.6105|CaO19.10924|CaO19.3420	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; decreased expression in hyphae compared to yeast-form cells [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	350491	352718	+	orf19.3419	350491	352718	1	350491	352718	350706	352598	MAE1	orf19.10923|IPF23815.1|IPF8888.2|Contig4-2903_0008|orf6.6106|CA3757|CaO19.10923|CaO19.3419	Malic enzyme, mitochondrial; transcription regulated by Mig1p and Tup1p; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	352648	353854	-	orf19.3418	352648	353854	1	353854	352648	353854	352769		orf19.10922|IPF8889.2|IPF14736.3|Contig4-2903_0009|orf6.2731|orf6.6107|CA3758|CaO19.3418|AFP98|IPF8889	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	354206	356498	+	orf19.3417	354206	356498	1	354206	356498	354214	356418	ACF2	orf19.10921|IPF23811.1|IPF14734.2|Contig4-2903_0011|Contig4-2923_0026|orf6.2732|orf6.6108|ENG2|CA1297|CaO19.3417	Putative endo-1,3-beta-glucanase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	354963	356498	-	ntar_995	354963	356498	1	356498	354963	356498	356190			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	356847	358153	+	orf19.3415.1	356847	358153	2	356847|357455	357012|358153	357012	357849	RPL32	IPF23866.1|IPF12449.2|Contig4-2923_0003|CA1298	Predicted ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	358023	360785	-	orf19.3415	358023	360785	1	360785	358023	360612	358174	PTK2	orf19.10918|IPF23808.1|IPF12448.2|Contig4-2923_0004|Contig4-2923_0005|Contig4-2923_0006|orf6.2734|orf6.6110|CA1299|CaO19.3415	Putative protein kinase of polyamine import; mutation confers hypersensitivity to high concentrations of tunicamycin; upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	362426	362660	+	ntar_996	362426	362660	1	362426	362660					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	363878	365166	-	orf19.3414	363878	365166	1	365166	363878	365076	364264	SUR7	orf19.10917|IPF12442.1|IPF12038.2|Contig4-2923_0010|orf6.360|CA0055|CaO19.10917|CaO19.3414|IPF12442	Protein required for wild-type cell wall, plasma membrane, cytoskeletal organization, endocytosis; localizes to eisosome subdomains of plasma membrane; four transmembrane motifs; mutant shows ectopic, chitin-rich cell wall [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	366036	366344	+	orf19.3413	366036	366344	1	366036	366344	366036	366344	FGR37	orf19.10916|IPF23877.1|IPF12034.2|Contig4-2923_0016|orf6.2102|CA0902|CaO19.10916|CaO19.3413|IPF12034	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	366336	368450	-	orf19.3412	366336	368450	1	368450	366336	368297	366504	ATG15	orf19.10915|IPF23816.1|IPF12033.2|Contig4-2923_0017|orf6.2101|CA0901|CaO19.3412|CaO19.10915|IPF12033	Putative lipase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	368614	369689	-	orf19.3411	368614	369689	1	369689	368614	369515	368628		orf19.10914|IPF9910.1|IPF12031.1|Contig4-2923_0018|orf6.2100|orf6.4320|CA0900|CaO19.3411|IPF12031	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	369819	372484	+	orf19.3409	369819	372484	1	369819	372484	369918	372443	SEC12	orf19.10912|orf6.2098|IPF9907.2|IPF12029.2|Contig4-2923_0022|orf6.4323|CA2425|CaO19.3409|IPF9907	Protein described as a guanyl-nucleotide exchange factor; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	372764	374140	+	orf19.3407	372764	374140	1	372764	374140	372783	373919		orf19.10910|IPF23836.1|IPF9901.1|Contig4-2923_0023|orf6.4324|CA2426|CaO19.3407|RAD18|CaO19.10910|IPF9901	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	374012	375744	-	orf19.3406	374012	375744	1	375744	374012	375610	374207		orf19.10909|IPF23830.1|IPF9898.2|Contig4-2923_0025|orf6.4325|CA2427|CaO19.3406|CaO19.10909|IPF9898	Predicted ORF in Assemblies 19, 20 and 21; member of conserved Mcm1p regulon [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	376278	378236	-	orf19.3405	376278	378236	2	378236|378087	378148|376278	378225	376633		ZCF18|orf19.10908|IPF23829.1|IPF9894.2|Contig4-2230_0002|orf6.4326|CA2428|IPF9894|IPF9894.3	Putative transcription factor with zinc finger DNA-binding motif; heterozygous null mutant displays sensitivity to virgineone; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	378751	378823	+	ta(ugc)1	378751	378823	1	378751	378823				tA(UGC)1.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	379014	380495	+	orf19.3404	379014	380495	1	379014	380495	379014	380495		orf19.10907|IPF23828.1|IPF9890.1|IPF9890|Contig4-2230_0003|Contig4-2230_0005|orf6.4327|CA2429|CaO19.10907|CaO19.3404	Decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	379547	379904	-	ntar_997	379547	379904	1	379904	379547	379897	379547			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	380326	381793	-	orf19.3402	380326	381793	2	381793|381663	381731|380326	381748	380539	FPG1	orf19.10905|IPF23838.1|IPF12950.2|Contig4-2230_0006|Contig4-2399_0005|orf6.4329|CA2430|FDG1|CaO19.3402|CaO19.10905|IPF12950	Formamidopyrimidine DNA glycosylase, involved in repair of gamma-irradiated DNA [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	381859	382718	+	orf19.3401	381859	382718	1	381859	382718	381908	382564	CTA1	orf19.10904|IPF23849.1|IPF12951.2|Contig4-2399_0004|orf6.4330|CA2431|MOS10|VPS60|CaO19.10904|CaO19.3401|IPF12951	Protein similar to S. cerevisiae Mos10p, which affects S. cerevisiae filamentous growth; activates transcription in 1-hybrid assay in S. cerevisiae; protein levels increase under weak acid stress; nonessential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	382463	383593	-	orf19.3400	382463	383593	1	383593	382463	383593	382610	COQ3	orf19.10903|IPF23840.1|IPF12953.1|Contig4-2399_0003|orf6.4331|CA2432|CaO19.3400|CaO19.10903	Protein described as having role in coenzyme Q biosynthesis; transcriptionally induced by interaction with macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	383688	386164	+	orf19.3399	383688	386164	1	383688	386164	383745	386039		orf19.10902|IPF23810.1|IPF12959.2|Contig4-2399_0001|Contig4-2516_0010|orf6.4332|CA2433|VPS72|CaO19.10902|CaO19.3399|IPF12959	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	385985	386706	-	orf19.3396	385985	386706	2	386706|386544	386628|385985	386653	386112	HCH1	orf19.10899|IPF23860.1|IPF9484.2|Contig4-2516_0001|orf6.4335|CA2434|IPF9484	Protein not essential for viability; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); similar to S. cerevisiae Hch1p, which is a regulator of heat shock protein Hsp90p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	386857	388408	-	orf19.3395	386857	388408	1	388408	386857	388408	386876		orf19.10898|IPF9483.2|IPF9481.3|Contig4-2516_0002|orf6.4336|CA2435|CaO19.3395|IPF9483	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS); induced by nitric oxide, oxidative stress, alpha pheromone; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr6	389172	390147	+	orf19.3394	389172	390147	1	389172	390147	389358	389987		orf19.10897|IPF18467.2|IPF9480.1|Contig4-2516_0006|orf6.1807|orf6.4337|CA0714|CaO19.3394|CaO19.10897|IPF9480	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	390054	391880	-	orf19.3393	390054	391880	1	391880	390054	391842	390118		orf19.10896|IPF23819.1|IPF9477.2|Contig4-2516_0008|orf6.1808|CA0715|DBP9|CaO19.10896|CaO19.3393	Putative DEAD-box helicase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	392047	392864	-	orf19.3392	392047	392864	1	392864	392047	392806	392084	DOG1	orf19.10895|IPF23846.1|IPF9474.2|DOG2|Contig4-1966_0001|Contig4-2516_0009|orf6.1809|CA0716|CaO19.3392|CaO19.10895	Putative 2-deoxyglucose-6-phosphatase; haloacid dehalogenase hydrolase/phosphatase superfamily; similar to S. cerevisiae Dog1p, Dog2p, Hor1p, and Rhr2p; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	393713	394691	+	orf19.3391	393713	394691	1	393713	394691	393777	394526	ADK1	orf19.8301|orf19.10894|IPF23845.1|IPF20062.1|IPF26639.1|IPF20093.1|Contig4-1966_0003|Contig4-2154_0002|orf6.3696|orf6.1810|CA1982|orf19.683|ADK12|CaO19.10894|CaO19.3391	Protein described as adenylate kinase; decreased expression in hyphae compared to yeast-form cells; macrophage-induced protein; adenylate kinase release can be used as a marker for cell lysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	394606	396365	-	orf19.684	394606	396365	1	396365	394606	396286	394739		orf19.8302|orf19.10893|IPF23861.1|IPF16687.2|IPF26627.1|IPF9470.2|Contig4-2154_0003|orf6.3695|orf6.1811|CA1981|orf19.3390|CaO19.8302|PCF11|CaO19.684|IPF9470	Putative transcription factor with zinc finger DNA-binding motif; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	397039	398103	+	orf19.685	397039	398103	1	397039	398103	397098	398012	YHM1	orf19.8303|IPF9468.2|IPF29742.1|IPF16978.2|Contig4-1684_0002|Contig4-2154_0005|orf6.3694|orf6.685|CA1980	Putative mitochondrial carrier protein; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	398379	399127	+	orf19.685.1	398379	399127	1	398379	399127	398745	398978			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	398986	400767	-	orf19.686	398986	400767	1	400767	398986	400699	399104		orf19.8304|IPF16976.3|IPF9577.2|Contig4-1684_0005|Contig4-2607_0006|orf6.3693|orf6.686|CA1979|CaO19.686|IPF9577	Predicted ORF in Assemblies 19, 20 and 21; regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	400911	402754	+	orf19.687	400911	402754	1	400911	402754	400988	402673		orf19.8305|IPF26624.1|IPF9580.2|Contig4-2607_0005|orf6.3692|CA1978|CaO19.8305|CaO19.687|IPF9580	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	402571	403782	-	orf19.687.1	402571	403782	2	403782|403244	403690|402571	403696	402823	RPL25	IPF26650.1|IPF9581.1|Contig4-2607_0004|CA1977|RPL25.3	ORF Predicted by Annotation Working Group; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	403966	404787	-	orf19.688	403966	404787	1	404787	403966	404702	404055		orf19.8306|IPF26642.1|IPF9582.1|Contig4-2607_0002|orf6.3691|CA1976|CaO19.688|MRPS18|IPF9582	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	405984	407865	+	orf19.689	405984	407865	1	405984	407865	405984	407801	PLB1	orf19.8307|IPF26625.1|IPF9584.2|Contig4-1818_0003|orf6.3690|CA1975|CaO19.689	Phospholipase B; required for wild-type host cell penetration and for wild-type virulence in mouse model of systemic infection; Hog1p-induced; predicted signal sequence, N-glycosylation, and possible Y phosphorylation site, not GPI anchor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr6	409423	411252	+	orf19.690	409423	411252	1	409423	411252	409423	411252	PLB2	orf19.8309|IPF11981.1|IPF29741.1|Contig4-2418_0004|orf6.1985|CA0825|CaO19.8309|CaO19.690	Putative phospholipase B; conserved catalytic region; 6 putative N-glycosylation motifs; predicted secretion signal; no GPI anchor predicted; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	409896	410334	-	ntar_998	409896	410334	1	410334	409896	410146	410018			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	410460	411070	-	ntar_999	410460	411070	1	411070	410460	411026	410841			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	411363	412812	-	orf19.691	411363	412812	1	412812	411363	412675	411560	GPD2	orf19.8310|IPF26632.1|IPF11982.1|Contig4-2418_0003|orf6.1984|CA0824|CaO19.691|CaO19.8310	Similar to glycerol 3-P dehydrogenases; regulated by Ssn6p (colony morphology-related), Nrg1p, Efg1p; induced upon osmotic and oxidative stress (via Hog1p), cell wall regeneration, macrophage/pseudohyphal growth, core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	414631	416136	-	orf19.692	414631	416136	1	416136	414631	416044	414704		orf19.8311|orf19.11003|IPF23773.1|IPF12234.2|IPF26641.1|IPF11987.1|Contig4-2418_0008|orf6.1983|orf6.4369|CA2459|CA0823|orf19.3509|PEX20|CaO19.692|CaO19.8311|IPF11987.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	416170	417587	-	orf19.3508	416170	417587	1	417587	416170	417449	416316		orf19.11002|IPF23767.1|IPF12233.1|Contig4-2540_0001|orf6.4368|CA2458|CaO19.3508|CaO19.11002|IPF12233	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	417855	419089	+	orf19.3507	417855	419089	1	417855	419089	418020	418925	MCR1	orf19.11001|IPF23768.1|IPF12231.1|Contig4-2540_0002|orf6.4367|CA2457|CaO19.3507|CaO19.11001	Protein described as NADH-cytochrome-b5 reductase; soluble protein in hyphae; biofilm induced; alkaline downregulated; ketoconazole or flucytosine induced, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	419093	421440	+	orf19.3506	419093	421440	1	419093	421440	419093	420490	DBR1	orf19.11000|IPF23766.1|IPF12230.1|Contig4-2540_0003|orf6.4366|CA2456|CaO19.11000|CaO19.3506	Debranchase; homozygous mutant accumulates lariat intermediates of mRNA splicing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	420687	421951	-	ntar_1000	420687	421951	1	421951	420687	420908	420687			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	422054	424839	+	orf19.3505	422054	424839	1	422054	424839	422257	424725		orf19.10999|IPF23765.1|IPF12228.2|Contig4-2880_0016|orf6.4365|CA2455|CaO19.3505|CaO19.10999|IPF12228	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	424878	426144	-	orf19.3504	424878	426144	2	426144|425412	425928|424878	425969	425041	RPL23A	orf19.10998|IPF23772.1|IPF9946.1|RPL23B|Contig4-2880_0015|orf6.4364|CA2454|RPL23B.3	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	425580	425888	+	orf19.3503	425580	425888	1	425580	425888	425580	425888		orf19.10997|IPF23774.1|IPF28752.1|orf6.4363|CaO19.10997|CaO19.3503	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	426411	429683	-	orf19.3501	426411	429683	1	429683	426411	429683	426543		orf19.10995|IPF9950.2|IPF28751.1|Contig4-2880_0012|orf6.4361|CA2453|CaO19.3501|CaO19.10995|IPF9950	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	434456	434959	+	orf19.3499	434456	434959	1	434456	434959	434456	434959		orf19.10993|IPF9955.1|IPF18868.2|Contig4-2880_0005|orf6.4359|CA2452|LDG8|CaO19.3499|IPF9955	Predicted ORF in Assemblies 19, 20 and 21; regulated by Tsa1p, Tsa1Bp under H2O2 stress conditions; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr6	435457	436201	-	ntar_1001	435457	436201	1	436201	435457	435727	435566			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	436330	437663	+	orf19.3498	436330	437663	1	436330	437663	436421	437512		orf19.10992|IPF9957.2|IPF14060.2|Contig4-2880_0003|orf6.1942|orf6.4358|CA0802|CaO19.3498|IPF14060	Predicted ORF in Assemblies 19, 20 and 21; predicted enzyme of arginine degradation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	437835	443207	+	orf19.3496	437835	443207	1	437835	443207	438049	443028		orf19.10990|IPF23771.1|IPF14063.2|Contig4-2880_0001|Contig4-2880_0002|orf6.1940|CA0801|CaO19.10990|CHC1|CaO19.3496	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	443143	444407	-	orf19.3494	443143	444407	1	444407	443143	444305	443205	CTF5	orf19.10988|IPF23769.1|IPF14064.2|Contig4-2880_0017|orf6.1938|CA0800|MCM21|CaO19.10988|CaO19.3494|IPF14064	Protein induced during the mating process; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	444551	447804	+	orf19.3453	444551	447804	1	444551	447804	444675	447635		orf19.10957|IPF23775.1|IPF9785.2|Contig4-2892_0004|orf6.1812|CA0717|CaO19.10957|CaO19.3453|IPF9785	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	447600	449243	-	orf19.3455	447600	449243	1	449243	447600	449123	447762		orf19.10959|IPF23788.1|IPF9782.1|Contig4-2892_0005|Contig4-2892_0006|orf6.1814|CA0718|CaO19.10959|LPE10|CaO19.3455|IPF9782	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	449498	451367	+	orf19.3456	449498	451367	1	449498	451367	449592	451262		orf19.10960|IPF23784.1|IPF9779.2|Contig4-2892_0008|Contig4-2892_0009|orf6.1815|CA0719|CaO19.3456|IPF9779.5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	451019	452564	-	orf19.3457	451019	452564	1	452564	451019	452456	451305	SWD3	orf19.10961|IPF9778.1|IPF17933.2|Contig4-2892_0010|orf6.1816|orf6.3760|CA0720|CaO19.3457|IPF17932	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	452909	453859	+	orf19.3458	452909	453859	1	452909	453859	453159	453704		orf19.10962|IPF9777.2|IPF17934.2|Contig4-2892_0013|orf6.1817|orf6.3761|CA2026|CaO19.3458|IPF9777	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	453905	456302	-	orf19.3459	453905	456302	1	456302	453905	455539	454319		orf19.10963|IPF9776.2|IPF28754.1|Contig4-2892_0016|orf6.3762|CA2027|MCK1|CaO19.3459|CaO19.10963	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	458168	458684	-	orf19.3460	458168	458684	1	458684	458168	458642	458241		orf19.10964|IPF9771.2|IPF14969.1|Contig4-2623_0001|Contig4-2892_0018|orf6.3763|orf6.994|CaO19.3460	Putative protein of unknown function; mRNA binds to She3p; transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	460114	460792	-	ntar_1002	460114	460792	1	460792	460114	460675	460502			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	460118	460852	+	orf19.3461	460118	460852	1	460118	460852	460187	460549		orf19.10965|IPF23797.1|IPF14968.2|Contig4-2623_0003|orf6.3764|orf6.995|CA0254|CaO19.3461|IPF14968	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	461325	462413	+	orf19.3462	461325	462413	2	461325|461679	461520|462413	461502	462232	SAR1	orf19.10966|IPF13117.2|IPF28755.1|Contig4-2623_0005|orf6.3765|CA2029|CaO19.3462|CaO19.10966|SAR1.3f|SAR1.3	Functional homolog of S. cerevisiae Sar1p, which is required for ER-to-Golgi protein transport; binds GTP; similar to small GTPase superfamily proteins; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	463099	465310	+	orf19.3463	463099	465310	1	463099	465310	463176	465230		orf19.10967|IPF23780.1|IPF13116.1|Contig4-2623_0007|orf6.3766|CA2030|LSG1|CaO19.10967|CaO19.3463|IPF13116	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	465251	466097	-	orf19.3465	465251	466097	1	466097	465251	466025	465372	RPL10A	orf19.10969|IPF23796.1|IPF13114.1|RPL1B|Contig4-2623_0008|orf6.3768|CA2031|CaO19.10969|RPL1|CaO19.3465	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	466317	467625	+	orf19.3466	466317	467625	1	466317	467625	466435	467574		orf19.10970|IPF23794.1|IPF13112.2|orf6.3769|CA2032|CaO19.3466|CaO19.10970|IPF13112	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	467614	470771	-	orf19.3467	467614	470771	1	470771	467614	470604	467785		orf19.10971|IPF16985.2|IPF19248.2|orf6.3770|orf6.498|CA2033|SEC27|CaO19.3467	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	470929	473004	-	orf19.3468	470929	473004	1	473004	470929	472911	471082	ALG11	orf19.10972|IPF23781.1|IPF19249.1|orf6.3771|orf6.497|CA0095|CaO19.3468	Protein with similarity to mannosyltransferases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	474094	475562	+	orf19.3469	474094	475562	1	474094	475562	474249	475436		orf19.10973|IPF15632.2|IPF19086.2|Contig4-2269_0001|orf6.257|orf6.961|CA0040|CaO19.3469|IPF15632	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	475578	478189	-	orf19.3470	475578	478189	1	478189	475578	478131	475750		orf19.10974|orf6.962|IPF16554.3|IPF15630.2|Contig4-2269_0004|orf6.256|orf6.4989|CA0241|CaO19.3470|IPF15630	Putative flavodoxin; similar to S. cerevisiae Ypl207p; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	478383	479218	-	orf19.3471	478383	479218	1	479218	478383	479034	478693		orf19.10975|IPF23800.1|IPF12047.2|Contig4-2835_0024|orf6.4988|orf6.963|CA0242|CaO19.3471|IPF12047	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	479180	481249	+	orf19.3473	479180	481249	1	479180	481249	479519	481168		orf19.10977|IPF12049.2|IPF12048.3|Contig4-2835_0023|orf6.4986|orf6.965|CA2905|CaO19.3473|IPF12049	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	481282	483033	-	orf19.3474	481282	483033	1	483033	481282	482963	481371	IPL1	orf19.10978|IPF23787.1|IPF12051.2|Contig4-2624_0002|Contig4-2835_0022|orf6.4985|CA2904|CaO19.10978|CaO19.3474	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	481516	481699	+	ntar_1003	481516	481699	1	481516	481699	481577	481699			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	485207	485580	-	ntar_1004	485207	485580	1	485580	485207					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	486337	487385	+	orf19.3475	486337	487385	1	486337	487385	486570	487130		orf19.10979|IPF11725|IPF11725.2|IPF12058.2|Contig4-2835_0016|orf6.432|orf6.4984|CA2903|CaO19.3475	Described as a Gag-related protein; hyphal induced; downregulation correlates with clinical development of fluconazole resistance; repressed by nitric oxide, 17-beta-estradiol, ethynyl estradiol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	489079	491552	+	orf19.3476	489079	491552	1	489079	491552	489921	491222		orf19.10980|IPF23792.1|IPF11729.2|Contig4-1746_0004|Contig4-2835_0008|orf6.4983|CA2902|HRR25|CaO19.10980|CaO19.3476	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	491396	493382	-	orf19.3477	491396	493382	2	493382|492993	493102|491396	493340	491532		orf19.10981|IPF23776.1|IPF23791.1|IPF11731.2|IPF11730.2|Contig4-2835_0006|orf6.4982|CA2901|PUS1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	493128	493313	+	ntar_1005	493128	493313	1	493128	493313					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	493455	494281	+	orf19.3478	493455	494281	1	493455	494281	493633	494178	NIP7	orf19.10982|IPF23795.1|IPF11733.2|Contig4-2835_0001|orf6.4981|CA2900|CaO19.10982|CaO19.3478	Protein described as a nucleolar protein with role in ribosomal assembly; hyphal induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	494246	495846	-	orf19.3480	494246	495846	1	495846	494246	495792	494341		orf19.10984|IPF23789.1|IPF17681.2|Contig4-1435_0004|orf6.4979|CA2899|CaO19.10984|RSM23|CaO19.3480|IPF17681	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	496091	499011	+	orf19.3481	496091	499011	1	496091	499011	496121	497788		orf19.10985|IPF23785.1|IPF15646.2|Contig4-2024_0003|orf6.4978|CA2898|CaO19.10985|CaO19.3481|IPF15646	Putative protein of unknown function, transcription is activated in the presence of elevated CO2; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	499192	500833	+	orf19.3482	499192	500833	1	499192	500833	499269	500660		orf19.10986|IPF23790.1|IPF14979.2|Contig4-2065_0003|orf6.4977|CA2897|CaO19.10986|NPY1|CaO19.3482|IPF14979	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	501440	502924	+	orf19.3483	501440	502924	1	501440	502924	501608	502825		orf19.10987|IPF23793.1|IPF14981.2|Contig4-2065_0001|orf6.4976|CA2896|CaO19.3483|CaO19.10987|IPF14981	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	503322	507351	+	orf19.5510	503322	507351	1	503322	507351	503452	507309		orf19.12956|IPF21645.1|IPF19759.1|Contig4-2439_0001|Contig4-2439_0002|orf6.4452|CA2515|CaO19.12956|CaO19.5510|IPF19759	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	507321	508273	-	orf19.5513	507321	508273	1	508273	507321	508241	507381		orf19.12959|IPF21606.1|IPF4310.1|Contig4-2439_0003|orf6.4455|CA2516|PRP45|CaO19.12959|CaO19.5513|IPF4301	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	508921	509905	+	orf19.5514	508921	509905	1	508921	509905	509019	509822		orf19.12960|IPF21610.1|IPF4311.2|Contig4-2439_0005|orf6.4456|CA2517|CaO19.5514|CaO19.12960|IPF4311	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	509827	510958	-	orf19.5515	509827	510958	1	510958	509827	510906	509926		orf19.12961|IPF21602.1|IPF4312.2|Contig4-2439_0006|orf6.4457|CA2518|CaO19.12961|CBP3|CaO19.5515	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	511155	513300	+	orf19.5516	511155	513300	1	511155	513300	511198	513105		orf19.12962|IPF21582.1|IPF4313.2|orf6.4458|CA2519|SRP72|CaO19.5516|CaO19.12962	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	513497	516800	-	orf19.5518	513497	516800	1	516800	513497	516545	515805		orf19.12964|IPF16093.2|IPF4317.1|Contig4-1777_0004|Contig4-2188_0004|orf6.4460|orf6.745|CA2521|CaO19.5518|IPF4317	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	514179	515803	+	orf19.5517	514179	515803	1	514179	515803	514411	515520		orf19.12963|IPF20046.1|IPF20104.1|Contig4-1777_0002|Contig4-2188_0003|orf6.4459|orf6.746|CA2520|ADH7|CaO19.5517|IPF20104	Similar to alcohol dehydrogenases; increased transcription is observed upon benomyl treatment; induced by nitric oxide; induced in core stress response; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	516198	516618	+	ntar_1006	516198	516618	1	516198	516618	516259	516408			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	517614	517987	+	ntar_1007	517614	517987	1	517614	517987	517829	517987			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	517705	519178	-	orf19.5519	517705	519178	1	519178	517705	519054	517870	GCV1	orf19.12965|orf6.774|IPF16091.1|IPF4318.2|orf6.4461|orf6.744|CA2522	Protein described as T subunit of glycine decarboxylase; transcription is negatively regulated by Sfu1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	519397	519843	-	orf19.5520	519397	519843	1	519843	519397	519843	519397	ASG7	orf19.12966|IPF16090.2|IPF4319.1|Contig4-2690_0015|orf6.4462|orf6.743|CA2523|CaO19.5520|IPF4319	Predicted ORF in Assemblies 19, 20 and 21; specific to a-cells; transcription is induced in response to alpha pheromone in SpiderM medium; member of conserved Mcm1p regulon [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	520749	521827	+	orf19.5521	520749	521827	1	520749	521827	520904	521713	ISA1	orf19.12967|orf6.4463|IPF21609.1|IPF4322.1|Contig4-2690_0011|CA2524|CaO19.5521|CaO19.12967|IPF4322	Reported to have possible role in iron-sulfur cluster biogenesis or cytoplasm-to-mitochondrion iron transport; alkaline downregulated; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	521777	522492	-	orf19.5522	521777	522492	1	522492	521777	522447	521995		orf19.12968|Contig4-2690_0009|IPF21612.1|IPF4324.2|orf6.4464|CA2525|CaO19.12968|CaO19.5522|IPF4324|IPF4324.3	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	522648	523432	-	orf19.5523	522648	523432	1	523432	522648	523432	522752		orf19.12969|IPF4325.2|IPF27987.1|Contig4-2118_0003|Contig4-2690_0008|orf6.4465|orf6.873|CA0212|CaO19.5523|IPF4325	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	523600	524307	+	orf19.5524	523600	524307	1	523600	524307	523600	524307		orf19.12970|IPF4326.2|IPF27986.1|Contig4-2118_0002|Contig4-2690_0007|orf6.4466|orf6.872|CA0211|CaO19.5524|IPF4326	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	524580	525770	+	orf19.5525	524580	525770	1	524580	525770	524631	525677		orf19.12971|IPF4328|IPF4328.2|IPF27985.1|Contig4-2118_0001|Contig4-2690_0006|orf6.4467|orf6.871|CA0210|CaO19.5525	Protein abundance is affected by URA3 expression in the CAI-4 strain background; regulated by Efg1p and Efh1p; repressed by Rgt1p; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	525601	526748	-	orf19.5526	525601	526748	1	526748	525601	526727	525729	SEC20	orf19.12972|IPF19118.2|IPF4329.2|Contig4-2690_0005|orf6.4468|orf6.870|CA2526|CaO19.5526	Essential protein; similar to S. cerevisiae Sec20p; depletion causes membrane accumulation and drug sensitivity; expression regulated by growth phase; O-mannosylation regulates proteolysis; does not complement S. cerevisiae sec20-1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	526909	528664	+	orf19.5527	526909	528664	1	526909	528664	526931	528424		orf19.12973|IPF21588.1|IPF4331.1|Contig4-2690_0004|orf6.4469|CA2527|YMR285|NGL2|CaO19.5527|IPF4331	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ymr285p and Yml118p; gene transcribed divergently from SEC20 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	528239	529390	-	orf19.5528	528239	529390	1	529390	528239	529251	528430	MOB1	orf19.12974|IPF19269.2|IPF4332.1|Contig4-2690_0001|orf6.4470|orf6.454|CA2528|CaO19.5528|CaO19.12974	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G2/M phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	529643	532347	+	orf19.5530	529643	532347	1	529643	532347	529703	532213	NAB3	orf19.12976|IPF4338.2|IPF17959.3|Contig4-1760_0001|Contig4-1760_0002|orf6.1545|orf6.4471|orf6.452|CA0084|CaO19.5530	Predicted ORF in Assemblies 19, 20 and 21; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	532332	533942	-	orf19.5531	532332	533942	1	533942	532332	533889	532363	CDC37	orf19.12977|IPF17957.3|IPF4339.1|orf6.1546|orf6.451|CA0551|CaO19.5531	Chaperone for Crk1p; interacts with Crk1p kinase domain and with Sti1p; putative phosphorylation site at Ser14; functional homolog of S. cerevisiae Cdc37p; likely to be essential for growth; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	534150	534610	-	orf19.5532	534150	534610	1	534610	534150	534590	534225		orf19.12978|IPF21634.1|IPF4340.1|orf6.1547|CaO19.12978|CaO19.5532	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	534944	537562	-	orf19.5533	534944	537562	1	537562	534944	537435	535138		orf19.12979|IPF21578.1|IPF4343.2|orf6.1548|CA0552|CaO19.5533|VPS9|CaO19.12979|IPF4343	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	537798	539059	-	orf19.5534	537798	539059	1	539059	537798	538985	537933		orf19.12980|IPF21604.1|IPF16653.1|Contig4-1697_0002|orf6.1549|CA0553|CaO19.5534|IPF16653	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	539205	541116	-	orf19.5535	539205	541116	1	541116	539205	540796	539339		orf19.12981|IPF14381.1|IPF16655.3|Contig4-1697_0004|Contig4-2229_0002|Contig4-2229_0004|orf6.1141|orf6.1550|CA0332|FEN2|CaO19.5535	Predicted membrane transporter, member of the anion:cation symporter (ACS) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	540968	541335	+	ntar_1008	540968	541335	1	540968	541335					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	541743	543461	-	orf19.5536	541743	543461	1	543461	541743	543461	541743		orf19.12982|IPF14383.2|IPF27977.1|Contig4-2229_0001|orf6.1140|orf6.3630|CA6224|AMD21|CaO19.5536|AMD2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	547431	549261	-	orf19.5537	547431	549261	1	549261	547431	549062	547659		orf19.12983|IPF21592.1|IPF9126.1|Contig4-2737_0011|orf6.3629|CA1924|WSC2|CaO19.5537|IPF9126	Putative protein of unknown function; mRNA binds to She3p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	552141	553665	+	orf19.5539	552141	553665	1	552141	553665	552719	553561		orf19.12985|IPF18814.2|IPF9130.2|Contig4-2737_0004|orf6.2207|orf6.3627|CA1923|CaO19.5539|IPF9130	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	553576	556277	-	orf19.5541	553576	556277	1	556277	553576	556040	554106		orf19.12987|IPF9132.2|IPF27973.1|Contig4-2737_0003|orf6.2205|orf6.3625|YPL184|CA0969|CaO19.5541|IPF9132	Predicted ORF in Assemblies 19, 20 and 21; similar to S. pombe Nrd1p; transcription is induced upon induction of hyphal growth; regulated by Cph1p, Efg1p, Cph2p; low-level expression; alkaline upregulated; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	557602	558153	+	ntar_1009	557602	558153	1	557602	558153					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	558311	559567	-	orf19.5542	558311	559567	1	559567	558311	559567	558311	SAP6	orf19.12988|IPF12747.2|IPF9135.2|Contig4-2734_0005|orf6.2204|orf6.3624|CA0968|CaO19.5542	Secreted aspartyl proteinase; expressed upon hyphal growth, during oral carriage, mucosal, systemic infections; sap4 sap5 sap6 triple mutant has defects in systemic virulence, survival in macrophage, and protein utilization for nitrogen [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	561543	563978	-	orf19.5543	561543	563978	1	563978	561543	563978	561543		orf19.12989|IPF20070.1|IPF19863.2|Contig4-2830_0003|orf6.1300|CA0967|CaO19.5543|VPS183|VPS184	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr6	564434	566542	+	orf19.5544	564434	566542	1	564434	566542	564471	566414	SAC6	orf19.12990|orf19.12992|IPF18815.2|IPF8093.2|Contig4-1909_0001|orf6.1297|orf6.1299|orf6.2202|CA0408|CA0407|orf19.5546|IPF14432.2|SAC6.3f|SAC6.5f	Transcription is regulated by Nrg1p and Mig1p; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	566686	567207	+	orf19.5547	566686	567207	1	566686	567207	566751	567074		orf19.12993|IPF19861.2|IPF19862.1|Contig4-2173_0008|orf6.1296|CA0406|CaO19.5547|IPF19862.5f|CA0405|IPF19862.3f|IPF19861.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	567191	569129	-	orf19.5548	567191	569129	1	569129	567191	569040	567262		LYS14|orf19.12994|IPF21583.1|IPF14435.1|Contig4-2173_0005|Contig4-2173_0006|Contig4-2462_0002|orf6.1295|orf6.4118|CA0404|CaO19.5548	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Lys14p, which is a transcription factor involved in the regulation of lysine biosynthesis genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	569400	570125	+	orf19.5549	569400	570125	1	569400	570125	569428	570105		orf19.12995|IPF12637.1|IPF14438.1|Contig4-2173_0002|Contig4-2173_0003|Contig4-2462_0003|Contig4-2462_0004|orf6.1294|orf6.4119|CA2282|CaO19.5549|IPF14438	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	570281	571427	+	orf19.5550	570281	571427	1	570281	571427	570398	571090	MRT4	orf19.12996|IPF12634.2|IPF14441.2|Contig4-2462_0007|orf6.4120|CA2283|CaO19.12996|CaO19.5550	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to tubercidin (7-deazaadenosine); transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	571368	573178	-	orf19.5551	571368	573178	1	573178	571368	573084	571522	MIF2	orf19.12997|IPF21589.1|IPF12632.1|Contig4-2462_0009|Contig4-2462_0010|orf6.4121|CA2284|CaO19.12997|CaO19.5551	Centromere-associated protein; similar to CENP-C proteins; Cse4p and Mif2p colocalize at C. albicans centromeres [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	573433	575710	-	orf19.5552	573433	575710	1	575710	573433	575657	573450		orf19.12998|IPF21580.1|IPF12629.2|Contig4-2462_0013|orf6.4122|CA2285|CaO19.5552|CaO19.12998|IPF12629	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	576221	577187	+	orf19.5553	576221	577187	1	576221	577187	576424	576951		orf19.12999|IPF21615.1|IPF5369.2|orf6.4123|CA2286|CaO19.5553|CaO19.12999|IPF5369	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	577090	580759	-	orf19.5555	577090	580759	1	580759	577090	580595	577200		orf19.13001|IPF21642.1|IPF5373.2|Contig4-3002_0017|orf6.4125|CA2287|CaO19.5555|CaO19.13001|IPF5373	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	582808	583116	+	orf19.5556	582808	583116	1	582808	583116	582808	583116		orf19.13002|IPF21643.1|IPF28005.1|orf6.4126|CaO19.13002|CaO19.5556	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	583091	584510	-	ntar_1010	583091	584510	1	584510	583091	583788	583648			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	583682	586402	+	orf19.5557	583682	586402	1	583682	586402	583682	586300	MNN4-4	orf19.13003|orf6.4127|MNT4|IPF21572.1|IPF5376.2|Contig4-3002_0015|MNN4|CA2288|CaO19.13003|MNN45|CaO19.5557|IPF5376	Putative mannosyltransferase; transcription is upregulated in a mutant lacking the Ssk1p response regulator proteinor in a nik1 homozygous null mutant, but not in chk1 or sln1 null mutants; pheromone induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr6	584950	585608	-	ntar_1011	584950	585608	1	585608	584950					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	586454	588485	-	orf19.5558	586454	588485	1	588485	586454	588152	586548	RBF1	orf19.13004|IPF5380.3|IPF27978.1|Contig4-3002_0014|orf6.3253|orf6.4128|CA2289|CaO19.5558|RBF1.3|IPF5380.2	Transcription factor; glutamine-rich activation domain; binds RPG-box DNA sequences; predominantly nuclear; antigenic during human oral infection; mutation causes accelerated induction of filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	588754	590289	+	orf19.5559	588754	590289	1	588754	590289	588852	589919	STE23	orf19.13005|IPF19660.2|IPF19661.1|Contig4-3002_0013|orf6.3252|orf6.4129|CA1654|CaO19.5559|IPF19660	Protein similar to S. cerevisiae Ste23p, which is involved in maturation of pheromone; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	590369	593818	+	orf19.5561	590369	593818	1	590369	593818	590389	593712	RAV2	orf19.13007|IPF21644.1|IPF5385.2|Contig4-3002_0010|orf6.3250|CA1653|CaO19.5561|STE23|CaO19.13007	Protein similar to S. cerevisiae Rav2p, which is involved in acidification of the vacuole; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	594263	595245	+	orf19.5563	594263	595245	1	594263	595245	594426	595127	RNH1	orf19.13009|IPF19318.2|IPF5387.1|Contig4-3002_0008|orf6.3247|orf6.3248|orf6.376|CA1652|RNH11|RNH1.exon1	Protein described as Ribonuclease H (RNAse H); hyphal-induced; flucytosine induced; similar to orf19.5564 (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	594523	595189	-	ntar_1012	594523	595189	1	595189	594523					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	595620	595859	+	ntar_1013	595620	595859	1	595620	595859					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	596314	597545	+	orf19.5564	596314	597545	1	596314	597545	596555	597253		orf6.3247|CA1651|orf19.13010|Contig4-3002_0007|RNH12|RNH1.exon2|IPF18639.1	Predicted ORF in Assemblies 19, 20 and 21; was merged with orf19.5563 by Annotation Working Group and subsequently reinstated; similar to RNH1 (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	597625	598876	-	orf19.5565	597625	598876	1	598876	597625	598758	597694		orf19.13011|IPF19317.2|IPF5389.2|Contig4-3002_0004|orf6.3246|orf6.377|CA1650|CaO19.5565|IPF5389	Putative 3-hydroxyisobutyrate dehydrogenase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	599767	601376	-	orf19.5566	599767	601376	1	601376	599767	601332	599971		orf19.13012|IPF21594.1|IPF5392.2|Contig4-3002_0002|Contig4-3002_0003|orf6.3245|CA1649|CaO19.13012|CaO19.5566|LAB1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	601435	602505	+	orf19.5567	601435	602505	1	601435	602505	601481	602320	POP4	orf19.13013|IPF21607.1|IPF16662.2|Contig4-3002_0001|orf6.3244|CA1648|CaO19.5567|CaO19.13013|IPF16662	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Pop4p, which is a subunit of both RNase MRP and nuclear RNase P; filament induced; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	602221	603366	-	orf19.5568	602221	603366	1	603366	602221	603302	602352	VPS51	orf19.13014|IPF12479.3|IPF16663.1|orf6.3243|orf6.1357|CA1647|CaO19.5568|IPF16663	Protein with a role in vacuolar function; null mutant has defect in damaging oral epithelial and vascular endothelial cells; required for normal hyphal growth and stress resistance; induced in presence of host oral or vascular cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	603496	606562	+	orf19.5569	603496	606562	3	603496|603672|606014	603592|605941|606562	603574	606523		orf19.13015|orf19.13017|IPF12473|IPF12478.1|IPF16667.3|Contig4-2518_0001|Contig4-2518_0002|orf6.1358|orf6.1360|orf6.3242|CA0439|orf19.5571|SCRC1|CA0440|IPF12473.2|IPF12478	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	606535	608295	-	orf19.5572	606535	608295	1	608295	606535	608019	606721		orf19.13018|IPF12472.2|IPF27979.1|Contig4-2518_0003|orf6.1361|CA0441|CaO19.13018|CaO19.5572|IPF12472	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	608310	608569	+	ntar_1014	608310	608569	1	608310	608569	608314	608475			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	608853	609935	-	orf19.5573	608853	609935	1	609935	608853	609935	608853		orf19.13019|IPF18988.2|IPF12470.2|Contig4-2518_0004|Contig4-2518_0005|orf6.1362|orf6.1720|CA0656|HRQ4|CaO19.5573|IPF12470	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	610230	610449	-	ntar_1015	610230	610449	1	610449	610230					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	610516	612037	+	orf19.5574	610516	612037	1	610516	612037	610556	611752		orf19.13020|IPF21600.1|IPF19877.1|Contig4-2518_0008|orf6.1721|CA0657|CaO19.5574|IPF19877	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	611763	613604	-	orf19.5575	611763	613604	1	613604	611763	613501	611882		orf19.13021|IPF21586.1|IPF16505.2|Contig4-1786_0007|Contig4-1786_0008|Contig4-2518_0009|orf6.1722|CA0658|PEX25|CaO19.5575|IPF16505	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	614198	616466	-	orf19.5576	614198	616466	1	616466	614198	616211	614547		orf19.13022|orf19.13023|IPF21625.1|IPF16507.2|Contig4-1786_0001|orf6.1723|orf6.1724|YDR531W|CA0659|CA0660|orf19.5577|IPF16189.3f	Protein similar to S. cerevisiae Ydr531wp; transposon mutation affects filamentous growth; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	618014	619884	+	orf19.5578	618014	619884	1	618014	619884	618073	619764		orf19.13024|IPF17542.3|IPF27975.1|orf6.1645|orf6.1725|CA0611|CaO19.5578|IPF17542|IPF17542.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	619895	621110	-	orf19.5579	619895	621110	1	621110	619895	621078	620272		orf19.13025|IPF21608.1|IPF17545.2|Contig4-2246_0001|Contig4-2246_0002|orf6.1646|CA0612|CaO19.5579|CaO19.13025|IPF17545	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	621290	630018	+	orf19.5580	621290	630018	1	621290	630018	621290	629911		orf19.13026|IPF21605.1|IPF15888.3|orf6.1647|orf6.4422|CA2497|TEL1|CaO19.5580|TEL1.3eoc|IPF15888.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr6	630611	633043	+	orf19.5584	630611	633043	1	630611	633043	630611	633043	PEP3	orf19.13030|IPF21577.1|IPF19951.1|Contig4-2734_0001|orf6.4426|CA2498|CaO19.5584|VPS181	Peptidase; activity useful for strain identification by multilocus enzyme electrophoresis (MLEE); clade-associated gene expression [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr6	635336	636592	+	orf19.5585	635336	636592	1	635336	636592	635336	636592	SAP5	orf19.13032|IPF21596.1|IPF6816.1|Contig4-2830_0009|orf6.4427|CA2499|CaO19.5585|CaO19.13032	Secreted aspartyl proteinase; sap4 sap5 sap6 triple mutant has defects in virulence and utilization of protein as N source; expressed in mucosal and systemic infections; absent from C. dubliniensis; mRNA is localized to hyphal tip via She3p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr6	637322	640411	-	orf19.5586	637322	640411	1	640411	637322	640365	637417		orf19.13033|IPF21569.1|IPF6814.1|Contig4-2830_0010|orf6.4428|CA2500|FIG4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	640497	642229	-	orf19.5587	640497	642229	1	642229	640497	641999	640599		orf19.13034|IPF21593.1|IPF6812.2|Contig4-2830_0011|Contig4-2830_0013|orf6.4429|CA2501|CaO19.5587|IPF6812	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	643694	645919	+	orf19.5588	643694	645919	1	643694	645919	643694	645919	PGA60	orf19.13035|IPF20061.1|IPF20103.1|Contig4-2698_0010|orf6.1759|orf6.4430|CA2502|CaO19.5588|IPF20103	Putative GPI-anchored protein of unknown function; hyphal-induced expression [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	646325	646648	-	orf19.5589	646325	646648	1	646648	646325	646648	646325		IPF28003.1|orf6.4431|CaO19.5589	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	646776	647893	-	orf19.5591	646776	647893	1	647893	646776	647819	646776	ADO1	orf19.13037|IPF6804.2|IPF27983.1|Contig4-2698_0008|orf6.1761|orf6.4433|CA0685|CaO19.5591	Putative protein of unknown function; heterozygous null mutant exhibits resistance to cordycepin in the C. albicans fitness test; ketoconazole-induced; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	648633	650654	+	orf19.5592	648633	650654	1	648633	650654	648633	650654		orf19.13038|IPF16583.2|IPF6803.1|Contig4-2698_0007|orf6.1762|orf6.4434|orf6.4435|CA2503|CA2504|orf19.5593|IPF6803.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	651917	653952	+	orf19.5595	651917	653952	1	651917	653952	652332	653891	SHE3	orf19.13040|IPF16588.3|IPF6796.2|Contig4-2698_0002|orf6.4437|CA2505|CaO19.13040|CaO19.5595|IPF6796	mRNA-binding protein that localizes specific mRNAs to daughter yeast-form cells and to hyphal tips; required for normal filamentous growth and host epithelial cell damage; ortholog of S. cerevisiae She3p but set of target mRNAs differs [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	653872	655123	-	orf19.5596	653872	655123	1	655123	653872	655101	653968		orf19.13041|IPF17371.2|IPF6794.2|Contig4-2698_0001|orf6.4438|orf6.971|CA2506|CaO19.5596|IPF6794	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	655260	658567	+	orf19.5597	655260	658567	1	655260	658567	655323	658490	POL5	orf19.13042|IPF6793.3|Contig4-3004_0007|orf6.4439|orf6.5074|orf6.972|CA0245|CA6298|orf19.5598|POL5.5f|IPF17372.2	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	658687	659349	+	orf19.5597.1	658687	659349	1	658687	659349	658776	658967			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	659162	661634	-	orf19.5599	659162	661634	1	661634	659162	661595	659244	MDL2	orf19.13043|IPF20121.1|Contig4-2108_0001|orf6.170|orf6.973|orf6.5073|orf6.5072|CA2972|CA2971|orf19.5600|MDL2.3f	Putative mitochondrial, half-size MDR-subfamily ABC transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	661800	663171	-	orf19.5601	661800	663171	1	663171	661800	663171	661948		orf19.13044|IPF19412.2|IPF14448.2|Contig4-2108_0002|orf6.171|orf6.5071|CA2970|CaO19.5601|IPF14448	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	661858	662157	+	ntar_1016	661858	662157	1	661858	662157					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	663300	665386	-	orf19.5602	663300	665386	1	665386	663300	665322	663382	BMT6	orf19.13045|IPF21591.1|IPF19772.1|Contig4-2108_0003|orf6.5070|CA2969|WRY2|CaO19.5602|IPF19772	Putative beta-mannosyltransferase, member of a 9-gene family that includes characterized genes BMT1, BMT2, BMT3, and BMT4 with roles in beta-1,2-mannosylation of cell wall phosphopeptidomannan; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	666548	668242	-	orf19.5604	666548	668242	1	668242	666548	668242	666548	MDR1	orf19.13047|BENR|BMR1|Contig4-1827_0002|BEN|IPF21587.1|IPF16346.2|orf6.5068|CA2968|BEN1|CaO19.13047|CaO19.5604	Multidrug efflux pump of plasma membrane; member of the MDR family of major facilitator transporter superfamily; methotrexate is preferred substrate; overexpression in drug-resistant clinical isolates confers fluconazole resistance [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	669112	669411	+	ntar_1017	669112	669411	1	669112	669411					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	669357	672602	-	orf19.5605	669357	672602	1	672602	669357	672439	669449		orf19.13048|IPF21655.1|IPF12513.2|orf6.5067|CA2967|CaO19.5605|CaO19.13048|IPF12513	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	672990	673310	-	orf19.5606	672990	673310	1	673310	672990	673310	672990		orf19.13049|IPF16438.2|IPF28008.1|Contig4-2044_0003|orf6.5066|orf6.94|CaO19.5606	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	674186	675441	+	orf19.5607	674186	675441	1	674186	675441	674328	675269		orf19.13050|IPF16435.3|IPF16278.1|Contig4-1929_0002|orf6.5065|orf6.93|CA6225|CaO19.5607|IPF16278	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	675292	676484	-	orf19.5608	675292	676484	1	676484	675292	676416	675424		orf19.13051|IPF21599.1|IPF16279.2|Contig4-1929_0001|orf6.5064|CA2966|CaO19.5608|RPC34|CaO19.13051	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	676541	677778	+	orf19.5609	676541	677778	1	676541	677778	676630	677715		orf19.13052|IPF21598.1|IPF13174.2|Contig4-2392_0011|orf6.5063|CA2965|CaO19.13052|CaO19.5609|IPF13174	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	678014	679231	+	orf19.5610	678014	679231	1	678014	679231	678124	679161	ARG3	orf19.13053|IPF21601.1|IPF13176.2|Contig4-2392_0010|orf6.5062|CA2964|CaO19.13053|CaO19.5610|IPF13176.3	Alkaline downregulated; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	679563	680594	+	orf19.5611	679563	680594	1	679563	680594	679563	680594		orf19.13054|IPF21597.1|IPF13178.2|Contig4-2392_0005|Contig4-2392_0007|orf6.5061|CA2963|CaO19.13054|GRE21|CaO19.5611|GRP3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	681023	681247	-	ntar_1018	681023	681247	1	681247	681023					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	682711	685269	+	orf19.5612	682711	685269	1	682711	685269	682872	685241	BMT4	orf19.13055|IPF15015.2|IPF13180.3|Contig4-2391_0004|orf6.1045|orf6.5060|orf6.728|CA0276|CaO19.5612|WRY1|IPF15015	Putative beta-mannosyltransferase, required for elongation of beta-mannose chains on the acid-labile fraction of cell wall phosphopeptidomannan; member of a 9-gene family; regulated by Tsa1p, Tsa1Bp [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	683536	683783	-	ntar_1019	683536	683783	1	683783	683536					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	685750	686858	+	orf19.5614	685750	686858	1	685750	686858	685914	686771		orf19.13057|IPF12328.2|IPF15019.1|Contig4-2391_0003|orf6.1047|orf6.726|CA0277|RNH11|CaO19.5614|RNH1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	686817	687978	-	orf19.5615	686817	687978	1	687978	686817	687829	686936	AYR2	orf19.13060|IPF21613.1|IPF15021.2|Contig4-2391_0002|orf6.1049|orf6.4774|orf6.725|CA0163|CaO19.5615	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	688419	689228	+	orf19.5616	688419	689228	1	688419	689228	688419	689228		orf19.13061|IPF16804.1|IPF19168.1|Contig4-1981_0003|orf6.4775|orf6.724|CA0162|CaO19.5616|IPF19168	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	689412	691098	+	orf19.5617	689412	691098	1	689412	691098	689479	690918		orf19.13062|IPF16806.1|IPF19169.2|Contig4-1981_0001|orf6.4776|orf6.723|CA2753|CaO19.5617|IPF16806	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	690967	693124	-	orf19.5618	690967	693124	1	693124	690967	692998	691040		orf19.13063|IPF12432.2|IPF27971.1|Contig4-2504_0008|orf6.4777|CA2754|VPS45|CaO19.5618|CaO19.13063	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	693546	693788	-	ntar_1020	693546	693788	1	693788	693546					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	693572	695997	+	orf19.5619	693572	695997	1	693572	695997	693815	695932		orf19.13064|IPF12435.2|IPF19389.2|Contig4-2504_0006|orf6.213|orf6.4778|CA2755|LPF39|CaO19.5619|IFA12	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	694341	695948	-	ntar_1021	694341	695948	1	695948	694341	694605	694363			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	696296	697655	+	orf19.5620	696296	697655	1	696296	697655	696408	697337		orf19.13065|IPF18418.1|IPF12436.3|Contig4-2504_0003|orf6.212|orf6.4779|CA2756|PHZ1|CaO19.5620|IPF18418	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); increased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	697147	700081	-	orf19.5621	697147	700081	1	700081	697147	700043	697278		orf19.13066|IPF19767.1|IPF27969.1|Contig4-2504_0001|Contig4-2504_0002|Contig4-2504_0009|orf6.4780|CA2757|CaO19.5621|CaO19.13066|IPF19767	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	700283	702701	-	orf19.5622	700283	702701	1	702701	700283	702416	700362	GLC3	orf19.13067|IPF16449.2|IPF13786.3|Contig4-2165_0001|orf6.204|orf6.4781|CA2758|GLC3.3f	Protein described as similar to 1,4-glucan branching enzyme; fluconazole-induced; shows colony morphology-related gene regulation by Ssn6p; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	703047	703217	+	ntar_1022	703047	703217	1	703047	703217					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	703144	704904	-	orf19.5623	703144	704904	1	704904	703144	704853	703444	ARP4	orf19.13069|IPF13789.2|IPF19829.2|Contig4-2165_0005|orf6.203|orf6.4783|CA6299|CA2759|orf19.5624|ARP4.3f	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	703428	703716	+	ntar_1023	703428	703716	1	703428	703716					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	705084	705922	-	orf19.5625	705084	705922	1	705922	705084	705675	705142		orf19.13070|IPF13790.1|IPF19156.2|Contig4-2165_0007|orf6.4784|orf6.737|CA6226|CaO19.5625|IPF19156|CA2760|IPF13790	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	707142	707345	-	ntar_1024	707142	707345	1	707345	707142					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	709627	711704	+	orf19.5626	709627	711704	1	709627	711704	710237	711466		orf19.13071|IPF15013.2|IPF27980.1|Contig4-2416_0007|orf6.4785|CA2761|CaO19.5626|IPF15013	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	712075	713591	+	orf19.5627	712075	713591	1	712075	713591	712332	713438		orf19.13072|IPF15012.2|IPF27981.1|Contig4-2416_0004|orf6.4786|CA2762|CaO19.5627|IPF15012	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	713548	713904	-	ntar_1025	713548	713904	1	713904	713548					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	714521	715832	+	orf19.5628	714521	715832	2	714521|714802	714681|715832	714650	715699		orf19.13073|IPF21603.1|IPF16773.2|Contig4-2416_0002|orf6.4787|CA2763|DIC1.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	715757	716478	-	orf19.5629	715757	716478	1	716478	715757	716405	716022	QCR7	orf19.13074|IPF21627.1|IPF16775.2|orf6.4788|CA2764|CaO19.5629|CaO19.13074	Protein described as ubiquinol-cytochrome-c reductase, subunit 7 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	716517	717819	-	orf19.5630	716517	717819	1	717819	716517	717762	716662	APA2	orf19.13075|IPF18417.1|IPF27984.1|orf6.4789|CA2765|CaO19.5630	Protein described as ATP adenylyltransferase II; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	717985	720214	+	orf19.5701	717985	720214	1	717985	720214	718017	720212		orf19.13076|orf19.13124|IPF18416.1|IPF27982.1|IPF21471.1|IPF8472.2|orf6.4790|orf6.4631|CA2766|CA2653|orf19.5631|CaO19.13124|CaO19.5701|IPF8472.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	719806	725166	-	orf19.5702	719806	725166	1	725166	719806	725138	720336		orf19.13125|IPF21483.1|IPF8474.2|Contig4-2811_0027|orf6.4632|CA2654|CPS2|CaO19.13125|CaO19.5702|IPF8474	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	725489	727952	+	orf19.5704	725489	727952	1	725489	727952	725539	727845		orf19.13127|IPF17898.2|IPF8477.1|Contig4-2522_0007|orf6.151|orf6.4634|CA2655|CaO19.5704|IPF8477	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	727883	730772	-	orf19.5705	727883	730772	1	730772	727883	730726	727952	NAM2	orf19.13128|IPF17896.2|IPF19955.1|Contig4-2522_0005|Contig4-2522_0006|orf6.150|orf6.4635|CA2656|CaO19.5705	Putative mitochondrial leucyl-tRNA synthetase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	730940	734587	+	orf19.5710	730940	734587	1	730940	734587	731023	734508		orf19.13133|IPF21499.1|IPF8486.2|orf6.4640|CA2657|NUP1|CaO19.5710|IPF8486	Putative protein of unknown function; mRNA binds to She3p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	736412	736967	-	ntar_1026	736412	736967	1	736967	736412	736709	736557			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	736573	736803	+	ntar_1027	736573	736803	1	736573	736803					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	737082	739582	+	orf19.5711	737082	739582	1	737082	739582	737504	739369		orf19.13134|IPF16951.2|IPF8105.1|Contig4-2608_0003|orf6.4641|orf6.532|CA2658|CaO19.5711|CSR1|IPF8105	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	740062	742009	+	orf19.5713	740062	742009	1	740062	742009	740062	741930	YMX6	orf19.13136|IPF21452.1|IPF8102.2|Contig4-2608_0005|orf6.4643|CA2659|NDE1|NDH2|CaO19.5713|NDE2|CaO19.13136	Protein described as NADH dehydrogenase; macrophage-downregulated gene; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	741886	743614	-	orf19.5714	741886	743614	1	743614	741886	743271	742096	SAP1	orf19.13137|PRA10|CAP|PEP1|PEP10|OP1A|IPF21467.1|IPF8101.2|Contig4-2608_0006|orf6.4644|CA2660|CaO19.5714|CaO19.13137	Secreted aspartyl proteinase; acts in utilization of protein as nitrogen source; virulence role in mouse or guinea pig systemic infection, human or rat vaginal epithelium; regulated by growth phase, alpha-pheromone; produced by opaque cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	745130	746383	-	orf19.5716	745130	746383	1	746383	745130	746383	745130	SAP4	orf19.13139|IPF21464.1|IPF8099.1|Contig4-2038_0003|orf6.3803|CA2055|CaO19.13139|CaO19.5716	Secreted aspartyl proteinase; sap4 sap5 sap6 triple mutant has defects in systemic virulence (mouse, guinea pig), survival in macrophage, and protein utilization for nitrogen; expressed during mucosal and systemic infections, oral carriage [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	747133	747480	-	orf19.5717	747133	747480	1	747480	747133	747480	747133		orf19.13140|IPF21501.1|IPF8098.3|orf6.3802|CaO19.13140|CaO19.5717	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	748346	750781	-	orf19.5718	748346	750781	1	750781	748346	750781	748346		orf19.13141|IPF11032.1|IPF21445.1|IPF19938.1|Contig4-1709_0001|Contig4-1709_0003|orf6.2203|orf6.3801|orf6.4426|orf6.513|orf6.621|CA0135|CA2054|orf19.1019|CaO19.5718|VPS182|VPS183|CaO19.13141	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.1019 in Assembly 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr6	751203	751365	+	ntar_1028	751203	751365	1	751203	751365					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	751377	752244	-	orf19.5719	751377	752244	1	752244	751377	752057	751656		orf19.13142|IPF11030.2|Contig4-2277_0005|orf6.622|orf6.3800|orf19.1020|CaO19.13142|CaO19.5719	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 and merged with orf19.1020 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	752354	754071	+	orf19.5720	752354	754071	1	752354	754071	752525	753922		orf19.13143|IPF21461.1|IPF11029.2|Contig4-2277_0003|orf6.3799|CA2053|CaO19.5720|CaO19.13143|IPF11029	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS); ketoconazole or caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	753879	755745	-	orf19.5722	753879	755745	1	755745	753879	755643	754024		orf19.13145|IPF21455.1|IPF11027.2|Contig4-2277_0001|orf6.3797|CA2052|CaO19.13145|CaO19.5722|IPF11027	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	756826	759084	+	orf19.5723	756826	759084	1	756826	759084	756971	758962	POX1	orf19.13146|IPF21449.1|IPF11025.2|POX1-2|Contig4-3044_0020|Contig4-3044_0021|orf6.3796|CA2051|POX105|CaO19.13146|CaO19.5723|PXP5	Predicted acyl-CoA oxidase; expression is regulated upon white-opaque switching; upregulated upon phagocytosis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	759178	759900	+	orf19.5724	759178	759900	1	759178	759900	759178	759900			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	760086	762407	+	orf19.5725	760086	762407	1	760086	762407	760117	762378		orf19.13148|IPF12982.2|IPF18406.1|IPF18407.1|Contig4-3044_0018|orf6.3794|orf6.4904|orf6.4905|CA2049|CA6300|orf19.5726|IPF12982.5f|IPF12982	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	762168	762936	-	orf19.5727	762168	762936	1	762936	762168	762899	762210		orf19.13149|IPF18553.1|IPF12981.2|Contig4-3044_0017|orf6.3793|orf6.4906|CA2841|CaO19.5727|IPF12981	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	763122	764938	-	orf19.5728	763122	764938	1	764938	763122	764938	763358		orf19.13150|IPF12980.3|IPF13156.2|Contig4-3044_0016|orf6.4907|CA2843|ALK1|CaO19.5728|ALK5.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	767847	769811	+	orf19.5729	767847	769811	1	767847	769811	767847	769811	FGR17	orf19.13151|IPF21450.1|IPF13158.2|Contig4-3044_0013|orf6.4908|CA2844|YNA2|CaO19.5729|CaO19.13151|IPF13158	Putative DNA-binding transcription factor; has zinc cluster DNA-binding motif; lacks an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr6	769709	771703	-	orf19.5730	769709	771703	1	771703	769709	771412	769871		orf19.13152|IPF21458.1|IPF10782.2|Contig4-3044_0011|orf6.4909|CA2845|CaO19.13152|CaO19.5730|IPF10782	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	771822	772755	+	orf19.5731	771822	772755	1	771822	772755	771996	772685	PAD1	orf19.13153|IPF21475.1|IPF10783.2|Contig4-3044_0010|orf6.4910|CA2846|CaO19.13153|CaO19.5731	Protein described as phenylacrylic acid decarboxylase; repressed by Rgt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	772925	775304	+	orf19.5732	772925	775304	2	772925|774401	773799|775304	772990	775192	NOG2	orf19.13154|orf19.13155|IPF21470.1|IPF10785.2|Contig4-3044_0008|Contig4-3044_0009|orf6.4911|orf6.4912|CA2847|orf19.5733|CA2848|IPF10785.exon2|IPF10786.2|IPF10785.exon1	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	775244	776849	-	orf19.5734	775244	776849	1	776849	775244	776769	775291		orf19.13156|IPF21459.1|IPF10787.2|Contig4-3044_0007|orf6.4913|CA2849|CaO19.13156|POP2|CaO19.5734	Putative protein of unknown function; heterozygous null mutant exhibits resistance to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	776961	778322	-	orf19.5735	776961	778322	1	778322	776961	778263	777073	CDC50	orf19.13157|IPF21465.1|IPF10789.2|Contig4-3044_0005|orf6.4914|CA2850|CaO19.5735	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	779983	780732	-	orf19.5735.3	779983	780732	1	780732	779983	780732	780436		IPF19628.1|CA2851|Tca5c	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	781739	781953	+	ntar_1029	781739	781953	1	781739	781953					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	782055	782213	+	ntar_1030	782055	782213	1	782055	782213					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	782616	786659	+	orf19.5736	782616	786659	1	782616	786659	782616	786659	ALS5	orf19.13158|ALA1|ALS99|IPF21493.1|IPF19771.1|Contig4-2957_0018|Contig4-3044_0001|orf6.4915|CA2852|CaO19.5736	Adhesin; ALS family protein; highly variable; expression in S. cerevisiae causes adhesion to human epithelium, endothelium or ECM, endothelial invasiveness by endocytosis, and, at high abundance, ECM-induced aggregation; has amyloid domain [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr6	790740	795254	+	orf19.5741	790740	795254	1	790740	795254	791472	795254	ALS1	orf19.13163|IPF21498.1|IPF13002.2|Contig4-2848_0008|orf6.1115|CA0316|CaO19.5741|ALS1.3eoc|IPF13002.1	Adhesin; ALS family of cell-surface glycoproteins; adhesion, virulence roles; immunoprotective; in band at hyphal base; amyloid domain; biofilm-induced; Rfg1p, Ssk1p, growth-regulated; strain background affects expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr6	797443	803770	+	orf19.5742	797443	803770	1	797443	803770	798023	803695	ALS9	orf19.13164|orf19.13168|IPF19916.1|IPF9917.1|IPF19856.2|IPF27935.1|IPF27926.1|Contig4-2858_0002|Contig4-2858_0004|orf6.2924|ALS9-1|ALS9-2|CA0315|CA1426|orf19.45|orf19.5745|ALS11|ALS9.5f|ALS9.5eoc|orf6.1114|IPF19856.1	ALS family protein; expressed during infection of human epithelial cells; confers laminin adhesion to S. cerevisiae; highly variable; ALS family includes cell-surface glycoproteins, some with adhesin function; putative GPI-anchor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	803571	804137	-	ntar_1031	803571	804137	1	804137	803571					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	804337	807368	+	orf19.5746	804337	807368	1	804337	807368	804378	807287	ALA1	orf19.13169|IPF21506.1|IPF9914.1|Contig4-2858_0005|SYA1|orf6.2925|CA1427|CaO19.5746|CaO19.13169|IPF9914	Alanyl-tRNA synthetase; translational regulation generates cytoplasmic and mitochondrial forms; regulated by Gcn4p; repressed upon amino acid starvation (3-AT); translation-related genes downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	807311	808913	-	orf19.5747	807311	808913	1	808913	807311	808842	807460		orf19.13170|IPF15124.2|IPF27934.1|Contig4-2858_0007|orf6.2926|CA1428|MRP4|CaO19.5747|CaO19.13170	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	809008	809909	+	orf19.5748	809008	809909	1	809008	809909	809008	809625		orf19.13171|IPF15123.1|IPF18840.2|Contig4-2858_0008|orf6.2093|orf6.2927|CA1429|CaO19.5748|IPF15123	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr6	809441	810419	-	orf19.5749	809441	810419	1	810419	809441	810326	809661	SBA1	orf19.13172|orf6.2092|IPF18677.2|IPF15122.2|Contig4-2858_0009|orf6.2928|CA0896|CaO19.5749	Similar to co-chaperones; transcriptionally regulated by iron; expression greater in high iron; farnesol-, heavy metal (cadmium) stress-induced; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	810631	812252	-	orf19.5750	810631	812252	1	812252	810631	812212	810800	SHM2	orf19.13173|orf6.2091|SHMII|IPF21460.1|IPF15120.2|Contig4-2858_0010|CA0895|CaO19.5750|CaO19.13173	Cytoplasmic serine hydroxymethyltransferase; complements the glycine auxotrophy of an S. cerevisiae shm1 null shm2 null gly1-1 triple mutant; antigenic in human; soluble protein in hyphae; farnesol-upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	813209	814483	-	orf19.5751	813209	814483	1	814483	813209	814324	813518	ORM1	orf19.13174|IPF21473.1|IPF13514.2|Contig4-2419_0002|orf6.2090|CA0894|CaO19.13174|CaO19.5751	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to aureobasidin A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	815149	817187	-	orf19.5752	815149	817187	1	817187	815149	817145	815232		orf19.13175|IPF21451.1|IPF13517.3|Contig4-2419_0001|orf6.1417|orf6.2089|CA0893|CaO19.5752|IPF13517|IPF13517.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	817315	819351	-	orf19.5753	817315	819351	1	819351	817315	819168	817528	HGT10	orf19.13176|orf6.1416|STL1|IPF19866.1|IPF27933.1|CA0472|CaO19.5753|CaO19.13176	Glycerol permease involved in glycerol uptake; member of the major facilitator superfamily; induced by osmotic stress, at low glucose in rich media, during cell wall regeneration; 12 membrane spans [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	822798	824769	-	orf19.5754	822798	824769	1	824769	822798	824678	822828		orf19.13177|IPF18996.2|IPF17358.2|orf6.1301|orf6.1415|orf6.557|CA0112|CaO19.5754|IPF17358	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	825402	825805	+	ntar_1032	825402	825805	1	825402	825805					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	826572	828345	+	orf19.5755	826572	828345	1	826572	828345	826857	828194		orf19.13178|IPF21462.1|IPF15067.1|Contig4-2302_0004|orf6.1302|CA0409|CaO19.13178|PHO80|CaO19.5755	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	828246	829290	-	orf19.5757	828246	829290	1	829290	828246	829270	828320		orf19.13180|IPF15065.2|IPF27936.1|Contig4-2302_0005|orf6.1304|CA0410|CaO19.5757|CaO19.13180|IPF15065	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	830102	832226	+	orf19.5758	830102	832226	1	830102	832226	830292	832007	SAL6	orf19.13181|IPF15064.3|IPF13917.1|Contig4-2302_0009|orf6.1305|orf6.6200|CA3829|CaO19.5758|PPQ1|CaO19.13181	Putative protein phosphatase of the Type 1 family (serine/threonine-specific), similar to S. cerevisiae Ppq1p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	832279	837058	-	orf19.5759	832279	837058	1	837058	832279	836962	832475	SNQ2	orf19.13182|IPF21486.1|IPF13913.2|Contig4-3087_0024|orf6.6199|CA3828|CaO19.5759|CaO19.13182	Protein similar to S. cerevisiae Snq2p transporter; member of PDR subfamily of ABC family; transposon mutation affects filamentation; benomyl-induced transcription; detected at yeast-form cell plasma membrane by mass spec [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	837238	837548	-	ntar_1033	837238	837548	1	837548	837238					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	838347	839747	-	orf19.5760	838347	839747	1	839747	838347	839640	838462	IHD1	orf19.13183|PGA36|IPF21466.1|IPF10662.2|Contig4-2056_0002|orf6.6198|orf6.6197|YMR317|CA3827|orf19.5761|CaO19.13183|CaO19.5760|IPF10662	Putative GPI-anchored protein of unknown function; alkaline upregulated; greater transcription in hyphal form than yeast form; regulated by Nrg1p, Rfg1p, Tup1p; regulated by Tsa1p, Tsa1Bp in minimal media at 37; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	841947	843131	-	orf19.5762	841947	843131	1	843131	841947	842679	842008	PGA61	orf19.13185|IPF21476.1|IPF20148.1|Contig4-3026_0024|orf6.6196|CA3826|CaO19.5762|CaO19.13185|IPF20148	Putative GPI-anchored protein of unknown function; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	843289	843361	-	ta(ugc)2	843289	843361	1	843361	843289				tA(UGC)2.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	844100	845057	+	orf19.5763	844100	845057	1	844100	845057	844153	844935		orf19.13186|IPF21472.1|IPF10654.2|Contig4-3026_0020|orf6.6195|CA3825|CaO19.13186|CaO19.5763|SPS19|IPF10654	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	844797	846175	-	orf19.5764	844797	846175	1	846175	844797	846141	844987	SKI8	orf19.13187|IPF21468.1|IPF10653.2|Contig4-3026_0019|orf6.6194|CA3824|CaO19.5764|CaO19.13187	Protein similar to S. cerevisiae Ski8p, which is required for repressing propagation of dsRNA viruses [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	846289	848919	+	orf19.5765	846289	848919	1	846289	848919	846348	848744		orf19.13188|IPF6983.2|IPF10651.2|Contig4-3026_0018|orf6.586|orf6.6193|CA3823|CaO19.5765|IPF10651	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	848640	849700	-	orf19.5767	848640	849700	1	849700	848640	849610	848759		orf19.13190|IPF19836.1|IPF20001.1|Contig4-3026_0017|orf6.584|orf6.6191|CA3822|CUS2|CaO19.5767	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	849836	851007	+	orf19.5768	849836	851007	1	849836	851007	849949	850959	SNF4	orf19.13191|IPF6988.2|IPF18292.1|IPF18293.1|Contig4-3026_0015|orf6.583|orf6.6189|orf6.6190|CA0122|CA6301|orf19.5769|SNF4.5f	Protein similar to S. cerevisiae Snf4p transcriptional regulator; caspofungin repressed; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	851374	853572	+	orf19.5770	851374	853572	1	851374	853572	851416	853572	OPT8	orf19.13192|IPF19226.2|IPF6990.2|Contig4-3026_0011|Contig4-3026_0013|orf6.582|orf6.6188|CA3821|CaO19.5770|IPF6990	Possible oligopeptide transporter; similar to Opt1p and to S. cerevisiae Ygl114wp, but not other OPTs; induced by nitric oxide, amphotericin B; expression of OPT6, -7, or -8 does not suppress defect of mutant lacking Opt1p, Opt2p, and Opt3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr6	853702	855529	-	orf19.5771	853702	855529	1	855529	853702	855456	853867	PBP2	orf19.13193|IPF21456.1|IPF6992.2|Contig4-3026_0010|orf6.6187|CA3820|CaO19.5771|CaO19.13193	Transcription is regulated by Nrg1p, Mig1p, and Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	855664	856940	-	orf19.5772	855664	856940	1	856940	855664	856798	855782		orf19.13194|IPF21469.1|IPF6993.1|Contig4-3026_0009|orf6.6186|CA3819|CaO19.13194|AOR1|CaO19.5772|IPF6993	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	857409	859891	+	orf19.5773	857409	859891	1	857409	859891	857571	859673		orf19.13195|IPF21448.1|IPF6995.2|Contig4-3026_0008|orf6.6185|CA3818|CaO19.5773|CaO19.13195|IPF6695	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-induced; clade-associated gene expression; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	863241	864779	-	orf19.5775	863241	864779	1	864779	863241	864779	863241		orf19.13197|IPF21457.1|IPF20146.1|Contig4-2914_0008|orf6.6183|CA3817|CaO19.5775|CaO19.13197|IFV7	Predicted ORF in Assemblies 19, 20 and 21; member of a family encoded by FGR6-related genes in the RB2 repeat sequence [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	870878	871278	+	ntar_1034	870878	871278	1	870878	871278	870878	871081			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	875330	875602	+	ntar_1035	875330	875602	1	875330	875602					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	876166	876517	-	ntar_1036	876166	876517	1	876517	876166	876517	876323			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	876329	877934	+	orf19.1221	876329	877934	1	876329	877934	876484	877821	ALG2	orf19.8808|IPF26120.1|IPF9503.2|Contig4-2488_0004|orf6.3077|CA1530|CaO19.8808|CaO19.1221|ALG2.5	Putative mannosyltransferase involved in cell wall mannan biosynthesis; transcription is elevated in chk1, nik1, and sln1 homozygous null mutants [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	877840	879446	-	orf19.1220	877840	879446	1	879446	877840	879364	878042	RVS167	orf19.8807|IPF26118.1|IPF9505.1|Contig4-2488_0001|orf6.3078|CA1531|CaO19.8807|CaO19.1220	Protein involved in endocytosis; contains a BAR domain; null mutant exhibits defects in hyphal growth, virulence, cell wall integrity, and actin patch localization; cosediments with phosphorylated Myo5p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	879750	881198	+	orf19.1219	879750	881198	1	879750	881198	879846	881048		IPF29539.1|orf6.671|CA6186|CaO19.1219|IPF9507.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	881355	884467	+	orf19.1217	881355	884467	1	881355	884467	881560	884196		orf19.8806|IPF9507.2|IPF16011.2|Contig4-2370_0009|orf6.669|orf6.3079|CA1532|CaO19.1217|IPF9507.3f|IPF9507	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	884297	885640	-	orf19.1215	884297	885640	1	885640	884297	885640	884297		orf19.8803|IPF9510.2|IPF29538.1|Contig4-2370_0003|Contig4-2370_0004|orf6.3082|CA1533|CaO19.8803|CaO19.1215|IPF9510	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	884819	885217	+	ntar_1037	884819	885217	1	884819	885217					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	885508	885737	+	ntar_1038	885508	885737	1	885508	885737					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	886631	888187	+	orf19.1214	886631	888187	1	886631	888187	886677	888020		orf19.8802|IPF26119.1|IPF9511.2|Contig4-2370_0007|orf6.3083|CA1534|MAP2|CaO19.8802|CaO19.1214	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	890075	891977	+	orf19.1212	890075	891977	2	890075|890573	890275|891977	890242	891648		orf19.8800|IPF9515.2|IPF16581.1|Contig4-2317_0008|orf6.3085|orf6.845|CA1535|IPF9515	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	892498	894404	+	orf19.1210	892498	894404	1	892498	894404	892798	894330		orf19.8799|IPF26117.1|IPF19126.1|orf6.843|CA0202|CaO19.1210|AVT5|CaO19.8799|IPF19126	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	892909	893178	-	ntar_1039	892909	893178	1	893178	892909					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	893752	893962	-	ntar_1040	893752	893962	1	893962	893752	893962	893792			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	894186	897962	-	orf19.4557	894186	897962	1	897962	894186	897768	894484		orf19.8798|IPF26122.1|IPF19127.1|IPF15446.2|orf6.842|orf6.3076|CA1529|orf19.1209|SPC105.5eoc|SPC105	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	898674	904979	-	orf19.4555	898674	904979	1	904979	898674	904976	898674	ALS4	IPF13009.2|IPF13010.2|IPF22626.1|IPF18130.1|ALS4.3f|Contig4-2046_0006|Contig4-2931_0006|orf6.3075|CA1527|CA1528|CA5173|orf19.4556|orf19.4610.1|ALS4.5f	ALS family protein; role in adhesion and wild-type germ tube induction; growth and temperature regulated; expressed during infection of human buccal epithelial cells; down-regulated upon vaginal contact; putative GPI-anchored [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr6	908141	910479	-	orf19.4553	908141	910479	1	910479	908141	910392	908224		IPF13815.2|Contig4-2587_0013|orf6.3072|CA1526|CaO19.4553|IPF13815	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	910829	911276	-	ntar_1041	910829	911276	1	911276	910829					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	911142	911295	+	ntar_1042	911142	911295	1	911142	911295					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	911948	912199	+	orf19.77.1	911948	912199	1	911948	912199	911948	912199		IPF27189.1|IPF29969.1	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	912607	912819	+	ntar_1043	912607	912819	1	912607	912819					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	913609	916361	-	orf19.76	913609	916361	1	916361	913609	916324	913787	SPB1	orf19.7727|IPF19691.1|IPF13820.3|Contig4-2587_0002|orf6.1369|orf6.267|CA0443|CaO19.76	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	916467	919609	-	orf19.74	916467	919609	1	919609	916467	919494	916615	SEC5	orf19.7725|orf19.7726|IPF17429.2|IPF19821.2|IPF27187.1|IPF16249.2|orf6.1371|orf6.80|orf6.1370|CA0445|CA0444|orf19.75|CaO19.74|CaO19.7725|IPF17429.5f	Predicted exocyst component; ortholog of <i>S. cerevisiae</i> Sec5p; merged with orf19.75 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	920270	923594	+	orf19.73	920270	923594	1	920270	923594	920465	923449		orf19.7724|IPF17657.3|IPF17430.1|orf6.22|orf6.1372|orf6.79|CA0011|orf19.62|CaO19.73|IPF17430.5eoc|IPF17430	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	923732	924998	-	orf19.1075	923732	924998	1	924998	923732	924998	923865		IPF18831.2|IPF19160.1|Contig4-1626_0009|orf6.735|CA0167|CaO19.1075|IPF19160	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr6	923850	924737	+	ntar_1044	923850	924737	1	923850	924737	924086	924217			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	926802	927073	+	ntar_1045	926802	927073	1	926802	927073					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	926947	927920	-	orf19.1075.1	926947	927920	1	927920	926947	927239	927111			Pseudogene; added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	928126	930738	-	orf19.1077	928126	930738	1	930738	928126	930521	928269	ATM1	orf19.8678|orf19.8676|orf6.2145|orf6.736|IPF14199.2|IPF19157.2|Contig4-2068_0003|orf6.2147|CA0933|CaO19.1077	Member of MDR subfamily of ABC family; similar to S. cerevisiae ABC transporter, Atm1p; transcriptionally regulated by iron; expression greater in low iron; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	931038	932559	-	orf19.1078	931038	932559	1	932559	931038	932489	931212	HBR2	orf19.8679|orf19.8680|IPF26229.1|IPF26228.1|IPF14203.2|IPF14202.2|Contig4-2068_0002|orf6.2148|orf6.2149|CA0934|CA0935|orf19.1079|IPF14203.3f	Uncharacterized protein, regulated by Gcn4p and hemoglobin; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	934133	935740	+	orf19.1080	934133	935740	1	934133	935740	934133	935740		orf19.8681|IPF26225.1|IPF16291.2|Contig4-1486_0005|orf6.2150|CA0936|IPF16291	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr6	934341	934769	-	ntar_1046	934341	934769	1	934769	934341	934769	934437			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	934803	935140	-	ntar_1047	934803	935140	1	935140	934803					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	936156	936932	+	orf19.1082	936156	936932	1	936156	936932	936223	936738		orf19.8683|orf6.1531|orf6.2152|CA0937|CaO19.1082|IPF19892|IPF19892.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	936556	936882	-	ntar_1048	936556	936882	1	936882	936556	936821	936648			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	937012	938127	+	orf19.1082.1	937012	938127	1	937012	938127	937165	937416		IPF16288.3|IPF16287.1|Contig4-2123_0001|CA0938|COX12|IPF16288.2	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	937700	938473	-	orf19.1083	937700	938473	1	938473	937700	938440	937757		orf19.8684|IPF26227.1|IPF14574.2|Contig4-2123_0002|orf6.1532|CA0541|CaO19.8684|CaO19.1083|IPF14574	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	938969	946262	+	orf19.1084	938969	946262	1	938969	946262	940096	946146	CDC39	orf19.8685|IPF19634.2|IPF19633.2|Contig4-2123_0005|orf6.1517|orf6.1533|CA0542|CaO19.1084|CA0530|IPF19633.3eoc|IPF19634.1	Protein similar to S. cerevisiae Cdc39p, which is part of the CCR4-NOT transcription regulatory complex; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	946606	947885	+	orf19.1085	946606	947885	1	946606	947885	946663	947361		orf19.8686|IPF10066.2|IPF17337.1|Contig4-2194_0002|Contig4-2887_0017|orf6.1226|orf6.1518|CA0531|UBC1|CaO19.1085	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	948102	950448	+	orf19.1086	948102	950448	1	948102	950448	948405	950273		orf19.8687|IPF19327.2|IPF10062.2|Contig4-2194_0004|orf6.1225|orf6.349|CA0372|BRE5|CaO19.1086|IPF10062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	950690	953206	+	orf19.1087	950690	953206	1	950690	953206	950706	953156		orf19.8688|IPF19579.1|IPF19578.1|orf6.1224|orf6.350|CA0371|CaO19.1087|IPF19578	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	953484	954703	+	orf19.1089	953484	954703	1	953484	954703	953697	954434	PEX11	orf19.8690|IPF19049.2|IPF29582.1|orf6.1103|orf6.1222|CA0310|CaO19.1089|IPF19049.1	Putative protein involved in fatty acid oxidation; expression is Tac1p-dependent [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	954533	955034	-	orf19.1090	954533	955034	1	955034	954533	954968	954621		orf19.8691|IPF26232.1|IPF16934.2|orf6.1102|CaO19.8691|CaO19.1090	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	955096	957398	+	orf19.1091	955096	957398	1	955096	957398	955195	957267		orf19.8692|IPF26223.1|IPF16935.2|orf6.1101|CA0309|CaO19.8692|NOP8|CaO19.1091|IPF16935	Putative ortholog of S. cerevisiae Nop8p, which is a nucleolar protein required for 60S ribosomal subunit biogenesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	957538	959407	+	orf19.1092	957538	959407	1	957538	959407	957611	959170		orf19.8693|IPF17442.2|IPF29580.1|orf6.1100|CA0308|RHK1|CaO19.1092	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	959308	963095	-	orf19.1093	959308	963095	1	963095	959308	962260	959807	FLO8	orf19.8695|IPF26221.1|IPF10214.2|orf6.3004|CA1476|CaO19.1093|IPF10214	Transcription factor; required for wild-type hyphal formation; regulates hyphal gene expression; required for virulence in mouse systemic infection; binds Efg1p; binds Mss11p via LisH motif; has LUFS domain; ortholog of S. cerevisiae Flo8p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	964403	965911	-	orf19.1095	964403	965911	1	965911	964403	965793	964642		orf19.8697|IPF26226.1|IPF10209.2|Contig4-2338_0010|orf6.3002|CA1475|CaO19.1095|GLE2|CaO19.8697	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	965993	968817	+	orf19.1096	965993	968817	1	965993	968817	966081	968720		orf19.8698|IPF26218.1|IPF10208.2|Contig4-2338_0007|orf6.3001|CA1474|CaO19.8698|GEF13|CaO19.1096|IPF10208	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	970509	970725	-	ntar_1049	970509	970725	1	970725	970509	970725	970597			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	970928	978542	+	orf19.1097	970928	978542	1	970928	978542	971454	978542	ALS2	orf19.8699|orf19.8700|orf19.9669|orf19.9670|orf6.1311|ALS4|IPF26222.1|IPF26230.1|IPF15450.3|IPF10205.2|IPF25194.1|IPF25217.1|IPF18994.1|IPF16055.3|orf6.3000|orf6.2999|CA1473|CA1471|CA0412|CA0413|orf19.1098|orf19.2121|orf19.2122|ALS12|ALS2.5f	ALS family protein; role in adhesion, biofilm formation, germ tube induction; expressed at infection of human buccal epithelial cells; putative GPI-anchor; induced by ketoconazole, low iron and at cell wall regeneration; regulated by Sfu1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr6	978569	979045	+	ntar_1050	978569	979045	1	978569	979045	978569	979045			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	983993	985862	-	orf19.2124	983993	985862	1	985862	983993	985627	984557		orf19.9672|IPF16259.1|IPF29191.1|IPF29204.1|Contig4-1838_0002|orf6.863|CA6197|IFR5.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	986080	986650	+	orf19.2125	986080	986650	1	986080	986650	986080	986535		IPF16257.1|IPF29197.1|Contig4-1838_0003|orf6.864|CaO19.2125	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	987862	989073	+	orf19.2127	987862	989073	1	987862	989073	987902	989053		orf19.9674|IPF25189.1|IPF16108.2|Contig4-1925_0003|orf6.5360|orf6.5361|orf19.2126|CaO19.2127	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr6	988823	991538	-	orf19.2129	988823	991538	1	991538	988823	991538	989037		orf19.9676|IPF25177.1|IPF19786.1|Contig4-1925_0002|Contig4-1925_0005|orf6.5363|SPO71|CaO19.9676|CaO19.2129	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr6	991540	992740	+	orf19.2128	991540	992740	1	991540	992740	991541	992731		orf19.9675|IPF25188.1|IPF12246.2|Contig4-2687_0001|orf6.5362|CA3179|CaO19.2128|CaO19.9675|YLF2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	992934	993048	+	tl(caa)3	992934	993048	2	992934|993005	992972|993048				tL(CAA)3.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	993052	995492	-	orf19.2131	993052	995492	1	995492	993052	995441	993111		orf19.9678|IPF25179.1|IPF12244.2|Contig4-2687_0002|orf6.5365|CA3180|CaO19.9678|CaO19.2131|IPF12244	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	995517	996289	-	orf19.2132	995517	996289	1	996289	995517	996225	995524		orf19.9679|IPF25191.1|IPF12241.1|Contig4-2687_0003|orf6.5366|CA3181|CaO19.9679|CaO19.2132|IPF12241	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	997381	1003738	-	orf19.2135	997381	1003738	1	1003738	997381	1003738	999461	TSM1	orf19.9682|orf19.9683|IPF25185.1|IPF25176.1|IPF13636.2|IPF15656.2|orf6.287|orf6.5369|orf6.5370|CA3183|CA3184|orf19.2136|TSM1.3f	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; transcription is regulated by Nrg1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	998012	999391	+	orf19.2133	998012	999391	1	998012	999391	998012	999391	LIP4	orf19.9680|IPF19830.2|IPF15657.2|Contig4-2687_0005|orf6.288|orf6.5367|CA3182|CaO19.2133	Secreted lipase, member of a differentially expressed lipase gene family with possible roles in nutrition and/or in creating an acidic microenvironment; expressed more strongly during mucosal infections than during systemic infections [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr6	1003757	1005342	-	orf19.2137	1003757	1005342	1	1005342	1003757	1005292	1003841		orf19.9684|IPF25186.1|IPF13637.2|Contig4-2481_0005|orf6.5371|CA3185|CaO19.9684|CaO19.2137|IPF13637	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	1005432	1008759	+	orf19.2138	1005432	1008759	1	1005432	1008759	1005464	1008730	ILS1	orf19.9685|IPF25214.1|IPF13644.2|Contig4-2481_0004|orf6.5372|CA3186|CaO19.2138|CaO19.9685	Protein similar to isoleucyl-tRNA synthetase, the target of drugs including the cyclic beta-amino acid icofungipen/PLD-118/BAY-10-8888 and mupirocin; detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	1008616	1011589	-	orf19.2143	1008616	1011589	1	1011589	1008616	1011582	1008739		orf19.9690|IPF25218.1|IPF17094.2|Contig4-2481_0003|orf6.5377|CA3187|CaO19.9690|CaO19.2143|IPF17094	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	1011720	1011955	+	ntar_1051	1011720	1011955	1	1011720	1011955					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr6	1012058	1013425	-	orf19.2146	1012058	1013425	1	1013425	1012058	1013409	1012261		orf19.9693|IPF25187.1|IPF11610.2|Contig4-2303_0002|orf6.5380|CA3188|HAT2|CaO19.2146|IPF11610	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	1013470	1015794	-	orf19.2149	1013470	1015794	1	1015794	1013470	1015748	1013475		orf19.9696|IPF25180.1|IPF11607.2|Contig4-2303_0004|orf6.5383|CA3189|CaO19.9696|CaO19.2149|IPF11607	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	1015894	1016950	+	orf19.2150	1015894	1016950	1	1015894	1016950	1015905	1016894		orf19.9697|IPF25190.1|IPF11603.2|Contig4-2063_0006|Contig4-2303_0006|orf6.5384|CA3190|CaO19.9697|CaO19.2150|IPF11603	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	1016974	1019424	+	orf19.2151	1016974	1019424	1	1016974	1019424	1016993	1019365	NAG6	orf19.9698|IPF25181.1|IPF11601.2|Contig4-2063_0005|orf6.5385|SEY1|CA3191|CaO19.2151|CaO19.9698|IPF11601	Protein required for wild-type mouse virulence and wild-type cycloheximide resistance; putative GTP-binding motif; similar to S. cerevisiae Yor165Wp; in gene cluster that encodes enzymes of GlcNAc catabolism; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	1019506	1021076	+	orf19.2154	1019506	1021076	1	1019506	1021076	1019511	1020992	HXK1	orf19.9701|NAG5|IPF2721.2|IPF11598.2|Contig4-2021_0003|Contig4-2063_0001|Contig4-2063_0004|orf6.2468|orf6.5388|CA3192|CaO19.2154|IPF11598	N-acetylglucosamine (GlcNAc) kinase; involved in GlcNAc utilization; required for wild-type hyphal growth and mouse virulence; gene expression is GlcNAc-induced; induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr6	1021185	1022030	-	orf19.2156	1021185	1022030	1	1022030	1021185	1021981	1021235	NAG1	orf19.9703|IPF2719.1|IPF29192.1|Contig4-2021_0001|orf6.5390|orf6.2470|CA1130|CaO19.2156	Glucosamine-6-phosphate deaminase; enzyme of N-acetylglucosamine utilization; required for wild-type hyphal growth and mouse virulence; converts glucosamine 6-P to fructose 6-P; reaction is reversible in vitro; gene is GlcNAc-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	1022157	1023509	+	orf19.2157	1022157	1023509	1	1022157	1023509	1022223	1023464	DAC1	orf19.9704|NAG2|IPF20073.1|IPF20045.2|Contig4-2021_0002|orf6.2471|orf6.684|CA1131|CaO19.2157	N-acetylglucosamine-6-phosphate (GlcNAcP) deacetylase; enzyme of N-acetylglucosamine utilization; required for wild-type hyphal growth and virulence in mouse systemic infection; gene is GlcNAc-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	1023375	1025223	-	orf19.2158	1023375	1025223	1	1025223	1023375	1025158	1023473	NAG3	orf6.683|MDR97|orf6.682|TMP1|IPF2706.2|IPF2714.2|Contig4-2515_0003|orf6.2472|CA6268|CA1132|orf19.2159|IFY2.3f	Putative transporter of the major facilitator superfamily (MFS); similar to Nag4p; required for wild-type mouse virulence and cycloheximide resistance; in gene cluster that includes genes encoding enzymes of GlcNAc catabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr6	1025368	1027113	-	orf19.2160	1025368	1027113	1	1027113	1025368	1027113	1025368	NAG4	orf19.9706|TMP2|IPF2710.1|IPF2708.3|Contig4-2515_0002|orf6.2473|orf6.681|CA1133|GAN4|CaO19.2160|IFY1|IPF2710.repeat1	Putative transporter; fungal-specific; similar to Nag3p and to S. cerevisiae Ypr156Cp and Ygr138Cp; required for wild-type mouse virulence and wild-type cycloheximide resistance; gene cluster encodes enzymes of GlcNAc catabolism [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr6	1028782	1031331	+	orf19.2163	1028782	1031331	1	1028782	1031331	1028818	1031331		orf19.9709|IPF25178.1|IPF2702.1|orf6.2476|CA1134|CaO19.2163|CaO19.9709|IPF2702	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr7	50	1159	-	orf19.7125	50	1159	1	1159	50	1155	97		IPF5661.2|Contig4-2995_0002|orf6.8428|CA5579|CaJ7.0001|CaO19.7125|CaO19_7125|CaJ7_0001|IPF5661|IPF5661.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	1189	2050	-	orf19.7124	1189	2050	1	2050	1189	2040	1246	RVS161	IPF5657.1|Contig4-2995_0004|orf6.8429|CA5580|CaJ7.0003|CaO19.7124	Protein required for endocytosis; contains a BAR domain, which is found in proteins involved in membrane curvature; null mutant exhibits defects in hyphal growth, virulence, cell wall integrity, and actin patch localization [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	2124	2921	+	orf19.7123	2124	2921	1	2124	2921	2278	2769		IPF5653.1|Contig4-2995_0005|orf6.8430|CaJ7.0004|CaO19.7123|CaO19_7123|CaJ7_0004	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	2398	3428	-	orf19.7121	2398	3428	1	3428	2398	3421	2747		IPF5652.1|Contig4-2995_0006|orf6.8432|CaJ7.0005|CaO19.7121|CaO19_7121|CaJ7_0005	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	3453	5761	-	orf19.7119	3453	5761	1	5761	3453	5761	3464		IPF5649.1|Contig4-2995_0008|orf6.8434|CA5581|CaJ7.0007|RAD3|CaO19.7119|CaJ7_0007|CaO19_7119	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	5799	6467	-	orf19.7118	5799	6467	1	6467	5799	6467	5799		IPF5646.1|Contig4-2995_0009|orf6.8435|CA5582|CaJ7.0009|CaO19_7118|CaJ7_0009|CaO19.7118|ADK2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	6523	7476	-	orf19.7116	6523	7476	1	7476	6523	7476	6523		IPF5644.1|Contig4-2995_0012|orf6.8437|CA5583|CaJ7.0011|CaO19.7116|CaO19_7116|CaJ7_0011|IPF5644	Putative protein of unknown function, transcription is upregulated in an RHE model of oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	7548	9430	-	orf19.7115	7548	9430	1	9430	7548	9430	7583	SAC7	IPF5642.1|Contig4-2995_0014|orf6.8438|CA5584|CaJ7.0013|CaO19.7115	Protein described as a GTPase activating protein (GAP) for RHO1; downregulated upon adherence to polystyrene; macrophage/pseudohyphal-repressed; transcription is upregulated in RHE model of oral candidiasis and in clinical oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	9933	13341	-	orf19.7114	9933	13341	1	13341	9933	13080	10024	CSA1	orf6.8439|WAP1|IPF5641.1|Contig4-2995_0015|CA5585|CaJ7.0015|CaO19_7114|CaJ7_0015|CaO19.7114	Surface antigen on elongating hyphae and buds; no obvious hyphal defects in mutant; strain variation in number of repeat domains; upregulated in filaments; alkaline upregulated by Rim101p; ciclopirox induced; Efg1p- and Cph1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	14047	15866	+	orf19.7112	14047	15866	1	14047	15866	14047	15825	FRP2	IPF5625.1|Contig4-2995_0020|orf6.8441|CA5586|CaJ7.0017|CaO19.7112|CaO19_7112|CaJ7_0017|IPF5625	Protein described as ferric reductase; alkaline upregulated by Rim101p; fluconazole-downregulated; upregulated in the presence of human neutrophils; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	15973	16662	+	orf19.7111.1	15973	16662	2	15973|16147	16086|16662	15982	16662	SOD3	SOD21|IPF5623.1|IPF5622.1|Contig4-2995_0021|CA5587|CaJ7.0018|SOD22|orf19.7111.2|CaJ7_0018|CA5588|SOD22.3f	Cytosolic manganese-containing superoxide dismutase, involved in protection against oxidative stress; transcription downregulated by treatment with ciclopirox olamine, induced during stationary phase when SOD1 expression is repressed [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	16071	16467	-	ntar_1052	16071	16467	1	16467	16071					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	16744	17208	+	orf19.7111	16744	17208	1	16744	17208	16744	17208		IPF5621.1|Contig4-2995_0022|orf6.8442|CA5589|CaJ7.0019|CaO19.7111|FIS1|CaJ7_0019|CaO19_7111|IPF5621	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	17244	18340	+	orf19.7110	17244	18340	1	17244	18340	17255	18298		IPF5619.1|Contig4-2995_0023|orf6.8443|CA5590|CaJ7.0020|CaO19_7110|CaJ7_0020|CaO19.7110|TAD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	18163	18970	-	orf19.7109	18163	18970	1	18970	18163	18851	18321		IPF5618.1|Contig4-2995_0024|orf6.8444|CA5591|CaJ7.0021|CaO19.7109|CaJ7_0021|CaO19_7109|IPF5618	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	19067	19988	+	orf19.7108	19067	19988	1	19067	19988	19179	19871		IPF5616.1|Contig4-2995_0027|orf6.8445|CA5592|CaJ7.0022|CaO19.7108|RPE1|CaJ7_0022|CaO19_7108	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	19877	20366	-	orf19.7107	19877	20366	1	20366	19877	20349	19888		IPF5615.1|Contig4-2995_0028|orf6.8446|CA5593|CaJ7.0023|CaO19_7107|CaJ7_0023|CaO19.7107|IPF5615	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	21062	23531	+	orf19.7106	21062	23531	1	21062	23531	21072	23375		IPF19814.1|Contig4-3106_0075|orf6.8447|CA5594|CaJ7.0024|CaO19.7106|CaO19_7106|CaJ7_0024|IPF19814	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	23536	25876	+	orf19.7105	23536	25876	1	23536	25876	23536	25842	FAR1	IPF568.2|Contig4-3106_0001|Contig4-3106_0003|orf6.8448|CA5595|CaJ7.0025|CaO19_7105|CaJ7_0025|CaO19.7105|IPF568	Protein involved in regulation of pheromone-mediated mating; repressed by A1p and Alpha2p in white-phase cells; null mutant shows no pheromone response in opaque cells; overexpression causes enhanced pheromone response and cell cycle arrest [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	25560	25876	-	ntar_1053	25560	25876	1	25876	25560	25876	25661			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	25936	27089	+	orf19.7104	25936	27089	1	25936	27089	26062	27036		IPF564.2|Contig4-3106_0005|orf6.8449|CA5596|CaJ7.0026|CaO19.7104|CaO19_7104|CaJ7_0026|IPF564	Predicted ORF in Assemblies 19, 20 and 21; similar to mucins and to a Litomosoides microfilarial sheath protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	27104	28348	+	orf19.7103	27104	28348	1	27104	28348	27138	28232		IPF563.1|Contig4-3106_0006|orf6.8450|CA5597|CaJ7.0027|CaO19_7103|CaJ7_0027|CaO19.7103|IPF563	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	28096	30600	-	orf19.7101	28096	30600	1	30600	28096	30591	28225		IPF562.1|Contig4-3106_0008|orf6.8452|CA5598|CaJ7.0029|CaO19_7102|CaJ7_0028|CaO19.7101|TEL2|IPF562	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	30551	31618	+	orf19.7102	30551	31618	1	30551	31618	30551	31618		IPF560.1|Contig4-3106_0009|orf6.8451|CA5599|CaJ7.0028|CaO19.7102|IPF560	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	31779	33545	+	orf19.7100	31779	33545	1	31779	33545	31779	33545		IPF559.1|Contig4-3106_0010|Contig4-3106_0011|orf6.8453|CA5600|CaJ7.0030|AVT11|CaO19.7100|CaO19_7100|CaJ7_0030|IPF559	Predicted ORF in Assemblies 19, 20 and 21; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	33631	34149	-	ntar_1054	33631	34149	1	34149	33631	34122	33922			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	33810	34524	+	orf19.7098	33810	34524	1	33810	34524	33810	34454		IPF556.1|Contig4-3106_0013|orf6.8455|CA5601|CaJ7.0032|CaO19.7098|CaJ7_0032|CaO19_7098|IPF556	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	34254	35230	-	orf19.7097	34254	35230	1	35230	34254	35195	34632		IPF554.1|Contig4-3106_0014|orf6.8456|CA5602|CaJ7.0033|CaO19_7097|CaJ7_0033|CaO19.7097|SGN12|IPF554	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	35315	38330	-	orf19.7096	35315	38330	1	38330	35315	38295	35365		IPF553.1|Contig4-3106_0015|orf6.8457|CA5603|CaJ7.0034|CaO19_7096|CaJ7_0034|CaO19.7096|IPF553	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	38480	40137	+	orf19.7095	38480	40137	1	38480	40137	38507	39679		IPF549.1|Contig4-3106_0019|orf6.8458|CA5604|CaJ7.0035|CaO19_7095|CaJ7_0035|CaO19.7095|IPF549	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	41503	43167	+	orf19.7094	41503	43167	1	41503	43167	41587	43167	HGT12	RGT2|IPF546.1|GS|CG13|Contig4-3106_0021|orf6.8459|CA5605|CaJ7.0036|SNF32|CaO19.7094|CaO19_7094|CaJ7_0036|SNF31	Glucose, fructose, mannose transporter; major facilitator superfamily; role in macrophage-induced hyphal growth; detected at germ tube plasma membrane by mass spectrometry; Snf3p-induced; 12 probable transmembrane segments [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr7	43379	45240	-	orf19.7093	43379	45240	2	45240|43651	43717|43379	45102	43379	HGT13	STL1|IPF541.2|IPF542.2|Contig4-3106_0022|Contig4-3106_0023|orf6.8460|STL2|CA5606|CaJ7.0038|orf19.7093.2|CaO19_7093|CaJ7_0038|CA5607|STL2.5f|STL2.3f	Predicted sugar transporter, involved in glycerol utilization; member of the major facilitator superfamily; 12 transmembrane; gene has intron; oxidative stress-induced via Cap1p; expressed in rich medium, 2% glucose [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=H scenario_last_exon=C]
Ca21chr7	46290	47270	+	orf19.7092	46290	47270	1	46290	47270	46309	47109		IPF539.1|Contig4-3106_0025|orf6.8461|CA5608|CaJ7.0039|CaO19_7092|CaJ7_0039|CaO19.7092|IPF539	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	47106	48074	-	orf19.7091	47106	48074	1	48074	47106	47988	47152		IPF538.1|Contig4-3106_0026|orf6.8462|CA5609|CaJ7.0041|CaO19.7091|CaJ7_0041|CaO19_7091|IPF538	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	48271	51267	-	orf19.7089	48271	51267	1	51267	48271	51214	48461	PMR1	IPF534.2|Contig4-3106_0029|Contig4-3106_0030|orf6.8464|CA5610|CaJ7.0043|CaO19_7089|CaJ7_0043|CaO19.7089	Putative secretory pathway P-type Ca2+/Mn2+-ATPase; required for protein glycosylation and cell wall maintenance; required for hyphal tip oscillation in semisolid substrate; putative ortholog of S. cerevisiae PMR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	51533	52864	-	orf19.7088	51533	52864	1	52864	51533	52855	51707		IPF529.1|Contig4-3106_0032|orf6.8465|CA5611|CaJ7.0044|CaO19.7088|SUA5|CaJ7_0044|CaO19_7088	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	52894	55888	-	orf19.7086	52894	55888	1	55888	52894	55866	52951		IPF527.1|Contig4-3106_0034|orf6.8467|CA5612|CaJ7.0045|KAP114|CaO19.7086|CaJ7_0045|CaO19_7086	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	56026	57417	-	orf19.7085	56026	57417	1	57417	56026	57377	56058		IPF525.1|Contig4-3106_0036|orf6.8468|CA5613|CaJ7.0047|CaO19.7085|CaJ7_0047|CaO19_7085|IPF525	Predicted ORF in Assemblies 19, 20 and 21; induced in core stress response; induced by heavy metal (cadmium) stress via Hog1p; oxidative stress-induced via Cap1p; induced by Mnl1p under weak acid stress; macrophage-downregulated  [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	58868	60202	+	orf19.7084	58868	60202	1	58868	60202	59071	60084		DFI1|IPF522.1|Contig4-3106_0042|orf6.8469|CA5614|CaJ7.0048|CaO19.7084|CaJ7_0048|CaO19_7084|IPF522	 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	60278	61357	+	orf19.7083	60278	61357	1	60278	61357	60279	61298	DCC1	IPF520.1|Contig4-3106_0044|orf6.8470|CA5615|CaJ7.0049|CaO19_7083|CaJ7_0049|CaO19.7083|IPF520	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	61416	62319	+	orf19.7082	61416	62319	1	61416	62319	61437	62255		IPF519.1|Contig4-3106_0045|orf6.8471|CA5616|CaJ7.0050|CaO19_7082|CaJ7_0050|CaO19.7082|PET8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	62460	64022	+	orf19.7081	62460	64022	1	62460	64022	62478	63944	SPL1	orf6.8472|NFS1|IPF518.1|Contig4-3106_0046|CA5617|CaJ7.0052|CaO19_7081|CaJ7_0052|CaO19.7081	Protein similar to S. cerevisiae Spl1p, which is involved in tRNA splicing; member of pyridoxal-phosphate-dependent aminotransferase protein family; predicted to be essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	64158	65279	+	orf19.7080	64158	65279	1	64158	65279	64158	65279	LEU2	IPF516.1|Contig4-3106_0047|orf6.8473|CA5618|CaJ7.0053|CaJ7_0053|CaO19_7080|CaO19.7080	Isopropyl malate dehydrogenase; enzyme of leucine biosynthesis; upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; protein level decreased in stationary phase cultures [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr7	65280	68766	-	orf19.7079	65280	68766	1	68766	65280	68746	65303		IPF514.1|Contig4-3106_0049|orf6.8474|CA5619|CaJ7.0054|BUD3|CaO19.7079|CaJ7_0054|CaO19_7079|IPF514	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	68937	69570	-	orf19.7078	68937	69570	1	69570	68937	69539	69078		IPF511.1|Contig4-3106_0051|orf6.8475|CA5620|CaJ7.0055|CaO19.7078|CaJ7_0055|CaO19_7078|IPF511	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	69196	69388	+	ntar_1055	69196	69388	1	69196	69388	69196	69339			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	70546	72453	+	orf19.7077	70546	72453	1	70546	72453	70601	72361		orf6.8476|IPF507.2|FRE7|Contig4-3106_0052|Contig4-3106_0053|CA5621|CaJ7.0056|CaO19.7077|CaO19_7077|CaJ7_0056	Protein with similarity to ferric reductases; transcription is activated by Mac1p under copper starvation; Plc1p-regulated; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	72345	74467	-	orf19.7076	72345	74467	2	74467|73935	74300|72345	74332	72658		IPF506.1|Contig4-3106_0055|orf6.8477|CA5622|CaJ7.0058|GBP2.3f|GBP2.3	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	74638	75480	-	orf19.7074	74638	75480	1	75480	74638	75454	74657		IPF502.1|Contig4-3106_0058|orf6.8479|CA5623|CaJ7.0059|CaO19_7074|CaJ7_0059|CaO19.7074|IPF502	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	75345	76342	+	orf19.7073	75345	76342	1	75345	76342	75620	76342		IPF501.1|Contig4-3106_0061|orf6.8480|CA5624|CaJ7.0060|CaO19_7073|CaJ7_0060|CaO19.7073|IPF501	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr7	76252	77996	-	orf19.7072	76252	77996	1	77996	76252	77930	76425	PEL1	IPF499.1|Contig4-3106_0062|orf6.8481|CA5625|CaJ7.0061|CaJ7_0061|CaO19_7072|PGS1|CaO19.7072	Predicted enzyme of mitochondrial phospholipid biosynthesis; upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	79434	81007	+	orf19.7071	79434	81007	1	79434	81007	79446	80990	FGR2	PHO84|IPF498.1|Contig4-3106_0064|orf6.8482|CA5626|CaJ7.0062|CaO19.7071|CaO19_7071|CaJ7_0062|IPF498	Protein similar to phosphate transporters; transposon mutation affects filamentous growth; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	81011	82115	-	orf19.7069	81011	82115	1	82115	81011	81905	81174		IPF495.1|Contig4-3106_0065|orf6.8484|CA5627|CaJ7.0064|CaO19_7069|CaJ7_0064|CaO19.7069|IPF495	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	81346	81816	+	orf19.7070	81346	81816	1	81346	81816	81346	81816		IPF496.1|orf6.8483	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	82504	83951	+	orf19.7068	82504	83951	1	82504	83951	82584	83879	MAC1	IPF492.1|Contig4-3106_0066|orf6.8485|CA5628|CaJ7.0065|CaJ7_0065|CaO19_7068|CaO19.7068	Transcriptional regulator of CTR1, which encodes a copper transporter; activates CTR1 transcription under low-copper conditions; ectopic expression causes copper-sensitive stimulation of filamentation in S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	84133	87648	+	orf19.7067	84133	87648	1	84133	87648	84177	87452		IPF489.1|Contig4-3106_0067|orf6.8486|CA5629|CaJ7.0066|CaO19_7067|CaJ7_0066|CTR9|CaO19.7067	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	87554	88156	-	orf19.7065	87554	88156	1	88156	87554	88111	87578	PSF3	IPF486.2|Contig4-3106_0069|orf6.8488|CA5630|CaJ7.0068|CaO19_7065|CaJ7_0068|CaO19.7065|IPF486	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	88559	91108	-	orf19.7064	88559	91108	1	91108	88559	91080	88681	GLN4	IPF485.2|Contig4-3106_0070|Contig4-3106_0071|GLN4A|orf6.8489|CA5631|CaJ7.0069|CaO19.7064|CaO19_7064|CaJ7_0069	Putative tRNA-Gln synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	91292	92165	-	orf19.7063	91292	92165	1	92165	91292	92165	91359		IPF480.2|Contig4-3106_0072|orf6.8490|CA5632|CaJ7.0070|CaJ7_0070|CaO19_7063|CaO19.7063|THG1|IPF480	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	92353	95994	+	orf19.7062	92353	95994	1	92353	95994	92423	95923	RPA135	IPF479.1|Contig4-3106_0073|orf6.8491|CA5633|CaJ7.0071|CaO19.7062|CaJ7_0071|CaO19_7062	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	95931	96742	-	orf19.7061	95931	96742	1	96742	95931	96723	96043		IPF477.1|orf6.8492|CA5634|CaJ7.0072|CaO19_7061|CaJ7_0072|CaO19.7061|IPF477	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	96244	98019	+	orf19.7060	96244	98019	1	96244	98019	96928	97902		IPF474.1|Contig4-2959_0002|orf6.8493|CA5635|CaJ7.0073|CaO19.7060|CaO19_7060|CaJ7_0073|IPF474	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	97873	99315	-	orf19.7059	97873	99315	1	99315	97873	99298	97943		IPF473.1|Contig4-2959_0003|orf6.8494|CA5636|CaJ7.0074|CaO19.7059|CaJ7_0074|CaO19_7059|IPF473	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	99537	101387	-	orf19.7058	99537	101387	1	101387	99537	101327	99537		IPF472.1|Contig4-2959_0004|orf6.8495|CA5637|CaJ7.0075|CaO19.7058|CaO19_7058|CaJ7_0075|IPF472	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	101568	103930	+	orf19.7057	101568	103930	1	101568	103930	101629	103806		IPF470.1|Contig4-2959_0005|orf6.8496|CA5638|CaJ7.0076|CaO19_7057|CaJ7_0076|CaO19.7057|IPF470	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	103919	105906	-	orf19.7056	103919	105906	2	105906|105411	105602|103919	105816	103977		IPF468.1|IPF469.1|Contig4-2959_0006|orf6.8497|CaJ7.0077|orf19.7055.1|DIP53|CaO19_7056|CaJ7_0077|CA5640|CA5639|DIP53.exon2	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=I]
Ca21chr7	106320	106646	-	orf19.7055	106320	106646	1	106646	106320	106646	106320			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	110736	111606	-	ntar_1413	110736	111606	2	111606|111447	111537|110736					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	114110	114475	+	orf19.7054	114110	114475	1	114110	114475	114110	114475		IPF27595.1|orf6.8499|CaJ7.0079|CaO19_7054|CaJ7_0079|CaO19.7054	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	115344	118048	+	orf19.7053	115344	118048	1	115344	118048	115894	117909	GAC1	IPF461.2|orf6.8500|CA5641|CaJ7.0080|CaO19.7053|CaO19_7053|CaJ7_0080	Protein described as similar to regulatory subunit of serine/threonine phosphoprotein phosphatase 1; fluconazole-induced; caspofungin repressed; transcriptionally activated by Mnl1p under weak acid stress; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	118938	119800	+	ntar_1056	118938	119800	1	118938	119800					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	121266	121776	+	ntar_1057	121266	121776	1	121266	121776	121419	121544			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	121720	122036	-	ntar_1058	121720	122036	1	122036	121720					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	122253	122722	+	ntar_1059	122253	122722	1	122253	122722	122503	122655			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	122788	126343	-	orf19.7052	122788	126343	1	126343	122788	126245	122844		IPF451.1|Contig4-2871_0003|orf6.8501|CA5642|CaJ7.0081|CaO19.7052|INP52|CaO19_7052|CaJ7_0081	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	126488	127257	+	orf19.7051	126488	127257	1	126488	127257	126561	127202		IPF448.1|Contig4-2871_0005|orf6.8502|CA5643|CaJ7.0082|CaO19_7051|CaJ7_0082|CaO19.7051|IPF448	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	127339	128230	+	orf19.7050	127339	128230	1	127339	128230	127379	128182	NOP15	IPF447.1|Contig4-2838_0006|Contig4-2871_0006|orf6.8503|CA5644|CaJ7.0083|CaO19.7050|CaJ7_0083|CaO19_7050|IPF447	Protein described as a nucleolar ribosome biogenesis factor; hyphal-induced expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	128816	129003	-	ntar_1060	128816	129003	1	129003	128816	128977	128825			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	128981	130056	+	orf19.7049	128981	130056	1	128981	130056	129228	129608	CYB5	CYTB5|orf6.8505|orf6.8504|IPF443.1|Contig4-2871_0008|CA5645|CaJ7.0084|CaO19.7049|CaJ7_0084	Cytochrome b(5); not essential for viability; similar to S. cerevisiae Cyb5p; transcriptionally regulated by iron; expression greater in high iron; fluconazole-induced; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	131156	131385	+	ntar_1061	131156	131385	1	131156	131385	131156	131296			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	131513	132202	+	orf19.7048.1	131513	132202	2	131513|131660	131587|132202	131585	131860	RPS28B	IPF440.1|CA5646|RPS28B.3f|RPS28B.3	Putative ribosomal protein S28B; ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	132399	134460	+	orf19.7047	132399	134460	1	132399	134460	132567	134273	RTF1	orf6.8505|IPF3088.3|Contig4-2855_0020|orf6.7973|CA5228|CaJ7.0085|orf19.7048|RTF1.3f|RTF1.3eoc|IPF3088.2	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	135413	136630	+	orf19.7046	135413	136630	1	135413	136630	135510	136031	MET28	IPF3087.1|Contig4-2855_0006|orf6.7972|CA5227|CaJ7.0086|CaJ7_0086|CaO19_7046|CaO19.7046|IPF3087	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	137132	143119	+	orf19.7044	137132	143119	1	137132	143119	137282	143053		IPF3086.1|Contig4-2855_0009|orf6.7970|CA5226|CaJ7.0087|RIM15|CaO19.7044|CaO19_7044|CaJ7_0087	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	143330	144026	+	orf19.7043.1	143330	144026	2	143330|143679	143555|144026	143529	143912	ACB1	IPF3082.1|CA5225|ACB1.3f|ACB1.exon2	Protein described as similar to a region of acyl-coenzyme-A-binding protein; amphotericin B repressed; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	143480	144850	-	orf19.7043	143480	144850	1	144850	143480	144569	144060		IPF3081.1|Contig4-2855_0014|orf6.7969|CA5224|CaJ7.0089|CaO19_7043|CaJ7_0089|CaO19.7043|IPF3081	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	145784	147120	+	orf19.7042	145784	147120	1	145784	147120	145917	146819		IPF3080.2|IPF3080|Contig4-2855_0017|orf6.7968|CA5223|CaJ7.0090|CaO19_7042|CaJ7_0090|CaO19.7042	Increased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	147365	148008	-	ntar_1062	147365	148008	1	148008	147365	148008	147790			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	148118	150555	+	orf19.7041	148118	150555	1	148118	150555	148191	150485		IPF3079.2|Contig4-1858_0007|orf6.7967|CA5222|CaJ7.0091|CaO19.7041|PTA1|CaJ7_0091|CaO19_7041|IPF3079	Putative protein of unknown function; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	150729	153349	+	orf19.7038	150729	153349	3	150729|152047|152204	151973|152117|153349	150850	153243		IPF3075.1|IPF3076.1|Contig4-1858_0003|orf6.7964|orf6.7965|CA5220|CaJ7.0093|orf19.7039|MVP1|CA5221|MVP1.exon1|MVP1.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	153119	154027	-	orf19.7037	153119	154027	1	154027	153119	153889	153347	YAE1	IPF3074.1|Contig4-1989_0001|orf6.7963|CA5219|CaJ7.0095|CaO19_7037|CaJ7_0095|CaO19.7037	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	153514	154013	+	ntar_1063	153514	154013	1	153514	154013	153753	153881			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	154188	155954	+	orf19.7036	154188	155954	1	154188	155954	154466	155746		IPF3073.1|Contig4-1989_0003|orf6.7962|CA5218|CaJ7.0096|CaO19.7036|WHI2|CaO19_7036|CaJ7_0096	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	155836	156039	-	ntar_1064	155836	156039	1	156039	155836					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	156114	157329	+	orf19.7035	156114	157329	1	156114	157329	156150	157241	RFC2	IPF3070.2|Contig4-2889_0019|orf6.7961|CA5217|CaJ7.0097|CaO19.7035|CaJ7_0097|CaO19_7035	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	157349	159972	-	orf19.7034	157349	159972	1	159972	157349	159808	157502		IPF3069.2|Contig4-2889_0017|orf6.7960|CA5216|CaJ7.0098|CaO19.7034|CaO19_7034|CaJ7_0098|IPF3069	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	160489	164200	-	orf19.7033	160489	164200	1	164200	160489	163943	160710		IPF3063.1|Contig4-2889_0013|orf6.7959|CA5215|CaJ7.0099|CaO19_7033|CaJ7_0099|CaO19.7033|PPS1	Putative dual specificity protein phosphatase, similar to S. cerevisiae Pps1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	164374	164624	-	ntar_1065	164374	164624	1	164624	164374					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	165543	168940	+	orf19.7032	165543	168940	1	165543	168940	165660	168671		IPF19807.1|Contig4-2889_0009|Contig4-2889_0010|orf6.7958|CA5214|CaJ7.0100|CaO19.7032|CaO19_7032|CaJ7_0100|IPF19807	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	168882	169463	-	ntar_1066	168882	169463	1	169463	168882	169463	169287			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	171583	172766	+	orf19.7030	171583	172766	1	171583	172766	171720	172424	SSR1	IPF3054.1|Contig4-2889_0002|orf6.7956|CA5213|CaJ7.0101|CaO19_7030|CaJ7_0101|CCW14|CaO19.7030	Beta-glucan associated cell-wall protein with role in cell wall structure; S/T rich protein, GPI anchor; similar mRNA abundance in yeast-form and germ tube; detected at germ tube plasma membrane by mass spec; similar to S. cerevisiae Ssr1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	174289	176121	+	orf19.7029	174289	176121	1	174289	176121	174289	176121		IPF3050.2|Contig4-2889_0001|orf6.7955|CA5212|CaJ7.0103|CaJ7_0103|CaO19_7029|CaO19.7029|IPF3050	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	176543	179318	-	orf19.7027	176543	179318	1	179318	176543	179318	176562		IPF2373.2|IPF18125.1|orf6.7953|orf6.7954|CA5210|CA5211|CaJ7.0104|CaJ7.0105|orf19.7028|IPF2373	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.7028 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	181125	181362	+	ntar_1067	181125	181362	1	181125	181362					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	183263	183626	-	ntar_1068	183263	183626	1	183626	183263	183531	183352			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	184877	185312	-	ntar_1069	184877	185312	1	185312	184877					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	185787	186357	-	ntar_1070	185787	186357	1	186357	185787	186214	186089			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	187640	189480	-	orf19.7025	187640	189480	2	189480|188837	189120|187640	188811	188023	MCM1	IPF2363.1|Contig4-3091_0013|Contig4-3091_0014|orf6.7951|CA5209|CaJ7.0107|CaO19.7025|CaO19_7025|CaJ7_0107	Transcription factor; regulator of hyphal growth; may act with Wor1p; canonical and non-canonical binding sites; MADS domain DNA-binding motif; similar to S. cerevisiae Mcm1p; greater expression in white than opaque cells; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	189687	189995	+	orf19.7024	189687	189995	1	189687	189995	189687	189995		IPF27598.1|orf6.7950|CaJ7.0108|CaO19.7024|CaO19_7024|CaJ7_0108	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	189935	191278	-	orf19.7023	189935	191278	1	191278	189935	191255	190074		IPF2361.1|Contig4-3091_0017|orf6.7949|CA5208|CaJ7.0109|CaO19.7023|IOC4|CaJ7_0109|CaO19_7023|IPF2361	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	190762	190914	+	ntar_1071	190762	190914	1	190762	190914					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	191322	192530	-	orf19.7022	191322	192530	1	192530	191322	192481	191453		IPF2359.1|Contig4-3091_0018|orf6.7948|CA5207|CaJ7.0110|CaO19_7022|CaJ7_0110|CaO19.7022|IPF2359	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	194025	194303	+	ntar_1072	194025	194303	1	194025	194303					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	194541	197942	+	orf19.7021	194541	197942	1	194541	197942	195079	197781	GPH1	orf6.7947|IPF2357.1|Contig4-3091_0021|Contig4-3091_0022|Contig4-3091_0024|CA5206|CaJ7.0111|CaO19.7021	Putative glycogen phosphorylase; gene regulated by Ssk1p, Mig1p, and Tup1p; fluconazole-induced; localizes to cell surface of hyphal cells, but not yeast-form cells; S. cerevisiae Gph1p is a stress-regulated protein of glycogen metabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	197822	198031	-	ntar_1073	197822	198031	1	198031	197822					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	198204	200652	+	orf19.7020	198204	200652	1	198204	200652	198460	200568		orf6.7946|IPF2356.1|Contig4-3091_0027|CA5205|CaJ7.0112|KEX1|CaO19.7020|CaO19_7020|CaJ7_0112	Protein similar to S. cerevisiae Kex1p, which is a pheromone-processing peptidase; possible Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	200820	201775	+	orf19.7019	200820	201775	1	200820	201775	200872	201708	YML6	IPF2354.1|Contig4-3091_0029|orf6.7945|CA5204|CaJ7.0113|CaO19.7019|CaO19_7019|CaJ7_0113	Protein described as a mitochondrial ribosomal protein; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	202081	203426	+	orf19.7018	202081	203426	2	202081|202692	202263|203426	202217	203082	RPS18	IPF2353.1|RPS18A|Contig4-3091_0033|orf6.7944|CA5203|CaJ7.0114	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	204965	206121	-	orf19.7017	204965	206121	1	206121	204965	206040	205033	YOX1	IPF2351.1|Contig4-3091_0036|orf6.7943|CA5202|CaJ7.0115|CaO19.7017|CaJ7_0115|CaO19_7017	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	209102	211224	+	orf19.7016	209102	211224	1	209102	211224	209134	211122	PHM5	IPF2349.1|Contig4-3091_0040|orf6.7942|CA5201|CaJ7.0116|CaJ7_0116|CaO19_7016|CaO19.7016|IPF2349	Protein not essential for viability; similar to S. cerevisiae Phm5p, which is a vacuolar endopolyphosphatase with a role in phosphate metabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	211315	211522	-	ntar_1074	211315	211522	1	211522	211315					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	211748	212803	+	orf19.7015	211748	212803	1	211748	212803	211801	212739	RPP0	IPF2347.1|Contig4-3091_0041|orf6.7941|CA5200|RPL10E|CaJ7.0118|CaO19.7015|CaO19_7015|CaJ7_0118	Putative ribosomal protein; antigenic in mouse; biofilm induced; cytoplasmic ribosomal subunit, translation factor, and tRNA synthetase genes are downregulated upon phagocytosis by murine macrophage; transcription induced by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	211827	212249	-	orf19.7014	211827	212249	1	212249	211827	212249	211827		IPF2346.1|orf6.7940	[NOT TRANSCRIBED?] Putative protein of unknown function, transcription is positively regulated by Tbf1p; ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	212898	214127	+	orf19.7013	212898	214127	1	212898	214127	212898	214127		IPF2344.1|Contig4-3091_0044|orf6.7939|CA5199|CaJ7.0119|CaO19_7013|CaJ7_0119|CaO19.7013|IPF2334	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	213745	214766	-	orf19.7012	213745	214766	1	214766	213745	214766	214245		IPF2343.1|Contig4-3091_0045|orf6.7938|CA5198|CaJ7.0120|CaO19.7012|MRPS16|CaJ7_0120|CaO19_7012|LPA4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	214874	218604	-	orf19.7011	214874	218604	1	218604	214874	218578	214925		IPF2342.1|Contig4-3091_0046|orf6.7937|CA5197|CaJ7.0121|CaO19_7011|CaJ7_0121|CaO19.7011|IPF2342	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	218711	220703	-	orf19.7010	218711	220703	1	220703	218711	220611	218779		IPF2338.1|Contig4-3091_0047|orf6.7936|CA5196|CaJ7.0122|CaO19.7010|CaJ7_0122|CaO19_7010|IPF2338	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	221546	222589	+	orf19.7009	221546	222589	1	221546	222589	221546	222589		IPF2336.2|Contig4-3091_0050|orf6.7935|CA5195|CaJ7.0123|CaO19_7009|CaJ7_0123|CaO19.7009|GRP8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr7	222726	223154	+	orf19.7007	222726	223154	1	222726	223154	222726	223154			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	223232	226823	-	orf19.7006	223232	226823	2	226823|226556	226630|223232	226653	223296		IPF11756.2|orf6.7932|CA5194|CaJ7.0126|CaO19_7006|CaJ7_0126|IPF11756	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	227090	227285	+	ntar_1075	227090	227285	1	227090	227285					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	227724	227868	-	ntar_1076	227724	227868	1	227868	227724					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	230874	232412	-	orf19.6896	230874	232412	1	232412	230874	232412	230874		IPF20171.1|orf6.7160|CaO19.6896	Predicted ORF in Assemblies 19, 20 and 21; member of a family encoded by FGR6-related genes in the RB2 repeat sequence [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	236122	236562	-	orf19.6897	236122	236562	1	236562	236122	236562	236122		IPF2239.1|Contig4-2914_0012|Contig4-2965_0012|orf6.7161|CaJ7_0131|CaO19_7003|CaO19.6897	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	244174	245485	+	orf19.6898	244174	245485	1	244174	245485	244260	245342		IPF2234.1|Contig4-3039_0003|orf6.7162|CA4579|CaJ7.0132|CaO19.6898|CaO19_6898|CaJ7_0132|IPF2234	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	245096	245793	-	orf19.6898.1	245096	245793	1	245793	245096	245755	245477		IPF2233.1|Contig4-3039_0004|CA4580|CaJ7.s006|CaJ7_s006|IPF2233	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	246057	247319	-	orf19.6899	246057	247319	1	247319	246057	247260	246118		IPF2232.1|Contig4-3039_0005|orf6.7163|CA4581|CaJ7.0133|CaO19.6899|QTH1|CaO19_6899|CaJ7_0133|IPF2232	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	248212	249663	+	orf19.6900	248212	249663	1	248212	249663	248252	249538		IPF2231.1|Contig4-3039_0007|orf6.7164|CA4582|CaJ7.0134|CaO19_6900|CaJ7_0134|CaO19.6900|MDM12	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	249830	250808	+	orf19.6901	249830	250808	1	249830	250808	249862	250770		IPF2229.1|Contig4-3039_0009|orf6.7165|CA4583|CaJ7.0135|CaO19.6901|DCS1|CaO19_6901|CaJ7_0135|IPF2229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	250786	253013	-	orf19.6902	250786	253013	1	253013	250786	252977	250794	DBP7	IPF2228.1|Contig4-3039_0010|orf6.7166|CA4584|CaJ7.0136|CaO19.6902|CaO19_6902|CaJ7_0136|IPF2228	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	253215	254222	-	orf19.6903	253215	254222	1	254222	253215	254185	253349		IPF2227.1|Contig4-3039_0012|orf6.7167|CA4585|CaJ7.0137|CaO19_6903|CaJ7_0137|CaO19.6903|RPC37|IPF2227	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	254332	255411	+	orf19.6904	254332	255411	1	254332	255411	254406	255341	GCN3	IPF2224.1|Contig4-3039_0014|orf6.7168|CA4586|CaJ7.0138|CaO19.6904|CaJ7_0138|CaO19_6904	Protein described as a translation initiator; downregulated in the presence of human whole blood or polymorphonuclear (PMN) cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	255334	256968	-	orf19.6905	255334	256968	1	256968	255334	256808	255375		IPF2223.1|Contig4-3039_0015|orf6.7169|CA4587|CaJ7.0139|CaO19.6905|CaO19_6905|CaJ7_0139|IPF2223	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	257888	259254	+	orf19.6906	257888	259254	2	257888|258701	258441|259254	257914	259126	ASC1	orf6.7170|Contig4-3039_0017|IPF2221.1|Contig4-3039_0016|orf19.6906.1|BEL1|CA4588|CaJ7.0140|CA4589|BEL1.exon2|IPF2220.1|BEL1.exon1	40S ribosomal subunit protein; similar to G-beta subunits; antigenic in human, murine infection; soluble in hyphae; iron, temperature, Gcn4p regulated; amino acid starvation (3-aminotriazole)-, caspofungin-, farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	259189	261114	-	orf19.6907	259189	261114	1	261114	259189	261084	259276		IPF2218.1|Contig4-3039_0019|orf6.7171|CA4590|CaJ7.0141|CaO19.6907|CaO19_6907|CaJ7_0141|IPF2218	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	261172	262706	-	orf19.6908	261172	262706	1	262706	261172	262554	261262		IPF2216.1|Contig4-3039_0020|orf6.7172|CA4591|CaJ7.0142|CaO19.6908|CaJ7_0142|CaO19_6908|IPF2216	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	261392	261619	+	ntar_1077	261392	261619	1	261392	261619					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	263199	263962	+	orf19.6909	263199	263962	1	263199	263962	263354	263860		IPF2215.1|Contig4-3039_0022|orf6.7173|CA4592|CaJ7.0143|CaJ7_0143|CaO19_6909|MED11|CaO19.6909|IPF2215	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	263627	264635	-	orf19.6910	263627	264635	1	264635	263627	264608	263898	PSF1	IPF2214.1|Contig4-3039_0023|orf6.7174|CA4593|CaJ7.0144|CaO19.6910|CaJ7_0144|CaO19_6910|IPF2214	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	264746	265075	-	orf19.6911	264746	265075	1	265075	264746	265075	264746		IPF27390.1|orf6.7175|CaJ7.0145|CaO19_6911|CaJ7_0145|CaO19.6911	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	265205	265638	-	ntar_1078	265205	265638	1	265638	265205					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	265207	265631	+	ntar_1079	265207	265631	1	265207	265631					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	265836	268046	+	orf19.6912	265836	268046	1	265836	268046	266121	267941		IPF2212.2|Contig4-3039_0027|orf6.7176|CA4594|CaJ7.0146|CaO19.6912|CaO19_6912|CaJ7_0146|IPF2212	Putative ethanolamine kinase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	268048	273403	-	orf19.6913	268048	273403	1	273403	268048	273403	268109	GCN2	IPF2209.2|Contig4-2889_0013|orf6.7177|CA4595|CaJ7.0147|CaO19_6913|CaJ7_0147|CaO19.6913	Translation initiation factor 2-alpha (eIF2alpha) kinase; has nonessential role in amino acid starvation response, in contrast to S. cerevisiae homolog; similar to S. cerevisiae Gcn2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	273590	275831	+	orf19.6915	273590	275831	1	273590	275831	273671	275719	MRE11	IPF2205.1|Contig4-2895_0002|orf6.7179|CA4596|CaJ7.0149|CaJ7_0149|CaO19_6915|CaO19.6915	Protein described as DNA double-strand break repair factor; involved in response to oxidative stress and drug resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	275665	276829	-	orf19.6916	275665	276829	1	276829	275665	276747	275788		IPF2203.1|Contig4-2895_0003|orf6.7180|CA4597|CaJ7.0150|CaO19_6916|CaJ7_0150|ATP11|CaO19.6916	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	276990	277813	-	orf19.6917	276990	277813	1	277813	276990	277738	277184		IPF20019.1|Contig4-2895_0005|orf6.7181|CA4598|CaJ7.0151|CaO19_6917|CaJ7_0151|CaO19.6917|FMP28|IPF20019	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	276994	277219	+	ntar_1080	276994	277219	1	276994	277219					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	277907	279713	+	orf19.6918	277907	279713	1	277907	279713	278055	279503		IPF2200.2|Contig4-2895_0007|orf6.7182|CA4599|CaJ7.0152|CaO19.6918|CaJ7_0152|CaO19_6918|IPF2200	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	281285	282544	+	orf19.6919	281285	282544	1	281285	282544	281377	282504		IPF2199.2|orf6.7183|CA4600|CaJ7.0153|CaJ7_0153|CaO19_6919|CaO19.6919|IPF2199	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	283899	284141	-	ntar_1081	283899	284141	1	284141	283899	284141	283947			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	284169	284415	-	ntar_1082	284169	284415	1	284415	284169					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	285534	286610	+	orf19.6920	285534	286610	1	285534	286610	285902	286294		IPF2195.1|Contig4-2895_0017|orf6.7184|CA4601|CaJ7.0154|CaO19.6920|CaO19_6920|CaJ7_0154|IPF2195	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	286659	289251	-	orf19.6921	286659	289251	1	289251	286659	289095	286777		IPF2194.3|orf6.7185|CA6241|CaJ7.0155|CaO19.6921|IPF2194.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	289570	289830	+	ntar_1083	289570	289830	1	289570	289830					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	289898	291653	-	orf19.6588	289898	291653	1	291653	289898	291141	290113		orf19.13941|IPF20610.1|IPF18160.1|orf6.7576|CA4896|CaJ7.0156|CaO19.6588|NBP2|CaO19_6588|CaJ7_0156|CaO19.13941|IPF18160	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	292151	293326	+	orf19.6587	292151	293326	1	292151	293326	292254	293033		orf19.13940|IPF20628.1|IPF18161.1|Contig4-2926_0004|orf6.7575|YDR152W|CA4895|CaJ7.0157|CaO19.13940|CaO19.6587|CaJ7_0157|CaO19_6587|IPF18161	Protein similar to S. cerevisiae Ydr152wp; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	293944	294511	-	ntar_1084	293944	294511	1	294511	293944					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	294976	295353	-	ntar_1085	294976	295353	1	295353	294976					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	295505	296973	-	orf19.6586	295505	296973	1	296973	295505	296775	295834		orf19.13939|IPF20613.1|IPF1617.2|Contig4-3066_0026|orf6.7574|CA4894|CaJ7.0158|CaO19.6586|CaJ7_0158|CaO19_6586|CaO19.13939|IPF1617	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1; shows colony morphology-related gene regulation by Ssn6p; induced by nitric oxide, 17-beta-estradiol, ethynyl estradiol; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	297519	297708	+	ntar_1086	297519	297708	1	297519	297708					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	298095	298362	+	ntar_1087	298095	298362	1	298095	298362					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	302301	303061	+	orf19.6585	302301	303061	1	302301	303061	302677	303045		orf19.13938|IPF20669.1|IPF1621.1|Contig4-3066_0017|orf6.7573|CA4893|CaJ7.0159|CaO19.6585|CaO19.13938|CaJ7_0159|CaO19_6585|IPF1621	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	303017	305451	-	orf19.6584	303017	305451	1	305451	303017	305372	303153	PRT1	orf19.13937|IPF20551.1|IPF1623.1|Contig4-3066_0014|Contig4-3066_0016|orf6.7572|CA4892|CaJ7.0160|CaO19_6584|CaJ7_0160|CaO19.13937|CaO19.6584	Putative translation initiation factor; mutation confers hypersensitivity to roridin A and verrucarin A; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	305591	308922	-	orf19.6583	305591	308922	1	308922	305591	308850	305830		orf19.13936|IPF20699.1|IPF1627.1|Contig4-3066_0013|orf6.7571|CA4891|CaJ7.0161|CaO19.13936|CaJ7_0161|CaO19_6583|CaO19.6583|IPF1627	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	309107	310229	-	orf19.6582	309107	310229	3	310229|310103|309979	310165|310055|309107	310167	309231	PRE10	orf19.13935|PRS1|IPF20631.1|IPF1628.1|Contig4-3066_0011|orf6.7570|CA4890|CaJ7.0162|CaO19.6582|CaO19.13935	Alpha7 (C8) subunit of the 20S proteasome; multiple phosphorylated residues; transcription is induced upon filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	310325	311855	+	orf19.6581	310325	311855	1	310325	311855	310447	311787		orf19.13934|IPF20599.1|IPF1629.1|Contig4-3066_0010|orf6.7569|CA4889|CaJ7.0163|CaO19.6581|CaO19_6581|CaJ7_0163|CaO19.13934|IPF1629	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	312498	313488	+	orf19.6580	312498	313488	1	312498	313488	312572	313264		orf19.13933|IPF20635.1|IPF1631.2|Contig4-2945_0012|Contig4-3066_0007|orf6.7568|CA4888|CaJ7.0164|CaO19.6580|CaO19_6580|CaJ7_0164|CaO19.13933|IPF1631	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	313739	315149	+	orf19.6579	313739	315149	1	313739	315149	313807	315117		orf19.13932|IPF20602.1|IPF1632.1|Contig4-3066_0005|orf6.7567|CA4887|CaJ7.0165|CaJ7_0165|CaO19_6579|CaO19.6579|CaO19.13932|IPF1632	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	314661	315407	-	ntar_1088	314661	315407	1	315407	314661					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	316935	318928	+	orf19.6578	316935	318928	1	316935	318928	317086	318729		orf19.13931|IPF20585.1|IPF1634.1|Contig4-3066_0002|orf6.7566|CA4886|CaJ7.0166|CaO19.6578|CaO19.13931|CaO19_6578|CaJ7_0166|IPF1634	Predicted membrane transporter, member of the vesicular neurotransmitter (VNT) family, major facilitator superfamily (MFS); downregulated in core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	320478	322558	+	orf19.6577	320478	322558	1	320478	322558	320557	322389	FLU1	orf19.13930|IPF20574.1|IPF1636.1|orf6.7565|TPO1|CA4885|CaJ7.0168|CaO19.13930|CaO19.6577|CaO19_6577|CaJ7_0168|IPF1636	Multidrug efflux pump of the plasma membrane; member of the MDR family of the MFS (major facilitator superfamily) of transporters; preferred substrate may be mycophenolic acid; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	322603	322846	-	ntar_1089	322603	322846	1	322846	322603					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	322905	323231	+	orf19.6575	322905	323231	1	322905	323231	322905	323231			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	325172	326695	+	orf19.6574	325172	326695	1	325172	326695	325172	326695	ALK6	orf19.13927|IPF20591.1|IPF1640.1|Contig4-2887_0006|orf6.7562|CA4884|CaJ7.0170|CaO19.13927|CaJ7_0170|CaO19_6574|CaO19.6574	Protein described as cytochrome P-450 of N-alkane-induced detoxification; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	328989	329244	+	ntar_1090	328989	329244	1	328989	329244					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	329582	336627	+	orf19.6573	329582	336627	1	329582	336627	329717	336475	BEM2	orf19.13926|IPF20639.1|IPF1649.2|Contig4-2887_0010|Contig4-2887_0011|orf6.7561|CA4883|CaJ7.0172|CaO19.13926|CaJ7_0172|CaO19_6573|CaO19.6573|IPF1649	Putative Rho1p GTPase activating protein (GAP); serum-induced transcription [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	336493	338329	-	orf19.6570	336493	338329	1	338329	336493	337899	336679	NUP	orf19.13923|orf6.7558|IPF20601.1|IPF1651.1|Contig4-2887_0014|CA4882|CaJ7.0175|NUP32|CaO19.6570|CaO19.13923|CaJ7_0175|CaO19_6570|IPF1651	Nucleoside permease; adenosine and guanosine are substrates, whereas cytidine, adenine, guanine, uridine, uracil are not; similar to a nucleoside permease of S. pombe; possibly processed by Kex2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	338425	340022	-	orf19.6569	338425	340022	1	340022	338425	339885	338749		orf19.13922|IPF20612.1|IPF1652.2|Contig4-2887_0015|orf6.7557|CA4881|CaJ7.0176|CaO19.13922|NUP31|CaJ7_0176|CaO19_6569|CaO19.6569|IPF1652	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	340449	344150	+	orf19.6568	340449	344150	1	340449	344150	340592	343978	SMC6	orf19.13921|IPF20688.1|IPF1656.2|Contig4-2941_0016|Contig4-2941_0018|orf6.7556|CA4880|CaJ7.0178|RHC18|CaO19.13921|CaO19.6568|CaJ7_0178|CaO19_6568	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression; S. cerevisiae ortholog is not cell-cycle regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	343941	345627	-	orf19.6566	343941	345627	1	345627	343941	345577	344246		orf19.13919|IPF20598.1|IPF1660.1|Contig4-2941_0014|orf6.7554|CA4879|CaJ7.0179|CaO19.6566|CaO19.13919|CaO19_6566|CaJ7_0179|IPF1660	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	345759	346996	+	orf19.6565	345759	346996	1	345759	346996	345796	346920		orf19.13918|IPF20609.1|IPF1663.1|Contig4-2941_0012|orf6.7553|CA4878|CaJ7.0180|CaO19.13918|OXA1|CaJ7_0180|CaO19_6565|CaO19.6565	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	347193	347898	+	orf19.6563.1	347193	347898	2	347193|347341	347269|347898	347247	347584		IPF20539.1|IPF1665.1|Contig4-2941_0010|CA6231|IPF1665	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	347665	350071	-	orf19.6563	347665	350071	1	350071	347665	349794	347815		orf19.13916|IPF20564.1|IPF1667.1|Contig4-2941_0009|orf6.7551|CA4877|CaJ7.0182|CaO19.6563|CaO19.13916|CaO19_6563|CaJ7_0182|IPF1667	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	350991	352332	+	orf19.6562	350991	352332	1	350991	352332	350991	352286	RNH35	orf19.13915|IPF20603.1|IPF1669.1|Contig4-2941_0008|orf6.7550|CA4876|CaJ7.0183|CaO19_6562|CaJ7_0183|CaO19.13915|CaO19.6562	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	351604	352172	-	ntar_1091	351604	352172	1	352172	351604					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	352514	354302	+	orf19.6561	352514	354302	1	352514	354302	352680	354113	LAT1	orf19.13914|IPF20596.1|IPF1673.1|Contig4-2941_0006|orf6.7549|CA4875|CaJ7.0184|CaJ7_0184|CaO19_6561|CaO19.6561|CaO19.13914	Protein described as dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	354377	356259	+	orf19.6559	354377	356259	2	354377|355590	355449|356259	354544	356141		orf19.13912|IPF20619.1|IPF1674.1|Contig4-2941_0005|orf6.7547|CaJ7.0186|orf19.6558.1|CA4874|IPF1674|CA4873|IPF1674.3|IPF1675.1	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	355701	355951	-	ntar_1092	355701	355951	1	355951	355701					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	356056	358669	-	orf19.6558	356056	358669	1	358669	356056	358624	356177		orf19.13911|IPF20542.1|IPF1677.1|Contig4-2941_0003|orf6.7546|CA4872|CaJ7.0187|CaJ7_0187|CaO19_6558|CaO19.6558|SEC232|sec231|CaO19.13911	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	358993	361088	+	orf19.6557	358993	361088	1	358993	361088	359158	360897		orf19.13910|IPF20579.1|IPF1680.2|orf6.7545|CA4871|CaJ7.0188|CaJ7_0188|CaO19_6557|AMD23|CaO19.13910|CaO19.6557|IPF1680	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	361267	361526	-	ntar_1093	361267	361526	1	361526	361267					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	362557	362805	+	ntar_1094	362557	362805	1	362557	362805					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	363269	364547	-	orf19.6556	363269	364547	1	364547	363269	364477	363743		orf19.13909|IPF19569.2|IPF19568.1|orf6.330|orf6.7544|CA4870|CaJ7.0190|CaJ7_0190|CaO19_6556|CaO19.6556|IPF19568	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	369310	369888	+	orf19.6555	369310	369888	1	369310	369888	369532	369888		orf19.13908|IPF12086.3|IPF27693.1|Contig4-2437_0006|orf6.5259|orf6.7543|CaJ7.0191|CaO19.6555|CaJ7_0191|CaO19_6555|CA3103|IPF12086|IPF12086.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr7	369388	369952	-	ntar_1095	369388	369952	1	369952	369388					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	369893	371298	+	orf19.6554	369893	371298	1	369893	371298	370382	371209		orf19.13907|IPF12084.2|IPF27690.1|Contig4-2437_0009|orf6.5260|CA3104|CaJ7.0193|CaO19.13907|CaO19.6554|CaO19_6554|CaJ7_0193|IPF12084	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	371419	372802	+	orf19.6553	371419	372802	1	371419	372802	371483	372664		orf19.13906|IPF20605.1|IPF12083.2|Contig4-2437_0010|Contig4-2620_0015|orf6.5261|CA3105|CaJ7.0194|CaJ7_0194|CaO19_6553|CaO19.13906|CaO19.6553|IPF12083	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	372909	374018	+	orf19.6552	372909	374018	1	372909	374018	373131	373895		orf19.13905|IPF20621.1|IPF11821.1|Contig4-2620_0014|orf6.5262|CA3106|CaJ7.0195|ERV2|CaO19.13905|CaO19.6552|CaJ7_0195|CaO19_6552|IPF11821	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	373862	374407	-	orf19.6551.1	373862	374407	2	374407|374150	374219|373862	374340	374000	STE18	IPF20592.1|IPF11823.2	ORF Predicted by Annotation Working Group; similar to S. cerevisiae Ste18p; expressed in opaque or white MTLa/MTLa or MTLalpha/MTLalpha, but not MTLa/MTLalpha cells; MTLa1p, MTLalpha2p bind promoter region [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	374452	375371	-	orf19.6551	374452	375371	1	375371	374452	375266	374592		orf19.13904|IPF20637.1|IPF11824.2|Contig4-2620_0009|orf6.5263|CA3107|CaJ7.0196|CaJ7_0196|CaO19_6551|GOS1|CaO19.13904|CaO19.6551	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	375608	376843	+	orf19.6550	375608	376843	1	375608	376843	375746	376630		orf19.13903|IPF20615.1|IPF11826.1|Contig4-2620_0007|orf6.5264|CA3108|CaJ7.0197|CaO19.6550|CaO19_6550|CaJ7_0197|CaO19.13903|IPF11826	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	377091	377976	-	orf19.6548	377091	377976	1	377976	377091	377787	377224	ISU1	orf19.13901|orf6.5266|IPF20648.1|IPF11829.1|Contig4-2620_0004|CA3109|CaJ7.0199|CaO19_6548|CaJ7_0199|CaO19.6548|CaO19.13901|IPF11829	Protein with similarity to NifU; possible role in iron-sulfur cluster biogenesis; transcriptionally regulated by iron; expression greater in low iron; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	379041	379388	+	orf19.6547	379041	379388	1	379041	379388	379041	379388		orf19.13900|IPF20684.1|IPF27704.1|orf6.5267|CaJ7.0200|CaO19.6547|CaO19.13900|CaJ7_0200|CaO19_6547	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	379757	379990	-	ntar_1096	379757	379990	1	379990	379757					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	380169	384432	+	orf19.6544	380169	384432	1	380169	384432	380244	384338	LPI9	orf19.13897|IPF20671.1|IPF15433.2|Contig4-2763_0002|orf6.5271|CA3110|CaJ7.0205|CaJ7_0205|CaO19_6544|CaO19.6544|CaO19.13897	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	384385	385434	-	orf19.6541	384385	385434	1	385434	384385	385385	384489	RPL5	orf19.13894|IPF20618.1|IPF10601.1|Contig4-2763_0003|orf6.5273|CA3111|CaJ7.0206|CaO19_6541|CaJ7_0206|CaO19.6541|CaO19.13894	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	385902	389242	-	orf19.6540	385902	389242	1	389242	385902	388800	385960	PFK2	orf19.13893|IPF20535.1|IPF10598.1|Contig4-2763_0005|orf6.5274|CA3112|CaJ7.0207|CaO19_6540|CaJ7_0207|CaO19.6540|CaO19.13893	Beta subunit of phosphofructokinase (PFK), which is a heteromultimer of Pfk1p and Pfk2p; PFK is activated by fructose 2,6-bisphosphate or AMP, inhibited by ATP; downregulated upon phagocytosis or hyphal growth; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	389258	389619	-	ntar_1098	389258	389619	1	389619	389258	389449	389258			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	389403	389879	+	ntar_1097	389403	389879	1	389403	389879					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	390088	391981	+	orf19.6539	390088	391981	1	390088	391981	390349	391845		orf19.13892|IPF15737.2|IPF27689.1|Contig4-3024_0004|Contig4-3024_0006|orf6.5275|CA3113|CaJ7.0208|RVB2|CaO19.13892|CaJ7_0208|CaO19_6539|CaO19.6539|IPF15737	Predicted ORF in Assemblies 19, 20 and 21; heterozygous null mutant displays sensitivity to virgineone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	391755	392728	-	orf19.6538	391755	392728	1	392728	391755	392513	392022	VMA11	orf19.13891|IPF20656.1|IPF5167.3|Contig4-3024_0007|orf6.5276|orf6.7622|CA4937|CaJ7.0209|TFP3|CaJ7_0209|CaO19_6538|CaO19.6538|IPF5167.2	Predicted ortholog of S. cerevisiae Tfp3p, which is the c' subunit of the V0 subcomplex of the vacuolar ATPase; required for hemoglobin-iron utilization [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	392827	394235	+	orf19.6537	392827	394235	1	392827	394235	393005	393697		orf19.13890|IPF20633.1|IPF5166.1|Contig4-3024_0011|orf6.7623|CA4938|CaJ7.0210|CaO19.6537|CaO19.13890|CaO19_6537|CaJ7_0210|IPF5166	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	394310	399543	+	orf19.6536	394310	399543	1	394310	399543	394417	399360	IQG1	orf19.13889|IPF20657.1|IPF5165.2|Contig4-3024_0013|Contig4-3024_0015|orf6.7624|CA4939|CaJ7.0211|CaJ7_0211|CaO19_6536|CaO19.13889|CaO19.6536	Component of actomyosin ring at bud neck; cell-cycle regulated serine phosphorylation at CDK sites regulates association with formins Bni1p and Bnr1p, Iqg1p degradation, and ring disassembly; mutation causes severe cytokinetic defects [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	399187	401832	-	orf19.6534.2	399187	401832	2	401832|401585	401740|399187	401744	399689		orf19.13888|IPF20667.1|IPF5159.1|Contig4-3024_0017|Contig4-3024_0018|Contig4-3024_0019|orf6.7625|CA4942|CA4940|CaJ7.0212|orf19.6535|CRN1.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	401552	402022	+	orf19.6534	401552	402022	1	401552	402022	401552	402022		orf19.13887|IPF20649.1|IPF5158.1|Contig4-3024_0020|Contig4-3024_0021|orf6.7626|CA4943|CaO19.13887|CaO19.6534|IPF5158	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	402312	404200	+	orf19.6533	402312	404200	1	402312	404200	402406	404013	MSK1	orf19.13886|IPF20587.1|IPF5156.2|Contig4-3024_0022|orf6.7627|CA4944|CaJ7.0215|CaJ7_0215|CaO19_6533|CaO19.6533|CaO19.13886	Predicted ORF in Assemblies 19, 20 and 21; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	404066	405221	-	orf19.6532	404066	405221	1	405221	404066	405125	404175		orf19.13885|IPF20616.1|IPF5154.2|Contig4-3024_0023|orf6.7628|CA4945|CaJ7.0216|FLX1|CaO19.6532|CaO19_6532|CaJ7_0216|CaO19.13885	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	405413	405897	-	orf19.6531.1	405413	405897	1	405897	405413	405841	405644	TOM71	IPF20562.1|IPF5151.1|Contig4-3024_0026|CA4946|CaJ7.s008|CaJ7_s008	ORF Predicted by Annotation Working Group; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	406542	408305	+	orf19.6531	406542	408305	1	406542	408305	406704	408140	NUC2	orf19.13884|IPF20595.1|IPF5150.1|Contig4-3024_0028|orf6.7629|CA4947|CaJ7.0217|CaO19.13884|CaO19.6531|CaO19_6531|CaJ7_0217	Protein described as NADH-ubiquinone oxidoreductase; identified in detergent-resistant membrane fraction (possible lipid raft component); alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	408234	409326	-	orf19.6530	408234	409326	1	409326	408234	409302	408388		orf19.13883|orf6.7630|IPF20620.1|IPF5149.1|Contig4-3024_0029|CA4948|CaJ7.0218|CaO19.13883|CaO19.6530|CaO19_6530|CaJ7_0218|IPF5149	Similar to bacterial DnaJ; transcriptionally regulated by iron; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	410427	410700	-	ntar_1099	410427	410700	1	410700	410427	410642	410427			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	410720	412282	+	orf19.6529	410720	412282	1	410720	412282	411055	411789	CDC34	orf19.13882|IPF20629.1|IPF5145.1|Contig4-3024_0032|orf6.7631|CA4949|CaJ7.0219|UBC3|CaO19.6529|CaJ7_0219|CaO19_6529|CaO19.13882	Transcription is regulated by Nrg1p and Tup1p, and by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	412205	413059	-	orf19.6528	412205	413059	1	413059	412205	412924	412313		orf19.13881|IPF20638.1|IPF5143.1|Contig4-3024_0033|orf6.7632|CA4950|CaJ7.0220|CaO19.13881|CaO19.6528|CaJ7_0220|CaO19_6528|IPF5143	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	413170	416769	-	orf19.6527	413170	416769	1	416769	413170	416612	413295		orf19.13880|IPF20693.1|IPF13607.2|Contig4-2478_0007|orf6.7633|CA4951|CaJ7.0221|CaJ7_0221|CaO19_6527|PRM10|CaO19.6527|CaO19.13880|IPF13607	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	418224	419361	+	orf19.6526	418224	419361	1	418224	419361	418443	419297		orf19.13879|IPF20625.1|IPF13609.2|Contig4-2478_0002|Contig4-3089_0053|orf6.7634|CA4952|CaJ7.0222|CaO19.6526|RBD2|CaO19.13879|CaJ7_0222|CaO19_6526|IPF13609	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	419701	422181	+	orf19.6525	419701	422181	1	419701	422181	419932	421986		orf19.13878|IPF20552.1|IPF4567.2|Contig4-3089_0049|Contig4-3089_0050|orf6.7635|CA4953|CaJ7.0223|IPF4567.3f|IPF4567.3	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	422152	423519	-	orf19.6524	422152	423519	1	423519	422152	423405	422233		orf19.13877|IPF20607.1|IPF4568.1|Contig4-3089_0047|Contig4-3089_0048|orf6.7636|CA4954|CaJ7.0224|CaO19.6524|TOM40|CaO19.13877|CaO19_6524|CaJ7_0224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	423725	425008	+	ntar_1100	423725	425008	1	423725	425008	424877	425008			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	429774	431979	-	orf19.6522	429774	431979	1	431979	429774	431707	429947		orf19.13875|IPF20575.1|IPF4580.2|Contig4-3089_0035|orf6.7638|CA4955|CaJ7.0227|CaO19.13875|CaO19.6522|CaO19_6522|CaJ7_0227|IPF4580	Putative allantoate permease; fungal-specific (no human or murine homolog); Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	432217	433893	-	orf19.6520	432217	433893	1	433893	432217	433893	432217		orf19.13873|IPF20583.1|IPF4583.2|Contig4-3089_0033|orf6.7640|CA4956|CaJ7.0229|CaO19.13873|CaO19.6520|CaJ7_0229|CaO19_6520|IPF4583	Putative allantoate permease; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	435231	437288	-	orf19.6518	435231	437288	1	437288	435231	437288	435303		orf19.13871|IPF20569.1|IPF4588.2|Contig4-3089_0030|orf6.7642|CA4957|CaJ7.0231|CaO19.13871|CaJ7_0231|CaO19_6518|CaO19.6518|IPF4588|CA2507|IPF18459.3eoc|IPF18459.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr7	438034	439324	+	orf19.6517	438034	439324	1	438034	439324	438038	439228	RAD14	orf19.13870|IPF20611.1|IPF4591.1|Contig4-3089_0028|orf6.7643|CA4958|CaJ7.0232|CaJ7_0232|CaO19_6517|CaO19.6517|CaO19.13870	Transcription is regulated upon yeast-hyphal switch; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	439490	441741	+	orf19.6515	439490	441741	1	439490	441741	439531	441654	HSP90	orf19.13868|orf6.7645|IPF20556.1|IPF4596.2|Contig4-3089_0026|CA4959|CaJ7.0234|CaO19.6515|CaO19.13868|CaJ7_0234|CaO19_6515	Essential chaperone of Hsp90 family, activated by heat shock and stress; regulates several signal transduction pathways; localizes to surface of hyphae, but not yeast-form cells; mediates echinocandin resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	444061	444994	-	ntar_1101	444061	444994	1	444994	444061	444716	444507			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	445334	445896	-	ntar_1102	445334	445896	1	445896	445334	445831	445703			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	445802	445960	+	ntar_1103	445802	445960	1	445802	445960					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	449719	451046	-	orf19.6514	449719	451046	1	451046	449719	450910	449876	CUP9	orf19.13867|IPF20614.1|IPF3912.1|Contig4-3089_0018|orf6.7646|CA4960|CaJ7.0235|CaO19.13867|CaO19_6514|CaJ7_0235|CaO19.6514|IPF3912	Protein of unknown function, upregulated in clinical isolates from HIV+ patients with oral candidiasis; transcription reduced upon yeast-hyphal switch; ketoconazole-induced; Plc1p-regulated; shows colony morphology-related Ssn6p regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	455152	457547	-	orf19.6512	455152	457547	1	457547	455152	457369	455366	EXO70	orf19.13865|IPF20563.1|IPF3916.2|Contig4-3089_0010|orf6.7648|CA4961|CaJ7.0236|CaO19.6512|CaJ7_0236|CaO19_6512|CaO19.13865|IPF3916	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	458168	460874	+	orf19.6511	458168	460874	1	458168	460874	458226	460724	LIG1	orf19.13864|IPF20541.1|IPF3918.2|Contig4-3089_0004|Contig4-3089_0005|orf6.7649|CA4962|TRL1|CaJ7.0238|CaO19_6511|CaJ7_0238|CaO19.13864|CaO19.6511	tRNA ligase; functional homolog of S. cerevisiae Trl1p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	461000	461371	+	orf19.6510	461000	461371	1	461000	461371	461000	461371	GRX1	orf19.13863|orf6.7650|IPF20674.1|IPF3919.2|Contig4-3089_0003|CA4963|CaJ7.0239|CaO19.6510|CaJ7_0239|CaO19_6510|CaO19.13863|IPF3919	Protein described as glutaredoxin; transcriptionally regulated by iron; expression greater in low iron [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	461556	461844	-	ntar_1104	461556	461844	1	461844	461556					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	461628	462335	+	orf19.6509	461628	462335	1	461628	462335	461684	462154		orf19.13862|IPF20646.1|IPF3920.1|Contig4-3089_0002|orf6.7651|CA4964|CaJ7.0240|CaO19_6509|CaJ7_0240|TTR12|CaO19.13862|CaO19.6509|IPF3920	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	462059	463232	-	orf19.6508	462059	463232	1	463232	462059	463059	462247		orf19.13861|IPF20627.1|IPF3921.2|Contig4-3089_0054|orf6.7652|CA4965|CaJ7.0241|LST7|CaO19.6508|CaO19.13861|CaO19_6508|CaJ7_0241|IPF3921	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	463411	464782	+	orf19.6507	463411	464782	2	463411|463638	463576|464782	463558	464782		orf19.13860|IPF20594.1|IPF3923.1|Contig4-2803_0010|orf6.7653|CA4966|CaJ7.0243|SPX5|CaO19.13860|CaJ7_0243|CaO19_6507|CaO19.6507|IPF3923	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	465023	467256	+	orf19.6506	465023	467256	1	465023	467256	465070	467136		orf19.13859|IPF20561.1|IPF3927.2|Contig4-2803_0009|orf6.7654|CA4967|CaJ7.0245|CaO19.6506|CaO19.13859|CaO19_6506|CaJ7_0245|IPF3927	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	467197	467805	-	orf19.6503	467197	467805	1	467805	467197	467773	467312		orf19.13856|IPF20659.1|IPF3928.1|Contig4-2803_0007|orf6.7657|CA4968|CaJ7.0247|CaO19.13856|MRP49|CaO19_6503|CaJ7_0247|CaO19.6503|IPF3928	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	468127	469164	+	orf19.6502	468127	469164	1	468127	469164	468127	469164		orf19.13855|IPF3930|IPF18613.2|IPF3930.2|Contig4-2803_0006|orf6.3367|orf6.7658|CA4969|CaJ7.0248|CaO19_6502|CaJ7_0248|CaO19.6502	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; upregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	469502	470374	+	orf19.6501	469502	470374	1	469502	470374	469502	470374		orf19.13854|IPF3931.2|IPF18151.2|Contig4-2803_0005|orf6.3366|orf6.7659|CA1733|CaJ7.0249|YJU99|CaO19.6501|CaJ7_0249|CaO19_6501|IPF3931	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr7	470039	471798	-	orf19.6500	470039	471798	1	471798	470039	471728	470409	ECM42	orf19.13853|IPF20600.1|IPF3933.2|Contig4-2803_0003|orf6.3365|ECM40|CA1732|CaJ7.0250|CaO19.13853|CaO19.6500|CaO19_6500|CaJ7_0250	Putative ornithine acetyltransferase; fungal-specific (no human or murine homolog); Gcn2p-, Gcn4p-regulated; clade-specific gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	472190	475863	+	orf19.6499	472190	475863	1	472190	475863	472190	475846		orf19.13852|IPF20679.1|IPF8437.2|Contig4-2822_0008|orf6.3364|CA1731|CaJ7.0251|CaO19.13852|CaJ7_0251|CaO19_6499|CaO19.6499|IPF8437	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	475876	476974	-	orf19.6498	475876	476974	1	476974	475876	476931	475903		orf19.13851|IPF20606.1|IPF8439.1|Contig4-2822_0006|orf6.3363|CA1730|CaJ7.0252|CaO19.6498|CaJ7_0252|CaO19_6498|CaO19.13851|IPF8439	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	477138	477881	-	orf19.6496	477138	477881	1	477881	477138	477807	477169	TRS33	orf19.13849|IPF20634.1|IPF8440.1|Contig4-2822_0004|orf6.3361|CA1729|CaJ7.0254|CaO19.13849|CaO19.6496|CaJ7_0254|CaO19_6496|IPF8440	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	478122	479619	-	ntar_1105	478122	479619	1	479619	478122	478701	478534			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	478705	479250	+	ntar_1106	478705	479250	1	478705	479250	479083	479250			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	479490	482804	+	orf19.6494	479490	482804	1	479490	482804	480373	482487	WHI3	orf19.13847|IPF20559.1|IPF8447.2|Contig4-2822_0002|orf6.3359|CA1728|CaJ7.0255|CaO19_6494|CaJ7_0255|CaO19.13847|WHI4|CaO19.6494	Predicted ORF in Assemblies 19, 20 and 21; induced during infection of murine kidney, compared to growth in vitro; has murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	483018	483224	-	ntar_1107	483018	483224	1	483224	483018	483224	483057			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	483239	483631	+	orf19.6493	483239	483631	1	483239	483631	483239	483631		orf19.13846|IPF8448.2|IPF19356.2|Contig4-2822_0001|orf6.3358|CA1727|CaJ7.0257|CaO19.6493|CaO19_6493|CaJ7_0257|IPF8448	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	483757	485295	-	orf19.6492	483757	485295	1	485295	483757	485036	483810		orf19.13845|IPF20604.1|IPF17347.2|orf6.289|CA0044|CaJ7.0258|CaJ7_0258|CaO19_6492|CaO19.13845|CaO19.6492|IPF17347	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	486519	486872	+	orf19.6491	486519	486872	1	486519	486872	486519	486872		orf19.13844|IPF20673.1|IPF27698.1|Contig4-1746_0005|orf6.1076|CaJ7.0259|CaO19.13844|CaO19.6491|CaO19_6491|CaJ7_0259	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	487109	487966	+	orf19.6489	487109	487966	1	487109	487966	487109	487966	FMP45	orf19.13842|YDL225C|IPF20624.1|IPF6624.2|Contig4-2725_0016|orf6.1074|YDL222C|CA0293|CaJ7.0261|CaO19_6489|CaJ7_0261|CaO19.6489|CaO19.13842|IPF6624	Protein induced during the mating process; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B; alkaline downregulated; repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	489299	491008	+	orf19.6488	489299	491008	1	489299	491008	489299	491008		orf19.13841|IPF19855.1|IPF19854.1|Contig4-2725_0013|Contig4-2725_0014|orf6.1018|orf6.1073|CA0292|CaJ7.0262|CaJ7_0262|CaO19_6488|CaO19.6488|IPF19855	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	492240	492731	+	orf19.6487	492240	492731	1	492240	492731	492273	492731		IPF19057.2|IPF6620.2|Contig4-2725_0009|orf6.1019|CA6230|CaJ7.0263|LDG2|CaO19_6487|CaJ7_0263|CaO19.6487|IFW1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr7	493961	494419	+	orf19.6486	493961	494419	1	493961	494419	493961	494419	LDG3	orf19.13840|IPF20654.1|IPF19071.2|orf6.3709|orf6.1020|CA6229|CaJ7.0264|CaO19.6486|CaJ7_0264|CaO19_6486|IFW2|CA1991|IPF6617.repeat2|IPF6619.1	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	495607	496065	+	orf19.6484	495607	496065	1	495607	496065	495607	496065		orf19.13838|IPF20654.1|IPF6617.2|Contig4-2725_0006|orf6.3709|orf6.3710|CA1992|CaJ7.0266|CaO19_6484|CaJ7_0266|LDG4|CaO19.6484|CaO19.13838|IFW3|IPF6617.repeat1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	496646	497552	+	orf19.6482	496646	497552	1	496646	497552	496851	497402		orf19.13836|IPF20644.1|IPF6614.2|orf6.3712|CA1993|CaJ7.0268|CaO19_6482|CaJ7_0268|CaO19.13836|CaO19.6482|IPF6614	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	497779	500061	+	orf19.6481	497779	500061	1	497779	500061	497855	499960	YPS7	orf19.13835|IPF20555.1|IPF6613.2|Contig4-2725_0001|orf6.3713|CA1994|CaJ7.0269|CaJ7_0269|CaO19_6481|CaO19.13835|CaO19.6481|IPF6613	Putative aspartic-type endopeptidase with limited ability to degrade alpha pheromone; mutants show increased sensitivity to alpha pheromone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	500010	501649	-	orf19.6480	500010	501649	1	501649	500010	501344	500154		orf19.13834|IPF20608.1|IPF6612.1|Contig4-2725_0017|orf6.3714|CA1995|CaJ7.0270|CaO19.6480|YMD8|CaO19.13834|CaJ7_0270|CaO19_6480|IPF6612	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	501774	502282	-	ntar_1108	501774	502282	1	502282	501774	502282	502091			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	502455	505115	+	orf19.6479	502455	505115	1	502455	505115	502656	504995		orf19.13833|IPF20545.1|IPF6609.1|Contig4-2536_0003|orf6.3715|CA1996|CaJ7.0271|CaO19_6479|CaJ7_0271|SEC1|CaO19.6479|CaO19.13833	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	504342	504519	-	ntar_1109	504342	504519	1	504519	504342					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	504762	504984	-	ntar_1110	504762	504984	1	504984	504762					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	505401	510349	+	orf19.6478	505401	510349	1	505401	510349	505458	510200	YCF1	orf19.13832|IPF20661.1|IPF6607.2|Contig4-2536_0005|orf6.3716|CA1997|CaJ7.0273|CaO19_6478|CaJ7_0273|CaO19.13832|CaO19.6478	Putative glutathione S-conjugate transporter with similarity to S. cerevisiae Ycf1p; MRP/CFTR-subfamily, ABC transporter family; human neutrophil-induced; oxidative stress-induced via Cap1p; possible association with multidrug resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	510222	511651	-	orf19.6477	510222	511651	1	511651	510222	511622	510342		orf19.13831|IPF20597.1|IPF6605.2|Contig4-2536_0006|orf6.3717|CA1998|CaJ7.0274|CaO19.13831|CaO19.6477|CaO19_6477|CaJ7_0274|IPF6605	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	511766	514421	-	orf19.6476	511766	514421	1	514421	511766	514210	511808		orf19.13830|IPF19513.1|IPF18571.2|Contig4-2536_0007|orf6.3718|orf6.509|CA1999|CaJ7.0275|CaO19.6476|CaJ7_0275|CaO19_6476|IPF19513	Predicted ORF in Assemblies 19, 20 and 21; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	515715	516128	+	orf19.6475	515715	516128	1	515715	516128	515715	516128		orf19.13829|IPF20664.1|IPF12659.2|Contig4-2430_0011|orf6.2219|orf6.510|CaJ7.0276|CaO19.6475|CaJ7_0276|CaO19_6475	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	517383	518179	+	orf19.6474	517383	518179	1	517383	518179	517537	518040		orf19.13828|IPF20641.1|IPF12662.1|Contig4-2430_0006|orf6.2218|CA0973|CaJ7.0277|CaO19_6474|CaJ7_0277|CaO19.13828|CaO19.6474|IPF12662	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	519022	519700	-	orf19.6472	519022	519700	1	519700	519022	519625	519137	CYP1	orf19.13826|IPF20652.1|IPF17713.2|Contig4-1392_0002|Contig4-2430_0002|orf6.2216|CA0972|CaJ7.0279|CPR1|CaO19.13826|CaO19.6472|CaJ7_0279|CaO19_6472	Peptidyl-propyl cis-trans isomerase (PPIase); activity is cyclosporin A sensitive; soluble protein in hyphae; biofilm induced, macrophage-induced protein; downregulated upon treatment of biofilm with farnesol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	520524	521281	+	orf19.6470	520524	521281	1	520524	521281	520556	521113	AHP2	orf19.13824|IPF20642.1|IPF11428.2|Contig4-2613_0012|orf6.2214|CA0971|CaJ7.0281|AHP13|CaO19.6470|CaO19_6470|CaJ7_0281|CaO19.13824|IPF11428	Predicted ORF in Assemblies 19, 20 and 21; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	523720	526233	-	orf19.6469	523720	526233	1	526233	523720	526233	523720		IPF19294.1|Contig4-2630_0007|orf6.5992|orf6.412|orf6.413|CA0069|CA0070|CaJ7.0282|CaJ7.0283|orf19.6467|orf19.6468|IPF19295.3f	Predicted ORF in retrotransposon Tca11 with similarity to the Gag-Pol region of retrotransposons, which encodes nucleocapsid-like protein, reverse transcriptase, protease, and integrase [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	526552	527907	-	orf19.6465	526552	527907	1	527907	526552	527907	526552		IPF17991.2|Contig4-2630_0004|orf6.5994|CA3661|CaJ7.0286|CaO19.6465|IPF17991	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	528947	531177	+	orf19.6464	528947	531177	1	528947	531177	529027	530880		orf19.13823|IPF17021|IPF11430.2|IPF17021.2|Contig4-2613_0008|Contig4-2613_0010|orf6.2212|orf6.2213|orf6.5995|CA3662|CaJ7.0287|CaO19.6464|CaO19_6464|CaJ7_0287	Predicted ORF in Assemblies 19, 20 and 21; induced upon adherence to polystyrene; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	530754	532206	-	orf19.6463	530754	532206	1	532206	530754	532174	530897		orf19.13821|IPF18813.2|IPF11432.2|Contig4-2613_0007|orf6.2211|orf6.5996|YJR072|CA3663|CaJ7.0288|CaO19.6463|CaJ7_0288|CaO19_6463|IPF11432	Predicted ORF in Assemblies 19, 20 and 21; putative ortholog of S. cerevisiae Yjr072cp; possibly essential for growth (however, depletion mutant is viable) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	532217	533258	-	orf19.6462	532217	533258	2	533258|532884	532977|532217	533134	532257		orf19.13820|IPF20570.1|IPF20640.1|IPF11434.1|IPF11433.1|Contig4-2613_0005|orf6.5997|CaJ7.0289|orf19.6461.1|CA3664|IPF11434|IPF11433.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	533737	534624	+	orf19.6461	533737	534624	1	533737	534624	533827	534342		orf19.13819|IPF20643.1|IPF11435.1|Contig4-2613_0002|orf6.5998|CA3666|CaJ7.0290|CaO19.6461|COX20|CaO19.13819|CaO19_6461|CaJ7_0290|IPF11435	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	534858	538384	+	orf19.6460	534858	538384	1	534858	538384	534971	538246		orf19.13818|IPF20687.1|IPF16323.2|Contig4-2468_0013|orf6.5999|CA3667|CaJ7.0291|PEX1|CaO19.6460|CaO19_6460|CaJ7_0291|CaO19.13818|IPF16323	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	538211	539412	-	orf19.6459	538211	539412	1	539412	538211	539309	538389	DPP3	orf19.13817|IPF20617.1|IPF19996.1|Contig4-2468_0011|orf6.6000|CA3668|CaJ7.0292|CaO19.13817|CaJ7_0292|CaO19_6459|CaO19.6459	Protein similar to S. cerevisiae pyrophosphate phosphatase Dpp1p; required for farnesol biosynthesis; downregulated in response to 17-beta-estradiol, ethynyl estradiol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	539779	541228	+	orf19.6458.1	539779	541228	2	539779|540539	540456|541228	540454	540928		IPF20676.1|IPF19997.1|CA3669|CaJ7.s010|CaJ7_s010|IPF19997	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	541126	543740	-	orf19.6457	541126	543740	1	543740	541126	543676	542126		orf19.13815|IPF20578.1|IPF13933.1|Contig4-2468_0005|orf6.6002|CA3671|CaJ7.0294|CaO19.13815|CaO19.6457|CaO19_6457|CaJ7_0294|IPF13933	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	541394	542185	+	orf19.6458	541394	542185	1	541394	542185	541394	542185		orf19.13816|IPF20623.1|IPF13934.2|Contig4-2468_0006|orf6.6001|CA3670|CaJ7.0293|CaJ7_0293|CaO19_6458|CaO19.6458|IPF13934	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	544417	544975	-	ntar_1111	544417	544975	1	544975	544417	544671	544417			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	545649	547637	+	orf19.6456	545649	547637	1	545649	547637	545768	547444		orf19.13814|IPF20584.1|IPF13669.2|Contig4-2374_0008|Contig4-2669_0007|orf6.6003|CA3672|CaJ7.0295|CaJ7_0295|CaO19_6456|CaO19.6456|CaO19.13814|IPF13669	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	547533	548419	-	orf19.6455	547533	548419	1	548419	547533	548338	547670		orf19.13813|IPF20636.1|IPF13667.2|Contig4-2374_0007|orf6.6004|CA3673|CaJ7.0296|CaO19.6455|CaO19_6455|CaJ7_0296|CaO19.13813|IPF13667	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	548505	552591	+	orf19.6453	548505	552591	1	548505	552591	548612	552553		orf19.11187|orf19.13811|orf19.13812|IPF18687.1|IPF19531.1|IPF19530.1|IPF18311.1|Contig4-2374_0003|Contig4-2374_0004|orf6.2874|orf6.6006|orf6.6005|CA3675|CA3674|CaJ7.0297|CaJ7.0298|orf19.3703|orf19.6454|IPF19529.3f|IPF19529.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	552468	553114	-	orf19.6452	552468	553114	1	553114	552468	553012	552638	RBP1	orf19.11186|orf19.13810|IPF13665.1|IPF20677.1|IPF8077.2|Contig4-2374_0002|orf6.2875|orf6.6007|CA3676|CaJ7.0299|orf19.3702|CaO19_6452|CaJ7_0299|CaO19.6452|RBP12|CaO19.13810	Peptidyl-prolyl cis-trans isomerase; rapamycin-binding protein; homozygous null mutation confers rapamycin resistance; regulated by Gcn4p; macrophage-induced protein; repressed in response to 3-AT; functional homolog of S. cerevisiae Rbp1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	554244	558944	-	orf19.2372	554244	558944	1	558944	554244	558944	554244		orf19.9908|IPF24953.1|IPF29132.1|Contig4-2898_0014|orf6.4027|orf6.4770|orf6.6008|CaO19.2372|POL99|CaO19.9908	Putative Pol protein of retrotransposon Tca2; separated by a stop codon from Gag protein orf19.2371; both likely translated as single polyprotein that includes nucleocapsid-like protein (Gag), reverse transcriptase, protease, and integrase [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	558970	559928	-	orf19.2371	558970	559928	1	559928	558970	559928	558975		orf19.9907|IPF24948.1|IPF29129.1|Contig4-2369_0001|orf6.4769|GAG1|CaO19.9907|CaO19.2371	Putative Gag protein of retrotransposon Tca2; separated by a stop codon from Pol protein orf19.2372; both likely translated as single polyprotein that includes nucleocapsid-like protein (Gag), reverse transcriptase, protease, and integrase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	560401	562697	+	orf19.3701	560401	562697	1	560401	562697	560586	562502		orf19.11185|IPF8075|IPF23571.1|IPF8075.2|Contig4-2964_0008|orf6.2876|CA1396|CaJ7.0304|CaO19_3701|CaJ7_0304|CaO19.11185|CaO19.3701	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	562844	565135	+	orf19.3700	562844	565135	1	562844	565135	563076	564965	TOM70	orf19.11184|IPF23570.1|IPF8073.2|Contig4-2568_0001|orf6.2877|CA1397|CaJ7.0305|TOM71|CaO19.3700|CaO19.11184|CaO19_3700|CaJ7_0305|TOM72	Protein described as mitochondrial import receptor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	565242	566519	+	orf19.3699	565242	566519	1	565242	566519	565324	566484	TEP1	orf19.11183|IPF23574.1|IPF19913.1|Contig4-2159_0001|Contig4-2159_0002|orf6.2878|CA1398|CaJ7.0306|CaO19.11183|CaO19.3699|CaJ7_0306|CaO19_3699|IPF19913	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to S. cerevisiae Tep1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	566519	567497	-	orf19.3698	566519	567497	1	567497	566519	567256	566576		orf19.11182|IPF23575.1|IPF8069.1|Contig4-2159_0003|orf6.2879|CA1399|CaJ7.0307|CaO19.11182|CaO19.3698|CaO19_3698|CaJ7_0307|IPF8069	Predicted ORF in Assemblies 19, 20 and 21; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	567982	571080	+	orf19.3697	567982	571080	1	567982	571080	568048	571029		orf19.11181|IPF23569.1|IPF8067.1|Contig4-2159_0009|orf6.2880|CA1400|CaJ7.0308|CaO19.3697|CaO19_3697|CaJ7_0308|CaO19.11181|IPF8067	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	571166	572086	+	orf19.3696	571166	572086	1	571166	572086	571215	571667	TOM22	orf19.11180|IPF18832.2|IPF8066.1|Contig4-1953_0001|orf6.2142|orf6.2881|CA1401|CaJ7.0309|CaO19.11180|CaO19.3696|CaO19_3696|CaJ7_0309	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	571793	573243	-	orf19.3695	571793	573243	1	573243	571793	573118	571910		orf19.11179|IPF23573.1|IPF8065.2|Contig4-1953_0003|Contig4-1953_0004|orf6.2143|orf6.2882|CA0932|CaJ7.0310|CaO19.3695|EPT1|CaO19_3695|CaJ7_0310	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	573138	573560	+	ntar_1112	573138	573560	1	573138	573560	573138	573353			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	574090	574348	+	ntar_1113	574090	574348	1	574090	574348					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	575028	575178	-	ntar_1114	575028	575178	1	575178	575028					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	585462	587000	+	orf19.5191	585462	587000	1	585462	587000	585462	587000	FGR6-1	orf19.12658|IPF22053.1|IPF20089.1|Contig4-1717_0001|orf6.3502|CA1833|CaJ7.0311|CaO19.12658|CaO19.5191|IFV3	Protein lacking an ortholog in S. cerevisiae; member of a family encoded by FGR6-related genes in the RB2 repeat sequence; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	590144	591202	-	ntar_1115	590144	591202	1	591202	590144					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	590363	590788	+	orf19.5190	590363	590788	1	590363	590788	590363	590788		orf19.12657|IPF22082.1|IPF17727.1|Contig4-1794_0007|Contig4-2965_0002|Contig4-3084_0003|orf6.3501|CA1832|CaJ7.0312|CaO19.12657|CaO19.5190|IPF17727	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	590826	591384	+	ntar_1116	590826	591384	1	590826	591384					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	591571	591779	+	ntar_1117	591571	591779	1	591571	591779					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	592266	592828	-	ntar_1118	592266	592828	1	592828	592266					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	593088	596351	+	orf19.5188	593088	596351	1	593088	596351	593140	596220	CHS1	orf19.12655|CHS1A|IPF22109.1|IPF6129.2|Contig4-2406_0005|Contig4-2406_0006|orf6.3499|CA1831|CaJ7.0315|CaJ7_0315|CaO19_5188|CaO19.5188|CaO19.12655	Chitin synthase; essential; required for primary septum synthesis in yeast-form cells and hyphae; one of multiple chitin synthases; enzymatically activated by proteolytic processing; complements defects of S. cerevisiae chs1 or chs2 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	596425	597979	+	orf19.5184	596425	597979	1	596425	597979	596459	597940		orf19.12651|orf19.12652|IPF22062.1|IPF22072.1|IPF17178.1|IPF17177.2|Contig4-2406_0001|Contig4-2406_0002|orf6.3495|orf6.3496|CA1829|CA1830|CaJ7.0317|orf19.5185|CaO19_5184|CaJ7_0317|IPF17177.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	597938	601154	-	orf19.5182	597938	601154	1	601154	597938	601113	597997	POL3	orf19.12649|orf19.12650|POLIII|orf6.546|orf6.3494|CA0107|CaJ7.0319|orf19.5183|CDC2	Large subunit of DNA polymerase III; partially complements defects of an S. cerevisiae cdc2 mutant; differing reports about periodic (G1/S) or non-periodic mRNA expression through cell cycle [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	601528	604918	+	orf19.5181	601528	604918	1	601528	604918	601548	604793	NIK1	orf19.12648|COS1|COS-1|IPF22104.1|IPF19235.2|orf6.547|orf6.6955|CA0108|CaJ7.0320|HIK1|CA4415|HIK1.3eoc|IPF11890.1|HIK1.5eoc|IPF19235.1	Histidine kinase involved in a two-component signaling pathway that regulates cell wall biosynthesis; required for wild-type virulence in mouse systemic infection but not for wild-type growth or drug sensitivity/resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	604653	604849	-	ntar_1119	604653	604849	1	604849	604653					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	604966	605135	-	ntar_1120	604966	605135	1	605135	604966					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	605347	606367	+	orf19.5180	605347	606367	1	605347	606367	605347	606078	PRX1	orf19.12647|IPF22066.1|IPF11888.1|YBL064|Contig4-2258_0001|orf6.6956|CA4416|CaJ7.0321|YBL64|CaO19.5180|CaO19.12647|CaJ7_0321|CaO19_5180|IPF11888	Protein described as a putative cysteine peroxidase; transcriptionally induced by interaction with macrophage; fluconazole induced; Fkh2p-downregulated; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr7	605443	605747	-	ntar_1121	605443	605747	1	605747	605443	605747	605487			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	606792	607186	-	ntar_1122	606792	607186	1	607186	606792	607186	606971			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	607195	607816	+	ntar_1123	607195	607816	1	607195	607816	607195	607365			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	607254	607931	-	ntar_1124	607254	607931	1	607931	607254	607732	607589			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	609378	609979	+	ntar_1125	609378	609979	1	609378	609979	609594	609791			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	609420	610811	-	orf19.5179	609420	610811	1	610811	609420	610811	609420	LIP5	orf19.12646|LIP2-3|IPF22057.1|IPF5395.2|Contig4-1845_0002|orf6.6957|CA4417|CaJ7.0322|CaJ7_0322|CaO19_5179|CaO19.12646|CaO19.5179	Secreted lipase, member of differentially expressed lipase gene family with possible roles in nutrition and acidic microenvironment; LIP5 and LIP8 expressed at all stages of mucosal and systemic infection; affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	610570	610903	+	ntar_1126	610570	610903	1	610570	610903	610570	610731			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	612057	613750	-	orf19.5178	612057	613750	1	613750	612057	613720	612167	ERG5	orf19.12645|IPF22052.1|IPF5398.1|Contig4-2348_0004|orf6.6958|CA4418|CaJ7.0323|CaO19.12645|CaO19.5178|CaO19_5178|CaJ7_0323	Putative C-22 sterol desaturase; fungal C-22 sterol desaturases are cytochrome P450 enzymes of ergosterol biosynthesis, catalyze formation of the C-22(23) double bond in the sterol side chain; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	614791	617191	+	orf19.5177	614791	617191	1	614791	617191	614850	616880		orf19.12644|IPF22043.1|IPF5401.2|Contig4-2348_0001|Contig4-2348_0002|orf6.6959|CA4419|CaJ7.0324|CaJ7_0324|CaO19_5177|LPF36|CaO19.5177|CaO19.12644|IFA6	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	617526	621151	-	orf19.5175	617526	621151	1	621151	617526	621061	617642		orf19.12642|IPF22097.1|IPF5404.2|Contig4-3092_0052|orf6.6961|CA4420|CaJ7.0325|CaO19.5175|SSM4|CaO19.12642|CaO19_5175|CaJ7_0325	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	621270	621899	-	orf19.5174	621270	621899	1	621899	621270	621841	621341	TAF19	orf19.12641|IPF22077.1|IPF5405.2|Contig4-3092_0047|orf6.6962|CA4421|CaJ7.0327|CaO19.12641|TAF13|CaO19.5174|CaJ7_0327|CaO19_5174	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	622142	623503	-	orf19.5172	622142	623503	1	623503	622142	623503	622142	LIP9	orf19.12639|orf19.12640|IPF22071.1|IPF22065.1|IPF5407.2|IPF5406.2|Contig4-3092_0045|orf6.6964|orf6.6963|CA4423|CA4422|CaJ7.0329|orf19.5173|LIP9.5f|LIP9.exon1	[NOT TRANSCRIBED?] Secreted lipase, member of a lipase gene family whose members are expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	624549	627536	-	orf19.5171	624549	627536	1	627536	624549	627319	624686	PMT1	orf19.12638|IPF22034.1|IPF5408.1|Contig4-3092_0043|orf6.6965|CA4424|CaJ7.0330|CaO19.12638|CaO19.5171|CaO19_5171|CaJ7_0330	Protein mannosyltransferase, required for virulence in mouse systemic infection and for adhesion to epithelial cells; has a role in hyphal growth and drug sensitivity; Als1p, Sec20p, Kre9p, Pir1p are substrates; one of 5 PMT family members [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	629342	632858	+	orf19.5170	629342	632858	1	629342	632858	629811	632771	ENA21	orf19.12637|IPF22107.1|IPF5411.2|ENA21.3|Contig4-3092_0037|orf6.6966|CA4425|CaJ7.0331|CaO19.5170|ENA2|CaO19.12637|CaJ7_0331|CaO19_5170|ENA21.3f	Predicted ORF similar to S. cerevisiae sodium transporters Ena1p and Ena5p; Gcn4p-regulated; flucytosine, amphotericin B, or ketoconazole-induced; osmotic stress-induced; overlaps orf19.5170.1, which is annotated as a blocked reading frame [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	633385	635333	+	orf19.5169	633385	635333	1	633385	635333	633447	635168		orf19.12636|IPF22048.1|IPF5587.2|Contig4-3092_0034|orf6.6967|CA4426|CaJ7.0332|CaO19.12636|AMD22|CaJ7_0332|CaO19_5169|AMD21|CaO19.5169	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	635134	636615	-	orf19.5168	635134	636615	1	636615	635134	636587	635283		orf19.12635|IPF22056.1|IPF5584.1|Contig4-3092_0033|orf6.6968|CA4427|CaJ7.0333|CaO19.5168|CaO19_5168|CaJ7_0333|CaO19.12635|IPF5584	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	636668	639113	-	orf19.5167	636668	639113	1	639113	636668	639065	636762	IFM1	orf19.12634|IPF22038.1|IPF5581.2|Contig4-3092_0031|Contig4-3092_0032|orf6.6969|CA4428|CaJ7.0334|CaO19.5167|CaJ7_0334|CaO19_5167	Transcription is regulated by Nrg1p, Mig1p, and Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	639180	640801	-	orf19.5166	639180	640801	1	640801	639180	640747	639227	DBF4	orf19.12633|IPF22054.1|IPF5578.1|Contig4-3092_0030|orf6.6970|CA4429|CaJ7.0336|CaJ7_0336|CaO19_5166|CaO19.5166|CaO19.12633	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed; cell-cycle regulated periodic mRNA expression; S. cerevisiae ortholog is not cell-cycle regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	641077	642539	-	orf19.5165	641077	642539	1	642539	641077	642434	641307		orf19.12632|IPF22060.1|IPF5577.2|Contig4-3092_0029|orf6.6971|CA4430|CaJ7.0337|CaO19.12632|CaO19_5165|CaJ7_0337|CaO19.5165|IPF5577	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	642599	644678	+	orf19.5164	642599	644678	1	642599	644678	642621	644375	ECM39	orf19.12631|orf6.6972|IPF22045.1|IPF5575.2|Contig4-3092_0028|CA4431|CaJ7.0338|CaO19.5164|CaO19_5164|CaJ7_0338|CaO19.12631	Putative mannosyltransferase; similar to S. cerevisiae Ecm39p, which has a role in Calcofluor white resistance; predicted Kex2p substrate; has HKEXRF motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	644350	647805	-	orf19.5163	644350	647805	1	647805	644350	647745	644383	SFI1	orf19.12630|IPF22102.1|IPF5574.2|Contig4-3092_0026|Contig4-3092_0027|orf6.6973|CA4432|CaJ7.0339|CaO19_5163|CaJ7_0339|CaO19.12630|CaO19.5163|IPF5574	Predicted ORF in Assemblies 19, 20 and 21; essential for growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	647887	652166	+	orf19.5162	647887	652166	1	647887	652166	648125	652087	BCK1	orf19.12629|IPF22091.1|IPF5572.2|Contig4-3092_0024|orf6.6974|CA4433|CaJ7.0340|CaO19.12629|CaO19.5162|CaO19_5162|CaJ7_0340	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Bck1p MAP kinase kinase kinase of cell integrity pathway [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	652068	652652	-	orf19.5161	652068	652652	1	652652	652068	652621	652139		orf19.12628|IPF22081.1|IPF5569.2|Contig4-3092_0022|orf6.6975|CA4434|CaJ7.0341|MRPL49|CaO19.5161|CaO19_5161|CaJ7_0341|CaO19.12628	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	653008	656460	+	orf19.5160	653008	656460	1	653008	656460	653625	656210		orf19.12627|IPF22035.1|IPF5567.2|Contig4-3092_0018|orf6.6976|YJL098|CA4435|CaJ7.0342|CaJ7_0342|CaO19_5160|SAP185|CaO19.12627|CaO19.5160|IPF5567|SAP190	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Sap185p and Sap190p, which are involved in regulation of the cell-cycle phosphatase Sit4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	656200	657540	-	orf19.5159	656200	657540	1	657540	656200	657444	656410		orf19.12626|IPF22061.1|IPF13868.2|Contig4-3092_0015|orf6.6977|YNL191|CA4436|CaJ7.0343|CaO19.5159|CaO19.12626|IPF13868	Predicted ORF in Assemblies 19, 20 and 21; similarity to S. cerevisiae Ynl191p; similar to amidophosphoribosyl transferases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	657807	658725	+	orf19.5158	657807	658725	1	657807	658725	658048	658566		orf19.12625|IPF22074.1|IPF13867.2|Contig4-3092_0013|orf6.6978|YKR049|CA4437|CaJ7.0344|CaO19_5158|CaJ7_0344|CaO19.12625|CaO19.5158|IPF13867	Protein with slight similarity to a human gene associated with colon cancer and to orf19.5158; regulated by Gcn4p, Cyr1p; induced in response to amino acid starvation (3-aminotriazole treatment); macrophage-induced protein, macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	658216	658477	-	ntar_1127	658216	658477	1	658477	658216					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	658743	659399	+	orf19.5157	658743	659399	1	658743	659399	658783	659394		orf19.12624|IPF22068.1|IPF13866.1|Contig4-3092_0012|orf6.6979|YJL097A|CA4438|CaJ7.0345|CaO19.12624|TPL2|CaO19.5157|CaJ7_0345|CaO19_5157|IPF13866	Predicted ORF in Assemblies 19, 20 and 21; hsix putative membrane-spanning regions; similar to S. cerevisiae Yjl097p, which is required for growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	658911	659374	-	ntar_1128	658911	659374	1	659374	658911	659042	658911			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	659418	660355	+	orf19.5156	659418	660355	1	659418	660355	659536	660138		orf19.12623|IPF22075.1|IPF13865.1|Contig4-3092_0011|orf6.6980|YJL097B|CA4439|CaJ7.0346|CaJ7_0346|CaO19_5156|CaO19.12623|TPL1|CaO19.5156|IPF13865	Predicted ORF in Assemblies 19, 20 and 21; has six putative membrane-spanning regions; similar to S. cerevisiae Yjl097p, which is required for growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	659953	662574	-	orf19.5155	659953	662574	1	662574	659953	662425	660140	CHS6	orf19.12622|IPF22047.1|IPF13864.2|Contig4-3092_0010|orf6.5943|orf6.6981|CA4440|CaJ7.0348|CaO19.5155|CaJ7_0348|CaO19_5155|IPF13864|IPF13864.1	Protein with tetratricopeptide repeats (TPRs); similar to S. cerevisiae Chs6p, which has role in localization of chitin synthase; decreased mRNA abundance observed in cyr1 homozygous mutant hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	662578	667941	-	orf19.5148	662578	667941	1	667941	662578	667810	662738	CYR1	orf19.12615|orf19.12617|CDC35|IPF12336.2|IPF12339.2|IPF12335.3|IPF28127.1|IPF28142.1|Contig4-3092_0006|Contig4-3092_0007|orf6.481|orf6.5946|orf6.5948|CA6295|CA6309|CA3625|CaJ7.0349|orf19.5150|orf19.5151|CYR1.5f	Adenylyl cyclase; mutant lacks cAMP; required for mucosal or systemic infection in mice; hyphal growth defect of mutant is rescued by exogenous cAMP; role in macrophage sensitivity, apoptosis; in pathway downstream of Ras1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	669534	671638	+	orf19.5147	669534	671638	2	669534|669730	669654|671638	669600	671519		orf19.12613|IPF18318.1|IPF12332.2|Contig4-2330_0005|Contig4-3092_0001|orf6.5950|CA3627|CaJ7.0356|CaJ7_0356|CaO19_5147|CaO19.5147|IPF18318	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	671539	672892	-	orf19.5145	671539	672892	1	672892	671539	672892	671645	SSP96	orf19.12611|IPF18317.1|IPF8125.1|Contig4-2330_0004|orf6.258|orf6.5952|orf6.5953|CA3629|CaJ7.0357|CaJ7_0357|CaO19_5145|CaO19.5145|IPF18316|CA3628|IPF18316.3f|IPF18316.5f|IPF18316.1	Predicted ORF in Assemblies 19, 20 and 21; has monooxygenase-like flavin-binding region; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	675368	676381	+	orf19.5144	675368	676381	1	675368	676381	675515	676195	PGA28	orf19.12609|orf6.311|IPF8129.2|IPF19345.2|Contig4-2330_0001|orf6.5954|CA3630|CaJ7.0358|CaJ7_0358|CaO19_5144|CaO19.5144|IPF8129	Protein similar to S. cerevisiae Wsc2p, which has roles in stress- and cell-wall-related processes; predicted Kex2p substrate; putative GPI-anchored protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	676798	678298	+	orf19.5143	676798	678298	1	676798	678298	676831	678033		orf19.12608|IPF8130.2|IPF19344.2|orf6.312|orf6.5955|CA3631|CaJ7.0359|CaJ7_0359|CaO19_5143|CaO19.5143|TIM54	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	677923	678707	-	orf19.5142	677923	678707	1	678707	677923	678680	678102	DFR1	orf19.12607|IPF22076.1|IPF8131.1|Contig4-2489_0001|orf6.5956|CA3632|DHFR|CaJ7.0360|CaO19.5142|CaO19.12607|CaJ7_0360|CaO19_5142	Dihydrofolate reductase; trimethoprim resistant; DHFR reduces 7,8-dihydrofolate to 5,4,7,8-tetrahydrofolate; binds NADPH; target of drugs that selectively inhibit the fungal enzyme rather than the human enzyme [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	679378	681588	+	orf19.5141	679378	681588	1	679378	681588	679378	681549		orf19.12606|IPF22041.1|IPF8136.2|Contig4-2489_0003|orf6.5957|CA3633|CaJ7.0361|CaO19.12606|LPF35|CaO19.5141|CaO19_5141|CaJ7_0361|IFA19	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	682335	684422	+	orf19.5140	682335	684422	1	682335	684422	682335	684422		orf19.12605|IPF22042.1|IPF8138.2|Contig4-2489_0004|orf6.5958|CA3634|CaJ7.0362|LPF34|CaO19.5140|CaJ7_0362|CaO19_5140|CaO19.12605|IFA25	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr7	685062	687520	+	orf19.5139	685062	687520	1	685062	687520	685158	687395		orf19.12604|IPF22040.1|IPF8140.2|orf6.5959|CA3635|CaJ7.0364|CaO19_5139|CaJ7_0364|LPF33|CaO19.5139|CaO19.12604|IFA20	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	687901	690466	+	orf19.5138	687901	690466	1	687901	690466	687957	690230	IFA21	orf19.12603|IPF16529.2|IPF28124.1|Contig4-2447_0019|orf6.5960|CA3636|CaJ7.0365|CaJ7_0365|CaO19_5138|CaO19.5138|LPF32	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	690984	692202	-	orf19.5137.1	690984	692202	3	692202|692063|691850	692202|692015|690984	692061	691430	HHO1	IPF22037.1|IPF19995.1|Contig4-2447_0016|CaJ7.0366	Protein described at histone H1; farnesol regulated [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	692252	692629	-	orf19.5137	692252	692629	1	692629	692252	692629	692252		orf19.12602|IPF22078.1|IPF9256.2|Contig4-2447_0012|orf6.5961|CaJ7.0367|CaO19.12602|CaO19_5137|CaJ7_0367|CaO19.5137	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	692646	693341	+	ntar_1129	692646	693341	1	692646	693341					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	693219	694526	-	orf19.5136	693219	694526	1	694526	693219	694157	693471		orf19.12601|IPF22064.1|IPF9255.2|Contig4-2447_0008|orf6.5962|CA3637|CaJ7.0368|CaO19_5136|CaJ7_0368|CaO19.12601|CaO19.5136|IPF9255	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	694546	694921	+	ntar_1130	694546	694921	1	694546	694921					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	694847	695470	-	ntar_1131	694847	695470	1	695470	694847					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	695616	696915	+	orf19.5134	695616	696915	1	695616	696915	695648	696805		orf19.12599|IPF22059.1|IPF9252.2|Contig4-2447_0001|orf6.5964|CA3638|CaJ7.0370|CaO19.12599|CaO19.5134|CaJ7_0370|CaO19_5134|IPF9252	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	696818	700360	-	orf19.5133	696818	700360	1	700360	696818	700360	697043		ZCF29|orf19.12598|IPF22103.1|IPF9251.2|orf6.5965|CA3639|CaJ7.0371|CaO19_5133|CaJ7_0371|CaO19.5133|CaO19.12598|IPF9251	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	700597	700977	-	orf19.5132	700597	700977	1	700977	700597	700977	700597		orf19.12597|IPF22088.1|IPF28134.1|orf6.5966|CaJ7.0372|CaO19.5132|CaJ7_0372|CaO19_5132|CaO19.12597	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	701476	702637	-	ntar_1132	701476	702637	1	702637	701476					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	702953	705597	+	orf19.5131	702953	705597	1	702953	705597	703314	705476		orf19.12596|IPF9245.3|IPF16320.2|Contig4-2185_0005|orf6.3400|orf6.5967|CA1754|CaJ7.0373|CaO19.12596|CaO19_5131|CaJ7_0373|CaO19.5131|IPF16320	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	705474	707402	-	orf19.5130	705474	707402	1	707402	705474	707309	705627	PDI1	orf19.12595|IPF22050.1|IPF16217.2|Contig4-2185_0004|orf6.3401|CA1755|CaJ7.0374|CaJ7_0374|CaO19_5130|CaO19.5130|CaO19.12595	Protein described as protein disulfide-isomerase; antigenic in human; soluble protein in hyphae; transcription is induced upon filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	707959	709317	-	orf19.5129	707959	709317	1	709317	707959	709164	708478		orf19.12594|IPF22063.1|IPF14562.1|Contig4-2185_0008|orf6.3402|CA1756|CaJ7.0375|PMP4|CaO19.12594|CaO19_5129|CaJ7_0375|CaO19.5129|IPF14562	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	710455	713114	+	orf19.5126	710455	713114	1	710455	713114	710719	711912		orf19.12591|orf19.12593|IPF22069.1|IPF14561.3|IPF14556.2|IPF14559.1|Contig4-1627_0002|Contig4-1627_0005|orf6.37|orf6.3405|orf6.3403|CA1758|CA1757|CaJ7.0377|CaJ7.0378|orf19.5128|IPF14559.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	713372	715230	-	orf19.5125	713372	715230	1	715230	713372	715230	713515		orf19.12590|IPF22049.1|IPF14744.2|Contig4-2402_0003|orf6.3406|CA1759|CaJ7.0379|CaO19_5125|CaJ7_0379|CaO19.12590|CaO19.5125|IPF14744	Predicted ORF in Assemblies 19, 20 and 21; expression regulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	716449	718420	-	orf19.5124	716449	718420	1	718420	716449	718154	716736	RBR3	orf19.12589|orf19.8926|orf6.1159|IFF1|IPF25998.1|IPF16164.3|IPF16302.3|IPF17914.3|Contig4-2402_0004|orf6.3408|orf6.3407|CA0344|CA1760|CaJ7.0381|orf19.5123|orf19.1346|CaO19.5124|IPF17914.3eoc|IPF17914.2	Cell wall protein; expression is repressed by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	718151	719185	-	ntar_1133	718151	719185	1	719185	718151	719185	718151			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	718686	720815	-	ntar_1134	718686	720815	1	720815	718686	720815	718686			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	720467	721847	+	ntar_1135	720467	721847	1	720467	721847					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	722685	722907	+	ntar_1136	722685	722907	1	722685	722907					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	727350	729316	+	ntar_1137	727350	729316	1	727350	729316	727667	727795			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	727502	728884	-	orf19.1345	727502	728884	1	728884	727502	728884	727502	LIP8	orf19.8925|orf6.2643|IPF7914.2|IPF29487.1|Contig4-3068_0044|CA1241|CaJ7.0382|CaO19_1345|CaJ7_0382|CaO19.1345	Secreted lipase, member of a differentially expressed lipase gene family with possible roles in nutrition and/or in creating an acidic microenvironment; LIP5 and LIP8 are expressed at all stages of both mucosal and systemic infection [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	729045	730623	-	ntar_1138	729045	730623	1	730623	729045	730211	730014			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	730787	731111	-	ntar_1139	730787	731111	1	731111	730787	731111	730923			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	730977	732486	+	orf19.1344	730977	732486	1	730977	732486	731671	732486		orf19.8924|IPF26000.1|IPF19908.1|Contig4-3068_0038|Contig4-3068_0040|orf6.2644|CA1242|CaJ7.0383|CaO19.1344|CaO19.8924|CaJ7_0383|CaO19_1344|IPF19908	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-induced; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=C scenario_last_exon=C]
Ca21chr7	732615	735847	-	orf19.1343	732615	735847	1	735847	732615	735818	732660		orf19.8923|IPF7922.2|IPF17576.2|Contig4-3068_0036|orf6.1345|orf6.2645|CA1243|CaJ7.0384|CaJ7_0384|CaO19_1343|SIN4|CaO19.1343|IPF7922	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	736027	737619	-	orf19.1342	736027	737619	1	737619	736027	737569	736088	SHM1	orf19.8922|orf6.1344|IPF19725.2|IPF7924.2|Contig4-3068_0034|orf6.2646|CA0433|CaJ7.0385|CaJ7_0385|CaO19_1342|CaO19.1342	Mitochondrial serine hydroxymethyltransferase; complements the glycine auxotrophy of an S. cerevisiae shm1 null shm2 null gly1-1 triple mutant; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	737647	738804	-	orf19.1341	737647	738804	1	738804	737647	738804	737848	PRR2	orf19.8921|IPF25999.1|IPF7926.1|Contig4-3068_0031|orf6.1343|CA0432|CaJ7.0386|CaO19.1341|CaJ7_0386|CaO19_1341|IPF7926	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	738203	738788	+	ntar_1140	738203	738788	1	738203	738788					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	738895	739940	-	orf19.1340	738895	739940	1	739940	738895	739871	738942		orf19.8920|IPF18538.2|IPF7927.1|Contig4-3068_0030|orf6.1342|CA0431|CaJ7.0387|CaO19_1340|CaJ7_0387|CaO19.1340|IPF7927	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	740596	742506	+	orf19.1339	740596	742506	1	740596	742506	740688	742316	CPY1	orf19.8919|PRC1|IPF18540.1|IPF7928.2|Contig4-3068_0029|orf6.1341|orf6.3892|CA0430|CaJ7.0388|CaO19.1339|CaO19_1339|CaJ7_0388|CA2122|CPY1.3f	Carboxypeptidase Y; transcriptionally regulated at yeast-hyphal transition or macrophage response; upregulated in the presence of human neutrophils; regulated by Gcn2p and Gcn4p; putative N-glycosylation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	742328	743704	-	orf19.1338	742328	743704	1	743704	742328	743668	742574		orf19.8918|IPF7930.1|IPF19386.2|Contig4-3068_0028|orf6.3891|CA2121|CaJ7.0389|CaO19_1338|CaJ7_0389|CaO19.8918|CaO19.1338|IPF7930	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	744260	744964	+	orf19.1336.2	744260	744964	1	744260	744964	744395	744694		IPF26004.1|IPF8016.2|CA0034|IPF8016	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	744757	745678	-	orf19.1336	744757	745678	1	745678	744757	745555	744935	PUP3	orf19.8916|IPF8017.2|IPF8018.1|Contig4-3068_0025|orf6.224|orf6.3889|CA2120|CaJ7.0390|CaO19.1336|CaJ7_0390|CaO19_1336	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	745807	749072	-	orf19.1335	745807	749072	1	749072	745807	749033	745845		orf19.8915|IPF8020.2|IPF29491.1|Contig4-3068_0020|Contig4-3068_0022|Contig4-3068_0024|orf6.223|orf6.3888|CA2119|CaJ7.0392|MTR4|CaO19.1335|CaO19_1335|CaJ7_0392|CaO19.8915	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	749240	752127	-	orf19.1334	749240	752127	1	752127	749240	751269	749305		orf19.8914|IPF25991.1|IPF8024.2|Contig4-3068_0019|orf6.3887|CA2118|CaJ7.0393|CaO19.8914|CaO19.1334|CaJ7_0393|CaO19_1334|IPF8024	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	753719	755842	-	orf19.1333	753719	755842	1	755842	753719	755677	753848	SNG3	orf19.8913|IPF25995.1|IPF8025.2|Contig4-3068_0011|orf6.3886|CA2117|CaJ7.0394|CaO19_1333|CaJ7_0394|CaO19.1333|CaO19.8913	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	756530	758560	+	orf19.1332	756530	758560	1	756530	758560	756801	758462	SNG4	orf19.8912|IPF25997.1|IPF8028.1|Contig4-3068_0008|orf6.3885|CA2116|CaJ7.0395|CaO19.8912|CaJ7_0395|CaO19_1332|CaO19.1332	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress; shows Mob2p-dependent hyphal regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	758285	760097	-	orf19.1331	758285	760097	1	760097	758285	759975	758557	HSM3	orf19.8911|IPF8030.1|IPF19088.2|Contig4-3068_0006|orf6.3884|orf6.958|CA2115|CaJ7.0396|CaO19_1331|CaJ7_0396|CaO19.1331|CaO19.8911|IPF8030	Protein not essential for viability; similar to S. cerevisiae Hsm3p, which may be involved in DNA mismatch repair [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	762247	764168	+	orf19.1330	762247	764168	1	762247	764168	762348	764168		orf19.8910|IPF25994.1|IPF15703.1|orf6.4357|orf6.959|orf6.6812|CA0240|CaJ7.0397|CaO19.8910|LPF15|CaO19.1330|IFB3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr7	765240	766051	+	orf19.6704	765240	766051	1	765240	766051	765240	765917		orf19.8909|orf19.13996|IPF26001.1|IPF15704.2|IPF20486.1|IPF6649.2|Contig4-1873_0005|orf6.960|orf6.6813|CA4304|CaJ7.0398|orf19.1329|LPF44|CaO19.6704|CaO19.13996|IPF6649	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr7	770415	774330	+	orf19.6705	770415	774330	1	770415	774330	771047	774184		orf19.13997|IPF20496.1|IPF6654.2|Contig4-2413_0004|orf6.6814|YBL60|CA4305|CaJ7.0399|CaO19.13997|CaO19_6705|CaJ7_0399|CaO19.6705|IPF6654	Putative guanyl nucleotide exchange factor with Sec7 domain, required for normal filamentous growth; transcriptionally regulated upon yeast-hyphal switch; filament induced; regulated by Nrg1p, Tup1p, Mob2p; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	774791	777460	+	orf19.6706	774791	777460	1	774791	777460	774942	777272	GYP7	orf19.13998|IPF20471.1|IPF6656.2|Contig4-2413_0003|orf6.6815|CA4306|CaJ7.0400|CaO19.6706|CaO19_6706|CaJ7_0400|CaO19.13998	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Gyp7p (GTPase-activating protein for Ypt1p); caspofungin-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	776028	777256	-	ntar_1141	776028	777256	1	777256	776028	776527	776276			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	777537	779077	+	orf19.6707	777537	779077	1	777537	779077	777712	778878		orf19.13975|orf19.13999|IPF17904.3|IPF20482.1|IPF20013.1|Contig4-1469_0004|orf6.6792|orf6.6816|CA4285|CA4307|CaJ7.0401|orf19.6683|CaO19.13999|CaO19.6707|IPF20013	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	779616	780686	+	orf19.6684	779616	780686	1	779616	780686	779738	780472	PNC1	orf19.13976|orf19.14000|IPF20488.1|IPF20011.1|IPF20491.1|IPF6660.2|IPF6660|Contig4-3088_0002|orf6.6793|orf6.6817|CA4286|CA4308|CaJ7.0402|orf19.6708|IPF20011.5f	Putative nicotinamidase, involved in NAD salvage pathway; decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	780397	781351	-	orf19.6685	780397	781351	1	781351	780397	781300	780500	ISY1	orf19.13977|IPF20485.1|IPF6662.2|Contig4-3088_0005|orf6.6794|CA4288|CaJ7.0403|CaO19_6685|CaJ7_0403|CaO19.6685|CaO19.13977|IPF6662	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	781498	783944	-	orf19.6686	781498	783944	1	783944	781498	783847	781595	ENP2	orf19.13978|IPF2618.3|IPF6665.2|Contig4-3088_0006|Contig4-3088_0008|orf6.383|orf6.6795|CA4289|CaJ7.0404|CaO19.6686|CaJ7_0404|CaO19_6686|IPF6665	Predicted ORF in Assemblies 19, 20 and 21; essential; S. cerevisiae ortholog is essential; heterozygous mutation confers resistance to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	784229	786232	-	orf19.6687	784229	786232	1	786232	784229	786232	784229		orf19.13979|IPF6666.3|IPF2617.1|Contig4-3088_0010|orf6.382|orf6.6796|CA4290|CaJ7.0405|CaO19_6687|CaJ7_0405|CaO19.6687|IPF2617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	789512	790492	+	orf19.6688	789512	790492	1	789512	790492	789512	790492		orf19.13980|IPF20483.1|IPF2615.1|IPF2615|Contig4-3088_0015|orf6.6797|CA4291|CaJ7.0406|CaJ7_0406|CaO19_6688|CaO19.13980|CaO19.6688	Decreased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr7	792029	793747	+	orf19.6689	792029	793747	1	792029	793747	792083	793489	ARG4	orf19.13981|orf6.6798|ARG57|IPF20481.1|IPF2612.2|Contig4-3088_0016|CA4292|CaJ7.0407|CaJ7_0407|CaO19_6689|CaO19.13981|CaO19.6689	Argininosuccinate lyase, catalyzes the final step in the arginine biosynthesis pathway; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	793510	796160	-	orf19.6690	793510	796160	1	796160	793510	795818	793740		orf19.13982|IPF20473.1|IPF2611.1|orf6.6799|CA4293|CaJ7.0408|CaO19.6690|LPF42|CaJ7_0408|CaO19_6690|CaO19.13982|IFA8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	796730	798896	-	orf19.6691	796730	798896	1	798896	796730	798693	796834		orf19.13983|IPF20476.1|IPF2610.2|Contig4-3088_0020|orf6.6800|CA4294|CaJ7.0409|ERC1|CaO19_6691|CaJ7_0409|MTE1|CaO19.13983|CaO19.6691	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	800227	802939	+	orf19.6692	800227	802939	1	800227	802939	800431	802701	MNN7	orf19.13984|IPF20472.1|IPF2606.1|Contig4-3088_0024|orf6.6801|CA4295|CaJ7.0410|MNN26|CaO19.6692|CaO19_6692|CaJ7_0410|CaO19.13984	Protein described as mannosyltransferase; identified in detergent-resistant membrane fraction (possible lipid raft component); predicted N-terminal acetylation and transmembrane helix [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	802889	806381	-	orf19.6693	802889	806381	1	806381	802889	806381	802950		orf19.13985|IPF20494.1|IPF2605.1|Contig4-3088_0028|orf6.6802|CA4296|CaJ7.0411|CaO19.13985|CaJ7_0411|CaO19_6693|CaO19.6693|IPF2605	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	806621	808726	-	orf19.6694	806621	808726	1	808726	806621	808696	806717		orf19.13986|IPF20475.1|IPF2603.1|Contig4-3088_0029|orf6.6803|CA4297|CaJ7.0414|CaO19_6694|CaJ7_0414|CaO19.6694|CaO19.13986|IPF2603	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	808894	809549	-	orf19.6696	808894	809549	2	809549|809152	809253|808894	809485	809122	TIM9	orf19.13988|IPF20492.1|IPF2599.1|Contig4-3088_0031|orf6.6805|CA4298|CaJ7.0415|CaO19.13988|CaJ7_0415|CaO19_6696|CaO19.6696	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	809701	811283	-	orf19.6698	809701	811283	1	811283	809701	811253	809784		orf19.13990|IPF20480.1|IPF2598.1|Contig4-3088_0032|orf6.6807|CA4299|CaJ7.0416|CaO19.13990|CaJ7_0416|CaO19_6698|CaO19.6698|IPF2598	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	811390	812654	+	orf19.6699	811390	812654	1	811390	812654	811518	812474		orf19.13991|IPF20484.1|IPF2596.1|Contig4-3088_0033|orf6.6808|CA4300|CaJ7.0418|CaO19.13991|HIS2|CaO19_6699|CaJ7_0418|CaO19.6699	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	812070	812761	-	ntar_1142	812070	812761	1	812761	812070	812732	812502			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	812869	815073	-	orf19.6701	812869	815073	1	815073	812869	815015	812940		orf19.13993|IPF20474.1|IPF2593.2|Contig4-3088_0036|orf6.6810|CA4301|CaJ7.0419|CaO19.6701|CaO19.13993|CaO19_6701|CaJ7_0419|IPF2593	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	815411	817198	+	orf19.6702	815411	817198	1	815411	817198	815457	817115	DED81	orf19.13994|IPF20478.1|IPF2591.1|Contig4-3088_0039|orf6.6811|CA4302|CaJ7.0421|CaO19.6702|CaO19.13994|CaJ7_0421|CaO19_6702	Putative tRNA-Asn synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	817541	819442	+	orf19.6703	817541	819442	1	817541	819442	817601	819442		orf19.13995|IPF6648.2|IPF20477.1|IPF2590.2|Contig4-2958_0007|Contig4-3068_0003|Contig4-3068_0004|Contig4-3088_0040|orf6.6812|CA2451|CA4303|CaJ7.0422|orf19.5509|CaJ7_0422|CaO19_6703|CaO19.6703|LPF43|CaO19.13995|IFB1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr7	820514	821828	+	orf19.5508	820514	821828	1	820514	821828	820514	821224		IPF2589.1|Contig4-3088_0044|orf6.4356|CA2450|CaJ7.0423|CaO19.5508|LPF37|CaJ7_0423|CaO19_5508|IPF2589	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr7	822480	824119	-	orf19.5507	822480	824119	1	824119	822480	824034	822607	ENP1	IPF2587.2|Contig4-3088_0045|orf6.4355|CA2449|CaJ7.0424|CaO19.5507|CaJ7_0424|CaO19_5507	Protein similar to S. cerevisiae Enp1p; transposon mutation affects filamentous growth; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	824324	827744	-	orf19.5506	824324	827744	1	827744	824324	827626	824324	PLC1	IPF2586.2|orf6.4354|CA2448|CaJ7.0425|CaJ7_0425|CaO19_5506|CaO19.5506	Phosphoinositide-specific phospholipase C (PI-PLC), delta-form; essential; roles in stress resistance, hyphal growth; upregulated in biofilm; predicted N-linked glycosylation; lacks conserved EF-hand domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr7	827887	830013	-	orf19.5505	827887	830013	1	830013	827887	829907	828024	HIS7	IPF2583.2|Contig4-2718_0002|Contig4-2718_0003|orf6.4353|CA2447|CaJ7.0427|CaO19.5505|CaO19_5505|CaJ7_0427	Putative imidazole glycerol phosphate synthase; histidine biosynthesis; no human/murine homolog; transcription induced by histidine starvation; regulated by Gcn2p and Gcn4p; detected by mass spec in exponential/stationary phase culture [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	830004	830494	+	ntar_1143	830004	830494	1	830004	830494					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	830212	833295	-	orf19.5504	830212	833295	1	833295	830212	833152	830285		IPF2582.2|Contig4-2718_0005|orf6.4352|CA2446|CaJ7.0428|CaO19.5504|CaO19_5504|CaJ7_0428|IPF2582	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	830976	831304	+	ntar_1144	830976	831304	1	830976	831304					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	835020	835349	-	orf19.5503	835020	835349	1	835349	835020	835349	835020		IPF13885.1|Contig4-2718_0008|orf6.4351|CA2445|CaJ7.0429|CaO19.5503|CaO19_5503|CaJ7_0429|IPF13885	[NOT TRANSCRIBED?] Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	836209	837031	+	orf19.5502	836209	837031	1	836209	837031	836280	837017		IPF13883.1|Contig4-2718_0010|orf6.4350|CA2444|CaJ7.0431|CaO19_5502|CaJ7_0431|CaO19.5502|IPF13883	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	836323	837880	-	orf19.5501	836323	837880	1	837880	836323	837811	837047	YAF9	IPF13882.1|Contig4-2718_0011|orf6.4349|CA2443|CaJ7.0432|CaJ7_0432|CaO19_5501|CaO19.5501	Subunit of the NuA4 histone acetyltransferase complex; transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	838099	839678	-	orf19.7204	838099	839678	1	839678	838099	839595	838234		IPF2130.2|Contig4-3097_0059|orf6.8104|CA5330|CaJ7.0433|CaJ7_0433|CaO19_7204|NPD1|CaO19.7204|IPF2130	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	840015	840720	+	ntar_1420	840015	840720	2	840015|840229	840114|840720					 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	840829	842149	+	orf19.7203	840829	842149	1	840829	842149	840872	842041		IPF2131.2|Contig4-3097_0058|orf6.8103|CA5329|CaJ7.0434|CaO19_7203|CaJ7_0434|MRP7|CaO19.7203	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	842222	843247	+	orf19.7202	842222	843247	1	842222	843247	842364	842978		IPF2132.2|Contig4-3097_0056|Contig4-3097_0057|orf6.8102|CA5328|CaJ7.0435|CaO19_7202|CaJ7_0435|RER1|CaO19.7202	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	843430	846899	+	orf19.7201	843430	846899	1	843430	846899	843541	846732	SLA2	IPF2136.1|Contig4-3097_0055|orf6.8101|CA5327|CaJ7.0436|CaJ7_0436|CaO19_7201|CaO19.7201	Actin binding protein, ortholog of S. cerevisiae Sla2p; required for alkaline pH-induced hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	846620	847408	-	orf19.7200	846620	847408	1	847408	846620	847360	846836		IPF2137.1|Contig4-3097_0053|orf6.8100|CA5326|CaJ7.0437|CaO19.7200|CaO19_7200|CaJ7_0437|IPF2137	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	847571	848196	-	orf19.7199	847571	848196	1	848196	847571	848137	847631		IPF2138.1|Contig4-3097_0052|orf6.8099|CA5325|CaJ7.0438|CaJ7_0438|CaO19_7199|CaO19.7199|IPF2138	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	847582	847830	+	ntar_1145	847582	847830	1	847582	847830					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	848221	849891	+	orf19.7198	848221	849891	1	848221	849891	848780	849775		IPF2140.1|Contig4-3097_0049|orf6.8098|CA5324|CaJ7.0439|CaO19.7198|CAF40|CaO19_7198|CaJ7_0439|IPF2140	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	849951	852592	+	orf19.7197	849951	852592	1	849951	852592	850094	852331		IPF2142.1|Contig4-3097_0048|orf6.8097|CA5323|CaJ7.0440|CaO19_7197|CaJ7_0440|CaO19.7197|IPF2142	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	852981	854767	+	orf19.7196	852981	854767	1	852981	854767	853153	854634		PRB1|IPF2144.1|Contig4-3097_0044|Contig4-3097_0045|orf6.8096|CA5322|CaJ7.0441|CaO19.7196|PRB12|CaO19_7196|CaJ7_0441	Protein described as a vacuolar protease; upregulated in the presence of human neutrophils [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	854402	854805	-	ntar_1146	854402	854805	1	854805	854402	854587	854402			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	854988	856101	+	orf19.7195	854988	856101	3	854988|855314|855485	855204|855378|856101	855163	855917	RAD6	IPF2145.1|Contig4-3097_0043|orf6.8095|CA5321|CaJ7.0442|RAD6.3f|RAD6.3	Negative regulator of hyphal growth; required for wild-type UV resistance; acts in pathway with Efg1p ; functional homolog of S. cerevisiae Rad6p; transcription is UV-induced, slightly repressed during hyphal growth; gene has two introns [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	855891	856999	-	orf19.7194	855891	856999	1	856999	855891	856999	856073		IPF2147|IPF2147.2|Contig4-3097_0041|orf6.8094|CA5320|CaJ7.0443|CaO19_7194|CaJ7_0443|CaO19.7194	Protein not essential for viability; decreased transcription is observed upon fluphenazine treatment; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr7	857069	859301	-	orf19.7193	857069	859301	1	859301	857069	859180	857150		IPF2150.2|Contig4-3097_0040|orf6.8093|CA5319|CaJ7.0445|SSH4|CaO19.7193|CaJ7_0445|CaO19_7193|IPF2150	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	859734	860063	+	orf19.7192	859734	860063	1	859734	860063	859734	860063		IPF27370.1|orf6.8092|CaJ7.0446|CaJ7_0446|CaO19_7192|CaO19.7192	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	860076	861390	+	orf19.7190	860076	861390	1	860076	861390	860197	861258	OGG1	IPF2154.1|Contig4-3097_0039|orf6.8090|CA5318|CaJ7.0448|CaO19.7190|CaJ7_0448|CaO19_7190	Ortholog of S. cerevisiae OGG1, which encodes a mitochondrial DNA glycosylase/lyase involved in base excision repair; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	861238	861791	-	orf19.7188	861238	861791	1	861791	861238	861769	861443	RPP1B	RP1B|CARP1B|IPF2156.1|RPP1A-2|Contig4-3097_0037|orf6.8088|CA5317|CaJ7.0449|CaJ7_0449|CaO19_7188|CaO19.7188	Conserved acidic ribosomal protein, likely to be involved in regulation of translation elongation; interacts with Rpp2Ap; one of four similar C. albicans ribosomal proteins (Rpp1Ap, Rpp1Bp, Rpp2Ap, Rpp2Bp); transcription activated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	861959	862978	-	orf19.7187	861959	862978	1	862978	861959	862917	862123	MAM33	IPF2157.1|Contig4-3097_0036|orf6.8087|CA5316|CaJ7.0451|CaO19_7187|CaJ7_0451|CaO19.7187	Predicted ORF in Assemblies 19, 20 and 21; regulated by Ssn6p; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	863046	865562	-	orf19.7186	863046	865562	1	865562	863046	864801	863341	CLB4	orf6.8086|CYB4|CYB99|CYB2|IPF2159.2|Contig4-3097_0035|CA5315|CaJ7.0452|CaO19.7186|CaJ7_0452|CaO19_7186	B-type mitotic cyclin; nonessential; negative regulator of pseudohyphal growth; dispensible for mitotic exit, cytokinesis; increased CLB4 transcript detected in fkh2 mutant; farnesol-upregulated in biofilm; reduced total RNA in clb4 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	865906	866021	-	tl(uaa)5	865906	866021	2	866021|865951	865983|865906					tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	866333	867936	-	orf19.7185	866333	867936	1	867936	866333	867936	866479		IPF2161.2|Contig4-3097_0033|orf6.8085|CA5314|CaJ7.0453|CaJ7_0453|CaO19_7185|HAT2|CaO19.7185	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	868083	868775	-	orf19.7184	868083	868775	1	868775	868083	868566	868102		IPF2163.2|Contig4-3097_0032|orf6.8084|CA5313|CaJ7.0454|CaO19_7184|CaJ7_0454|CaO19.7184|VPS552|IPF2163	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	868733	869625	+	orf19.7183	868733	869625	1	868733	869625	868860	869390		IPF2165.1|Contig4-3097_0030|orf6.8083|CA5312|CaJ7.0455|CaO19.7183|CaO19_7183|CaJ7_0455|IPF2165	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	869275	870306	-	orf19.7182	869275	870306	1	870306	869275	870254	869448		IPF2166.1|Contig4-3097_0028|orf6.8082|CA5311|CaJ7.0456|CaO19_7182|CaJ7_0456|CaO19.7182|IPF2166	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	870406	872191	+	orf19.7181	870406	872191	1	870406	872191	870489	872147		IPF2167.1|Contig4-3097_0026|orf6.8081|CA5310|CaJ7.0457|CaO19.7181|CaJ7_0457|CaO19_7181|IPF2167	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	872303	874277	+	orf19.7179	872303	874277	1	872303	874277	872321	874237		IPF2170.1|Contig4-3097_0025|orf6.8079|CA5309|CaJ7.0459|SSC1|CaO19.7179|CaJ7_0459|CaO19_7179|IPF2170	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	874143	875264	-	orf19.7178	874143	875264	1	875264	874143	875213	874362	PRE5	IPF2171.1|Contig4-3097_0023|orf6.8078|CA5308|CaJ7.0460|CaO19.7178|CaJ7_0460|CaO19_7178	Alpha6 subunit of the 20S proteasome; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	875377	878419	-	orf19.7177	875377	878419	1	878419	875377	878376	875434	KAP120	IPF2172.1|Contig4-3097_0022|orf6.8077|CA5307|CaJ7.0461|CaO19.7177|CaO19_7177|CaJ7_0461|IPF2172	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	878433	880157	-	orf19.7176	878433	880157	1	880157	878433	879887	878622	NPT1	IPF2173.1|Contig4-3097_0021|orf6.8076|CA5306|CaJ7.0462|CaO19.7176|CaO19_7176|CaJ7_0462	Putative nicotinate phosphoribosyltransferase, involved in NAD salvage pathway; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	880246	881541	+	orf19.7175	880246	881541	1	880246	881541	880388	881383	HLJ1	IPF2175.1|Contig4-3097_0019|orf6.8075|CA5305|CaJ7.0464|CaJ7_0464|CaO19_7175|CaO19.7175|IPF2175	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	881544	883338	+	orf19.7173	881544	883338	1	881544	883338	881593	883314		IPF2178.1|Contig4-3097_0018|orf6.8073|CA5304|CaJ7.0466|CaJ7_0466|CaO19_7173|CaO19.7173|IPF2178	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	883500	883889	-	orf19.7170	883500	883889	1	883889	883500	883889	883500			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	885221	886021	-	orf19.7167	885221	886021	1	886021	885221	886021	885221			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	887185	888683	-	orf19.7166	887185	888683	1	888683	887185	888621	887278		IPF2186.1|Contig4-3097_0006|orf6.8066|CA5301|CaJ7.0473|CaO19_7166|CaJ7_0473|CaO19.7166|IPF2186	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed in an azole-resistant strain that overexpresses MDR1; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	888976	889124	-	ntar_1147	888976	889124	1	889124	888976					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	889260	890240	-	orf19.7165	889260	890240	1	890240	889260	890240	889584		IPF2189.1|Contig4-3097_0004|orf6.8065|CA5300|CaJ7.0474|CaO19.7165|CaJ7_0474|CaO19_7165|IPF2189	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr7	890266	891542	+	orf19.7164	890266	891542	1	890266	891542	890363	891457		IPF2190.1|Contig4-3097_0002|orf6.8064|CA5299|CaJ7.0475|CaJ7_0475|CaO19_7164|CaO19.7164|IPF2190	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	891596	892194	+	orf19.7163	891596	892194	1	891596	892194	891606	892013		IPF2191.2|Contig4-3097_0001|orf6.8063|CaO19.7163	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	892015	893026	-	orf19.7161	892015	893026	1	893026	892015	892977	892132	SUI3	IPF19809.1|Contig4-3097_0060|orf6.8061|CA5298|CaJ7.0477|CaJ7_0477|CaO19_7161|CaO19.7161	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	893091	893876	-	orf19.7160	893091	893876	1	893876	893091	893852	893214		IPF1957.1|orf6.8060|CA5297|CaJ7.0479|CaO19.7160|YAR1|CaJ7_0479|CaO19_7160	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	893961	897103	+	orf19.7159	893961	897103	1	893961	897103	894002	896905		IPF1956.1|Contig4-3083_0030|orf6.8059|CA5296|CaJ7.0480|CaJ7_0480|CaO19_7159|CaO19.7159|IPF1956	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr7	897177	898838	+	orf19.7158	897177	898838	1	897177	898838	897177	898838		IPF1954.1|Contig4-3083_0001|orf6.8058|CA5295|CaJ7.0481|CaO19_7158|CaJ7_0481|CaO19.7158|IPF1954	Protein of allantoate permease family; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr7	897262	897580	-	ntar_1148	897262	897580	1	897580	897262	897387	897262			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	897914	898138	-	ntar_1149	897914	898138	1	898138	897914					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	898344	898635	-	ntar_1150	898344	898635	1	898635	898344	898635	898414			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	898932	899818	+	orf19.7157	898932	899818	2	898932|899009	898956|899818	898941	899760		IPF1952.1|Contig4-3083_0002|orf6.8057|CA5294|CaJ7.0482|CaO19.7157|CaO19_7157|CaJ7_0482|IPF1952	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	900106	902348	+	orf19.7156	900106	902348	1	900106	902348	900108	902348	FAA2-3	IPF1949.1|Contig4-3083_0004|orf6.8056|CA5293|CaJ7.0483|FAA23|CaJ7_0483|CaO19_7156|CaO19.7156|FAA24	Predicted acyl CoA synthetase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	902285	904072	-	orf19.7154	902285	904072	1	904072	902285	904056	902398	UTP18	IPF1948.1|Contig4-3083_0005|orf6.8054|CA5292|CaJ7.0484|CaO19.7154|CaJ7_0484|CaO19_7154|IPF1948	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	904180	907451	-	orf19.7153	904180	907451	1	907451	904180	907312	904235		IPF1945.2|Contig4-3083_0006|orf6.8053|CA5291|CaJ7.0486|CaO19_7153|CaJ7_0486|LOS1|CaO19.7153	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	907563	908888	-	orf19.7152	907563	908888	1	908888	907563	908685	907588		IPF1943.2|Contig4-3083_0008|Contig4-3083_0009|orf6.8052|CA5290|CaJ7.0487|CYS4|CaO19.7152|CaJ7_0487|CaO19_7152|IPF1943	Protein similar to Aspergillus CYSK O-acetylserine sulfhydrylase, suggesting that C. albicans uses an O-acetyl-serine (OAS) pathway of sulfur assimilation; upregulated in biofilm; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	912160	912795	-	ntar_1151	912160	912795	1	912795	912160					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	915019	915161	-	ntar_1152	915019	915161	1	915161	915019					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	915482	915780	-	ntar_1153	915482	915780	1	915780	915482	915780	915574			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	915533	915967	+	orf19.7151	915533	915967	1	915533	915967	915533	915967		IPF1935.2|Contig4-3083_0015|orf6.8051|CaJ7.0488|CaO19.7151|CaJ7_0488|CaO19_7151	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	918382	919948	+	orf19.7150	918382	919948	1	918382	919948	918848	919780	NRG1	IPF1932.1|Contig4-3083_0019|orf6.8050|CA5289|CaJ7.0489|CaO19_7150|CaJ7_0489|CaO19.7150	Transcriptional repressor; regulates hyphal genes, virulence genes, chlamydospore development, and genes involved in rescue and stress responses; effects both Tup1p-dependent (major) and -independent (minor) regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	924375	926417	-	orf19.7149	924375	926417	1	926417	924375	926413	924665		IPF1928.2|Contig4-2346_0001|Contig4-2346_0002|orf6.8049|CA5288|CaJ7.0490|CaO19.7149|CaJ7_0490|CaO19_7149|IPF1928	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	928161	928395	+	ntar_1154	928161	928395	1	928161	928395					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	928833	930524	+	orf19.7148	928833	930524	1	928833	930524	928833	930524	TPO2	IPF1922.2|Contig4-2346_0003|orf6.8048|TPO1|CA5287|CaJ7.0493|CaJ7_0493|CaO19_7148|CaO19.7148|IPF1922	Putative polyamine transport protein; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	929852	930568	-	ntar_1155	929852	930568	1	930568	929852					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr7	930572	932861	+	orf19.7144	930572	932861	2	930572|931238	930817|932861	930583	932715		IPF1919.2|orf6.8044|CA5285|CaJ7.0498|HBS1|HBS1.3f|IPF1918.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	932681	933627	-	orf19.7141	932681	933627	1	933627	932681	933627	932707	UFE1	orf6.8041|IPF1914.1|Contig4-2757_0012|CA5284|CaJ7.0500|CaJ7_0500|CaO19_7141|CaO19.7141	Protein interacting with Sec20p, possibly involved in retrograde transport between the Golgi and the endoplasmic reticulum; functional homolog of S. cerevisiae Ufe1p, which is an ER t-SNARE that mediates the retrograde traffic [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	933680	934437	-	orf19.7140	933680	934437	1	934437	933680	934426	933680		IPF1912.1|Contig4-2757_0011|orf6.8040|CA5283|CaJ7.0501|CaO19_7140|CaJ7_0501|CMT1|CaO19.7140|IPF1912	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	934496	934894	+	orf19.7139	934496	934894	1	934496	934894	934496	934894		IPF1911.1|Contig4-2757_0009|orf6.8039|CA5282|CaJ7.0502|CaJ7_0502|CaO19_7139|CaO19.7139|IPF1911	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	934914	939301	+	orf19.7136	934914	939301	1	934914	939301	934914	939119	SPT6	IPF1910.1|Contig4-2757_0008|orf6.8036|CA5281|CaJ7.0509|CaO19.7136|CaJ7_0509|CaO19_7136	Protein similar to S. cerevisiae Spt6p transcription elongation factor; transposon mutation affects filamentous growth; transcription is upregulated in an RHE model of oral candidiasis and in clinical isolates from oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr7	939057	940449	-	orf19.7131	939057	940449	1	940449	939057	940339	939116		IPF1899.2|Contig4-2757_0007|orf6.8031|CA5280|CaJ7.0511|CaO19.7131|BBH1|CaJ7_0511|IPF1899	Butyrobetaine dioxygenase, the fourth enzyme of the carnitine biosynthesis pathway [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	940347	940976	+	orf19.7130	940347	940976	1	940347	940976	940494	940895		IPF1896.2|Contig4-2757_0004|orf6.8030|CaJ7.0512|CaO19.7130|CaO19_7130|CaJ7_0512	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	940750	941567	-	orf19.7128	940750	941567	1	941567	940750	941535	941029	SYS1	IPF1895.1|orf6.8028|CA5279|CaJ7.0514|CaO19.7128|CaJ7_0514|CaO19_7128	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr7	942055	942471	-	orf19.7127.1	942055	942471	1	942471	942055	942255	942055		IPF1893.1|CA5278|CTA29.3f|CTA29.exon2	Putative protein of unknown function, transcription is upregulated in an RHE model of oral candidiasis; ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr7	942861	943388	-	orf19.7127	942861	943388	1	943388	942861	943388	942861	TLO16	IPF1892.1|Contig4-2584_0003|Contig4-3013_0007|orf6.8027|CA5277|CaJ7.0516|TLO16b|CaO19_7127|CaJ7_0516|CaO19.7127|CTA227|CTA29.5f|CTA29.exon1	Member of a family of telomere-proximal genes of unknown function; may be spliced in vivo [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr7	944915	945041	-	ntar_1156	944915	945041	1	945041	944915					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	4637	6890	-	orf19.7545	4637	6890	1	6890	4637	6890	4884		IPF324.2|Contig4-2956_0011|orf6.8797|CA5875|CaO19.7545|IPF324.3f|IPF324.3	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	5057	7614	+	ntar_1157	5057	7614	1	5057	7614	6975	7214			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	7530	8580	-	ntar_1421	7530	8580	3	8580|8350|8196	8405|8252|7530	8557	8314			 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	9111	9863	+	orf19.7544	9111	9863	1	9111	9863	9111	9863	TLO1	CTA2|IPF328.2|Contig4-2956_0006|orf6.8796|CA5874|CaO19.7544|CTA216|CTA23	Member of a family of telomere-proximal genes of unknown function; hyphal-induced expression [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	10308	10418	+	tl(caa)6	10308	10418	2	10308|10375	10346|10418					tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	10646	12120	-	orf19.7539.1	10646	12120	1	12120	10646	11815	10646		CaO19.7542	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chrR	13669	14871	+	orf19.7539	13669	14871	1	13669	14871	13684	14823	INO2	IPF333.1|Contig4-3048_0008|orf6.8791|CA5872|CaO19.7539|IPF333	Transcriptional activator that may be involved in regulation of ribosomal protein genes; forms a heterodimer with Ino4p; related to <i>S. cerevisiae</i> Ino2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	14826	16827	-	orf19.7538	14826	16827	1	16827	14826	16827	14971		IPF336.1|Contig4-3048_0007|orf6.8790|CA5871|PIF1|CaO19.7538|PIF2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	16909	21366	+	orf19.7537	16909	21366	1	16909	21366	16909	21366	BNR1	IPF345.1|Contig4-3048_0005|orf6.8789|CA5870|BNI1|CaO19.7537|IPF345	Formin; probable role in hyphal cytoskeletal polarity; synthetic lethality if Bnr1p and Bni1p are absent [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	21385	24518	+	orf19.7534	21385	24518	1	21385	24518	21385	24462	MIS12	IPF349.1|Contig4-3048_0003|Contig4-3048_0004|CA5869|CaO19.7534|MIS1|orf6.8786	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	24438	25163	-	orf19.7531	24438	25163	1	25163	24438	25163	24474		IPF351.1|IPF351|Contig4-3048_0002|orf6.8783|YMR90|CA5868|CaO19.7531	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced upon yeast-hyphal transition; benomyl or caspofungin induced; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	25226	28369	-	orf19.7529	25226	28369	1	28369	25226	27540	25279	EPL1	IPF355.1|Contig4-3048_0022|orf6.8781|CA5867|CaO19.7529	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	28506	30784	+	orf19.7527	28506	30784	1	28506	30784	28507	30687		IPF361.1|Contig4-2252_0004|orf6.8779|CA5866|CaO19.7527|IPF361	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	30695	32448	-	orf19.7523	30695	32448	1	32448	30695	32402	30873	MKC1	IPF363.1|Contig4-2252_0001|orf6.8775|CA5865|CaO19.7523	MAP kinase; role in biofilm formation, contact-induced invasive filamentation, systemic virulence in mouse, cell wall structure/maintenance, caspofungin response; phosphorylated on surface contact, membrane perturbation, or cell wall stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	32969	34269	-	orf19.7522	32969	34269	1	34269	32969	34247	33075		IPF364.2|Contig4-2252_0002|orf6.8774|CA5864|CaO19.7522|IPF364	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	36338	38985	+	orf19.7521	36338	38985	1	36338	38985	36752	38833	REP1	IPF370.2|Contig4-3107_0081|orf6.8773|CA5863|CaO19.7521|IPF370	Protein involved in negative regulation of MDR1 transcription; mutants show increased resistance to azole drugs [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	38892	40359	-	orf19.7520	38892	40359	1	40359	38892	40227	39001	POT1	IPF372.1|POT11|Contig4-3107_0080|orf6.8772|CA5862|CaO19.7520	Putative peroxisomal 3-oxoacyl CoA thiolase; transcription is regulated by Nrg1p and Mig1p; farnesol regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	40753	41742	-	orf19.7519	40753	41742	1	41742	40753	41283	40843		IPF373.1|Contig4-3107_0078|orf6.8771|CA5861|CaO19.7519|IPF373	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	41616	43456	+	orf19.7518	41616	43456	1	41616	43456	41616	43364		ZCF38|IPF376.1|Contig4-3107_0075|orf6.8770|CA5860|TEA2|CaO19.7518|IPF376	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	43250	44903	-	orf19.7517	43250	44903	1	44903	43250	44739	43351	CHT1	IPF377.2|Contig4-3107_0074|orf6.8769|CA5859|CaO19.7517	Chitinase; putative N-terminal catalytic domain; has secretory signal sequence; lacks S/T region and N-glycosylation motifs of Chs2p and Chs3p; alkaline downregulated; expression not detected in yeast-form or hyphal cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	45534	48498	+	orf19.7516	45534	48498	1	45534	48498	45583	48474		IPF380.1|Contig4-3107_0072|orf6.8768|CA5858|BGL97|CaO19.7516|IPF380	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	49543	51401	+	orf19.7514	49543	51401	1	49543	51401	49655	51316	PCK1	IPF385.1|Contig4-3107_0068|orf6.8766|CA5857|CaO19.7514	Phosphoenolpyruvate carboxykinase; role in gluconeogenesis; regulated by hyphal switch, carbon source; repressed on glucose; induced by fluconazole, phagocytosis, H2O2; predicted ATP-dependent, dimeric; predicted PKC phosphorylation sites [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	52216	53972	+	orf19.7513	52216	53972	1	52216	53972	52344	53912		IPF387.1|Contig4-3107_0066|orf6.8765|CA5856|ALK2|CaO19.7513	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	54267	56480	+	orf19.7512	54267	56480	1	54267	56480	54836	56452		IPF389.2|Contig4-3107_0063|Contig4-3107_0064|orf6.8764|CA5855|CaO19.7512|ALK3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	54400	54545	-	ntar_1158	54400	54545	1	54545	54400					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	56598	62206	+	orf19.7511	56598	62206	1	56598	62206	56627	62170		IPF393.2|Contig4-3107_0058|Contig4-3107_0062|orf6.8763|CA5854|NUP192|CaO19.7511|IPF393	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	62271	62611	+	orf19.7509.2	62271	62611	2	62271|62550	62490|62611	62271	62572	LSM6	IPF395.1|Contig4-3107_0056|CA5853	ORF Predicted by Annotation Working Group; flucytosine induced [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	62766	63219	+	orf19.7509.1	62766	63219	2	62766|62919	62856|63219	62794	63164	ATP17	IPF396.1|Contig4-3107_0055|CA5852|ATP17.3	Protein described as a component of mitochondrial ATPase complex; downregulated by Efg1p; flucytosine induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	63479	67427	+	orf19.7510	63479	67427	1	63479	67427	63737	67375	KIN2	IPF402.1|Contig4-3107_0054|orf6.8762|CA5851|CaO19.7510|KIN1	Putative protein of with similarity to S. cerevisiae Kin2p, transcription is positively regulated by Tbf1; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	67328	67866	-	orf19.7507	67328	67866	1	67866	67328	67866	67399		IPF403.1|Contig4-3107_0053|orf6.8759|CA5850|CaO19.7507|IPF404.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	67793	69027	-	orf19.7506	67793	69027	1	69027	67793	69016	67793		IPF404.1|Contig4-3107_0051|orf6.8758|CA5849|CaO19.7506|IPF404.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	71974	73232	+	orf19.7504	71974	73232	1	71974	73232	72120	73049		IPF407.1|Contig4-3107_0046|orf6.8756|CA5848|CaO19.7504|IPF407	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; induced in core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	73423	74526	+	orf19.7503	73423	74526	1	73423	74526	73423	74526	CDA2	IPF408.1|Contig4-3107_0044|orf6.8755|CA5847|CaO19.7503	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	75418	77003	-	orf19.7502	75418	77003	1	77003	75418	76707	75931		IPF409.1|Contig4-3107_0039|orf6.8754|CA5846|RNT1|CaO19.7502|IPF409	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	81968	83545	-	orf19.7501	81968	83545	1	83545	81968	83460	82153		IPF412.1|Contig4-3107_0030|orf6.8753|CA5845|CaO19.7501|NAP1	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	83755	86323	-	orf19.7500	83755	86323	1	86323	83755	86206	83900	PXA1	IPF414.1|Contig4-3107_0029|orf6.8752|CA5844|CaO19.7500	Putative peroxisomal, half-size adrenoleukodystrophy protein (ALD or ALDp) subfamily ABC family transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	86624	87225	-	orf19.7499.1	86624	87225	1	87225	86624	87087	86896			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	87815	89426	+	orf19.7499	87815	89426	1	87815	89426	88067	89272		IPF416.1|Contig4-3107_0023|orf6.8751|CA5843|CaO19.7499|IPF416	Putative nicotinic acid mononucleotide adenylyltransferase, involved in NAD salvage pathway [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	89359	91854	-	orf19.7498	89359	91854	1	91854	89359	91784	89454	LEU1	IPF417.2|Contig4-3107_0022|orf6.8750|CA5842|CaO19.7498	Protein described as 3-isopropylmalate dehydratase; antigenic in human; decreased expression in hyphae compared to yeast-form cells; alkaline downregulated; upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	92267	95016	+	orf19.7497	92267	95016	1	92267	95016	92319	94898		IPF420.2|Contig4-3107_0021|orf6.8749|CA5841|CaO19.7497|IPF420	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	95173	96656	+	orf19.7495	95173	96656	1	95173	96656	95291	96589		IPF421.1|Contig4-3107_0020|orf6.8747|CA5840|CaO19.7495|OYE30|EBP6	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	96961	102153	+	orf19.7494	96961	102153	1	96961	102153	96961	102075		IPF423.1|Contig4-3107_0017|orf6.8746|CA5839|CaO19.7494|IPF423	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	101932	104087	-	orf19.7492	101932	104087	1	104087	101932	104010	102103	SWC4	IPF424.1|Contig4-3107_0014|orf6.8744|CA5838|CaO19.7492|IPF424	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	104187	105468	+	orf19.7491	104187	105468	1	104187	105468	104234	105313		IPF426.1|Contig4-3107_0013|orf6.8743|CA5837|RTT109|CaO19.7491|IPF426	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	105677	107474	+	orf19.7490	105677	107474	1	105677	107474	105871	107460		IPF428.1|Contig4-3107_0012|orf6.8742|CA5836|CaO19.7490|IPF428	Predicted membrane transporter, member of the fucose:proton symporter (FHS) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	107328	107929	-	orf19.7489.3	107328	107929	1	107929	107328	107864	107595		IPF429.1|Contig4-3107_0011|CA5835|IPF429	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	108039	113825	-	orf19.7489	108039	113825	1	113825	108039	112632	108226		IPF434.1|Contig4-3107_0010|orf6.8741|CA5834|CaO19.7489|LRG1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	115400	116244	-	orf19.7488	115400	116244	1	116244	115400	116160	115609		IPF436.1|Contig4-3107_0006|orf6.8740|CA5833|CaO19.7488|IMP3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	116405	117053	-	ntar_1159	116405	117053	1	117053	116405	116664	116503			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	116823	118079	+	orf19.7487	116823	118079	1	116823	118079	116823	118079		IPF437.1|Contig4-3107_0004|orf6.8739|CA5832|POL91|CaO19.7487|Zorro1c	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	117317	117648	-	ntar_1160	117317	117648	1	117648	117317	117568	117392			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	117798	118187	-	ntar_1161	117798	118187	1	118187	117798					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	118366	119182	+	orf19.7486	118366	119182	1	118366	119182	118396	119097	MRPL6	IPF438.2|Contig4-3107_0001|orf6.8738|CA5831|CaO19.7486	Putative mitochondrial ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	119339	120321	+	orf19.7485	119339	120321	1	119339	120321	119377	120258		IPF2480.2|Contig4-2988_0018|orf6.8737|CA5830|MRPL9|CaO19.7485	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	120285	120551	-	ntar_1162	120285	120551	1	120551	120285					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	120706	120840	-	snrnau5	120706	120840	1	120840	120706					Highly conserved U5 small nuclear RNA involved in splicing; exists predominantly as a short form lacking the 3' 18 nt of the annotated sequence, but full-length transcript is also present in vivo; ortholog of S. cerevisiae SNR7-L and SNR7-S [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	120897	121888	-	orf19.7484	120897	121888	1	121888	120897	121861	120986	ADE1	IPF2482.1|Contig4-2988_0016|orf6.8736|CA5829|CaO19.7484	Phosphoribosylaminoimadazole succinocarboxamide synthetase, enzyme of adenine biosynthesis; not induced during GCN response, in contrast to the S. cerevisiae ortholog; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	122042	125956	-	orf19.7483	122042	125956	1	125956	122042	125565	122326	CRM1	IPF2484.2|Contig4-2988_0014|Contig4-2988_0015|orf6.8735|CA5828|CaO19.7483	Functional homolog of S. cerevisiae Crm1p, which acts in protein nuclear export; predicted to be resistant to antifungal drug leptomycin B; partially suppresses signal transduction defects of S. cerevisiae ste20 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	125674	125922	+	ntar_1163	125674	125922	1	125674	125922					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	126534	127088	+	orf19.7482	126534	127088	1	126534	127088	126534	127088		IPF2485.1|Contig4-2988_0013|orf6.8734|CA5827|CaO19.7482|IPF2485	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	127073	128351	-	orf19.7481	127073	128351	1	128351	127073	128189	127176	MDH1	orf6.8733|IPF2486.1|MDH1-2|Contig4-2988_0011|CA5826|CaO19.7481|MDH2|MDH11	Protein described as malate dehydrogenase, mitochondrial; transcription regulated by Mig1p and Tup1p, white-opaque switching; induced in high iron, biofilm; regulated upon phagocytosis; antigenic during murine or human infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	129416	130015	+	orf19.7480	129416	130015	1	129416	130015	129416	130015		IPF2489.1|Contig4-2988_0009|orf6.8732|CA5825|CaO19.7480|IPF2489	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	129952	130145	-	ntar_1164	129952	130145	1	130145	129952					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	130500	133424	+	orf19.7479	130500	133424	1	130500	133424	130650	133373	NTH1	orf6.8731|NTC1|IPF2490.1|Contig4-2988_0007|CA5824|CaO19.7479	Neutral trehalase; hyphal induction in homozygous null mutant is delayed but not reduced overall; not required for virulence in mouse systemic infection; homodimeric enzyme; possible regulatory cAMP-dependent phosphorylation at S10 and S213 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	132856	133742	-	ntar_1165	132856	133742	1	133742	132856	133032	132856			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	133873	135680	+	orf19.7478	133873	135680	1	133873	135680	134047	135579		IPF2493.1|Contig4-2988_0006|orf6.8730|CA5823|COQ1|CaO19.7478	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	135935	137081	+	orf19.7477	135935	137081	1	135935	137081	136157	136795	YRB1	orf6.8729|IPF2494.1|Contig4-2988_0004|CA5822|CaO19.7477	Functional homolog of S. cerevisiae Yrb1p, which regulates Gsp1p GTPase activity and thereby affects nucleocytoplasmic transport and cytoskeletal dynamics; transcription is not regulated by white-opaque switching or by dimorphic transition [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	137391	141502	+	orf19.7475	137391	141502	1	137391	141502	137391	141383	PHO81	IPF2499.1|Contig4-2988_0003|orf6.8727|CA5821|CaO19.7475	Predicted ORF in Assemblies 19, 20 and 21; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	141352	143877	-	orf19.7473	141352	143877	1	143877	141352	143784	141511		IPF2500.2|Contig4-2988_0019|orf6.8725|CA5820|CaO19.7473|IPF2500	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	145031	149611	+	orf19.7472	145031	149611	1	145031	149611	145031	149611	IFF4	IPF2507.1|Contig4-3027_0015|orf6.8724|CA5819|CaO19.7472	Putative GPI-anchored protein; homozygous null mutant germ tubes show decreased adhesion to plastic substrate; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	149775	151359	-	orf19.7469	149775	151359	1	151359	149775	151359	149878	ARG1	IPF2508.1|Contig4-3027_0013|orf6.8721|CA5818|CaO19.7469	Similar to argininosuccinate synthase; enzyme of arginine biosynthesis; increased transcription is observed upon benomyl treatment; regulated by Gcn4p, Rim101p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	152025	153928	+	orf19.7468	152025	153928	1	152025	153928	152187	153800		IPF2511.1|Contig4-3027_0009|Contig4-3027_0011|orf6.8720|CA5817|CaO19.7468|IPF2511	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	153346	153912	-	ntar_1166	153346	153912	1	153912	153346					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	154603	162217	+	orf19.7466	154603	162217	2	154603|155254	154869|162217	155339	162019	ACC1	IPF2516.1|Contig4-3027_0007|orf6.8718|CA5816|CaO19.7466	Protein with similarity to acetyl-coenzyme-A carboxylases; regulated by Efg1p; amphotericin B repressed; caspofungin repressed; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	163022	164161	+	orf19.7464	163022	164161	1	163022	164161	163022	164161		IPF2517.1|Contig4-3027_0005|orf6.8716|CA5815|CaO19.7464|IPF2517	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	164523	165788	+	orf19.7463	164523	165788	1	164523	165788	164523	165788		IPF2521.1|Contig4-3027_0001|orf6.8715|CA5814|CaO19.7463|IPF2521	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chrR	165691	167137	-	orf19.7460	165691	167137	1	167137	165691	167072	165840		IPF2522.1|Contig4-3027_0019|orf6.8712|CA5813|CaO19.7460|IPF2522	Putative protein of unknown function, transcription is activated in the presence of elevated CO2; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	167225	168690	+	orf19.3287	167225	168690	1	167225	168690	167253	168632	BUD22	orf19.10797|IPF24049.1|IPF16944.2|Contig4-1655_0004|orf6.8287|CA5474|IPF16944.3eoc	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	168573	170127	-	orf19.3286	168573	170127	1	170127	168573	170088	168760		orf19.10796|IPF24035.1|IPF16947.2|Contig4-1655_0001|Contig4-1655_0002|orf6.8286|CA5473|CaO19.3286|CaO19.10796|IPF16947	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	170204	171612	+	orf19.3285	170204	171612	1	170204	171612	170227	171612		orf19.10795|IPF24036.1|IPF16948.2|orf6.8285|CA5472|CaO19.10795|CaO19.3285|IPF16948	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chrR	171563	172364	-	orf19.3283	171563	172364	1	172364	171563	172342	171653		orf19.10793|IPF24050.1|IPF302.2|orf6.8283|CA5471|OAR1|CaO19.10793|CaO19.3283|IPF302	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	171669	171992	+	orf19.3284	171669	171992	1	171669	171992	171669	171992		orf6.8284	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	172440	172512	-	tt(agu)3	172440	172512	1	172512	172440				tT(AGU)3.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	172783	174788	-	orf19.3282	172783	174788	1	174788	172783	174635	172986	BMT3	orf19.10792|IPF24024.1|IPF300.1|Contig4-2592_0002|orf6.8282|CA5470|WRY9|CaO19.10792|CaO19.3282|IPF300	Putative beta-mannosyltransferase, required for addition of the 2nd beta-mannose to the acid-stable fraction of cell wall phosphopeptidomannan and for elongation of beta-mannose chains on the phosphopeptidomannan acid-labile fraction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	175639	177289	-	orf19.3281	175639	177289	1	177289	175639	177251	175815		orf19.10791|IPF24034.1|IPF298.1|Contig4-2592_0004|orf6.8281|CA5469|CaO19.10791|CaO19.3281|IPF298	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	176116	176418	+	ntar_1167	176116	176418	1	176116	176418	176221	176418			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	177632	181495	-	orf19.3279	177632	181495	1	181495	177632	181477	177800	HYR4	orf19.10789|IFF7|IPF24076.1|IPF296.1|Contig4-2791_0017|orf6.8279|CA5468|HYR8|CaO19.10789|CaO19.3279	Putative GPI-anchored protein of unknown function; transcription is negatively regulated by Rim101p; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	178157	178540	+	orf19.3280	178157	178540	1	178157	178540	178157	178540		IPF24069.1|IPF28834.1|orf6.8280	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	181984	182167	+	ntar_1168	181984	182167	1	181984	182167					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	182201	184364	-	orf19.3278	182201	184364	1	184364	182201	184247	182262	GSY1	orf19.10788|IPF24014.1|IPF294.1|Contig4-2791_0013|orf6.8278|CA5467|CaO19.3278|CaO19.10788	Protein described as glycogen synthase; enzyme of glycogen metabolism; transcription downregulated upon yeast-hyphal switch and regulated by Efg1p; strong oxidative stress induced; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	185406	185744	-	orf19.3277	185406	185744	1	185744	185406	185744	185406		orf19.10787|IPF24082.1|IPF28838.1|orf6.8277|CaO19.10787|CaO19.3277	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	186069	189070	-	orf19.3276	186069	189070	1	189070	186069	189010	186242	PWP2	orf19.10786|IPF23987.1|IPF290.1|Contig4-2791_0009|orf6.8276|CA5466|CaO19.10786|CaO19.3276	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response; decreased expression in response to prostaglandins; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	186236	186422	+	ntar_1169	186236	186422	1	186236	186422					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	189199	189980	+	orf19.3275	189199	189980	1	189199	189980	189245	189640		orf19.10785|IPF24063.1|IPF288.1|Contig4-2791_0005|orf6.8275|CaO19.3275|CaO19.10785	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	189429	190781	-	orf19.3273	189429	190781	2	190781|189873	189965|189429	190663	189682		orf19.10783|orf19.10784|IPF24047.1|IPF285.1|Contig4-2791_0003|orf6.8273|orf6.8274|CA5464|CA5465|orf19.3274|IPF285.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	190841	192295	+	orf19.3272	190841	192295	1	190841	192295	191184	192179		orf19.10782|IPF24041.1|IPF284.1|Contig4-2791_0001|Contig4-2793_0013|orf6.324|orf6.8272|CA5463|CaO19.10782|CaO19.3272|IPF284	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	191354	191908	-	orf19.3271	191354	191908	1	191908	191354	191908	191354			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	192133	197679	-	orf19.3269	192133	197679	1	197679	192133	197102	192180	GSL2	orf19.10779|orf19.10780|IPF23990.1|IPF279.1|Contig4-2793_0012|orf6.8269|orf6.8270|CA5461|CA5462|orf19.3270|FKS2|GSL23.5f	Protein similar to beta-1,3-glucan synthase; 16 predicted membrane-spanning regions; transcription regulated by Nrg1p; very low gene expression in yeast-form and hyphal cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	197701	198505	-	orf19.3268	197701	198505	1	198505	197701	198468	197965		TMA19|orf19.10778|IPF24053.1|IPF277.1|Contig4-2793_0010|orf6.8268|CA5460|CaO19.3268|CaO19.10778|IPF277	Ortholog of S. cerevisiae Tma19p (Ykl065cp) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	198684	199941	-	orf19.3267	198684	199941	1	199941	198684	199875	198814		orf19.10777|IPF24042.1|IPF276.1|Contig4-2793_0009|orf6.8267|CA5459|CaO19.10777|CaO19.3267|IPF276	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	200025	201333	+	orf19.3266	200025	201333	1	200025	201333	200129	201214		orf19.10776|IPF24039.1|IPF274.1|Contig4-2793_0006|orf6.8266|CA5458|CaO19.3266|CaO19.10776|IPF274	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	201291	201903	-	orf19.3265.1	201291	201903	1	201903	201291	201735	201475			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	202223	204073	+	orf19.3265	202223	204073	1	202223	204073	202224	203894	TRM1	orf19.10775|IPF24029.1|IPF272.1|Contig4-2793_0003|orf6.8265|CA5457|CaO19.10775|CaO19.3265	Protein described as an N2,N2-dimethylguanine tRNA methyltransferase; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	204184	204428	-	ntar_1170	204184	204428	1	204428	204184					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	206282	206807	+	orf19.3264.1	206282	206807	1	206282	206807	206338	206502			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	207629	209365	+	orf19.3264	207629	209365	1	207629	209365	207731	208729	CCE1	orf19.10774|IPF24044.1|IPF267.1|Contig4-2987_0003|orf6.8264|CA5456|CaO19.3264|CaO19.10774|IPF267	Putative Holliday junction resolving enzyme; similar to S. cerevisiae Cce1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	210190	210642	+	orf19.3263	210190	210642	1	210190	210642	210190	210642		orf19.10773|IPF24061.1|IPF263.1|Contig4-2987_0006|orf6.8263|CA5455|CaO19.10773|AFF7|CaO19.3263|IPF263.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	215629	216156	+	orf19.3261	215629	216156	1	215629	216156	215629	216156			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	216643	219275	-	orf19.3260	216643	219275	1	219275	216643	218979	216784		orf19.10770|IPF24007.1|IPF256.1|Contig4-2987_0013|orf6.8260|CA5453|SIS2|CaO19.3260|CaO19.10770|IPF256	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	219385	219538	+	ntar_1171	219385	219538	1	219385	219538					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	219851	220092	+	ntar_1172	219851	220092	1	219851	220092					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	221119	221844	+	orf19.3259	221119	221844	1	221119	221844	221211	221711		orf19.10769|IPF24057.1|IPF252.1|Contig4-2987_0017|orf6.8259|CA5452|SEC11|CaO19.10769|CaO19.3259	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	221685	226135	-	orf19.3256	221685	226135	1	226135	221685	226003	221882	SLN1	orf19.10766|IPF24067.1|IPF250.2|Contig4-2987_0018|Contig4-2987_0019|orf6.8256|CA5451|CaO19.10766|CaO19.3256	Histidine kinase involved in a two-component signaling pathway that regulates cell wall biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	226515	226795	+	ntar_1173	226515	226795	1	226515	226795					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	227529	228691	+	orf19.3255	227529	228691	1	227529	228691	227661	228041		orf19.10765|IPF24070.1|IPF244.1|Contig4-3062_0001|orf6.8255|CaO19.3255|CaO19.10765	Transcription is regulated upon yeast-hyphal switch; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	228280	230794	-	orf19.3254	228280	230794	1	230794	228280	230394	228574		orf19.10764|IPF243|IPF24018.1|IPF243.2|Contig4-3062_0003|orf6.8254|CA5450|DDR48|CaO19.10764|CaO19.3254	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	231335	234443	+	orf19.3252	231335	234443	1	231335	234443	231768	234404		DAL81|orf19.10762|IPF23988.1|IPF236.2|Contig4-3062_0004|Contig4-3062_0007|orf6.8252|CA5449|CaO19.3252|CaO19.10762	Predicted zinc-finger protein of unknown function; has similarity to S. cerevisiae Dal81p, which is a transcription factor involved in the regulation of nitrogen-degradation genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	234455	235166	-	orf19.3251	234455	235166	2	235166|235082	235164|234455	235166	234564	ARC19	orf19.10761|IPF24058.1|IPF235.1|Contig4-3062_0008|orf6.8251|CA5448|CaO19.10761|CaO19.3251|ARC19.3f|ARC19.exon2	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	235393	237268	-	orf19.3250	235393	237268	1	237268	235393	237207	235399		orf19.10760|IPF24017.1|IPF234.1|Contig4-3062_0009|orf6.8250|CA5447|CaO19.3250|PRP40|CaO19.10760|IPF234	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	238047	239663	+	orf19.3249	238047	239663	1	238047	239663	238186	239424	LAG1	orf19.10759|IPF24037.1|IPF233.1|Contig4-3062_0013|orf6.8249|CA5446|CaO19.3249|CaO19.10759	Predicted ORF in Assemblies 19, 20 and 21; amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	239883	240915	+	orf19.3248	239883	240915	1	239883	240915	239887	240888		orf19.10758|IPF24043.1|IPF232.1|Contig4-3062_0014|orf6.8248|CA5445|CaO19.10758|CaO19.3248|IPF232	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	240404	240770	-	ntar_1174	240404	240770	1	240770	240404					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	241117	247709	+	orf19.3247	241117	247709	1	241117	247709	241123	247626		orf19.10757|IPF24051.1|IPF230.2|Contig4-3062_0019|Contig4-3062_0020|orf6.8247|YJL207|CA5444|CaO19.10757|CaO19.3247|IPF230	Predicted ORF in Assemblies 19, 20 and 21; putative ortholog of S. cerevisiae Yjl207cp; likely to be essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	247354	247508	-	ntar_1175	247354	247508	1	247508	247354					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	247996	250747	+	orf19.3245	247996	250747	1	247996	250747	248136	250682		orf19.10755|orf19.10756|IPF24023.1|IPF228.2|Contig4-3062_0023|orf6.8245|orf6.8246|CA5442|CA5443|orf19.3246|IPF18105.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	250618	251252	-	orf19.3244	250618	251252	1	251252	250618	251220	250801		orf19.10754|IPF24060.1|IPF227.1|Contig4-3062_0024|orf6.8244|CA5441|CaO19.3244|CaO19.10754|IPF227	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	251417	253310	+	orf19.3243	251417	253310	1	251417	253310	251463	253133	SRP54	orf19.10753|IPF24028.1|IPF225.1|Contig4-3062_0025|orf6.8243|CA5440|CaO19.3243|CaO19.10753	Predicted ORF in Assemblies 19, 20 and 21; increased transcription in ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	253153	254067	-	orf19.3242	253153	254067	1	254067	253153	254003	253269		orf19.10752|IPF18106.2|IPF224.1|Contig4-3062_0026|orf6.8242|CA5439|CaO19.3242|TAF10|CaO19.10752|TAF25	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	254161	258542	+	orf19.3241	254161	258542	1	254161	258542	254241	258494		orf19.10751|IPF24065.1|IPF223.1|Contig4-3062_0027|Contig4-3062_0028|Contig4-3062_0031|orf6.8241|CA5438|CaO19.10751|CaO19.3241|IPF223	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	258288	259663	-	orf19.3240	258288	259663	1	259663	258288	259606	258566	ERG27	orf19.10750|IPF24040.1|IPF218.1|Contig4-3062_0032|orf6.8240|CA5437|CaO19.3240|CaO19.10750	3-Keto sterol reductase of ergosterol biosynthesis; acts in C-4 sterol demethylation with Erg25p and Erg26p; possible drug target, essential for viability; functional homolog of S. cerevisiae Erg27p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	259703	262405	-	orf19.3239	259703	262405	1	262405	259703	262366	259805	CTF18	orf19.10749|IPF23997.1|IPF217.1|Contig4-3062_0033|orf6.8239|CA5436|CaO19.10749|CaO19.3239	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	263968	264147	+	ntar_1175.5	263968	264147	1	263968	264147	263968	264147			MANUAL ANNOTATION; ntar_1176-like
Ca21chrR	264674	264989	+	ntar_1176	264674	264989	1	264674	264989	264754	264924			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	265499	265909	+	ntar_1177	265499	265909	1	265499	265909	265566	265736			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	266302	266732	+	ntar_1178	266302	266732	1	266302	266732	266394	266576			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	267180	267556	+	ntar_1179.1	267180	267556	1	267180	267556	267236	267382			MANUAL ANNOTATION (edit of ntar_1179); ntar_1176-like
Ca21chrR	267731	268124	+	ntar_1179.2	267731	268124	1	267731	268124	267818	267994			MANUAL ANNOTATION (edit of ntar_1179); ntar_1176-like
Ca21chrR	268166	268346	-	ntar_1180	268166	268346	1	268346	268166					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	268400	268780	+	ntar_1179.3	268400	268780	1	268400	268780	268455	268634			MANUAL ANNOTATION (edit of ntar_1179); ntar_1176-like
Ca21chrR	268606	269012	-	ntar_1181	268606	269012	1	269012	268606	269012	268878			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	269102	269285	-	ntar_1182	269102	269285	1	269285	269102					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	269104	269505	+	orf19.3238	269104	269505	1	269104	269505	269104	269505			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	269794	275150	+	orf19.3237	269794	275150	1	269794	275150	269863	274998		orf19.10747|IPF24059.1|IPF204.1|Contig4-2605_0007|Contig4-2605_0008|orf6.8237|CA5435|CaO19.3237|UFD4|CaO19.10747	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	275286	276305	+	orf19.3235	275286	276305	1	275286	276305	275367	276209		orf19.10745|IPF24045.1|IPF199.2|orf6.8235|CA5434|CAP01|CaO19.10745|CaO19.3235|IPF199	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	276092	276604	-	orf19.3234.1	276092	276604	1	276604	276092	276559	276263	SFT1	IPF24072.1|IPF198.1|CA5433	ORF Predicted by Annotation Working Group; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	277335	278832	+	orf19.3234	277335	278832	1	277335	278832	277560	278738	OYE22	orf19.10744|IPF24038.1|IPF197.1|Contig4-2645_0002|orf6.8234|CA5432|OYE24|CaO19.3234|CaO19.10744|EBP5	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	278767	280473	-	orf19.3233	278767	280473	1	280473	278767	280419	278923		orf19.10743|IPF24033.1|IPF195.1|Contig4-2645_0003|orf6.8233|CA5431|CaO19.10743|CaO19.3233|IPF195	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	282672	284263	+	orf19.3232	282672	284263	1	282672	284263	282672	284237		orf19.10742|IPF24030.1|IPF191.1|Contig4-2645_0009|orf6.8232|CA5430|CaO19.10742|TNA12|CaO19.3232|IPF191	Putative transporter; mutation confers hypersensitivity to toxic ergosterol analog; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	284577	284930	-	ntar_1182.5	284577	284930	1	284577	284930	284678	284869			MANUAL ANNOTATION; ntar_1176-like
Ca21chrR	285238	285683	-	ntar_1183	285238	285683	1	285683	285238	285610	285410			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	286171	286530	-	ntar_1184	286171	286530	1	286530	286171	286449	286240			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	287150	287622	-	ntar_1185	287150	287622	1	287622	287150	287450	287238			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	288106	291032	-	orf19.3231	288106	291032	1	291032	288106	290913	288286	CDC27	orf19.10741|IPF23992.1|IPF185.1|Contig4-2226_0007|orf6.8231|CA5429|CaO19.3231	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle S/G2 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	288502	288764	+	ntar_1186	288502	288764	1	288502	288764					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	291254	295584	-	orf19.3230	291254	295584	1	295584	291254	295246	291728	BOI2	orf19.10740|IPF24079.1|IPF179.1|Contig4-3001_0036|orf6.8230|CA5428|CaO19.3230|CaO19.10740	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	298900	299063	+	ntar_1187	298900	299063	1	298900	299063					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	299573	299878	-	orf19.3229	299573	299878	1	299878	299573	299878	299573		orf19.10739|orf6.3028|CaO19.10739|CaO19.3229	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	300403	303257	+	orf19.3228	300403	303257	1	300403	303257	300887	303082		orf19.10738|IPF24004.1|IPF171.2|Contig4-3001_0019|Contig4-3001_0021|Contig4-3001_0023|orf6.3027|CA1494|CaO19.10738|CaO19.3228|IPF171	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	301860	302067	-	ntar_1188	301860	302067	1	302067	301860					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	302311	305067	-	orf19.3227	302311	305067	1	305067	302311	305011	303476	FTH2	orf19.10737|IPF24031.1|IPF170.2|Contig4-3001_0016|orf6.3026|CA1493|CaO19.10737|FTR3|CaO19.3227	Putative iron transporter; similar to S. cerevisiae Fth1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	305433	306424	-	orf19.3226	305433	306424	1	306424	305433	306353	305775		orf19.10736|IPF24054.1|IPF168.2|Contig4-3001_0014|orf6.3025|CA1492|CaO19.3226|CaO19.10736|IPF168	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	307072	310459	-	orf19.3225	307072	310459	1	310459	307072	310304	307236	CWH43	orf19.10735|IPF24088.1|IPF166.2|Contig4-3001_0010|Contig4-3001_0011|orf6.3024|CA1491|CaO19.3225|CaO19.10735|IPF166	Predicted ORF in Assemblies 19, 20 and 21; transcription is downregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	310713	311643	+	orf19.3223.1	310713	311643	2	310713|310917	310835|311643	310832	311209			Predicted ORF; described as 12kDa subunit of mitochondrial NADH-ubiquinone oxidoreductase; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	311917	313267	+	orf19.3223	311917	313267	2	311917|312307	312050|313267	312004	313144	ATP3	orf19.10734|IPF163.2|IPF18904.2|ATP3.3|Contig4-3001_0004|Contig4-3001_0005|orf6.3023|orf6.1763|CA1489|CA6208|orf19.3224|ATP3.3f	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; caspofungin repressed; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	313348	316670	-	orf19.3222	313348	316670	1	316670	313348	316505	313509		orf19.10733|IPF24090.1|IPF162.2|Contig4-3001_0003|orf6.1764|orf6.3022|CA0686|CaO19.10733|CaO19.3222|IPF162	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	318221	321938	+	orf19.3221	318221	321938	1	318221	321938	318330	321779	CPA2	orf19.10732|IPF24081.1|IPF4967.1|Contig4-2886_0008|CA0687|CaO19.10732|CaO19.3221|orf6.1765	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	322493	324139	+	orf19.2517	322493	324139	1	322493	324139	322493	324139		orf19.10053|IPF24746.1|IPF4969.2|Contig4-2537_0007|orf6.1398|CA0459|CaO19.2517|HOL3|CaO19.10053	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	324270	325441	-	orf19.2518	324270	325441	1	325441	324270	325382	324501		orf19.10054|IPF24764.1|IPF4971.1|Contig4-2537_0005|orf6.1399|CA0460|CaO19.2518|SEC17|CaO19.10054	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	325634	326322	+	orf19.2519	325634	326322	1	325634	326322	325676	326266		orf19.10055|IPF24780.1|IPF4972.1|Contig4-2537_0002|orf6.1400|CA0461|CaO19.2519|NNF1|CaO19.10055|IPF4972	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	326281	327358	-	orf19.2520	326281	327358	1	327358	326281	327299	326337		orf19.10056|IPF18612.2|IPF4973.1|Contig4-2537_0001|orf6.1401|orf6.3376|CA0462|CaO19.2520|MRPS28	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	327417	330536	+	orf19.2521	327417	330536	1	327417	330536	327534	330467		orf19.10057|IPF4976.2|IPF29049.1|IPF18980.2|Contig4-2933_0023|Contig4-2933_0024|orf6.1402|orf6.3375|CA1739|orf19.2522	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	330695	331602	+	orf19.2524	330695	331602	1	330695	331602	330757	331485	MGE1	orf19.10059|IPF24774.1|IPF4977.2|Contig4-2933_0022|orf6.3373|CA1738|CaO19.10059|CaO19.2524	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	331883	333204	+	orf19.2525	331883	333204	1	331883	333204	332030	333160	LYS12	orf19.10060|IPF24758.1|IPF4979.2|Contig4-2933_0019|Contig4-2933_0021|orf6.3372|CA1737|CaO19.2525|CaO19.10060	Protein described as mitochondrial homoisocitrate dehydrogenase; clade-associated gene expression; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	333100	334487	-	orf19.2527	333100	334487	1	334487	333100	334487	333201		orf19.10062|IPF24756.1|IPF4983.1|Contig4-2933_0017|orf6.3370|CA1736|CaO19.2527|CaO19.10062|IPF4983	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	334867	337026	+	orf19.2528	334867	337026	1	334867	337026	334918	336906		orf19.10063|IPF24738.1|IPF4986.2|Contig4-2933_0011|Contig4-2933_0014|orf6.3369|CA1735|CaO19.10063|BDP1|CaO19.2528|IPF4986	Predicted ORF in Assemblies 19, 20 and 21; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	337166	338067	+	orf19.2529	337166	338067	1	337166	338067	337266	337883		orf19.10064|IPF24781.1|IPF4988.1|Contig4-2933_0010|orf6.3368|CA1734|CaO19.2529|GPI15|CaO19.10064|IPF4988	Predicted ORF in Assemblies 19, 20 and 21; shares similarity with human Pig-H, which is involved in glycosylphosphatidylinositol assembly [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	337791	338514	-	orf19.2529.1	337791	338514	1	338514	337791	338431	338186			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	338612	339111	+	ntar_1189	338612	339111	1	338612	339111					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	338784	339126	-	ntar_1190	338784	339126	1	339126	338784					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	339497	339612	-	tl(uaa)2	339497	339612	2	339612|339542	339574|339497				tL(UAA)2.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	340533	340865	-	orf19.2530	340533	340865	1	340865	340533	340865	340533		orf19.10065|orf6.2389|CaO19.10065|CaO19.2530	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	340825	342185	+	orf19.2531	340825	342185	1	340825	342185	341036	342001	CSP37	orf19.10066|orf6.2388|IPF24765.1|IPF4991.2|Contig4-2933_0007|CA1075|CaO19.10066|CaO19.2531|IPF4991	Plasma membrane, hyphal cell wall protein; role in progression of murine systemic infection; predicted P-loop, divalent cation binding, N-glycosylation sites; expressed in yeast and hyphae; hyphal downregulated; lacks S. cerevisiae homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	342394	344292	+	orf19.2532	342394	344292	1	342394	344292	342526	344253	PRS	orf19.10067|orf19.10068|PRSCa|IPF24786.1|IPF24759.1|IPF4992.1|IPF4994.1|Contig4-2933_0005|Contig4-2933_0006|orf6.2387|orf6.2386|CA1074|CA1073|orf19.2533|PRORS.5f	Putative prolyl-tRNA synthetase; monofunctional Class II synthetase; gene is constitutively expressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	344032	345023	-	orf19.2533.1	344032	345023	2	345023|344767	344858|344032	344860	344483		IPF24724.1|IPF4995.1|Contig4-2933_0004|CA1072|SBH1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	345663	348709	+	orf19.2534	345663	348709	1	345663	348709	345905	348490	PIN4	orf19.10069|IPF24728.1|IPF16624.2|Contig4-2933_0003|orf6.2385|orf6.364|CA1071|CaO19.2534|IPF16624	Protein with similarity to S. cerevisiae Pin4p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	349046	349387	-	orf19.2537	349046	349387	1	349387	349046	349387	349046			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	349327	351775	+	orf19.2538	349327	351775	1	349327	351775	349638	351389	PTC2	orf19.10072|IPF24743.1|IPF17818.3|Contig4-3095_0030|orf6.2347|orf6.299|orf6.366|CA0047|CaO19.2538|IPF17818.2	Putative protein phosphatase of the Type 2C-related family (serine/threonine-specific), similar to S. cerevisiae Ptc2p and Ptc3p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	351992	352384	+	ntar_1191	351992	352384	1	351992	352384	352235	352384			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	352941	353276	-	orf19.2539	352941	353276	1	353276	352941	353276	352941		orf19.10073|IPF24810.1|IPF29071.1|orf6.2348|CaO19.2539|CaO19.10073	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	353057	355887	+	orf19.2540	353057	355887	1	353057	355887	353353	355770	SAS3	orf19.10074|IPF24731.1|IPF16878.2|Contig4-2043_0003|orf6.2349|CA1054|CaO19.10074|CaO19.2540	Similar to silencing proteins; increased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	355896	357304	-	orf19.2541	355896	357304	1	357304	355896	357231	355987		orf19.10075|IPF24755.1|IPF17504.2|Contig4-2043_0005|orf6.2350|CA1055|CaO19.2541|CaO19.10075|IPF17504	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	357258	358371	+	orf19.2542	357258	358371	1	357258	358371	357411	358157		orf19.10076|IPF24772.1|IPF17503.1|Contig4-1647_0003|orf6.2351|CA1056|CaO19.10076|CaO19.2542|IPF17503	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	357451	357644	-	ntar_1192	357451	357644	1	357644	357451					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	358460	359767	+	orf19.2544	358460	359767	1	358460	359767	358529	359125		orf19.10078|IPF24783.1|IPF17031.2|Contig4-2742_0011|orf6.2353|CA1057|CaO19.10078|PTH2|CaO19.2544|IPF17031	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	359194	361273	-	orf19.2545	359194	361273	1	361273	359194	361143	359341	DOT6	orf19.10079|IPF24744.1|IPF19898.1|Contig4-2742_0009|orf6.2354|CA1058|CaO19.2545|CaO19.10079	Predicted ORF in Assemblies 19, 20 and 21; repressed upon high-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	361568	363549	-	orf19.2546	361568	363549	2	363549|363443	363514|361568	363519	361881	TRP2	orf19.10080|IPF13684.2|IPF19073.2|Contig4-2742_0007|orf6.1008|orf6.2355|CA1059|CaO19.2546	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	361933	362168	+	ntar_1193	361933	362168	1	361933	362168					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	363741	366841	-	orf19.2547	363741	366841	1	366841	363741	366790	363830		orf19.10081|IPF11552.2|IPF13683.2|Contig4-2742_0006|orf6.1007|orf6.1713|orf6.2356|CA0260|CaO19.2547|IPF13683	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	366989	368216	-	orf19.2549	366989	368216	1	368216	366989	368157	367042		orf19.10082|IPF11553.2|IPF13681.2|IPF19074.1|Contig4-2742_0003|orf6.1005|orf6.1714|orf6.1004|CA0652|orf19.2550	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	368383	371126	-	orf19.2551	368383	371126	1	371126	368383	371056	368753	MET6	orf19.10083|METE|IPF11555.2|IPF29050.1|Contig4-2742_0001|orf6.1715|CA0653|CaO19.10083|CaO19.2551	Essential 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (cobalamin-independent methionine synthase); antigenic during murine or human systemic infection; heat shock, estrogen, possibly biofilm, and GCN-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	371522	375224	+	ntar_1194	371522	375224	1	371522	375224	373886	374080			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	372030	374003	-	orf19.2552	372030	374003	1	374003	372030	374003	372039		orf19.10084|IPF11557.2|IPF11560.1|IPF19449.2|IPF29057.1|IPF11550.3f|orf6.1716|orf6.87|CA0654	Protein similar to S. cerevisiae Pmr1p; amphotericin B induced; previously merged with orf19.2553; unmerged from orf19.2553 in a revision of Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	374217	375284	-	orf19.2553	374217	375284	1	375284	374217	375284	374217		orf19.10085|IPF11560.1|IPF11560.5f|orf6.1717|CA0655|CaO19.2553|ACU1|CaO19.10085	Protein similar to S. cerevisiae Pmr1p; amphotericin B induced; previously merged with orf19.2552 in Assembly 20; unmerged from orf19.2552 in a revision of Assembly 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	377185	378143	+	orf19.2555	377185	378143	1	377185	378143	377252	377908	URA5	orf19.10087|IPF18913.2|IPF7845.2|Contig4-3016_0027|orf6.3804|orf6.1719|CA2056|CaO19.2555	Protein abundance is affected by URA3 expression in the CAI-4 strain background; flucytosine induced; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	377858	378903	-	orf19.2557	377858	378903	1	378903	377858	378851	378024	SEC65	orf19.10089|IPF24769.1|IPF7847.1|Contig4-3016_0025|orf6.3806|CA2057|CaO19.2557|CaO19.10089	Functional homolog of S. cerevisiae Sec65p, which is a component of the protein-targeting Signal Recognition Particle (SRP); similar to mammalian Srp19; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	379107	380835	+	orf19.2558	379107	380835	1	379107	380835	379275	380723		orf19.10090|IPF24748.1|IPF7848.1|Contig4-3016_0024|orf6.3807|CA2058|CaO19.10090|CaO19.2558|IPF7848	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	380685	383685	-	orf19.2559	380685	383685	1	383685	380685	383139	380833	CDC4	orf19.10091|IPF24734.1|IPF7849.2|Contig4-3016_0022|orf6.3808|CA2059|CaO19.10091|CaO19.2559	F-box subunit of SCF(CDC4) ubiquitin ligase; functional homolog of S. cerevisiae Cdc4p; mutation or depletion causes hyperfilamentation; nonessential; Sol1p is a substrate of SCF-Cdc4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	384118	387635	-	orf19.2560	384118	387635	1	387635	384118	387582	384289	CDC60	orf19.10092|orf19.10094|IPF24782.1|IPF24722.1|IPF7853.2|IPF7856.2|Contig4-3016_0017|Contig4-3016_0020|Contig4-3016_0021|orf6.3809|orf6.3811|CA2060|CA2061|orf19.2562|CDC60B|CDC61.3f	Cytosolic leucyl tRNA synthetase; has conserved amino acid and ATP binding class I signature, tRNA binding, and proofreading motifs; likely essential for growth; interacts with benzoxaborole antifungals; similar to S. cerevisiae Cdc60p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	387723	390640	-	orf19.2563	387723	390640	1	390640	387723	390593	387846		orf19.10095|IPF24723.1|IPF7858.2|Contig4-3016_0015|orf6.3812|CA2062|PRP24|CaO19.10095|CaO19.2563|IPF7858	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	390664	391652	+	orf19.2564	390664	391652	1	390664	391652	390664	391527		orf19.10096|IPF24768.1|IPF7859.2|Contig4-3016_0014|orf6.3813|CA2063|CaO19.2564|CaO19.10096|IPF7859	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	391700	394929	+	orf19.2565	391700	394929	1	391700	394929	391753	394851		orf19.10097|IPF19597.2|IPF29077.1|Contig4-3016_0012|orf6.3814|orf6.640|CA0140|MDM1|CaO19.2565|MDM1.3|IPF19597.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	395308	396294	+	orf19.2568	395308	396294	1	395308	396294	395483	396193	IFU5	orf19.10100|YFL010C|YLR63|IPF19838.2|IPF19956.2|Contig4-3016_0009|orf6.4669|orf6.637|CA2679|CaO19.2568|IPF19956.1	Predicted membrane protein; estradiol-induced; increased transcription is associated with CDR1 and CDR2 overexpression or fluphenazine treatment; gene has putative drug-responsive regulatory site; similar to S. cerevisiae Wwm1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	396398	397099	+	orf19.2570	396398	397099	1	396398	397099	396477	396896	MCI4	orf19.10102|IPF24789.1|IPF2728.2|Contig4-3016_0007|orf6.4671|CA2680|CaO19.2570|CaO19.10102	Protein described as NADH-ubiquinone dehydrogenase; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	396903	398217	-	orf19.2571	396903	398217	1	398217	396903	397884	397252	SEC4	orf19.10103|IPF24779.1|IPF2730.1|Contig4-3016_0005|orf6.4672|CA2681|CaO19.10103|CaO19.2571	Small GTPase of Rab family; role in secretion, post-Golgi; possible C-terminal palmitoylation; downregulated on adherence to polystyrene; not regulated on white-opaque or yeast-hyphal switching; functional homolog of S. cerevisiae Sec4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	398559	400525	-	orf19.2573	398559	400525	1	400525	398559	400470	398692	FRS1	orf19.10105|IPF24745.1|IPF2731.2|Contig4-3016_0002|orf6.4674|CA2682|CaO19.2573|CaO19.10105	Protein similar to the beta subunit of S. cerevisiae phenylalanyl-tRNA synthetase; possible role in early cell wall biosynthesis; translation-related genes are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	400694	404316	-	orf19.2574	400694	404316	1	404316	400694	403453	400733		orf19.10106|IPF24725.1|IPF2734.2|orf6.4675|CA2683|CaO19.2574|CaO19.10106|IFU4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	401885	402022	+	ntar_1195	401885	402022	1	401885	402022					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	404431	405615	+	orf19.2575	404431	405615	1	404431	405615	404543	405502		orf19.10107|IPF24766.1|IPF2736.2|Contig4-2970_0001|orf6.4676|CA2684|CaO19.10107|CaO19.2575|IFU3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	405443	407958	-	orf19.2579	405443	407958	1	407958	405443	407914	405503		orf19.10111|IPF24730.1|IPF2741.2|Contig4-2970_0003|orf6.4680|CA2685|MSH4|CaO19.2579|CaO19.10111	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	408016	409180	-	orf19.2580	408016	409180	1	409180	408016	409030	408035	HST2	orf19.10112|IPF24762.1|IPF2743.2|Contig4-2970_0004|orf6.4681|CA2686|CaO19.2580|CaO19.10112	Putative histone deacetylase, involved in regulation of white-opaque switching; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	409241	410236	-	orf19.2581	409241	410236	1	410236	409241	410236	409241		orf19.10113|IPF18435.2|IPF2744.2|Contig4-2970_0006|orf6.4682|CA2688|CaO19.2581|CaO19.10113|IFU6.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chrR	410490	414046	+	orf19.2582	410490	414046	1	410490	414046	410669	413725		orf19.10114|IPF24816.1|IPF2746.2|Contig4-2970_0008|Contig4-2970_0009|orf6.4683|CA2689|CaO19.2582|CaO19.10114|IFU2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	414016	415971	-	orf19.2583	414016	415971	2	415971|414462	414547|414016	415971	414016		orf19.10115|IPF24751.1|IPF2749.2|Contig4-2970_0012|Contig4-2970_0013|orf6.4684|orf19.2582.1|PTR2|CA2691|CA2690|PTR2.exon2|IPF2747.1|PTR2.exon1	[NOT TRANSCRIBED?] Putative oligopeptide transporter [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	417074	417644	+	orf19.2583.1	417074	417644	1	417074	417644	417463	417588		IPF2751.1	Pseudogene; formerly an ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	417585	417839	-	orf19.2583.2	417585	417839	1	417839	417585	417839	417585		IPF24809.1|IPF2752.1	Pseudogene; formerly an ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	417907	418705	+	orf19.2584	417907	418705	2	417907|417980	417921|418705	417907	418705	OPT9	orf19.10116|IPF24775.1|IPF2753.1|Contig4-2970_0018|orf6.4685|OPT3|CA6204|psiOPT1	Probable pseudogene similar to fragments of OPT1 oligopeptide transporter gene; decreased expression in hyphae compared to yeast-form cells; transcriptionally induced upon phagocytosis by macrophage [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	418965	419665	-	orf19.2585	418965	419665	1	419665	418965	419555	418965			 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chrR	419892	420208	-	ntar_1196	419892	420208	1	420208	419892					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	420652	422288	-	orf19.2587	420652	422288	1	422288	420652	422258	420762	HNM3	orf19.10118|IPF2778.2|IPF2781.2|Contig4-2970_0020|Contig4-2970_0022|orf6.4112|CA2276|CaO19.2587|CaO19.10118	Predicted ORF in Assemblies 19, 20 and 21; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	421547	421763	+	ntar_1197	421547	421763	1	421547	421763					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	421916	422376	+	ntar_1198	421916	422376	1	421916	422376	422065	422376			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	422446	423187	-	orf19.2590	422446	423187	1	423187	422446	423120	422482		orf19.10121|IPF24778.1|IPF2776.2|Contig4-2970_0024|orf6.4108|CA2275|CaO19.10121|BIO4|CaO19.2590	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	423357	424869	+	orf19.2591	423357	424869	1	423357	424869	423370	424671		orf19.10122|IPF24754.1|IPF2774.2|Contig4-2970_0025|orf6.4107|CA2274|BIO31|CaO19.2591|CaO19.10122|BIO3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	425095	426364	-	orf19.2593	425095	426364	1	426364	425095	426350	425226	BIO2	orf19.10124|orf6.4105|IPF24757.1|IPF2771.2|Contig4-2821_0003|Contig4-2970_0027|CA2273|CaO19.10124|CaO19.2593	Protein described as biotin synthase; transcriptionally upregulated in high iron; transcription is downregulated in response to treatment with ciclopirox olamine; upregulated in clinical isolates from HIV+ patients with oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	427363	428545	+	orf19.2594	427363	428545	1	427363	428545	427492	428391		orf19.10125|orf19.10126|IPF24767.1|IPF19945.1|Contig4-2821_0006|orf6.4104|orf6.4103|CA2272|orf19.2595|CaO19.10125|RPA43|CaO19.2594	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	428368	430072	-	orf19.2597	428368	430072	1	430072	428368	429937	428531	MRS2	orf19.10128|IPF24752.1|IPF2765.2|Contig4-2821_0007|orf6.4101|CA2271|CaO19.10128|CaO19.2597	Putative magnesium ion transporter, mitochondrial; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	430166	431113	-	orf19.2598	430166	431113	2	431113|430962	431031|430166	431051	430303	VMA4	orf19.10129|IPF24776.1|IPF2763.1|Contig4-2821_0009|orf6.4100|CA2270	Transcription is regulated by Mig1p; caspofungin repressed; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	431327	432400	-	orf19.2599	431327	432400	1	432400	431327	432233	431379		orf19.10130|IPF24770.1|IPF2761.1|Contig4-2821_0010|orf6.4099|CA2269|CaO19.10130|CRC1|CaO19.2599|YOR100	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	433027	433315	+	ntar_1199	433027	433315	1	433027	433315					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	433115	435687	-	orf19.2600	433115	435687	1	435687	433115	435586	433229	SPC98	orf19.10131|IPF24726.1|IPF24736.1|IPF18497.1|IPF2757.2|Contig4-2821_0016|orf6.4098|CA2267|IFU1.5f	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle S/G2 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	435920	438028	-	orf19.2601	435920	438028	1	438028	435920	437760	436066	HEM1	orf19.10132|orf6.3598|IPF2755.3|IPF29053.1|Contig4-2821_0018|orf6.4097|CA2266|CaO19.2601|IPF2755.2	Protein described as 5-aminolevulinate synthase; transcriptionally regulated by iron; caspofungin repressed; expression greater in high iron; regulated by Ssn6p; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	440892	443243	-	orf19.2602	440892	443243	1	443243	440892	443243	440892	OPT1	orf19.10133|IPF24733.1|IPF14139.2|Contig4-1813_0003|Contig4-2970_0016|orf6.3597|CA1902|CaO19.2602|CaO19.10133	Oligopeptide transporter; transports 3-to-5-residue peptides; alleles are distinct, one has intron; not ABC or PTR type transporter; suppresses S. cerevisiae ptr2-2 mutant defects; induced by BSA or peptides; Stp3p, Hog1p regulated [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chrR	444934	446709	-	orf19.2604	444934	446709	1	446709	444934	446709	445213		orf19.10135|IPF24750.1|IPF14135.2|Contig4-1720_0004|orf6.3595|CA1901|CaO19.10135|CaO19.2604|IPF14135	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	447056	449309	+	orf19.2605	447056	449309	1	447056	449309	447156	449228		orf19.10136|IPF24740.1|IPF14133.2|Contig4-2304_0006|Contig4-2304_0007|orf6.3594|CA1900|CaO19.2605|PRK1|CaO19.10136|ARK1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	449280	452127	-	orf19.2606	449280	452127	1	452127	449280	451924	449423	HDA1	orf19.10137|IPF24729.1|IPF15480.2|Contig4-2304_0003|orf6.3593|CA1899|CaO19.2606|CaO19.10137	Histone deacetylase; regulates frequency of white-to-opaque switching, but not opaque-to-white switching; greater expression in white cells than opaque cells; has conserved deacetylation motif; inhibited by trichostatin-A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	452838	454072	+	orf19.2607	452838	454072	1	452838	454072	452963	453886		orf19.10138|IPF15672.2|IPF29058.1|Contig4-2025_0001|orf6.3592|orf6.4278|CA2392|PMU4|CaO19.2607|IPF15672|IPF15672.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	453895	455363	-	orf19.2608	453895	455363	1	455363	453895	455102	454023	ADH5	orf19.10139|IPF24761.1|IPF15671.2|Contig4-2025_0002|orf6.4277|CA2391|CaO19.10139|SAD1|CaO19.2608	Putative alcohol dehydrogenase; soluble protein in hyphae; expression is regulated upon white-opaque switching; fluconazole-induced; antigenic during murine systemic infection; regulated by Nrg1p, Tup1p; macrophage-downregulated protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	456557	456677	+	tl(aag)1	456557	456677	2	456557|456632	456593|456677				tL(AAG)1.2	tRNA-Leu predicted by tRNAscan-SE; has atypical G at position 32 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	456750	458466	-	orf19.2609	456750	458466	1	458466	456750	458440	456878	CET1	orf19.10140|IPF24749.1|IPF8499.1|Contig4-2859_0011|orf6.4276|CA2390|CaO19.10140|CaO19.2609	mRNA 5'-triphosphatase; large subunit of mRNA capping enzyme; positively regulates Ceg1p activity; functional homolog of S. cerevisiae Cet1p; Cet1p and Cgt1p form a 2:1 complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	458667	459443	-	orf19.2610	458667	459443	2	459443|459328	459385|458667	459418	458814		orf19.10141|IPF24787.1|IPF8500.2|Contig4-2859_0009|orf6.4275|CA2389|CaO19.2610|ARC2|CaO19.10141|IPF8500	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	459613	462420	+	orf19.2611	459613	462420	1	459613	462420	459676	462318	MCM6	orf19.10142|IPF24727.1|IPF8502.2|Contig4-2859_0007|orf6.4274|CA2388|CaO19.10142|CaO19.2611	Protein described as part of MCM DNA replication initiation complex; mRNA expression, peak at cell-cycle M/G1 phase; regulated by tyrosol and cell density; repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	462311	463173	-	orf19.2612	462311	463173	1	463173	462311	463126	462374		orf19.10143|IPF24773.1|IPF8504.2|Contig4-2859_0006|orf6.4273|CA2387|CaO19.2612|CaO19.10143|IPF8504	Putative transcription factor with zinc finger DNA-binding motif; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	463603	465196	+	orf19.2613	463603	465196	2	463603|463805	463723|465196	463715	464800	ECM4	orf19.10144|IPF24763.1|IPF8505.2|Contig4-2859_0005|orf6.4272|ECM41|CA2386|ECM41.3f|ECM41.3	Protein similar to S. cerevisiae Ecm4p; transcription is regulated by Nrg1p and Tup1p; induced in core stress response or in cyr1 or ras1 homozygous null mutant (yeast-form or hyphal cells); transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	465361	466405	+	orf19.2614	465361	466405	2	465361|465544	465469|466405	465463	466283	RSR1	orf19.10145|IPF24771.1|IPF8507.2|Contig4-2859_0002|orf6.4271|CA2385|RSR1.3	RAS-related protein; GTP/GDP cycling required for wild-type polar bud site selection, hyphal growth guidance; role in systemic virulence in mouse; geranylgeranylation predicted; suppresses S. cerevisiae cdc24-4 mutant heat sensitivity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	467097	469552	+	orf19.2615	467097	469552	1	467097	469552	467268	469325	MDL1	orf19.10146|IPF24739.1|IPF7801.2|Contig4-2761_0014|orf6.4270|CA2384|CaO19.10146|CaO19.2615	Putative mitochondrial, half-size MDR-subfamily ABC transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	469505	469784	-	ntar_1200	469505	469784	1	469784	469505					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	470002	470442	-	ntar_1201	470002	470442	1	470442	470002					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	470508	475094	+	orf19.2616	470508	475094	1	470508	475094	470546	475087	UGT51C1	orf19.10147|IPF24795.1|IPF7800.3|Contig4-2761_0001|orf6.1655|orf6.4269|CA0618|UGT51|CaO19.2616|IPF7800.2	UDP-glucose:sterol glucosyltransferase; enzyme of sterol glucoside (membrane-bound lipid) biosynthesis; has UDP-sugar binding domain; activity is UDP-glucose-specific in vitro; enzyme does not use UDP-mannose; Mig1p-regulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	474972	475144	-	ntar_1202	474972	475144	1	475144	474972					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	475581	477084	+	orf19.2618	475581	477084	1	475581	477084	475617	476846	MET2	orf19.10149|IPF24760.1|IPF7797.2|Contig4-2761_0004|orf6.1653|CA0617|CaO19.10149|CaO19.2618	Putative homoserine acetyltransferase; Gcn4p-regulated; macrophage/pseudohyphal-repressed; not greatly biofilm induced, in contrast to many sulfur amino acid metabolic genes; no human or murine homolog; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	477687	479522	+	orf19.2619	477687	479522	1	477687	479522	478042	479430	PHO113	orf19.11238|orf19.10150|orf6.4212|IPF24753.1|IPF7796.2|IPF23531.1|IPF28658.1|PHO11|Contig4-2761_0007|orf6.1652|CA0616|orf19.3754|PHO111|CaO19.2619|CaO19.10150	Protein described as a constitutive acid phosphatase; transcription is negatively regulated by Rim101p; DTT-extractable; N-glycosylated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	479560	482674	-	orf19.3753	479560	482674	1	482674	479560	482445	479692	SEF1	orf19.11237|IPF23521.1|IPF7790.2|Contig4-2761_0009|Contig4-2761_0013|orf6.4213|CA2346|CaO19.11237|CaO19.3753	Putative transcription factor with zinc cluster DNA-binding motif; transcription is negatively regulated by Sfu1p and positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	483873	485184	-	orf19.3752	483873	485184	1	485184	483873	485125	484040	RAD51	orf19.11236|IPF15096.2|IPF7787.2|Contig4-1795_0004|Contig4-1795_0005|orf6.4214|orf6.615|CA2347|CaO19.3752	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; slow growth and increased white-to-opaque switching frequency in null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	489927	493803	+	orf19.3751	489927	493803	1	489927	493803	490320	493304		orf19.11235|IPF23518.1|IPF12811.2|Contig4-2818_0016|orf6.4215|CA2348|CaO19.11235|CaO19.3751|IPF12811	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	493904	496679	-	orf19.3749	493904	496679	1	496679	493904	496621	493904	IFC3	IPF4737.2|IPF12812.3|Contig4-2818_0020|orf6.5478|OPT3|CA2349|OPT21|CaO19.3749|IPF12812.2	Oligopeptide transporter; transcriptionally induced upon phagocytosis by macrophage; induced by BSA or peptides; fluconazole-induced; upregulated by Rim101p at pH 8; virulence-group-correlated expression; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chrR	497850	498170	+	orf19.3748	497850	498170	1	497850	498170	497850	498170		IPF23545.1|orf6.46|orf6.5477|CaO19.3748	ORF Predicted by Annotation Working Group; orf19.3747 and orf19.3748 are short, overlapping ORFs in intergenic region between two oligopeptide transporter-encoding genes [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	499916	502705	-	orf19.3746	499916	502705	1	502705	499916	502705	499916	IFC1	orf19.11233|IPF23519.1|IPF4732.2|IPF4737.2|OPT2|Contig4-2422_0002|orf6.5478|CA3257|CA3258|CaO19.11231|OPT22|CaO19.3746|IFC2|orf6.5476	Oligopeptide transporter; transcriptionally induced upon phagocytosis by macrophage; macrophage/pseudohyphal-repressed after 16h; fluconazole-induced; virulence-group-correlated expression; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chrR	504591	507048	-	orf19.3744	504591	507048	1	507048	504591	507024	504787		orf19.11229|IPF4730.2|IPF28654.1|Contig4-3070_0001|orf6.5474|CA3256|CaO19.3744|IPF4730	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	507338	508544	-	orf19.3743	507338	508544	1	508544	507338	508478	507459		orf19.11228|IPF23535.1|IPF4729.2|Contig4-3070_0003|orf6.5473|CA3255|CaO19.3743|CaO19.11228|IPF4729	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	508625	509480	-	orf19.3742	508625	509480	1	509480	508625	509367	508642		orf19.11227|IPF4728.1|IPF19450.2|Contig4-3070_0005|orf6.5472|orf6.81|CA3254|CaO19.3742|IPF4728	Predicted ORF in Assemblies 19, 20 and 21; expression regulated during planktonic growth; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	510390	511421	+	orf19.3740	510390	511421	1	510390	511421	510509	511357	PGA23	orf19.11225|orf6.5470|IPF4724.1|IPF19822.2|Contig4-3070_0007|orf6.83|CA3253|PGR23|SLP99|CaO19.3740|IPF4724	Putative GPI-anchored protein of unknown function; transcription is negatively regulated by Rim101p; regulated by Cyr1p; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	511782	512291	+	orf19.3738	511782	512291	1	511782	512291	511782	512291	PGA22	orf19.11223|IPF23538.1|IPF4722.1|Contig4-3070_0008|orf6.5468|CA3252|CaO19.11223|CaO19.3738|IPF4722	[NOT TRANSCRIBED?] Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	512357	515002	-	orf19.3737	512357	515002	1	515002	512357	514916	512535		orf19.11222|IPF4721|IPF23523.1|IPF4721.2|Contig4-3070_0009|orf6.5467|CA3251|CaO19.11222|CaO19.3737	Predicted ORF in Assemblies 19, 20 and 21; transcription is downregulated in response to treatment with ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	515706	516217	+	ntar_1203	515706	516217	1	515706	516217	515706	515828			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	515749	515822	-	tv(aac)3	515749	515822	1	515822	515749				tV(AAC)3.2	tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	515920	516275	-	ntar_1204	515920	516275	1	516275	515920					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	516524	517370	+	ntar_1423	516524	517370	2	516524|516775	516552|517370	516867	517160			 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	516764	517873	-	orf19.3736	516764	517873	1	517873	516764	517873	516764	KAR4	orf19.11221|IPF23534.1|IPF4719.2|Contig4-3070_0014|orf6.1096|orf6.5466|CA0307|CaO19.3736|IPF4719	Protein similar to S. cerevisiae Kar4p, which has a role in karyogamy; transcription is opaque-specific, a-specific, and induced by alpha factor [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	518256	519583	+	orf19.3735	518256	519583	2	518256|518435	518363|519583	518256	519583		orf19.11220|IPF4716.2|IPF19050.1|Contig4-3070_0017|orf6.1097|orf6.5465|CA3250|CaO19.3735|IPF4716	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	519843	523087	-	orf19.3734	519843	523087	1	523087	519843	522632	520053	GEF2	orf19.11219|IPF9175.2|IPF4715.3|Contig4-3070_0020|orf6.1098|orf6.5464|CA3249|GEF12|CaO19.3734|GEF2.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	525346	526951	+	orf19.3733	525346	526951	1	525346	526951	525552	526790	IDP2	orf19.11218|IPF9177.2|Contig4-3070_0023|orf6.1691|orf6.5462|CA0643|CaO19.3733	Putative isocitrate dehydrogenase; expression is regulated upon white-opaque switching; shows colony morphology-related gene regulation by Ssn6p; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	526860	527029	-	ntar_1205	526860	527029	1	527029	526860					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	527495	528813	+	orf19.3732	527495	528813	1	527495	528813	527711	528637	ERG25	orf19.11216|ERG251|IPF23536.1|IPF9179.2|Contig4-3070_0024|orf6.1690|CA0642|CaO19.11216|CaO19.3732	Putative C-4 methyl sterol oxidase with role in C4-demethylation of ergosterol biosynthesis intermediates, based on similarity to S. cerevisiae Erg25p; fluconazole-induced; upregulated in biofilm and in azole-resistant strain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	528697	529351	-	orf19.3730	528697	529351	1	529351	528697	529241	528834		orf19.11214|orf6.1688|IPF7347.1|IPF9181.1|Contig4-3070_0026|orf6.1829|CA0727|CaO19.3730|IPF7347	Protein similar to S. cerevisiae Kre27p, which has a role in resistance to killer toxin; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	529900	533305	+	orf19.3728	529900	533305	2	529900|533163	532611|533305	530049	533305		orf19.11212|IPF7345.2|IPF28652.1|Contig4-3070_0030|Contig4-3070_0032|orf6.1687|orf6.1831|orf6.896|CA0728|IPF7345	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=A scenario_last_exon=Z]
Ca21chrR	533720	535175	+	orf19.3727	533720	535175	1	533720	535175	533720	535105	PHO112	orf19.11211|orf6.897|IPF23530.1|IPF7341.2|PHO3|PHO11|PHO12|Contig4-3070_0034|orf6.1832|CaO19.3727	Protein described as a constitutive acid phosphatase; transcription is negatively regulated by Rim101p; DTT-extractable; N-glycosylated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	535337	538515	+	orf19.3726	535337	538515	1	535337	538515	535398	538388		orf19.11210|IPF7338.2|IPF19851.2|Contig4-3070_0035|orf6.1833|orf6.898|CA0729|CaO19.3726|IPF7338	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	538694	539751	+	orf19.3724	538694	539751	1	538694	539751	538767	539576		orf19.11208|IPF7334.1|IPF28659.1|Contig4-3070_0036|orf6.1835|CA0730|CaO19.3724|IPF7334	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	539601	542257	-	orf19.3722	539601	542257	1	542257	539601	542237	539688		orf19.11206|IPF7333.3|IPF28653.1|Contig4-3070_0037|orf6.1837|CA0731|CaO19.3722|FAP1|IPF7333|IPF7333.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	542276	543489	+	orf19.3721	542276	543489	1	542276	543489	542602	542955		orf19.11205|IPF23542.1|IPF28664.1|CaO19.11205|CaO19.3721	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	542672	542984	-	ntar_1206	542672	542984	1	542984	542672					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	543409	543887	-	ntar_1207	543409	543887	1	543887	543409	543878	543702			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	544142	544407	+	ntar_1208	544142	544407	1	544142	544407					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	544662	546964	+	orf19.3720	544662	546964	1	544662	546964	544684	546849		orf19.11204|IPF23525.1|IPF18822.1|Contig4-2685_0003|orf6.2193|CA0961|CaO19.3720|CaO19.11204|IPF18822	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	547238	547522	+	ntar_1209	547238	547522	1	547238	547522					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	548260	548730	+	orf19.3719	548260	548730	1	548260	548730	548260	548730		orf19.11203|IPF27517.1|IPF23537.1|IPF12067.2|Contig4-2685_0006|Contig4-2818_0022|orf6.1363|orf6.2194|orf19.2291|CaO19.3719|CaO19.11203	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	549251	552193	+	orf19.176	549251	552193	1	549251	552193	549295	552009	OPT4	orf19.11202|orf19.7809|IPF27144.1|IPF18680.1|IPF12066.2|IPF23532.1|IPF18818.2|orf6.2912|orf6.1364|orf6.4217|orf6.5478|orf6.2195|CA0442|orf19.3718|orf19.2292|OPT232|CaO19.176|CaO19.7809	Oligopeptide transporter; detected at germ tube plasma membrane by mass spectrometry; transcriptionally induced upon phagocytosis by macrophage; fungal-specific (no human or murine homolog); merged with orf19.2292 in Assembly 20 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	552413	554558	+	orf19.175	552413	554558	1	552413	554558	552466	554016		orf19.7808|IPF27142.1|IPF17296.2|IPF12064.1|Contig4-2484_0002|Contig4-2484_0004|orf6.2911|orf6.1365|orf6.1366|CA1419|orf19.2293|orf19.2294|CaO19.7808|CaO19.175|IPF17296	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	553464	553701	-	ntar_1210	553464	553701	1	553701	553464					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	553804	554069	-	ntar_1211	553804	554069	1	554069	553804					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	554735	554995	+	ntar_1212	554735	554995	1	554735	554995	554735	554911			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	554809	555240	-	ntar_1213	554809	555240	1	555240	554809	555240	555100			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	555188	555595	+	ntar_1214	555188	555595	1	555188	555595	555188	555322			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	555291	556047	-	ntar_1215	555291	556047	1	556047	555291					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	556261	556450	-	ntar_1216	556261	556450	1	556450	556261					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	556918	560483	+	orf19.173	556918	560483	1	556918	560483	556961	560263		orf19.7806|orf19.7807|IPF12061.3|IPF27145.1|IPF19915.1|IPF16124.2|Contig4-2440_0003|orf6.2910|orf6.2909|orf6.51|CA1418|CA0007|orf19.174|IPF12061.3f|IPF16124	Putative transcription factor with zinc finger DNA-binding motif; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	560769	561492	+	orf19.172	560769	561492	1	560769	561492	560836	561231	RPC19	orf19.7805|IPF27146.1|IPF16126.1|Contig4-2440_0002|orf6.2908|CA1417|CaO19.172|CaO19.7805|IPF16126	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	561888	564836	+	orf19.171	561888	564836	2	561888|564311	563247|564836	561933	564684	DBP2	orf19.7803|orf19.7804|IPF27143.1|IPF17362.2|Contig4-1796_0002|Contig4-2440_0001|orf6.2906|orf6.629|orf6.2907|CA1415|orf19.170|CA1416|DBP2.exon1|DBP2.exon2|IPF18681.1	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	564976	565425	-	ntar_1217	564976	565425	1	565425	564976					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	565458	568840	+	orf19.169	565458	568840	1	565458	568840	566055	568721	CHO2	orf19.7802|IPF19595.2|IPF19594.1|Contig4-2571_0007|orf6.2905|orf6.628|CA1414|CaO19.169	Putative phosphatidyl-ethanolamine N-methyltransferase; fungal-specific (no human or murine homolog); amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	568728	569778	-	orf19.168	568728	569778	1	569778	568728	569697	568822		orf19.7801|IPF14111.3|IPF16693.2|Contig4-2571_0006|orf6.1406|orf6.2904|CA1413|MTR3|CaO19.168	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	569940	573138	-	orf19.166	569940	573138	1	573138	569940	573050	570078	ASG1	orf19.7800|IPF14113.2|IPF29937.1|IPF18682.2|Contig4-2571_0004|orf6.1405|orf6.2902|orf6.2903|CA0465|CA6313|orf19.167|IPF14113.5f|IPF14113	Predicted zinc-finger protein of unknown function; has similarity to S. cerevisiae Asg1p, which is a proposed transcription factor of the Gal4p family [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	574357	576156	+	ntar_1218	574357	576156	1	574357	576156	574972	575286			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	574513	576129	-	orf19.164	574513	576129	1	576129	574513	575931	574726		orf19.7798|IPF14116.2|IPF10909.2|Contig4-2571_0002|orf6.1403|orf6.157|CA0464|CaO19.164|IPF14116	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	576925	578165	+	orf19.163	576925	578165	1	576925	578165	576987	577937		orf19.7797|orf19.10333|IPF18979.2|IPF10907.2|IPF24497.1|IPF18946.1|orf6.156|orf6.1523|CA0463|CA0536|orf19.2815|IPF18979.5eoc|IPF18979|IPF18979.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	577998	581285	-	orf19.2818	577998	581285	1	581285	577998	581285	578073		orf19.10336|IPF24524.1|IPF19698.1|Contig4-2405_0001|Contig4-2405_0002|orf6.1526|CA0537|CaO19.10336|PRP16|CaO19.2818	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	581281	582010	+	orf19.2819	581281	582010	1	581281	582010	581337	581990		orf19.10337|IPF24499.1|IPF10901.2|Contig4-2405_0004|orf6.1527|CA0538|CaO19.2819|CaO19.10337|IPF10901	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	581772	583875	-	orf19.2820	581772	583875	1	583875	581772	583786	582056		orf19.10338|IPF24485.1|IPF10900.2|Contig4-2405_0005|Contig4-2405_0006|orf6.1528|orf6.2208|CA0539|CaO19.2820|NUP57	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	583923	585070	-	orf19.2821	583923	585070	1	585070	583923	584978	584451		orf19.10339|IPF24508.1|IPF10896.2|Contig4-2405_0008|orf6.1529|orf6.2209|CA0540|CaO19.2821|CaO19.10339|IPF10896	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	585228	586203	-	orf19.2822	585228	586203	1	586203	585228	586101	585256		orf19.10340|IPF10894.2|IPF10895.3|orf6.1530|orf6.2210|CA0970|CaO19.2822|COG2|IPF10894	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	599026	602257	+	orf19.2823	599026	602257	1	599026	602257	600293	602095	RFG1	orf19.10341|orf6.1681|IPF14334.2|orf6.1166|orf6.1680|ROX1|CA6270|CA0346|orf19.2824|RFG1.5f	Transcriptional regulator of filamentous growth and hyphal genes; acts in Tup1p-dependent and -independent pathways; binds DNA; has HMG domain; not transcriptionally regulated by oxygen or serum; not responsible for hypoxic repression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	603357	603724	+	ntar_1219	603357	603724	1	603357	603724	603449	603598			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	608393	608708	+	ntar_1220	608393	608708	1	608393	608708					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	608848	610601	-	orf19.2825	608848	610601	1	610601	608848	610363	609134		orf19.10342|IPF10974.2|IPF16047.1|Contig4-1745_0001|Contig4-1745_0002|Contig4-2642_0009|orf6.1251|orf6.1898|CA0381|CaO19.2825|IPF16047	Predicted ORF in Assemblies 19, 20 and 21; a-specific transcription [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	610954	612397	+	ntar_1222	610954	612397	1	610954	612397	610954	611190			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	611059	611518	-	ntar_1221	611059	611518	1	611518	611059	611512	611327			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	611877	612047	-	ntar_1223	611877	612047	1	612047	611877					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	612406	612855	-	ntar_1224	612406	612855	1	612855	612406	612565	612407			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	612995	614742	-	orf19.2826	612995	614742	1	614742	612995	614526	613126		orf19.10344|IPF24489.1|IPF10967.2|Contig4-2642_0003|orf6.1900|CA0769|CaO19.10344|CaO19.2826|IPF10967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	613391	613653	+	ntar_1225	613391	613653	1	613391	613653	613418	613615			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	615667	618515	+	orf19.2827	615667	618515	1	615667	618515	615887	618253		orf19.10345|IPF10963.2|IPF28963.1|Contig4-1774_0003|orf6.1901|CA0770|CaO19.10345|TID3|CaO19.2827|IPF10963	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	618561	619846	+	orf19.2828	618561	619846	1	618561	619846	618846	619694		orf19.10346|IPF24500.1|IPF16925.2|Contig4-1817_0001|orf6.4489|CA2543|CaO19.2828|ALF1|IPF16925	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	619857	620546	+	orf19.2829	619857	620546	1	619857	620546	620009	620392		orf19.10347|IPF24510.1|IPF16924.2|Contig4-1817_0003|orf6.4490|CA2544|CaO19.10347|CaO19.2829|IPF16924	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	620741	622595	+	orf19.2830	620741	622595	1	620741	622595	620821	622470	RRP9	orf19.10348|IPF24486.1|IPF15036.2|Contig4-2090_0002|orf6.4491|CA2545|CaO19.10348|CaO19.2830	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	622318	623661	-	orf19.2831	622318	623661	1	623661	622318	623532	622663	RPC31	orf19.10349|IPF14908.2|IPF15034.1|Contig4-2090_0003|orf6.4492|orf6.759|CA2546|CA0283|CaO19.10349|CaO19.2831|CA0024|RPC31.5eoc|IPF14908.1|CA0174|MDN1|IPF11182.3eoc|IPF11182.2	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; induced during infection of murine kidney, compared to growth in vitro; has murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	623872	624686	-	ntar_1226	623872	624686	1	624686	623872					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	626345	626738	+	ntar_1227	626345	626738	1	626345	626738					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	626600	626853	-	ntar_1228	626600	626853	1	626853	626600					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	627224	629598	+	orf19.2832	627224	629598	1	627224	629598	627521	629500	INN1	orf19.10350|IPF24482.1|IPF14911.2|Contig4-2142_0001|Contig4-2770_0015|orf6.4493|CA2547|CaO19.2832|IPF14911	Protein with similarity to S. cerevisiae Inn1p, which is an essential protein of the contractile actomyosin ring required for ingression of the plasma membrane into the bud neck during cytokinesis; contains a C2 membrane targeting domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	629548	630901	-	orf19.2833	629548	630901	1	630901	629548	630659	630066	PGA34	orf19.10351|IPF24503.1|IPF9101.2|Contig4-2770_0002|orf6.4494|CA2548|CaO19.10351|CaO19.2833|IPF9101	Putative GPI-anchored protein of unknown function; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	632514	632969	+	ntar_1229	632514	632969	1	632514	632969					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	632870	634581	-	orf19.2834	632870	634581	1	634581	632870	634439	632997	RPD3	orf19.10352|IPF24488.1|IPF9100.2|Contig4-2770_0006|orf6.4495|CA2549|CaO19.10352|RPD32|CaO19.2834|RPD31	Histone deacetylase; regulates frequency of white-to-opaque and opaque-to-white switching; greater expression in white cells than opaque cells; has conserved deacetylation motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	633246	633408	+	ntar_1230	633246	633408	1	633246	633408					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	633513	634169	+	ntar_1231	633513	634169	1	633513	634169					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	634761	636194	-	orf19.2835	634761	636194	1	636194	634761	636143	634977		orf19.10353|IPF24490.1|IPF9099.2|Contig4-2770_0009|orf6.4496|CA2550|AOS1|CaO19.2835|CaO19.10353|IPF9099	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	636873	637364	+	orf19.2836	636873	637364	1	636873	637364	636873	637364		orf19.10354|IPF24505.1|IPF9098.1|Contig4-2770_0010|orf6.4497|CA2551|CaO19.10354|CaO19.2836|IPF9098	Protein with similarity to carbonic anhydrases; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	637192	638698	-	orf19.2837	637192	638698	1	638698	637192	638526	637555	ALG5	orf19.10355|IPF24493.1|IPF9097.2|Contig4-2770_0011|orf6.4498|CA2552|CaO19.2837|CaO19.10355	Putative glucosyltransferase involved in cell wall mannan biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	638896	641346	-	orf19.2838	638896	641346	1	641346	638896	641346	638896		orf19.10356|IPF24480.1|IPF9096.1|Contig4-2770_0012|orf6.4499|CA2553|CaO19.2838|CaO19.10356|IPF9096	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	638913	640340	+	ntar_1232	638913	640340	1	638913	640340	639807	639992			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	641823	643557	+	orf19.2839	641823	643557	1	641823	643557	641823	643490	CIRT4B	orf19.10357|IPF15077.2|IPF9095.1|Contig4-2083_0001|Contig4-2770_0014|orf6.1773|orf6.4500|CA2554|CTN3|CaO19.2839|Cirt4|CA0691|Cirt4a|IPF15077.1|Cirt4b	Decreased transcription is observed in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	644253	646239	+	orf19.2841	644253	646239	1	644253	646239	644428	646110	PGM2	orf19.10359|IPF15073.2|IPF28967.1|Contig4-2083_0003|orf6.1775|CA0692|CaO19.2841	Protein not essential for viability; similar to S. cerevisiae Pgm2p, which is phosphoglucomutase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	645470	645953	-	ntar_1233	645470	645953	1	645953	645470					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	646107	646265	-	ntar_1234	646107	646265	1	646265	646107					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	646604	647264	+	ntar_1235	646604	647264	1	646604	647264	646680	647060			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	647252	649813	-	orf19.2842	647252	649813	1	649813	647252	649544	647412	GZF3	orf19.10361|IPF18898.1|IPF13959.2|Contig4-2206_0005|Contig4-2206_0007|orf6.1777|orf6.4936|CA2865|DAL80|CaO19.2842	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	650185	650567	-	ntar_1236	650185	650567	1	650567	650185					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	650673	650826	-	ntar_1237	650673	650826	1	650826	650673					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	653726	654778	+	orf19.2843	653726	654778	1	653726	654778	653856	654452	RHO1	orf19.10362|IPF24501.1|IPF11690.2|Contig4-2293_0002|Contig4-3058_0012|orf6.4937|CA2866|CaO19.2843|CaO19.10362	Small GTPase of Rho family; regulates beta-1,3-glucan synthesis activity and binds Gsc1p; essential; expected to be geranylgeranylated by geranylgeranyltransferase type I [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	655008	657778	+	orf19.2844	655008	657778	1	655008	657778	655168	657654		orf19.10363|IPF24477.1|IPF11688.2|Contig4-2293_0001|orf6.4938|CA2867|CaO19.2844|APL4|CaO19.10363|IPF11688	Predicted ORF in Assemblies 19, 20 and 21; induced in core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	656851	657398	-	ntar_1238	656851	657398	1	657398	656851	657374	656916			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	657825	658947	+	orf19.2846	657825	658947	1	657825	658947	658232	658645		orf19.10365|IPF24513.1|IPF20118.1|Contig4-2393_0002|orf6.4940|CA2868|CaO19.10365|CaO19.2846|IPF20118	Predicted ORF in Assemblies 19, 20 and 21; induced in core caspofungin response; transcription regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	658330	658509	-	ntar_1239	658330	658509	1	658509	658330					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	658745	660716	-	orf19.2847	658745	660716	1	660716	658745	660647	658860		orf19.10366|IPF17922.3|IPF15457.2|Contig4-2393_0003|orf6.186|orf6.4941|CA2869|RPC82|CaO19.2847	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	661108	661899	+	orf19.2847.1	661108	661899	1	661108	661899	661446	661631		IPF17923.2|IPF17924.1|Contig4-2393_0004|CA2870|OPT2.53f	Pseudogene; formerly an ORF Predicted by Annotation Working Group that was subsequently removed from Assembly 20 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	664536	667049	+	orf19.2848	664536	667049	1	664536	667049	664679	666964		orf19.10367|IPF16560.2|IPF10707.2|orf6.4942|orf6.525|CA2872|CaO19.2848|APG13	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	667589	668752	-	orf19.2849	667589	668752	1	668752	667589	668605	667784	AQY1	orf19.10368|IPF24496.1|IPF10705.1|Contig4-2389_0006|orf6.4943|CA2873|CaO19.2849	Aquaporin water channel; mutant has increased resistance to osmotic shock; required for wild-type tolerance of freezing; not required for virulence in a mouse model of systemic infection; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	672862	678861	+	orf19.2850	672862	678861	1	672862	678861	672973	678729		orf19.10369|IPF17450.3|IPF10699.3|Contig4-2389_0003|orf6.1274|orf6.3280|orf6.4944|CA0392|CaO19.2850|IPF17450|CA1671|IPF11391|IPF11391.2	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	678731	680154	-	orf19.2851	678731	680154	1	680154	678731	679969	678890		orf19.10370|IPF24491.1|IPF11392.2|Contig4-2764_0012|orf6.3279|CA1670|CaO19.2851|CaO19.10370|IPF11392	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	680527	681246	-	orf19.2852	680527	681246	1	681246	680527	681188	680607		orf19.10371|IPF24502.1|IPF11393.2|Contig4-2764_0007|orf6.3278|CA1669|MRP21|CaO19.10371|CaO19.2852|IPF11393	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	681416	682646	+	orf19.2853	681416	682646	1	681416	682646	681673	682536		orf19.10372|IPF24495.1|IPF11396.1|Contig4-2764_0006|orf6.3277|CA1668|CaO19.2853|CaO19.10372|IPF11396	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	682526	685278	-	orf19.2857	682526	685278	1	685278	682526	685210	682679		orf19.10376|IPF24479.1|IPF11402.2|Contig4-2764_0003|Contig4-2764_0004|orf6.3273|CA1667|SSL2|CaO19.10376|CaO19.2857	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	685457	686858	-	orf19.2859	685457	686858	1	686858	685457	686858	685572	SRP40	orf19.10377|IPF15769.2|IPF19740.1|Contig4-2764_0002|orf6.3271|orf6.730|CA1666|CaO19.2859	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	686889	688194	-	orf19.2862	686889	688194	1	688194	686889	688029	687001	RIB1	orf19.10380|IPF15765.1|IPF18635.1|Contig4-2764_0001|orf6.3268|orf6.733|CA1665|CaO19.2862	Putative GTP cyclohydrolase II; enzyme of riboflavin biosynthesis; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	689539	690300	-	orf19.2863	689539	690300	1	690300	689539	690263	689763		orf19.10381|IPF19166.2|IPF7313.2|Contig4-2091_0004|orf6.3267|orf6.734|CaO19.2863	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	690340	691106	-	orf19.2863.1	690340	691106	2	691106|690910	690970|690340	691067	690460		IPF24509.1|IPF7312.2|Contig4-2091_0003|CA1664|ERV1.3f|ERV1.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	691220	692174	-	orf19.2426	691220	692174	1	692174	691220	692173	691391		orf19.9964|orf19.10382|IPF24925.1|IPF17722.2|IPF24494.1|IPF7309.1|Contig4-2091_0001|orf6.5167|orf6.3266|CA1663|orf19.2864|CaO19.9964|CaO19.2426	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	692489	693534	-	orf19.2864.1	692489	693534	2	693534|693134	693486|692489	693534	692734	RPL28	IPF24932.1|IPF29116.1|IPF7308.2|Contig4-1322_0001|CA6203|orf19.2425.2	Putative ribosomal protein; Plc1p-regulated; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	692539	692684	+	ntar_1240	692539	692684	1	692539	692684					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	693813	695421	-	orf19.2425	693813	695421	1	695421	693813	695366	693876	HGT18	orf19.9963|orf19.10383|IPF24913.1|IPF7306.2|IPF24492.1|IPF18637.1|Contig4-1322_0003|Contig4-2445_0001|orf6.5168|orf6.3265|CA3040|orf19.2865|CaO19.2425|CaO19.9963|IPF7306	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	694026	694350	+	ntar_1241	694026	694350	1	694026	694350	694171	694350			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	695543	697640	-	orf19.2423	695543	697640	2	697640|697345	697445|695543	697519	695735	ZCF11	orf19.9961|YBR239c|IPF24910.1|IPF7303.2|Contig4-2445_0002|orf6.5170|CA3041|IPF7303	Putative DNA-binding transcription factor with a zinc cluster domain, required for wild-type filamentous growth; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	698377	699635	+	orf19.2422	698377	699635	1	698377	699635	698444	699553	ARC1	orf19.9960|IPF24918.1|IPF7302.2|Contig4-2445_0005|orf6.5171|CA3042|CaO19.9960|CaO19.2422	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	699778	701113	+	orf19.2419	699778	701113	1	699778	701113	699798	700979		orf19.9957|IPF24917.1|IPF7299.2|Contig4-2445_0006|Contig4-2529_0007|orf6.5174|CA3043|DOM34|CaO19.2419|CaO19.9957	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	700878	701613	-	orf19.2418	700878	701613	1	701613	700878	701577	701002		orf19.9956|IPF24930.1|IPF7298.2|Contig4-2445_0007|Contig4-2529_0006|orf6.5175|CA3044|CaO19.2418|CaO19.9956|IPF7298	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	701679	702370	-	orf19.2416.1	701679	702370	2	702370|702259	702327|701679	702329	701831	MLC1	IPF24934.1|IPF7297.1|Contig4-2529_0004|CA3045|IPF7297.3	Protein with microtubule-dependent localization to the Spitzenkorper, also localizes to cytokinetic ring in hyphae; cell-cycle dependent localization to bud tip (polarisome) and bud neck in yeast and pseudohyphal cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	702805	706204	+	orf19.2417	702805	706204	1	702805	706204	702960	706181	SMC5	orf19.9955|IPF24940.1|IPF7295.2|Contig4-2529_0002|Contig4-2529_0003|orf6.5176|YOL034W|CA3046|CaO19.9955|CaO19.2417|IPF7295	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Yol034wp, which is involved in DNA repair; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	706356	707979	+	orf19.2415	706356	707979	1	706356	707979	706386	707915		orf19.9953|IPF7294.2|IPF14995.2|Contig4-2529_0001|orf6.39|orf6.5178|CA0004|CaO19.2415|MSE1|MSE2|CA3047	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	708028	709186	+	orf19.2414	708028	709186	1	708028	709186	708148	709116		orf19.9952|IPF24922.1|IPF14994.2|Contig4-2124_0007|orf6.40|orf6.5179|CA0005|CaO19.2414|IPF14994	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	709350	710205	+	orf19.2412	709350	710205	1	709350	710205	709563	709997		orf19.9950|IPF14991.1|IPF29117.1|Contig4-2124_0004|orf6.5181|CA3048|CaO19.9950|VPS55|CaO19.2412|IPF14991	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	710140	711041	-	orf19.2411	710140	711041	1	711041	710140	710988	710188		orf19.9949|IPF14990.2|IPF29114.1|Contig4-2124_0003|orf6.5182|CA3049|CaO19.2411|IPF14990	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	711265	714211	+	orf19.2410	711265	714211	1	711265	714211	711423	714110	SYS3	orf19.9948|IPF13042|IPF13042.2|IPF29110.1|Contig4-2486_0006|orf6.5183|CA3050|IMH1|CaO19.2410	Protein similar to S. cerevisiae Sys3p; putative role in endosome-Golgi vesicle docking; upregulated in biofilm; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	714227	715156	+	orf19.2408	714227	715156	1	714227	715156	714287	715114		orf19.9946|IPF24924.1|IPF13043.2|Contig4-2486_0005|orf6.5185|CA3051|CaO19.9946|CaO19.2408|IPF13043	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	715340	717200	+	orf19.2407	715340	717200	1	715340	717200	715388	717124	DPS1-1	orf19.9945|IPF13045.2|IPF29111.1|DPS1|Contig4-2486_0004|orf6.5186|CA3052|CaO19.2407|CaO19.9945	Putative tRNA-Asp synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	717295	718701	+	orf19.2406	717295	718701	1	717295	718701	717483	718604		orf19.9944|IPF13046.2|IPF19191.2|Contig4-2486_0003|orf6.5187|orf6.667|CA3053|GTR2|CaO19.2406	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	718813	719056	-	snrnau1	718813	719056	1	719056	718813	718997	718863			Highly conserved U1 small nuclear RNA involved in splicing; ortholog of S. cerevisiae SNR19 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	719160	721600	-	orf19.2404	719160	721600	1	721600	719160	721531	719192		orf19.9943|IPF24915.1|IPF14929.3|Contig4-2486_0001|orf6.5188|orf6.564|orf6.665|CA0148|POP1|CaO19.2404|IPF14929.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	721660	722493	-	orf19.2402	721660	722493	1	722493	721660	722431	721751	SSU72	orf19.9939|IPF14932.1|IPF29115.1|Contig4-1536_0001|orf6.562|CA0114|CaO19.2402	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	722552	724005	-	orf19.2401	722552	724005	1	724005	722552	723935	722595		orf19.9938|IPF14934.1|IPF29112.1|Contig4-1536_0003|Contig4-1537_0003|orf6.561|CA0113|CaO19.2401|ATG4|AUT2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	722682	722909	+	ntar_1242	722682	722909	1	722682	722909					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	724172	726432	+	orf19.2400	724172	726432	1	724172	726432	724234	726351		orf19.9937|IPF24907.1|IPF15232.2|Contig4-1537_0001|Contig4-2658_0009|orf6.3673|orf6.559|orf6.560|CA1960|CaO19.2400|IPF15232|IPF15232.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	726361	728290	-	orf19.2399	726361	728290	1	728290	726361	728183	726438		orf19.9935|orf6.229|IPF14284.2|IPF15229.2|Contig4-2658_0008|orf6.3674|CA1961|CaO19.2399|JJJ1|IPF14284	Putative transcription factor with zinc finger DNA-binding motif; similar to bacterial DnaJ; transcriptionally regulated by iron; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	728411	729874	-	orf19.2398	728411	729874	1	729874	728411	729390	728527		orf19.9934|IPF15228.3|IPF14285.2|Contig4-2658_0006|orf6.3675|CA1962|CaO19.2398|CaO19.9934|IPF14285	Predicted ORF in Assemblies 19, 20 and 21; possible increased transcription in an azole-resistant strain that overexpresses CDR1 and CDR2; possibly transcriptionally regulated by Tac1p; induced by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	730036	730625	+	ntar_1243	730036	730625	1	730036	730625					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	731627	733082	+	orf19.2397.3	731627	733082	2	731627|732117	732051|733082	731817	732898		IPF16843.2|IPF29123.1|Contig4-2658_0002|Contig4-2658_0003|orf19.2397.2|CA0026|IPF16843	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	734289	736955	+	orf19.2397	734289	736955	1	734289	736955	734584	736089		orf19.9933|IPF24912.1|IPF14040.2|orf6.3676|CA1963|CaO19.2397|VHT1|CaO19.9933|IPF14040	Predicted membrane transporter, member of the anion:cation symporter (ACS) family, major facilitator superfamily (MFS); amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	737000	738432	+	orf19.2396	737000	738432	1	737000	738432	737211	738287	IFR2	orf19.9932|IPF24919.1|IPF14036.2|Contig4-2106_0003|orf6.3677|CA1964|FZD3|CaO19.2396|CaO19.9932	Increased transcription is observed upon benomyl treatment; transcription is upregulated in response to treatment with ciclopirox olamine, alpha pheromone; regulated by oxidative stress (via Cap1p) and osmotic stress (via Hog1p) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	738489	740051	-	orf19.2395	738489	740051	1	740051	738489	740051	738489	IME2	orf19.9931|IPF24911.1|IPF14035.2|Contig4-2106_0002|orf6.3678|CA1965|CaO19.9931|CaO19.2395|IPF14035	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	740777	741862	-	orf19.2394	740777	741862	1	741862	740777	741862	740777		orf19.9930|IPF18548.2|IPF11494.2|Contig4-2991_0002|orf6.3679|orf6.3854|CA1966|FZD1|CaO19.2394|IFR4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	742180	743855	-	orf19.2393	742180	743855	3	743855|743077|742937	743136|743040|742180	743782	742231		orf19.9929|IPF11493.2|IPF18580.2|Contig4-2991_0004|orf6.3855|CA2094|CaO19.9929|CaO19.2393|IPF11493	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	743132	743782	-	orf19.2392	743132	743782	1	743782	743132	743782	743132		orf19.9928|IPF11492|IPF24928.1|IPF11492.2|Contig4-2991_0005|orf6.3856|CA2095|CaO19.9928|CaO19.2392	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	744004	745268	+	orf19.2391	744004	745268	1	744004	745268	744086	745159		orf19.9927|IPF24921.1|IPF11491.2|Contig4-2991_0006|orf6.3857|CA2096|CaO19.2391|CaO19.9927|IPF11491	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	745108	746277	-	orf19.2389	745108	746277	1	746277	745108	746253	745189		orf19.9925|IPF24920.1|IPF11489.2|Contig4-2991_0007|orf6.3859|CA2097|CaO19.9925|SLD2|CaO19.2389|IPF11489	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	746404	748244	-	orf19.2387	746404	748244	1	748244	746404	748211	746469		orf19.9923|IPF24906.1|IPF11487.2|Contig4-2991_0009|orf6.3861|YER087W|CA2098|CaO19.9923|CaO19.2387|IPF11487	Putative tRNA-Pro synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	748415	749356	+	orf19.2386	748415	749356	1	748415	749356	748452	749195		orf19.9922|IPF24927.1|IPF11484.2|Contig4-2991_0011|orf6.3862|CA2099|CaO19.9922|CaO19.2386|IPF11484	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	749148	750124	-	orf19.2385	749148	750124	1	750124	749148	750070	749204	KTI12	orf19.9921|orf6.3863|IPF24923.1|IPF9366.2|Contig4-2991_0012|CA2100|CaO19.2385|CaO19.9921	Protein similar to S. cerevisiae Kti12p, which associates with Elongator complex; has a role in resistance to killer toxin; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	750222	751750	+	orf19.2384	750222	751750	1	750222	751750	750309	751415		orf19.9920|IPF24916.1|IPF9364.2|Contig4-2991_0013|orf6.3864|CA2101|CaO19.9920|CaO19.2384|IPF9364	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	751233	753352	-	orf19.2383	751233	753352	1	753352	751233	753241	751412	YKU80	orf19.9919|IPF24905.1|IPF9363.2|Contig4-2991_0014|orf6.3865|CA2102|CaO19.2383|CaO19.9919|IPF9363	Protein described as DNA double-strand break repair factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	753424	756492	+	orf19.2382	753424	756492	1	753424	756492	753493	756414		orf19.9918|IPF9361.2|IPF29109.1|Contig4-2991_0016|orf6.3866|CA2103|ISM1|CaO19.2382	Predicted ORF in Assemblies 19, 20 and 21; similar to isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase is the target of drugs including the cyclic beta-amino acid icofungipen/PLD-118/BAY-10-8888 and mupirocin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	756675	757815	+	orf19.2381	756675	757815	1	756675	757815	756742	757680		orf19.9917|IPF19939.1|IPF16604.2|Contig4-2991_0017|orf6.1378|orf6.3867|CA2104|CaO19.2381|IPF19939	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	757573	759597	-	orf19.2379	757573	759597	2	759597|759406	759489|757573	759538	757726	NOT4	orf19.9915|MOT2|IPF24909.1|IPF9357.2|Contig4-2991_0018|orf6.1380|orf6.3869|CA0449|SIG1|CaO19.2379|MOT2.3f|MOT2.3	Putative E3 ubiquitin-protein ligase; required for maintenance, but not induction, of hyphal development; homozygous null mutant is avirulent in mouse systemic infection despite persistence in host; repressed in rat oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	759746	760160	+	orf19.2378	759746	760160	1	759746	760160	759807	760160		orf19.9914|IPF18546.2|IPF9353.1|Contig4-2991_0019|Contig4-2991_0020|orf6.1381|orf6.3870|CA0450|PKR1|CaO19.2378|IPF9353	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chrR	760303	761082	+	orf19.2376	760303	761082	1	760303	761082	760303	761082		orf19.9912|IPF24926.1|IPF9352.1|Contig4-2991_0021|orf6.1383|HNT32|CaO19.9912|CaO19.2376	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	762145	764045	+	orf19.4384	762145	764045	2	762145|762718	762617|764045	762145	763933	HXT5	orf19.11862|orf19.11864|IPF3282|IPF22904.1|IPF3282.1|IPF3277|Contig4-3077_0025|Contig4-3077_0029|orf6.6321|orf6.6323|CA3914|orf19.4386|HXT10|CA3915|IPF3277.1	Protein described as a sugar transporter; transcription is upregulated in response to treatment with ciclopirox olamine; Snf3p-induced; alkaline downregulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	764391	765545	+	orf19.4388	764391	765545	1	764391	765545	764392	765510		orf19.11866|IPF22889.1|IPF3283.2|Contig4-3077_0023|orf6.6319|CA3913|CaO19.11866|TAF3|CaO19.4388|IPF3283	Predicted ORF in Assemblies 19, 20 and 21; has histone fold domain; similar to TAFII47 proteins from S. cerevisiae, Danio rerio, Drosophila melanogaster, human, and mouse [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	765183	765865	-	ntar_1244	765183	765865	1	765865	765183	765560	765183			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	767080	769174	+	orf19.4390	767080	769174	1	767080	769174	767513	769012		orf19.11868|IPF22884.1|IPF3288.1|Contig4-3077_0020|orf6.6317|CA3912|CaO19.11868|CaO19.4390|IPF3288	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	770495	772621	+	orf19.4391	770495	772621	1	770495	772621	770495	772621		orf19.11869|IPF22868.1|IPF3292.2|Contig4-3077_0016|orf6.6316|CA3911|YFW7|CaO19.4391|CaO19.11869|IPF3292	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	773128	775349	+	orf19.4392	773128	775349	1	773128	775349	773160	775046	DEM1	orf19.11870|IPF22875.1|IPF3293.2|Contig4-3077_0014|orf6.6315|CA3910|CaO19.4392|CaO19.11870|IPF3293	Predicted ORF in Assemblies 19, 20 and 21; alpha-factor induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	773529	774153	-	ntar_1245	773529	774153	1	774153	773529					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	774252	775317	-	ntar_1246	774252	775317	1	775317	774252	774458	774252			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	777788	779491	+	orf19.4393	777788	779491	2	777788|778020	777926|779491	777837	779333	CIT1	orf19.11871|orf6.6314|IPF22877.1|IPF28424.1|Contig4-3077_0009|CA3909|CIT1.exon2|IPF3299.1	Protein described as citrate synthase; soluble protein in hyphae; biofilm induced; expression greater in high iron; upregulated upon phagocytosis; Hog1p-downregulated; regulated by Efg1p under yeast-form but not hyphal growth conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	780330	782039	+	orf19.4394	780330	782039	1	780330	782039	780330	782039		orf19.11872|IPF22876.1|IPF3301.2|Contig4-3077_0008|orf6.6313|CA3908|CaO19.11872|CaO19.4394|IPF3301	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	781841	784048	-	orf19.4395	781841	784048	1	784048	781841	783889	782048		orf19.11873|IPF3304.2|IPF19225.2|Contig4-3077_0005|orf6.590|orf6.6312|CA3907|AIP1|CaO19.4395|IPF3304	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	784206	786340	+	orf19.4396	784206	786340	1	784206	786340	784374	786077		orf19.11874|IPF20149.1|IPF20043.1|Contig4-3077_0003|orf6.589|orf6.6311|CA3906|CaO19.4396|FMP13|IPF20149	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	786481	787557	+	orf19.4398	786481	787557	1	786481	787557	786517	787491		orf19.11876|IPF19792.1|IPF16920.3|Contig4-3077_0002|orf6.587|orf6.6309|CA3905|CaO19.4398|IPF19792.5f|IPF19792	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	787639	789070	+	orf19.4399	787639	789070	1	787639	789070	787653	789011		orf19.11877|IPF14888.2|IPF28426.1|Contig4-3077_0001|orf6.6308|CA3904|CaO19.11877|CaO19.4399|IPF14888	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	789247	790276	+	orf19.4400	789247	790276	1	789247	790276	789310	790125		orf19.11878|IPF22896.1|IPF14890.1|Contig4-1712_0002|orf6.6307|CA3903|CaO19.11878|CaO19.4400|IPF14890	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	790003	791121	-	orf19.4401	790003	791121	1	791121	790003	791099	790131	YVH1	orf19.11879|IPF22890.1|IPF14891.2|Contig4-1712_0003|orf6.6306|CA3902|CaO19.4401|CaO19.11879	Putative dual specificity phosphatase (phosphoserine/threonine and phosphotyrosine phosphatase); similar to S. cerevisiae Yvh1p; required for wild-type growth rate and for wild-type virulence in mouse model of systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	794436	795215	-	orf19.4383	794436	795215	1	795215	794436	795215	794436		orf19.11861|IPF22897.1|IPF3274.1|Contig4-3077_0032|orf6.6324|CA3916|CaO19.4383|HNT31|CaO19.11861|IPF3274	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	795383	796244	-	orf19.4382	795383	796244	1	796244	795383	796227	795625		orf19.11860|IPF22902.1|IPF3273.1|Contig4-3077_0034|orf6.6325|CA3917|CaO19.11860|RET3|CaO19.4382|IPF3273	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	796432	799516	-	orf19.4381	796432	799516	1	799516	796432	798986	796560	VTC3	orf19.11859|IPF22866.1|IPF3271.2|orf6.6326|VTC2|CA3918|CaO19.4381|CaO19.11859	Putative polyphosphate synthetase; downregulated in core caspofungin response; Hog1p-induced; transcription is opaque-specific; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	799773	800009	+	ntar_1247	799773	800009	1	799773	800009	799852	799998			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	800802	801019	+	ntar_1248	800802	801019	1	800802	801019					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	801143	803746	-	orf19.4380.1	801143	803746	1	803746	801143	803746	801143			Predicted ORF in Assembly 20 and 21 (see Locus History) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	804770	807595	+	orf19.4361	804770	807595	1	804770	807595	804770	807595	IFF3	orf19.11839|orf6.2179|IPF20094.1|IPF28444.1|Contig4-2765_0012|orf6.3778|CA2037|CaO19.4361|CaO19.11839	Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	807108	807331	-	ntar_1249	807108	807331	1	807331	807108					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	807641	809658	-	orf19.4362	807641	809658	1	809658	807641	809547	808438		orf19.11840|IPF22888.1|IPF7571.1|Contig4-2883_0014|orf6.3776|CA2036|CaO19.11840|MSP1|CaO19.4362	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	809838	812997	+	orf19.4363	809838	812997	1	809838	812997	809883	812957	SGD1	orf19.11841|YLR336C|Contig4-2883_0005|IPF7574.2|IPF28445.1|Contig4-2883_0008|Contig4-2883_0011|orf6.2425|orf6.3775|CA2035|CaO19.4363|CA2034|SGD1.3f|IPF18558.1|SGD1.5f	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response; transcription is increased in populations of cells exposed to fluconazole over multiple generations [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	812896	815121	-	orf19.4365	812896	815121	1	815121	812896	814756	812990		orf19.11843|IPF22879.1|IPF7575.2|Contig4-2883_0004|orf6.2424|orf6.3773|CA1097|TRM22|CaO19.4365|IPF7575	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	816393	818339	+	orf19.4366	816393	818339	1	816393	818339	816393	818339		orf19.11844|IPF18559.2|IPF7578.2|Contig4-2883_0002|orf6.2423|orf6.3772|CA1096|CaO19.4366|YFW8|IPF7578	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	818344	822214	-	orf19.4367	818344	822214	1	822214	818344	822147	818425	SMC1	orf19.11845|IPF22919.1|IPF7580.2|Contig4-2883_0001|orf6.2422|CA1095|CaO19.11845|CaO19.4367	Protein described as similar to chromosomal ATPases; RNA abundance regulated by tyrosol and cell density; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	823073	825562	+	orf19.4368	823073	825562	1	823073	825562	823246	825456		orf19.11846|IPF12369.2|IPF15478.2|Contig4-2011_0002|Contig4-2011_0003|orf6.2254|orf6.2421|CA0998|CaO19.4368|IPF12369	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	825426	829073	-	orf19.4369	825426	829073	1	829073	825426	829063	825518		orf19.11847|IPF12368|IPF12368.2|IPF28438.1|Contig4-2011_0004|Contig4-2376_0001|Contig4-2376_0002|Contig4-2376_0003|orf6.2255|CA0999|CaO19.11847|CaO19.4369	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	829292	829868	+	ntar_1250	829292	829868	1	829292	829868	829391	829525			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	829349	830901	-	orf19.4370	829349	830901	1	830901	829349	830528	829626		orf19.11848|IPF22892.1|IPF9450.2|Contig4-2376_0005|orf6.4535|CA2581|CaO19.4370|IPF9450	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide; oxidative stress-induced via Cap1p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	831797	832932	+	orf19.4371	831797	832932	1	831797	832932	831860	832831	TAL1	orf19.11849|IPF22891.1|IPF9448.2|Contig4-2376_0009|orf6.4536|CA2582|CaO19.11849|CaO19.4371	Predicted ORF in Assemblies 19, 20 and 21; biofilm induced; oxidative stress-induced via Cap1p; induced by nitric oxide in yhb1 mutant; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	832959	835174	-	orf19.4372	832959	835174	1	835174	832959	834547	833216		orf19.11850|IPF22878.1|IPF9445.2|Contig4-2849_0001|Contig4-2849_0005|orf6.4537|CA2583|CaO19.11850|CaO19.4372|IPF9445	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	835432	836004	+	ntar_1251	835432	836004	1	835432	836004	835629	835847			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	835722	836670	-	orf19.4373	835722	836670	1	836670	835722	836568	836038		orf19.11851|orf6.4538|IPF22903.1|IPF9440.1|Contig4-2849_0008|CA2584|FMN1|CaO19.11851|CaO19.4373|IPF9440	Protein similar to S. cerevisiae Fmn1p, which is riboflavin kinase; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	836746	838099	-	orf19.4374	836746	838099	1	838099	836746	838038	836857	PRP42	orf19.11852|IPF22887.1|IPF9438.2|Contig4-2849_0010|orf6.4539|CA2585|CaO19.11852|CaO19.4374|IPF9438	Putative component of the U1 snRNP, involved in splicing; ortholog of S. cerevisiae PRP42; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	839046	840011	+	orf19.4375	839046	840011	1	839046	840011	839137	839925		orf19.11853|IPF22895.1|IPF9435.1|Contig4-2849_0013|orf6.4540|CA2586|CaO19.4375|CaO19.11853|IPF9435	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	839897	840886	-	orf19.4375.1	839897	840886	2	840886|840471	840808|839897	840810	840283	RPS30	IPF22874.1|IPF15100.2|Contig4-2849_0014|CA2587|RPS30.3	ORF Predicted by Annotation Working Group; putative 40S ribosomal protein S30; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	841184	842107	-	orf19.4376	841184	842107	1	842107	841184	841970	841233		orf19.11854|IPF22898.1|IPF15098.2|Contig4-2849_0015|orf6.4541|CA2588|CaO19.11854|CaO19.4376|IPF15098	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	841193	841542	+	ntar_1252	841193	841542	1	841193	841542					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	843689	844774	-	orf19.4377	843689	844774	1	844774	843689	844400	844008	KRE1	orf19.11855|IPF22909.1|IPF13702.2|Contig4-2849_0017|orf6.4542|CA2589|CaO19.11855|CaO19.4377	Predicted GPI-anchor, role in 1,6-beta-D-glucan biosynthesis; production in S. cerevisiae increases glucan content and complements killer toxin sensitivity of kre1 mutant; possible N-linked glycosylation at Asn109; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	847747	848937	-	orf19.4378	847747	848937	2	848937|848736	848812|847747	848828	847833		orf19.11828|orf19.11856|IPF22894.1|IPF13700.2|IPF22893.1|IPF12918.1|Contig4-2577_0002|Contig4-2849_0022|orf6.2806|orf6.4543|CA1348|CA2590|orf19.4350|CaO19.11856|CaO19.4378|PPH32.3f|PPH3.3b	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	849327	852183	+	orf19.4379	849327	852183	1	849327	852183	849450	852053	PRP13	orf19.11829|orf19.11857|IPF15868.3|IPF12922.2|IPF22865.1|IPF28423.1|Contig4-2577_0006|Contig4-2720_0005|Contig4-2720_0006|orf6.2807|orf6.4544|orf6.6327|orf6.352|orf6.575|CA1349|orf19.4351|PRP12|CaO19.4379|PRP122	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chrR	852053	853605	-	orf19.4353	852053	853605	1	853605	852053	853582	852107	ULP2	orf19.11831|IPF19593.1|IPF19592.1|Contig4-2720_0003|orf6.2809|orf6.576|CA0120|CaO19.4353|ULP1|IPF19592|IPF19593	Putative SUMO deconjugation enzyme that removes the small ubiquitin-like modifier (SUMO) from proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	853888	856787	-	orf19.4354	853888	856787	1	856787	853888	856674	853963	MCM2	orf19.11832|IPF17769.3|IPF15306.2|Contig4-2720_0001|orf6.2810|orf6.577|CA1350|CaO19.4354	Phosphorylated protein of unknown function; transcription is periodic with a peak at M/G1 phase of the cell cycle; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	857847	858891	-	orf19.4355	857847	858891	1	858891	857847	858505	857993		orf19.11833|orf6.2811|orf6.3783|CA2041|CaO19.4355|IPF12944|IPF12944.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	860471	862707	+	orf19.4356	860471	862707	1	860471	862707	860668	862611	HGT3	orf19.11834|YDL199C|IPF22873.1|IPF12946.2|Contig4-2535_0003|orf6.3782|CA2040|CaO19.4356|CaO19.11834|IPF12946	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments, extended C terminus; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	862678	864462	-	orf19.4357	862678	864462	1	864462	862678	864429	862765		orf19.11835|IPF12947.2|IPF17511.3|Contig4-2535_0002|orf6.252|orf6.3781|CA2039|CaO19.4357|IPF12947	Putative protein of unknown function; has similarity to S. cerevisiae Mgr3p, which is a subunit of the i-AAA protease supercomplex that degrades misfolded mitochondrial proteins; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	864646	865346	+	orf19.4358	864646	865346	1	864646	865346	864755	865057		orf19.11836|IPF17510.1|IPF12948.1|Contig4-2535_0001|orf6.253|orf6.3780|CA2038|CaO19.4358|IPF17510	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	866462	869287	+	orf19.465	866462	869287	1	866462	869287	866462	869287	IFF9	orf19.8096|orf6.2179|IPF19893.2|IPF29820.1|Contig4-2765_0012|Contig4-2883_0016|orf6.353|CaO19.465	Transcriptionally regulated by iron; expression greater in low iron; similar to GPI-linked cell-wall proteins; similar to Hyr1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	877809	880666	+	orf19.467	877809	880666	1	877809	880666	878587	880515		orf19.8098|IPF26770.1|IPF10055.2|Contig4-2397_0002|Contig4-2397_0004|orf6.3214|CA1624|CaO19.8098|CaO19.467|IPF10055	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	882507	882664	+	ntar_1253	882507	882664	1	882507	882664					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	882509	882783	-	ntar_1254	882509	882783	1	882783	882509					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	883210	883518	+	ntar_1255	883210	883518	1	883210	883518					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	883366	883950	-	ntar_1256	883366	883950	1	883950	883366	883950	883453			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	883885	885953	+	orf19.469	883885	885953	1	883885	885953	884043	885812	HST7	orf19.8100|STE7|IPF26774.1|IPF10048.2|Contig4-3015_0018|orf6.3212|CA1623|CaO19.8100|CaO19.469	MAP kinase kinase, involved in signal transduction pathways for mating and hyphal growth; phosphorylates Cek1p; not required for wild-type virulence in mouse systemic infection; functional homolog of S. cerevisiae Ste7p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	885863	888475	-	orf19.470	885863	888475	1	888475	885863	888243	885991		orf19.8101|IPF11135.3|IPF10045.3|Contig4-2684_0007|orf6.2281|orf6.3211|CA1622|TAF12|CaO19.470|IPF10045|IPF10045.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	888752	891171	-	orf19.473	888752	891171	1	891171	888752	890929	888821	TPO4	orf19.8104|IPF26767.1|IPF11142.2|Contig4-2684_0006|orf6.2283|CA1016|CaO19.8104|CaO19.473|IPF11142	Putative sperimidine transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	892669	894283	-	orf19.474	892669	894283	1	894283	892669	894237	892936		orf19.8105|IPF11144.1|IPF29797.1|Contig4-2241_0003|orf6.2284|CA1017|CaO19.8105|CaO19.474|IPF11144	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	894672	895949	+	orf19.475	894672	895949	1	894672	895949	894751	895851		orf19.8106|orf19.8107|IPF19567.1|IPF26829.1|IPF26805.1|IPF10696.2|IPF19566.1|orf6.329|orf6.986|orf6.987|CA0052|orf19.476|IPF19567	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	896062	897118	+	orf19.477	896062	897118	1	896062	897118	896186	896971		orf19.8108|IPF18205.2|IPF7101.1|Contig4-2441_0004|orf6.7093|orf6.988|CA0253|RRF1|CaO19.477|FIL1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	896935	898859	-	orf19.478	896935	898859	1	898859	896935	898747	897050		orf19.8109|IPF7100.2|IPF19077.2|IPF29796.1|Contig4-2441_0006|orf6.7092|orf6.989|CA6316|CA4526|orf19.479|MON1.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	898990	899811	-	orf19.479.2	898990	899811	2	899811|899671	899749|898990	899782	899055		IPF26812.1|IPF7098.2|Contig4-2441_0008|CA4525|SEC22	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	900060	901252	+	orf19.480	900060	901252	1	900060	901252	900155	900883		orf19.8110|IPF26806.1|IPF7097.2|Contig4-2441_0009|Contig4-2441_0010|orf6.7091|CA4524|CaO19.8110|CaO19.480|IPF7097	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	901072	902795	-	orf19.481	901072	902795	1	902795	901072	902746	901304	GCD1	orf19.8111|IPF26786.1|IPF7094.1|Contig4-2441_0012|orf6.7090|CA4523|CaO19.8111|CaO19.481	Putative translation initiation factor; transcription is regulated by Mig1p; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	902965	904535	+	orf19.482	902965	904535	1	902965	904535	903069	904355	RPT4	orf19.8112|IPF26793.1|IPF7093.1|Contig4-2779_0010|orf6.7089|CA4522|CaO19.482|CaO19.8112	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	904377	905502	-	orf19.484	904377	905502	1	905502	904377	905449	904433	MRPL40	orf19.8114|IPF26798.1|IPF7091.1|Contig4-2779_0009|orf6.7087|CA4521|CaO19.8114|CaO19.484	Putative mitochondrial ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	905639	906523	-	orf19.485	905639	906523	2	906523|905809	905901|905639	906468	905772		orf19.8115|IPF26809.1|IPF7089.1|Contig4-2779_0007|orf6.7086|CA4520|CDC31	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	906673	909791	+	orf19.486	906673	909791	1	906673	909791	906700	909387	NIP100	orf19.8116|IPF26758.1|IPF7088.2|Contig4-2779_0005|orf6.7085|CA4519|CaO19.8116|CaO19.486|IPF7088	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	909100	910878	-	orf19.487	909100	910878	1	910878	909100	910720	909362	SPT14	orf19.8117|IPF26792.1|IPF7087.2|Contig4-2779_0003|orf6.7084|CA4518|CaO19.487|CaO19.8117	Putative DNA-binding transcription factor; predicted role in regulation of biogenesis of the cell wall; upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	911014	913130	-	orf19.488	911014	913130	1	913130	911014	912970	911117	MEX67	orf19.8118|IPF26772.1|IPF7086.2|Contig4-2779_0001|orf6.7083|CA4517|CaO19.8118|CaO19.488	Nuclear export protein; has NTF2-like domain; interacts with Mtr2p via the NTF2-like domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	913216	914135	-	orf19.489	913216	914135	1	914135	913216	913874	913407	DAP1	orf19.8119|IPF26817.1|IPF18207.1|orf6.7082|CA4516|CaO19.8119|CaO19.489|IPF18207	Protein similar to S. cerevisiae Dap1p, which is a protein related to mammalian membrane-associated progesterone receptors involved in response to DNA damage; induced in core stress response; Hog1p regulated; clade-associated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	914297	915379	+	orf19.490	914297	915379	1	914297	915379	914690	915217		orf19.8120|IPF26813.1|IPF16652.2|Contig4-1834_0003|orf6.7081|CA4515|NAT5|CaO19.8120|CaO19.490|IPF16652	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	915178	917522	-	orf19.491	915178	917522	1	917522	915178	917420	915399		orf19.8121|IPF26769.1|IPF20016.1|Contig4-2904_0012|orf6.7080|CA4514|SEC63|CaO19.8121|CaO19.491|IPF20016	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	917753	919821	-	orf19.492	917753	919821	1	919821	917753	919622	917844	ADE17	orf19.8122|IPF26775.1|IPF14907.2|Contig4-2904_0011|orf6.7079|CA4513|CaO19.492|CaO19.8122	Enzyme of adenine biosynthesis; antigenic in human; soluble protein in hyphae; not induced during GCN response, in contrast to the S. cerevisiae ortholog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	920311	921068	-	orf19.493	920311	921068	1	921068	920311	921025	920411	RPL15A	orf19.8123|IPF8963.2|IPF15914.3|RPL15B|Contig4-2904_0008|orf6.269|orf6.7078|CA0042|RPL15|CaO19.493|CA4512	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	921771	923728	+	orf19.494	921771	923728	1	921771	923728	921819	923564		orf19.8124|IPF8966.2|IPF15912.3|Contig4-2904_0005|orf6.270|orf6.7077|CA4511|CaO19.494|NAF1|IPF8966	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	923540	926371	-	orf19.496	923540	926371	1	926371	923540	926371	923600		orf19.8126|IPF26756.1|IPF8970.1|Contig4-2904_0004|orf6.7075|CA4510|MSH1|CaO19.8126|CaO19.496|IPF8970	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	926647	928135	-	orf19.497	926647	928135	1	928135	926647	927984	926647	EAF7	orf19.8127|IPF26790.1|IPF8973.2|Contig4-2904_0003|orf6.7074|CA4509|CaO19.497|CaO19.8127|IPF8973	subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	928245	929785	+	orf19.498	928245	929785	1	928245	929785	928322	929707		orf19.8128|IPF26789.1|IPF8974.2|Contig4-2904_0001|orf6.7073|CA4508|CaO19.8128|NAM9|CaO19.498	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	929962	930882	+	orf19.499	929962	930882	1	929962	930882	929962	930882		orf19.8129|IPF26800.1|IPF20015.1|Contig4-2231_0003|orf6.7072|CA4507|CaO19.8129|CaO19.499|IPF20015	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	930773	932455	-	orf19.500	930773	932455	1	932455	930773	932345	930984		orf19.8130|IPF26791.1|IPF15038.2|Contig4-2231_0002|orf6.7071|CA4506|CaO19.500|GCD10|CaO19.8130	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	932579	934543	+	orf19.501	932579	934543	1	932579	934543	932645	934501		orf19.8131|IPF26773.1|IPF15042.2|Contig4-2231_0001|Contig4-2663_0006|orf6.7070|CA4505|NOP2|CaO19.501|CaO19.8131	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	934442	936982	-	orf19.504	934442	936982	1	936982	934442	936927	934597		orf19.8134|IPF26762.1|IPF10388.2|Contig4-2663_0005|orf6.7067|CA4504|ARP5|CaO19.8134|CaO19.504	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	937161	938982	+	orf19.505	937161	938982	1	937161	938982	937213	938850	SRV2	orf19.8135|CAP|CAP1|IPF26777.1|IPF10389.2|Contig4-2663_0003|orf6.7066|CA4503|CaO19.8135|CAP001|CaO19.505	Adenylate cyclase-associated protein that regulates adenylate cyclase activity; required for wild-type germ tube formation and for virulence in mouse systemic infection; mutant defects in filamentous growth are rescued by cAMP or dbcAMP [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	939089	940536	+	orf19.506	939089	940536	1	939089	940536	939273	940454	YDJ1	orf19.8136|IPF10391.1|IPF29798.1|Contig4-2663_0001|orf6.7065|CA4502|CaO19.506|IPF10391	Predicted ORF in Assemblies 19, 20 and 21; heavy metal (cadmium) stress-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	940919	942821	-	orf19.508	940919	942821	1	942821	940919	942696	941167	QDR1	orf19.8138|IPF16422.2|IPF19400.2|Contig4-2663_0007|orf6.183|orf6.7063|CA4501|CaO19.508	Putative transporter of antibiotic resistance; transcription is regulated by Nrg1p and Tup1p; caspofungin repressed; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	943899	945401	-	orf19.510	943899	945401	1	945401	943899	945401	943908		orf19.8141|IPF11319.2|IPF29794.1|Contig4-3063_0003|Contig4-3063_0005|orf6.7060|CA4500|CaO19.8141|GLB|CaO19.510|IPF11319	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	944409	944600	+	ntar_1257	944409	944600	1	944409	944600					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	947327	948357	+	orf19.511	947327	948357	1	947327	948357	947461	948189		orf19.8142|IPF26802.1|IPF11316.1|Contig4-3063_0011|orf6.7059|CA4499|CaO19.511|CaO19.8142|IPF11316	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	948190	951555	-	orf19.512	948190	951555	1	951555	948190	951493	948365		orf19.8143|IPF11315.2|IPF29817.1|Contig4-3063_0012|Contig4-3063_0014|orf6.6724|orf6.7058|CA4498|CaO19.8143|CaO19.512|IPF11315|CA4229|IPF12480.5|IPF12480.1	Predicted ORF in Assemblies 19, 20 and 21; essential; S. cerevisiae ortholog is essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	952043	953515	+	orf19.513	952043	953515	1	952043	953515	952043	953515		orf19.8144|IPF26785.1|IPF12481.2|Contig4-3063_0015|orf6.6725|CA4230|CaO19.513|NDT802|CaO19.8144|IPF12481	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	953712	954239	+	orf19.514	953712	954239	2	953712|954150	954070|954239	953806	954175	SNP3	orf19.8145|IPF26838.1|IPF12483.2|Contig4-3063_0016|orf6.6726|CA4231	Transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	954143	954791	-	orf19.515	954143	954791	1	954791	954143	954759	954313		orf19.8146|IPF26823.1|IPF12484.2|Contig4-3063_0017|orf6.6727|CA4232|CaO19.515|CaO19.8146|IPF12484	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	955158	955618	+	ntar_1258	955158	955618	1	955158	955618					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	955579	957362	-	orf19.516	955579	957362	1	957362	955579	957305	955620		orf19.8147|IPF26776.1|IPF12486.1|Contig4-3063_0018|Contig4-3063_0019|orf6.6728|CA4233|CaO19.516|RFT1|CaO19.8147	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	957538	958179	+	orf19.517	957538	958179	1	957538	958179	957652	957969	HAP31	orf19.8148|orf6.6729|IPF26841.1|IPF12488.1|Contig4-3063_0020|CA4234|CaO19.517|CaO19.8148|HAP3	Protein described as a transcription factor that regulates CYC1; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	958485	960716	+	orf19.518	958485	960716	1	958485	960716	958491	960632		orf19.8149|IPF26766.1|IPF8167.2|Contig4-3063_0021|orf6.6730|CA4235|NCL1|CaO19.518	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	960524	961483	-	orf19.519	960524	961483	1	961483	960524	961300	960713		orf19.8150|IPF8168.2|IPF8166.2|Contig4-3063_0022|orf6.399|orf6.6731|CA4236|CaO19.519|CaO19.8150|IPF8166	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	961848	963171	+	orf19.520	961848	963171	1	961848	963171	961925	963124		orf19.8151|IPF8170.2|IPF6375.2|Contig4-3063_0023|orf6.398|orf6.6732|CA4237|CaO19.520|IPF6375	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	963524	966889	+	orf19.522	963524	966889	1	963524	966889	963557	966793		orf19.8154|IPF26755.1|IPF8173.2|Contig4-3063_0025|orf6.396|orf6.6734|CA4238|PIM1|CaO19.522	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	966806	968294	-	orf19.524	966806	968294	1	968294	966806	968252	966906		orf19.8157|IPF26788.1|IPF8174.2|Contig4-3063_0028|orf6.6736|CA4239|CaO19.8157|MLO2|CaO19.524|IPF8174	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	968511	969238	-	orf19.526	968511	969238	1	969238	968511	969176	968697	NHP2	orf19.8159|IPF26815.1|IPF8176.1|Contig4-3063_0030|Contig4-3063_0031|orf6.6738|CA4240|CaO19.8159|CaO19.526	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	969332	970299	+	orf19.527	969332	970299	1	969332	970299	969440	970225		orf19.8160|IPF26804.1|IPF8177.1|Contig4-3063_0032|orf6.6739|CA4241|CaO19.527|CaO19.8160|IPF8177	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	970192	973287	-	orf19.528	970192	973287	1	973287	970192	973196	970338		orf19.8161|IPF26757.1|IPF15941.2|Contig4-3063_0033|orf6.6740|CA4242|CaO19.528|SEC26|CaO19.8161	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	973558	976282	-	orf19.529	973558	976282	1	976282	973558	975997	973610		orf19.8162|IPF26764.1|IPF16491.2|Contig4-3063_0038|orf6.6741|CA4243|CaO19.8162|CaO19.529|IPF16491	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	977057	977393	+	orf19.529.1	977057	977393	1	977057	977393	977169	977393			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	977537	978941	+	orf19.530	977537	978941	1	977537	978941	977537	978862		orf19.8163|IPF4305|IPF26784.1|IPF4305.2|Contig4-2736_0014|orf6.6742|CA4244|CaO19.530|CaO19.8163	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	978925	980023	-	orf19.532	978925	980023	1	980023	978925	979776	979270	RBR2	orf19.8165|orf6.6744|PGA21|IPF26816.1|IPF4303.2|Contig4-2736_0002|CA4245|CaO19.532|IPF4303	Cell wall protein; expression is repressed by Rim101p; expression is regulated upon white-opaque switching; transcription is repressed in response to alpha pheromone in SpiderM medium; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	979100	979893	+	ntar_1259	979100	979893	1	979100	979893	979100	979477			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	980823	981137	+	orf19.533	980823	981137	1	980823	981137	980823	981137		orf19.8166|IPF26834.1|IPF29811.1|orf6.448|orf6.6745|CaO19.533	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	981988	982497	-	orf19.535	981988	982497	1	982497	981988	982434	982099	RBR1	orf19.8168|orf6.6747|PGA20|orf6.450|IPF4300.3|IPF4299.2|Contig4-2736_0005|Contig4-2736_0006|CA4246|CaO19.535|IPF4299	Glycosylphosphatidylinositol (GPI)-anchored cell wall protein required for filamentous growth at acidic pH; expression is repressed by Rim101p and activated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	984068	986649	-	orf19.536	984068	986649	1	986649	984068	986606	984210		orf19.8169|IPF26763.1|IPF4296.2|Contig4-2736_0011|orf6.6748|CA4247|CaO19.8169|TAF5|CaO19.536|TAF90	Putative ortholog of S. cerevisiae TAF5; has a LisH motif; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	986772	987748	-	orf19.537	986772	987748	1	987748	986772	987660	986863		orf19.8170|IPF26803.1|IPF4294.2|Contig4-2736_0012|orf6.6749|CA4248|CaO19.8170|CaO19.537|IPF4294	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	987802	988911	+	orf19.538	987802	988911	1	987802	988911	987838	988752		orf19.8171|IPF26801.1|IPF4293.2|Contig4-2736_0013|orf6.6750|CA4249|CaO19.538|GPI2|CaO19.8171|IPF4293	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	988673	990542	-	orf19.539	988673	990542	1	990542	988673	990430	988901	LAP3	orf19.8172|orf6.6751|IPF26781.1|IPF4292.2|CA4250|CaO19.8172|CaO19.539|IPF4292	Protein described as an aminopeptidase; transcription is positively regulated by Sfu1p; transcription is repressed in response to alpha pheromone in SpiderM medium; clade-associated gene expression; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	990732	991793	-	orf19.540	990732	991793	1	991793	990732	991762	990812		orf19.8173|IPF26799.1|IPF4291.2|orf6.6752|CA4251|PPT2|CaO19.540|CaO19.8173|IPF4291	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	991248	991666	+	ntar_1260	991248	991666	1	991248	991666	991252	991386			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	991962	993376	-	orf19.541	991962	993376	1	993376	991962	993229	992108		orf19.8174|IPF26796.1|IPF4290.1|Contig4-1913_0001|orf6.6753|CA4252|CaO19.8174|CaO19.541|IPF4290	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	993813	994222	+	ntar_1261	993813	994222	1	993813	994222					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	994569	994809	-	ntar_1262	994569	994809	1	994809	994569					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	995297	996977	+	orf19.542	995297	996977	1	995297	996977	995402	996856	HXK2	orf19.8176|IPF4286.2|IPF29795.1|Contig4-2548_0007|orf6.598|orf6.6754|CA0127|CaO19.542|HXK2.3f	Protein described as hexokinase II; antigenic in human; downregulated in the presence of human neutrophils; regulated by Efg1p; fluconazole-induced; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	997068	997573	-	ntar_1263	997068	997573	1	997573	997068	997418	997143			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	997128	997613	+	orf19.542.2	997128	997613	1	997128	997613	997186	997575		IPF4284.2|IPF18234.1|Contig4-2548_0005|orf6.597|CA4254|IPF18234.3f|CA0126|IPF4284|IPF18234.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	997714	999429	+	orf19.543	997714	999429	1	997714	999429	997835	999223	FUM11	orf19.8178|orf6.6755|IPF19222.2|IPF4283.2|Contig4-2548_0004|orf6.596|CA4255|CaO19.543	Protein described as fumarate hydratase; transcriptionally regulated by iron; expression greater in high iron; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	997717	998231	-	ntar_1264	997717	998231	1	998231	997717					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	998357	998649	-	ntar_1265	998357	998649	1	998649	998357	998649	998443			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	998784	999684	-	orf19.544	998784	999684	1	999684	998784	999645	999220		orf19.8179|IPF26822.1|IPF4282.2|Contig4-2548_0003|orf6.6756|CA4256|CaO19.8179|RPR2|CaO19.544|IPF4282	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	999771	1001261	+	orf19.544.1	999771	1001261	3	999771|999967|1000076	999871|999986|1001261	999837	1000773	PRE6	IPF26808.1|IPF4281.2|Contig4-2548_0002|CA4257	Protein described as alpha-4 subunit of proteasome; reported as macrophage-induced protein and macrophage/pseudohyphal-repressed gene; regulated by Gcn2p and Gcn4p; removed from/reinstated in Assembly 20 (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1000767	1001980	-	orf19.547	1000767	1001980	1	1001980	1000767	1001940	1000822		orf19.8182|IPF26795.1|IPF4279.2|orf6.6759|CA4258|RAD27|CaO19.8182|CaO19.547|IPF4279	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1002162	1003341	-	orf19.548	1002162	1003341	1	1003341	1002162	1003270	1002197	CDC10	orf19.8183|IPF26797.1|IPF4277.2|Contig4-2070_0004|orf6.6760|CA4259|CaO19.8183|CaO19.548	Septin, required for wild-type cell, hyphal, or chlamydospore morphology; role in virulence and kidney tissue invasion in a mouse model of systemic infection; forms ring at sites of cell division and filaments in mature chlamydospore [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1003456	1003744	+	ntar_1266	1003456	1003744	1	1003456	1003744	1003456	1003668			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1003855	1004945	+	orf19.549	1003855	1004945	1	1003855	1004945	1004064	1004687		orf19.8184|IPF26811.1|IPF4276.2|Contig4-2070_0001|Contig4-2649_0003|orf6.6761|CA4260|MRPL32|CaO19.8184|CaO19.549|IPF4276	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1004716	1005670	-	orf19.550	1004716	1005670	1	1005670	1004716	1005653	1004844	PDX3	orf19.8185|IPF15643.2|IPF4274.2|Contig4-2070_0006|Contig4-2649_0004|orf6.6762|CA4261|CaO19.550	Transcription is regulated upon yeast-hyphal switch; regulated by Nrg1p, Mig1p, and Tup1p; caspofungin repressed; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1006018	1008248	+	orf19.551	1006018	1008248	1	1006018	1008248	1006507	1008165		orf19.8186|IPF15641.2|IPF29791.1|Contig4-2649_0006|orf6.1932|CA0795|CaO19.551|IPF15641	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1008215	1009717	-	orf19.552	1008215	1009717	1	1009717	1008215	1009717	1008215		orf19.8187|IPF26783.1|IPF15639.2|Contig4-2649_0008|orf6.1931|CA0794|CaO19.8187|ATG22|CaO19.552|IPF15639	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1009971	1011488	-	orf19.553	1009971	1011488	1	1011488	1009971	1011488	1009971		orf19.8188|IPF26782.1|IPF16273.2|Contig4-2649_0010|orf6.1930|CA0793|CaO19.553|DTR1|CaO19.8188|IPF16273	[NOT TRANSCRIBED?] Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1011750	1013148	-	orf19.554	1011750	1013148	1	1013148	1011750	1013148	1011985	DIT2	orf19.8189|IPF26794.1|IPF20066.2|Contig4-2649_0012|orf6.1929|CA0792|CaO19.8189|CaO19.554|DIT2.3eoc|IPF20066.1	Monooxygenase of the cytochrome P450 family involved in chlamydospore formation; produces N,N'-bisformyl dityrosine from N-formyltyrosine; transcription is regulated by Nrg1p, Mig1p, and Tup1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chrR	1013629	1013984	-	ntar_1267	1013629	1013984	1	1013984	1013629	1013766	1013629			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1014172	1015698	+	orf19.1741	1014172	1015698	1	1014172	1015698	1014172	1015698	DIT1	orf19.9308|IPF15414.2|IPF29325.1|Contig4-2127_0005|orf6.1352|CA0437|CaO19.1741	[NOT TRANSCRIBED?] Protein described as spore wall maturation protein; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1015895	1016309	+	orf19.1738.1	1015895	1016309	1	1015895	1016309	1015949	1016236		IPF25583.1|IPF15412.2|Contig4-2127_0004|CA0436|RBL2	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1016296	1018214	-	orf19.1738	1016296	1018214	2	1018214|1017869	1018010|1016296	1018054	1016412	UGP1	orf19.9305|orf6.1349|IPF15411.2|IPF19328.2|Contig4-2127_0003|orf6.346|CA0435|CaO19.1738	Protein similar to UTP-glucose-1-phosphaturidyl transferase; localizes to cell surface of yeast-form cells, but not hyphal cells; Hog1p-downregulated; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1018420	1018776	-	orf19.1737	1018420	1018776	1	1018776	1018420	1018776	1018420		IPF29327.1|orf6.347|CaO19.1737	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1018895	1019813	-	orf19.1736	1018895	1019813	1	1019813	1018895	1019385	1019083		orf19.9304|IPF13574.1|IPF15408.2|Contig4-1840_0002|Contig4-2127_0001|orf6.1348|orf6.348|CaO19.1736	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1019243	1019871	+	ntar_1268	1019243	1019871	1	1019243	1019871	1019603	1019827			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1020018	1020133	-	ts(gcu)2	1020018	1020133	2	1020133|1020062	1020097|1020018				tS(GCU)2.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1020227	1020341	-	ts(gcu)1	1020227	1020341	2	1020341|1020271	1020305|1020227				tS(GCU)1.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1020818	1021464	+	orf19.1735	1020818	1021464	1	1020818	1021464	1020933	1021337		orf19.9303|IPF13577.2|IPF19052.2|Contig4-1840_0001|orf6.1347|CA0434|CaO19.1735|IPF13577	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1021383	1025605	-	orf19.1734	1021383	1025605	1	1025605	1021383	1025600	1021437		orf19.9302|IPF25587.1|IPF13578.2|Contig4-3008_0029|orf6.1094|orf6.1346|CA0305|INO80|CaO19.1734	Predicted ORF in Assemblies 19, 20 and 21; heterozygous null mutant displays sensitivity to virgineone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1026252	1026428	+	ntar_1269	1026252	1026428	1	1026252	1026428					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1026879	1027456	+	orf19.6318	1026879	1027456	1	1026879	1027456	1026963	1027295		orf19.13695|IPF20835.1|IPF6280.2|Contig4-3056_0003|orf6.5511|CA3285|CaO19.6318|CaO19.13695|IPF6280	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1027309	1031708	-	orf19.6317	1027309	1031708	1	1031708	1027309	1031590	1027478	ADE6	orf19.13694|IPF20840.1|IPF6279.2|Contig4-3056_0004|orf6.5510|CA3284|CaO19.6317|CaO19.13694	Enzyme of adenine biosynthesis; not induced during GCN response, in contrast to the S. cerevisiae ortholog; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1031983	1032787	+	orf19.6316.4	1031983	1032787	1	1031983	1032787	1032458	1032733		IPF20842.1|IPF6277.2|Contig4-3056_0006|Contig4-3056_0007	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1032710	1034542	-	orf19.6316	1032710	1034542	1	1034542	1032710	1034479	1032794		orf19.13693|IPF20825.1|IPF6274.1|Contig4-3056_0009|orf6.5509|CA3283|FMP421|CaO19.13693|CaO19.6316|IPF6274	Predicted membrane transporter, member of the L-amino acid transporter-3 (LAT3) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1034651	1035632	-	orf19.6315	1034651	1035632	1	1035632	1034651	1035522	1034953		orf19.13692|IPF20834.1|IPF6272.2|Contig4-3056_0010|orf6.5508|CA3282|CaO19.6315|CaO19.13692|IPF6272	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1035891	1036853	+	orf19.6314	1035891	1036853	1	1035891	1036853	1036065	1036511	RPB8	orf19.13691|IPF20837.1|IPF6271.2|Contig4-3056_0012|orf6.5507|CA3281|CaO19.13691|CaO19.6314	Protein described as a subunit of RNA polymerases I, II, and III; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); heterozygous null mutant exhibits resistance to parnafungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1036960	1037810	+	orf19.6313.2	1036960	1037810	2	1036960|1037177	1037100|1037810	1037082	1037649		IPF20838.1|IPF6269.1|Contig4-3056_0013|CA3280|IPF6269|IPF6269.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1038275	1040442	+	orf19.6313	1038275	1040442	1	1038275	1040442	1038275	1040434	MNT4	orf19.13690|orf6.5506|IPF20823.1|IPF6268.2|Contig4-3056_0014|Contig4-3056_0015|Contig4-3056_0016|CA3279|CaO19.13690|CaO19.6313|IPF6268	Transcriptionally regulated by iron; expression greater in low iron; similar to mannosyltransferases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1040957	1041906	+	orf19.6312	1040957	1041906	1	1040957	1041906	1041023	1041778	RPS3	orf19.13689|IPF20833.1|IPF6267.1|Contig4-3056_0018|orf6.5505|CA3278|CaO19.6312|CaO19.13689|RPS3E	Putative ribosomal protein; Hog1p-induced; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1042269	1042540	+	ntar_1270	1042269	1042540	1	1042269	1042540					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1043145	1043954	+	orf19.6311	1043145	1043954	1	1043145	1043954	1043339	1043644		orf19.13688|IPF20839.1|IPF6266.2|Contig4-3056_0022|orf6.5504|CA3277|CaO19.13688|CaO19.6311|IPF6266	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1044276	1047084	-	orf19.6310	1044276	1047084	1	1047084	1044276	1046835	1044415		orf19.13687|IPF20822.1|IPF6263.2|Contig4-3056_0025|Contig4-3056_0026|orf6.5503|CA3276|CaO19.13687|CaO19.6310|IPF6263	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	1048130	1050367	-	orf19.6309	1048130	1050367	1	1050367	1048130	1050182	1048269	MSS11	orf19.13686|IPF19485.2|IPF17068.2|Contig4-3056_0031|orf6.20|orf6.5502|CA3275|CaO19.6309|IPF17068	Transcriptional activator, binds to Flo8p via a LisH motif to cooperatively activate transcription of hyphal-specific genes; required for hyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1051246	1052111	-	orf19.6308	1051246	1052111	1	1052111	1051246	1052111	1051335		orf19.13685|IPF17073.2|IPF12227.2|Contig4-3056_0033|orf6.21|orf6.5501|CA3274|CaO19.6308|IPF12227.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1051507	1051805	+	ntar_1271	1051507	1051805	1	1051507	1051805					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1052080	1053636	-	orf19.6307	1052080	1053636	1	1053636	1052080	1053468	1052080		orf19.13684|IPF20829.1|IPF19982.1|Contig4-3056_0034|Contig4-3056_0035|orf6.5500|CA3273|CaO19.6307|CaO19.13684|IPF12227.5f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chrR	1054024	1054182	-	ntar_1272	1054024	1054182	1	1054182	1054024					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1054386	1056134	-	orf19.6306	1054386	1056134	1	1056134	1054386	1055989	1054484		orf19.13683|IPF20826.1|IPF12224.2|Contig4-3056_0038|orf6.5499|CA3272|CaO19.6306|ALD4|CaO19.13683	Trimethylaminobutyraldehyde dehydrogenase, the third enzyme of the carnitine biosynthesis pathway [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1056796	1058176	+	orf19.6305	1056796	1058176	1	1056796	1058176	1056992	1058101		orf19.13682|IPF20831.1|IPF12223.2|Contig4-3056_0040|orf6.5498|CA3271|CaO19.13682|GLY12|CaO19.6305|GLY2	Hydroxytrimethyllysine aldolase, the second enzyme in the carnitine biosynthesis pathway [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1058343	1059523	+	orf19.6304	1058343	1059523	1	1058343	1059523	1058347	1059336	LYS5	orf19.13681|orf6.5497|IPF20830.1|IPF12222.2|Contig4-3056_0041|CA3270|CaO19.6304|CaO19.13681	Phosphopantetheinyl transferase; enzyme of lysine biosynthesis; modifies, and thereby activates, Lys2p alpha-aminoadipate reductase; functional homolog of S. cerevisiae Lys5p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1058663	1058880	-	ntar_1273	1058663	1058880	1	1058880	1058663					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1059980	1060825	-	orf19.6302	1059980	1060825	1	1060825	1059980	1060825	1059980	PGA39	orf19.13679|IPF20832.1|IPF12221.2|Contig4-3056_0043|orf6.5495|CA3269|CaO19.6302|CaO19.13679|IPF12221	Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	1062851	1064347	+	orf19.1803	1062851	1064347	1	1062851	1064347	1062991	1064145	CDC43	orf19.9369|IPF14866.2|IPF19031.1|Contig4-2476_0003|orf6.1162|orf6.1576|CA0571|CaO19.1803	Beta subunit of heterodimeric protein geranylgeranyltransferase type I; GGTase I enzyme binds zinc, is Mg-dependent; Cdc42p is GGTase I substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	1063497	1064260	-	ntar_1274	1063497	1064260	1	1064260	1063497	1063631	1063497			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1064571	1065906	+	orf19.1804	1064571	1065906	1	1064571	1065906	1064655	1065743		orf19.9370|IPF18938.1|IPF14864.1|Contig4-2476_0004|orf6.1161|orf6.1577|CA0572|CaO19.1804|IPF14864	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1066099	1067723	+	orf19.1805	1066099	1067723	1	1066099	1067723	1066201	1067559	PEX14	orf19.9371|IPF15186.2|IPF14862.2|Contig4-2476_0006|orf6.1160|orf6.1578|CA0573	Protein not essential for viability; similar to S. cerevisiae Pex14p, which is a peroxisomal protein involved in import of peroxisomal matrix proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1067404	1067548	-	ntar_1275	1067404	1067548	1	1067548	1067404					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1068806	1069882	+	orf19.1806	1068806	1069882	1	1068806	1069882	1068806	1069882		orf19.9373|IPF15183.2|IPF29302.1|Contig4-2476_0010|orf6.1580|CA0574|CaO19.1806|CaO19.9373|IPF15183	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chrR	1070617	1073973	+	orf19.1808	1070617	1073973	1	1070617	1073973	1070731	1073841		orf19.8246|orf19.9375|IPF25517.1|IPF15178.2|IPF26665.1|IPF11378.2|Contig4-2129_0007|orf6.443|orf6.1582|CA0575|CA0080|orf19.632|CaO19.9375|CaO19.1808|IPF15178.5eoc|IPF15178	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	1073701	1074987	-	orf19.633	1073701	1074987	1	1074987	1073701	1074798	1073887		IPF26671.1|IPF11379.2|IPF19271.1|Contig4-2129_0003|orf6.444|CA0081|IPF11379	Protein described as a putative methyltransferase; decreased expression in hyphae compared to yeast-form cells; expression regulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1075536	1076405	-	orf19.634	1075536	1076405	1	1076405	1075536	1076405	1075536		orf19.8247|IPF11382.3|IPF29754.1|Contig4-2129_0005|orf6.445|orf6.71|CA0009|CaO19.634|IPF11382|IPF11382.2	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1077795	1078376	-	orf19.635	1077795	1078376	1	1078376	1077795	1078376	1077795		orf19.8248|IPF26674.1|IPF11384.2|Contig4-2448_0015|orf6.3522|CA1843|CaO19.635|IPF11364	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1079980	1080807	-	orf19.654	1079980	1080807	1	1080807	1079980	1080807	1079980		orf19.8268|IPF19930.2|orf6.765|CA1844|CIS305|CaO19.654|IFL5.3|IPF19930.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1081731	1082057	-	orf19.653	1081731	1082057	1	1082057	1081731	1082057	1081731		IPF29760.1|CaO19.653	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1081927	1084171	+	orf19.652	1081927	1084171	1	1081927	1084171	1082058	1084112		orf19.8267|IPF11388.2|IPF16500.2|Contig4-2448_0006|orf6.3530|orf6.764|CA0176|CaO19.652|IPF11388	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1084329	1086052	+	orf19.651	1084329	1086052	1	1084329	1086052	1084370	1085959	LYP1	orf19.8266|IPF19150.2|IPF16499.2|Contig4-2448_0003|orf6.3531|orf6.763|CA1853|CaO19.651	Predicted ORF in Assemblies 19, 20 and 21; amphotericin B induced; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1086690	1086908	-	ntar_1276	1086690	1086908	1	1086908	1086690					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1087213	1090337	+	orf19.649	1087213	1090337	1	1087213	1090337	1087289	1090201		orf19.8264|IPF26659.1|IPF12611.2|orf6.3533|CA1854|CaO19.649|CaO19.8264|IPF12611	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1090337	1091533	-	ntar_1277	1090337	1091533	1	1091533	1090337	1090785	1090576			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1090520	1091983	+	orf19.647.3	1090520	1091983	1	1090520	1091983	1091608	1091907		IPF26685.1|IPF29762.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1095403	1096787	+	orf19.646	1095403	1096787	1	1095403	1096787	1095525	1096646	GLN1	orf19.8260|IPF19831.2|IPF15149.2|Contig4-2298_0010|orf6.2713|orf6.313|orf6.3536|CA1855|CaO19.646	Protein described as similar to glutamate synthase; regulated by Tsa1p, Tsa1Bp under H2O2 stress conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1098971	1099068	+	th(gug)1	1098971	1099068	2	1098971|1099034	1099007|1099068				tH(GUG)1.2	tRNA-His predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1099522	1101308	+	orf19.645.1	1099522	1101308	2	1099522|1099720	1099652|1101308	1099638	1101114		IPF10175.2|IPF17304.3|Contig4-2707_0002|CA6176|VMA13	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1101428	1103400	-	orf19.644	1101428	1103400	4	1103400|1102325|1102215|1101840	1102403|1102325|1101906|1101428	1103400	1101428	HGT9	orf19.8258|orf19.8259|HXT4|IPF26668.1|IPF10171.1|Contig4-2707_0003|Contig4-2707_0004|Contig4-2707_0005|orf6.2714|orf6.2715|CA1281|orf19.645|orf19.644.1|IPF10171|CA1282|IPF10171.exon2|IPF10173.2|CA1283|IPF10171.exon1|IPF10171.exon3|IPF10174.2	[NOT TRANSCRIBED?] Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; induced at low (0.2%, compared to 2%) glucose in rich media; intron [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1105224	1109200	+	orf19.643	1105224	1109200	1	1105224	1109200	1105224	1109060		orf19.8257|IPF10168.1|IPF29758.1|Contig4-2707_0008|orf6.2716|CA1284|CaO19.643|IPF10168|IPF10168.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1110217	1113399	+	orf19.642	1110217	1113399	1	1110217	1113399	1110509	1113283		orf19.8256|IPF26660.1|IPF14629.1|Contig4-2852_0018|orf6.3529|CA1851|SAP155|CaO19.642|CaO19.8256|IPF14629	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1113274	1114315	-	orf19.641	1113274	1114315	1	1114315	1113274	1114255	1113353		orf19.8255|IPF26669.1|IPF14630.2|Contig4-2852_0017|orf6.3528|CA1850|CaO19.8255|ERJ5|CaO19.641|IPF14630	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1113590	1113781	+	ntar_1278	1113590	1113781	1	1113590	1113781					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1114371	1115300	+	orf19.640	1114371	1115300	1	1114371	1115300	1114462	1115175		orf19.8254|IPF26672.1|IPF19932.1|Contig4-2852_0015|orf6.3527|CA1849|CaO19.640|CaO19.8254|IPF19932	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1115333	1116006	+	orf19.639.1	1115333	1116006	1	1115333	1116006	1115396	1115671		IPF26682.1|IPF11128.1|Contig4-2852_0014|CA1848|IPF11128	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1115603	1116887	-	orf19.639	1115603	1116887	1	1116887	1115603	1116887	1115691		orf19.8253|IPF26666.1|IPF11127.1|Contig4-2852_0013|orf6.3526|CA1847|CaO19.639|CaO19.8253|IPF11127	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1116944	1118471	-	orf19.638	1116944	1118471	1	1118471	1116944	1118217	1117078	FDH1	orf19.8252|FDH12|IPF26667.1|IPF11124.1|Contig4-2852_0012|orf6.3525|CA1846|CaO19.638|FDH99|CaO19.8252	Putative formate dehydrogenase, oxidizes formate to produce CO2; induced during macrophage infection; fluconazole-downregulated; Mig1p regulated; downregulated by Efg1p under yeast, not hyphal, growth conditions; predicted to be cytosolic [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1119156	1119574	+	ntar_1279	1119156	1119574	1	1119156	1119574					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1119434	1120537	-	orf19.637	1119434	1120537	1	1120537	1119434	1120441	1119650	SDH2	orf19.8251|orf6.3524|IPF26670.1|IPF11123.1|Contig4-2852_0010|CA1845|CaO19.8251|CaO19.637|IPF11123	Succinate dehydrogenase, Fe-S subunit; localizes to surface of yeast-form cells, but not hyphae; transcriptionally regulated by iron; expression greater in high iron; repressed by nitric oxide; induced during log phase (aerobic growth) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1120666	1121060	+	ntar_1280	1120666	1121060	1	1120666	1121060					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1122196	1123023	+	orf19.555	1122196	1123023	1	1122196	1123023	1122196	1123023		orf19.8190|orf19.8250|orf6.362|IPF26750.1|IPF20036.1|IPF29759.1|IPF26680.1|IPF19931.2|Contig4-2448_0010|Contig4-2852_0008|orf6.3523|orf6.765|CA0177|orf19.635.1|orf19.636|CIS304|CaO19.8190|CaO19.555|IFL2|IPF20048.1	Protein similar to S. cerevisiae Cis3p, which has a role cell-wall-related processes; predicted Kex2p substrate [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1123938	1124758	-	orf19.556	1123938	1124758	1	1124758	1123938	1124646	1124227		orf19.8191|IPF26752.1|IPF15839.1|Contig4-2852_0004|orf6.363|CA0056|CaO19.8191|CaO19.556|IPF15839	Predicted ORF in Assemblies 19, 20 and 21; regulated by Ssn6p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1125596	1126887	+	orf19.557	1125596	1126887	1	1125596	1126887	1125729	1126754		orf19.8192|IPF19891.2|IPF29785.1|Contig4-2852_0001|orf6.2136|CA0928|CaO19.557|IPF19891|IPF19891.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1126728	1129002	-	orf19.558	1126728	1129002	1	1129002	1126728	1128907	1127012	GUT1	orf19.8193|IPF26747.1|IPF3751.2|orf6.2137|CA0929|CaO19.8193|CaO19.558	Protein described as glycerol kinase; downregulated upon adherence to polystyrene; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1129305	1132754	-	orf19.559	1129305	1132754	1	1132754	1129305	1132754	1129305	FGR14	orf19.8194|IPF26753.1|IPF3750.2|Contig4-3107_0004|orf6.2138|CA0930|CaO19.8194|POL92|CaO19.559|Zorro1a	Protein encoded in retrotransposon Zorro3 with similarity to retroviral endonuclease-reverse transcriptase proteins; lacks an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1132929	1134755	-	orf19.562	1132929	1134755	1	1134755	1132929	1134755	1132929	FGR13	orf19.8197|orf19.8621|IPF26285.1|IPF19213.1|IPF26748.1|IPF3748.2|Contig4-2885_0021|Contig4-3028_0029|orf6.2141|orf6.614|CA0931|orf19.1006|CaO19.8197|CaO19.562|IPF3748	Protein encoded in retrotransposon Zorro3 with a potential zinc finger; lacks an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1134655	1134908	+	ntar_1281	1134655	1134908	1	1134655	1134908	1134705	1134863			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1135076	1135373	+	ntar_1282	1135076	1135373	1	1135076	1135373					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1135305	1136529	-	orf19.1007	1135305	1136529	1	1136529	1135305	1136506	1135448		orf19.8622|IPF26283.1|IPF3746.1|Contig4-3028_0026|orf6.613|CA0133|KCS1|CaO19.1007|CaO19.8622|IPF3746	Putative transcription factor with bZIP DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1136826	1137140	+	orf19.1008	1136826	1137140	1	1136826	1137140	1136826	1137140		IPF29604.1|Contig4-3028_0025|orf6.612|CaO19.1008	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1137127	1137447	+	orf19.1009	1137127	1137447	1	1137127	1137447				IPF26287.1|Contig4-3028_0022|Contig4-3028_0024|orf6.611|CaO19.1009	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1138095	1139569	+	orf19.1010	1138095	1139569	1	1138095	1139569	1138164	1139300	MNT3	orf19.8624|KTR1|IPF19565.2|IPF29601.1|Contig4-3028_0019|orf6.2170|orf6.220|KTR3|CA0033|CaO19.1010|CA0952|MNT3.3eoc|IPF19564.1	Protein with similarity to mannosyltransferases; transcription is elevated in cyr1, chk1, nik1, and sln1 homozygous null mutants; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1139044	1141777	-	orf19.1011	1139044	1141777	1	1141777	1139044	1141357	1139375		orf19.8625|IPF26282.1|IPF3740.1|Contig4-3028_0018|orf6.2169|CA0951|MNN21|CaO19.8625|CaO19.1011|MNN6	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1142460	1143539	+	orf19.1012	1142460	1143539	1	1142460	1143539	1142648	1143109		orf19.8626|IPF26284.1|IPF3737.2|Contig4-3028_0013|orf6.2168|CA0950|APS1|CaO19.1012|CaO19.8626|IPF3737	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1145904	1146425	-	orf19.5289	1145904	1146425	1	1146425	1145904	1146425	1146111		orf19.8627|IPF26286.1|IPF29603.1|IPF27470.1|orf6.2167|orf6.3828|orf19.1013|CaO19.5289	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1146120	1146682	+	ntar_1283	1146120	1146682	1	1146120	1146682	1146391	1146618			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1146943	1147922	+	orf19.5288.1	1146943	1147922	1	1146943	1147922	1147642	1147827			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1148166	1148494	+	ntar_1284	1148166	1148494	1	1148166	1148494					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1148323	1149996	-	orf19.5288	1148323	1149996	1	1149996	1148323	1149961	1148654	IFE2	IPF3735.1|Contig4-3028_0005|orf6.3827|YAL60|CA2075|CaO19.5288|BDH2	Protein described as an alcohol dehydrogenase; decreased expression in hyphae compared to yeast-form cells; Efg1p-regulated; fluconazole-induced; Hog1p-induced; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1150627	1151480	+	ntar_1285	1150627	1151480	1	1150627	1151480	1150627	1150830			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1151582	1152103	+	ntar_1286	1151582	1152103	1	1151582	1152103					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1151736	1153484	-	orf19.5287	1151736	1153484	1	1153484	1151736	1153364	1151805		IPF3733.2|Contig4-3028_0003|orf6.3826|CA2074|CaO19.5287|IPF3733	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1153857	1155615	+	ntar_1287	1153857	1155615	1	1153857	1155615	1154339	1154500			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1155506	1156622	-	orf19.5286	1155506	1156622	1	1156622	1155506	1156494	1155628	YCP4	IPF27466.1|Contig4-2561_0001|CA6240|CaO19.5286	Putative flavodoxin; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1157944	1158707	+	orf19.5285	1157944	1158707	1	1157944	1158707	1158020	1158619	PST3	IPF27467.1|Contig4-2561_0001|CA6239|CaO19.5285|PST2	Putative flavodoxin; biofilm induced; fungal-specific (no human or murine homolog); protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1158902	1158997	-	tr(acg)2	1158902	1158997	2	1158997|1158937	1158962|1158902					tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1159028	1159121	-	tr(acg)1	1159028	1159121	2	1159121|1159063	1159086|1159028					tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1160082	1160396	+	orf19.5284	1160082	1160396	1	1160082	1160396	1160082	1160396		IPF27500.1|IPF27469.1|orf6.1943|orf19.3510|CaO19.5284	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1160503	1161567	+	orf19.3512	1160503	1161567	1	1160503	1161567	1160503	1161567		IPF12574.2|IPF27468.1|Contig4-2428_0001|orf6.1945|CA0803|orf19.5283|CIS310|CaO19.3512|IFL4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	1161999	1162806	+	orf19.3515	1161999	1162806	1	1161999	1162806	1162068	1162583		IPF12570.2|Contig4-2428_0007|CA0804|CaO19.3515|BNA1|orf6.1948	Putative 3-hydroxyanthranilic acid dioxygenase, involved in NAD biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1162553	1163402	-	orf19.3516	1162553	1163402	1	1163402	1162553	1163343	1162696		IPF12568.1|Contig4-2428_0008|CA0805|CaO19.3516|IPF12568|orf6.1949	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1163490	1164571	+	orf19.3517	1163490	1164571	1	1163490	1164571	1163640	1164479		IPF12567.2|Contig4-2428_0011|CA0806|CaO19.3517|IPF12567|orf6.1950	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1164086	1164787	-	ntar_1288	1164086	1164787	1	1164787	1164086	1164787	1164656			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1165669	1166851	+	orf19.3518	1165669	1166851	1	1165669	1166851	1165925	1166785		ODC1|IPF12564.1|Contig4-2428_0014|CA0807|CaO19.3518|IPF12564|orf6.1951	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1167166	1168675	+	orf19.3519	1167166	1168675	1	1167166	1168675	1167518	1168558	SUA72	orf19.13275|IPF12563.1|IPF21365.1|IPF3791.2|Contig4-2428_0015|orf6.4955|CA0808|orf19.5853|CaO19.3519|SUA71|orf6.1952	Predicted transcriptional regulator; induced during planktonic growth, whereas related SUA71 is downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1168480	1171439	-	orf19.5852	1168480	1171439	1	1171439	1168480	1171268	1168632		orf19.13274|IPF12562.2|IPF21357.1|IPF3790.1|Contig4-2975_0001|Contig4-2975_0002|orf6.1953|orf6.4954|CA2883|orf19.3520|CaO19.5852|CaO19.13274|IPF3790	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1171749	1174697	+	orf19.5851	1171749	1174697	1	1171749	1174697	1171860	1174652	STE13	orf19.13273|orf6.4953|IPF21356.1|IPF3786.1|Contig4-2975_0004|CA2882|CaO19.5851|CaO19.13273	Protein similar to S. cerevisiae Ste13p, which is a pheromone-processing dipeptidyl aminopeptidase; possible Kex2p substrate; transposon mutation affects filamentous growth; induced by low nitrogen, germ tube formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1174823	1177098	+	orf19.5850	1174823	1177098	1	1174823	1177098	1174845	1176989	NOC2	orf19.13272|IPF21359.1|IPF3784.1|Contig4-2975_0006|orf6.4952|RAD4|CA2881|CaO19.13272|CaO19.5850	Protein similar to S. cerevisiae Noc2p; transposon mutation affects filamentous growth; mutation confers hypersensitivity to 5-fluorouracil (5-FU), tubercidin (7-deazaadenosine); downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1177023	1178988	-	orf19.5849	1177023	1178988	1	1178988	1177023	1178837	1177101	CWT1	orf19.13271|IPF21361.1|IPF3781.2|Contig4-2975_0008|Contig4-2975_0009|orf6.4951|CA2880|CaO19.13271|CaO19.5849|IPF3781	Putative transcription factor; mutant has cell wall defects; transcription increased at stationary phase; has predicted PAS domain and Zn(II) Cys(6)-type DNA-binding region; similar to S. cerevisiae Rds2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1179205	1181342	-	orf19.5848	1179205	1181342	1	1181342	1179205	1181206	1179341		orf19.13270|IPF21360.1|IPF3779.1|Contig4-2975_0013|orf6.4950|CA2879|CaO19.5848|CaO19.13270|IPF3779	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1181681	1185305	-	orf19.5847	1181681	1185305	1	1185305	1181681	1185262	1181789		orf19.13269|IPF21366.1|IPF3777.1|Contig4-2975_0014|orf6.4949|CA2878|CaO19.5847|COP1|CaO19.13269|RET1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1185414	1187412	+	orf19.5846	1185414	1187412	1	1185414	1187412	1185551	1187035		orf19.13268|IPF21363.1|IPF3776.1|Contig4-2975_0016|orf6.4948|CA2877|TFB2|CaO19.13268|CaO19.5846	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1187101	1189708	-	orf19.5845	1187101	1189708	1	1189708	1187101	1189667	1187217	RNR3	orf19.13267|orf6.4947|IPF21358.1|IPF3774.2|Contig4-2975_0017|Contig4-2975_0020|CA2876|RNR2|CaO19.5845|CaO19.13267	Protein described as large subunit of ribonucleotide reductase; transcriptionally regulated by iron; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1190064	1190691	-	orf19.5844	1190064	1190691	2	1190691|1190575	1190649|1190064	1190691	1190064		orf19.13266|IPF3772.1|IPF17969.2|Contig4-2975_0022|Contig4-3035_0025|orf6.114|orf6.4946|CA2875|CaO19.5844|MEI5	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1190811	1190905	-	tc(gca)2	1190811	1190905	2	1190905|1190846	1190869|1190811				tC(GCA)2.2	tRNA-Cys predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1190983	1191080	-	tc(gca)1	1190983	1191080	2	1191080|1191018	1191044|1190983				tC(GCA)1.2	tRNA-Cys predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1193369	1193518	+	ntar_1289	1193369	1193518	1	1193369	1193518					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1193726	1195281	-	orf19.5843	1193726	1195281	1	1195281	1193726	1194904	1194056		orf19.13265|IPF21364.1|IPF4999.2|Contig4-3035_0022|orf6.4945|CA2874|CaO19.5843|IPF4999	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1198683	1200647	-	orf19.6653	1198683	1200647	1	1200647	1198683	1200535	1198889		orf19.13974|IPF20507.1|IPF5002.2|Contig4-3035_0017|orf6.6550|CA4093|CaO19.6653|CaO19.13974|IPF5002	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1201092	1202706	+	orf19.6652	1201092	1202706	1	1201092	1202706	1201128	1202450	DBP8	orf19.13973|IPF20514.1|IPF5004.1|Contig4-3035_0015|orf6.6549|CA4092|CaO19.6652|CaO19.13973	Protein likely to be essential for growth, based on insertional mutagenesis; similar to S. cerevisiae Dbp8p, which is an ATP-dependent helicase involved in rRNA processing; oxidative stress-repressed via Cap1p; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1202343	1203114	-	orf19.6650	1202343	1203114	1	1203114	1202343	1203045	1202470		orf19.13971|IPF20525.1|IPF5005.2|Contig4-3035_0014|orf6.6547|CA4091|CaO19.6650|CaO19.13971|IPF5005	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1203215	1205086	+	orf19.6649	1203215	1205086	1	1203215	1205086	1203310	1204971	BRF1	orf19.13970|IPF20505.1|IPF5007.2|Contig4-3035_0013|orf6.6546|CA4090|CaO19.6649|CaO19.13970	Component of the general transcription factor for RNA polymerase III (TFIIIB) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1205191	1207649	+	orf19.6648	1205191	1207649	1	1205191	1207649	1205251	1207530	SDA1	orf19.13969|IPF20503.1|IPF5009.2|Contig4-3035_0012|orf6.6545|CA4089|CaO19.13969|CaO19.6648|IPF5009	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1207542	1208448	-	orf19.6645	1207542	1208448	1	1208448	1207542	1208448	1207777	HMO1	orf19.13966|YDR174|IPF20515.1|IPF5011.2|Contig4-3035_0011|orf6.6542|CA4088|CaO19.6645|CaO19.13966	High mobility group-like protein; activates pseudohyphal growth when expressed in S. cerevisiae; decreased expression in hyphae compared to yeast-form cells; amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1208480	1208878	-	orf19.6644	1208480	1208878	1	1208878	1208480	1208878	1208480		orf19.13965|IPF20528.1|IPF5012.1|orf6.6541|CaO19.13965|CaO19.6644	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1209184	1210579	+	orf19.6643	1209184	1210579	1	1209184	1210579	1209498	1210523	MCT1	orf19.13964|IPF20516.1|IPF5013.1|Contig4-3035_0008|Contig4-3035_0009|orf6.6540|CA4087|CaO19.6643|CaO19.13964|IPF5013	Putative malonyl-CoA acyl carrier protein acyltransferase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1210458	1211701	-	orf19.6642	1210458	1211701	1	1211701	1210458	1211608	1210706		orf19.13963|IPF20521.1|IPF5014.2|Contig4-3035_0007|orf6.6539|CA4086|YIF1|CaO19.6642|CaO19.13963|IPF5014	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1211820	1213417	-	orf19.6641	1211820	1213417	1	1213417	1211820	1212791	1211934		orf19.13962|IPF20520.1|IPF5015.2|Contig4-3035_0006|orf6.6538|CA4085|LPF41|CaO19.13962|CaO19.6641|IPF5015	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1213651	1215344	+	orf19.6640	1213651	1215344	1	1213651	1215344	1213719	1215155	TPS1	orf19.13961|IPF20512.1|IPF5016.2|Contig4-3035_0004|Contig4-3035_0005|orf6.6537|CA4084|CaO19.6640|CaO19.13961	Trehalose-6-phosphate synthase; role in hyphal growth and virulence in mouse systemic infection; upregulated in presence of human neutrophils; macrophage/pseudohyphal-repressed after 16h; detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1215244	1217084	-	orf19.6639	1215244	1217084	1	1217084	1215244	1216834	1215374		orf19.13960|IPF20511.1|IPF5018.2|Contig4-3035_0003|orf6.6536|CA4083|CaO19.13960|CaO19.6639|IPF5018	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1217559	1219257	-	orf19.6638	1217559	1219257	1	1219257	1217559	1218941	1217904	PTC4	orf19.13959|IPF20517.1|IPF15571.2|Contig4-2856_0010|orf6.6535|CA4082|CaO19.13959|CaO19.6638	Protein described as a serine/threonine phosphatase, type PP2C; decreased expression in hyphae compared to yeast-form cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1219806	1221149	+	orf19.6637	1219806	1221149	1	1219806	1221149	1220015	1221043		orf19.13958|IPF20518.1|IPF2523.2|Contig4-2856_0009|orf6.6534|CA4081|CaO19.13958|CaO19.6637|IPF2523	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1220037	1220301	-	ntar_1290	1220037	1220301	1	1220301	1220037	1220301	1220158			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1220898	1222132	-	orf19.6636	1220898	1222132	1	1222132	1220898	1222081	1221086		orf19.13957|IPF20519.1|IPF2524.2|Contig4-2856_0008|orf6.6533|CA4080|CaO19.6636|CaO19.13957|IPF2524	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1222393	1224013	+	orf19.6635	1222393	1224013	1	1222393	1224013	1222438	1223952		orf19.13956|IPF20510.1|IPF2527.2|Contig4-2856_0006|Contig4-2856_0007|orf6.6532|CA4079|CaO19.13956|CaO19.6635|IPF2527	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1224180	1225949	+	orf19.6634	1224180	1225949	1	1224180	1225949	1224281	1225819	VMA2	orf19.13955|IPF20509.1|IPF2528.1|Contig4-2856_0005|orf6.6531|CA4078|CaO19.6634|CaO19.13955	Predicted ORF in Assemblies 19, 20 and 21; amphotericin B repressed, caspofungin repressed; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1225864	1228402	-	orf19.6632	1225864	1228402	1	1228402	1225864	1228352	1225977	ACO2	orf19.13953|orf6.6529|IPF20499.1|IPF2530.2|Contig4-2856_0004|CA4077|CaO19.13953|CaO19.6632	Protein described as aconitate hydratase 2; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1228565	1229131	-	orf19.6630	1228565	1229131	1	1229131	1228565	1229098	1228694		IPF2532.2|IPF27678.1|Contig4-2856_0002|Contig4-2856_0003|orf6.1187|orf6.6527|CA0356|CaO19.6630|IPF2532	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1229519	1229609	-	tp(ugg)5	1229519	1229609	2	1229609|1229554	1229574|1229519				tP(UGG)5.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1230106	1230196	-	tp(ugg)4	1230106	1230196	2	1230196|1230141	1230161|1230106				tP(UGG)4.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1230645	1232244	-	orf19.6629	1230645	1232244	1	1232244	1230645	1232111	1230795	ISC1	orf19.13950|IPF2542|IPF18948.2|IPF2542.2|Contig4-2480_0005|orf6.1512|orf6.6526|CA4076|CaO19.6629	Putative phospholipase C, possible neutral sphingomyelinase; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1232317	1233176	+	orf19.6628	1232317	1233176	1	1232317	1233176	1232369	1233088		orf19.13949|IPF18949.2|IPF2555.2|Contig4-2675_0011|orf6.6525|CA4075|CaO19.6628|IPF2555	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1233262	1233335	+	tv(aac)4	1233262	1233335	1	1233262	1233335				tV(AAC)4.2	tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1233687	1234574	+	orf19.6627	1233687	1234574	1	1233687	1234574	1233786	1234466		orf19.13948|IPF20523.1|IPF2557.2|Contig4-2675_0010|orf6.6524|CA4074|CaO19.6627|CaO19.13948|IPF2557	Predicted ORF in Assemblies 19, 20 and 21; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1234648	1234729	+	ts(aga)3	1234648	1234729	1	1234648	1234729				tS(AGA)3.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1234787	1235820	+	orf19.6626	1234787	1235820	1	1234787	1235820	1235065	1235691		orf19.13947|IPF20524.1|IPF2559.1|Contig4-2675_0008|orf6.6523|CA4073|CaO19.13947|CaO19.6626|IPF2559.3	Predicted ORF in Assemblies 19, 20 and 21; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1235648	1236781	-	orf19.6625	1235648	1236781	1	1236781	1235648	1236650	1235823		orf19.13946|IPF20522.1|IPF2560.1|Contig4-2675_0007|orf6.6522|CA4072|CaO19.6625|CaO19.13946|IPF2560	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1236858	1238504	+	orf19.6624	1236858	1238504	1	1236858	1238504	1236957	1238465		orf19.13945|IPF20508.1|IPF2561.2|Contig4-2675_0004|orf6.6521|CA4071|CaO19.6624|GYP6|CaO19.13945|IPF2561	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1238641	1239406	+	orf19.6623	1238641	1239406	1	1238641	1239406	1238690	1239076		orf19.13944|IPF20532.1|IPF2562.1|Contig4-2675_0003|orf6.6520|CA4070|CaO19.6623|CaO19.13944|IPF2562	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1239119	1243041	-	orf19.6621	1239119	1243041	1	1243041	1239119	1242892	1239263	MHP1	orf19.13942|orf19.8092|IPF26876.1|IPF18690.1|IPF20500.1|IPF2566.2|Contig4-2675_0002|orf6.2853|orf6.6518|CA1377|CA4069|orf19.461|CaO19.13942|CaO19.6621	Protein similar to S. cerevisiae Mhp1p, which is involved in microtubule stabilization; transposon mutation affects filamentous growth; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1243153	1243842	-	ts(aga)1	1243153	1243842	1	1243842	1243153				tS(AGA)1.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1244448	1245813	+	orf19.460	1244448	1245813	1	1244448	1245813	1244582	1245700	CEK2	orf19.8091|FUS3|IPF26875.1|IPF2568.2|ERK2|Contig4-2547_0006|orf6.2854|CA1378|CaO19.8091|CaO19.460	MAP kinase required for wild-type efficiency of mating; component of the signal transduction pathway that regulates mating; ortholog of S. cerevisiae Fus3p; induced by Cph1p, pheromone; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1245712	1249231	-	orf19.459	1245712	1249231	1	1249231	1245712	1248992	1245876	ADP1	orf19.8090|IPF26903.1|IPF2572.2|Contig4-2547_0007|Contig4-2547_0008|orf6.2855|CA1379|CaO19.459|CaO19.8090	Putative PDR-subfamily ABC transporter; similar to WHITE subfamily proteins; gene used for strain identification by multilocus sequence typing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1249417	1250032	+	orf19.458.1	1249417	1250032	1	1249417	1250032	1249616	1249891			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1249765	1251317	-	orf19.458	1249765	1251317	1	1251317	1249765	1251275	1249941		orf19.8089|IPF18974.2|IPF2574.2|Contig4-2758_0012|orf6.1428|orf6.2856|CA1380|BCS1|CaO19.458	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1251476	1255565	+	orf19.457	1251476	1255565	1	1251476	1255565	1251543	1255457		orf19.8088|IPF2578.1|IPF29835.1|orf6.1427|orf6.2857|CA0476|UBP2|CaO19.457	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1255619	1258939	-	orf19.454	1255619	1258939	1	1258939	1255619	1258160	1255743	SFL1	orf19.8085|IPF2580.3|IPF29823.1|Contig4-2758_0008|orf6.1424|orf6.508|CA0475|CaO19.454|IPF2580|IPF2580.2	Protein involved in negative regulation of flocculation and filamentous growth; induced in core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1259080	1259417	-	ntar_1291	1259080	1259417	1	1259417	1259080					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1259899	1260287	-	ntar_1292	1259899	1260287	1	1260287	1259899					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1272810	1273377	+	ntar_1293	1272810	1273377	1	1272810	1273377					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1273601	1276804	+	orf19.451	1273601	1276804	1	1273601	1276804	1274197	1276674	SOK1	orf19.8081|IPF26853.1|IPF13595.2|Contig4-2243_0005|orf6.3088|CA1536|CaO19.451|CaO19.8081	Transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1277550	1277760	+	ntar_1294	1277550	1277760	1	1277550	1277760					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1278472	1280055	+	orf19.3848	1278472	1280055	1	1278472	1280055	1278595	1279887		orf19.11329|IPF16305.2|IPF17469.2|Contig4-2243_0004|orf6.2309|orf6.545|CA1031|CaO19.3848|IPF17469	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1280720	1282321	+	orf19.3851	1280720	1282321	1	1280720	1282321	1281002	1282129		orf19.11332|IPF16308.2|IPF28608.1|Contig4-2454_0005|orf6.2312|orf6.542|CA0106|CaO19.3851|IPF16308	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1282627	1285360	+	ntar_1295	1282627	1285360	1	1282627	1285360	1283992	1284174			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1282658	1285045	-	orf19.3852	1282658	1285045	1	1285045	1282658	1285045	1282658		orf19.11333|IPF23377.1|IPF19896.1|Contig4-2454_0004|orf6.2313|CA1032|CaO19.11333|CaO19.3852|IPF19896	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1290136	1292834	+	orf19.3854	1290136	1292834	1	1290136	1292834	1290799	1292691		orf19.11335|IPF11548.1|IPF17644.2|Contig4-3046_0003|orf6.290|orf6.5244|CA3094|SAT4|CaO19.3854|IPF11548	Protein similar to S. cerevisiae Sat4p; amphotericin B induced; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1293184	1294666	+	orf19.3856	1293184	1294666	2	1293184|1293446	1293354|1294666	1293485	1294438	CDC28	orf19.11337|CDK1|IPF23400.1|IPF11549.2|Contig4-3046_0004|orf6.5246|CA3095|CaO19.3856|CaO19.11337	Cyclin-dependent protein kinase, interacts with regulatory subunit Cyb1p; involved in determination of cell morphology during the cell cycle; phosphorylated primarily by Swe1p and phosphorylation is regulated by Hsl1p; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1295060	1295919	+	orf19.3858	1295060	1295919	1	1295060	1295919	1295093	1295866		orf19.11339|IPF23404.1|IPF11551.2|Contig4-3046_0005|orf6.5248|CA3096|CaO19.3858|CaO19.11339|IPF11551	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1295933	1297285	+	orf19.3859	1295933	1297285	1	1295933	1297285	1295933	1297159		orf19.11340|IPF6600|IPF23395.1|IPF6600.2|Contig4-3046_0006|orf6.5249|CA3097|CaO19.11340|CaO19.3859	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in response to treatment with ciclopirox olamine; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1296523	1296731	-	ntar_1296	1296523	1296731	1	1296731	1296523					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1297006	1297235	-	ntar_1297	1297006	1297235	1	1297235	1297006					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1297457	1298689	+	orf19.3861	1297457	1298689	1	1297457	1298689	1297556	1298587	SIS1	orf19.11342|IPF23398.1|IPF6598.2|Contig4-3046_0007|orf6.5251|CA3098|CaO19.3861|CaO19.11342	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed; heavy metal (cadmium) stress-induced; heterozygous null mutant displays sensitivity to virgineone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1298865	1300086	+	orf19.3862	1298865	1300086	1	1298865	1300086	1298929	1299915		orf19.11343|IPF23399.1|IPF6595.2|Contig4-3046_0009|orf6.5252|CA3099|CaO19.3862|LST8|CaO19.11343	Predicted ORF in Assemblies 19, 20 and 21; heterozygous null mutant displays sensitivity to rapamycin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1299995	1301887	-	orf19.3863	1299995	1301887	1	1301887	1299995	1301887	1299995		orf19.11344|IPF23384.1|IPF6594.2|Contig4-3046_0010|orf6.5253|CA3100|CaO19.11344|CaO19.3863|IPF6594	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1300323	1300581	+	ntar_1298	1300323	1300581	1	1300323	1300581	1300323	1300562			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1301099	1301436	+	ntar_1299	1301099	1301436	1	1301099	1301436					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1302387	1305042	-	orf19.3865	1302387	1305042	1	1305042	1302387	1305024	1302469	RFX1	orf19.11346|IPF23376.1|IPF6593.2|Contig4-3046_0015|orf6.5255|CA3101|CaO19.3865|CaO19.11346|IPF6593	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Rfx1p (DNA-binding transcriptional repressor of DNA damage response); has RFX domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1308681	1309805	+	orf19.3867	1308681	1309805	1	1308681	1309805	1308722	1309609	RPL7	orf19.11348|IPF23401.1|IPF6586.2|Contig4-3046_0019|orf6.5257|CA3102|RLP7|CaO19.3867|CaO19.11348	Putative ribosomal-related protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1309357	1309992	-	ntar_1300	1309357	1309992	1	1309992	1309357	1309881	1309717			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1310734	1310903	+	ntar_1301	1310734	1310903	1	1310734	1310903					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1312182	1312900	-	ntar_1302	1312182	1312900	1	1312900	1312182	1312534	1312334			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1315882	1316235	-	orf19.3868	1315882	1316235	1	1316235	1315882	1316235	1315882		IPF28618.1|Contig4-1686_0002|orf6.1003|CaO19.3868	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1316529	1318794	+	orf19.3869	1316529	1318794	1	1316529	1318794	1316661	1318415		orf19.11350|IPF17190.2|IPF12184.3|Contig4-2055_0006|orf6.550|orf6.5840|CA0110|CaO19.3869|IPF17190	Predicted ORF in Assemblies 19, 20 and 21; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1318738	1320456	-	orf19.3870	1318738	1320456	1	1320456	1318738	1320356	1318908	ADE13	orf19.11351|IPF19233.2|IPF12183.2|Contig4-2055_0002|Contig4-2055_0004|orf6.551|orf6.5841|CA3547|CaO19.3870	Enzyme of adenine biosynthesis; soluble protein in hyphae; not induced during GCN response, in contrast to the S. cerevisiae ortholog; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1320642	1321567	-	orf19.3871	1320642	1321567	1	1321567	1320642	1321396	1320980		orf19.11352|IPF23415.1|IPF12181.1|Contig4-1785_0007|Contig4-2055_0001|orf6.5842|CaO19.3871	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1321723	1322719	+	orf19.3872	1321723	1322719	1	1321723	1322719	1321790	1322578		orf19.11353|IPF23403.1|IPF12179.1|Contig4-1785_0002|orf6.5843|CA3548|CaO19.3872|IPF12179	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1322818	1324261	+	orf19.3873	1322818	1324261	1	1322818	1324261	1322922	1324076	ARC40	orf19.11354|IPF19474.2|IPF12178.1|Contig4-1785_0001|orf6.32|orf6.5844|CA3549|CaO19.3873	Protein similar to S. cerevisiae Arc40p, which is involved in actin filament organization in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1324031	1325071	-	ntar_1430	1324031	1325071	2	1325071|1324164	1324893|1324031					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1326196	1328282	+	orf19.3874	1326196	1328282	1	1326196	1328282	1326372	1328222		orf19.11355|IPF23385.1|IPF13228.2|Contig4-2060_0003|orf6.5845|CA3550|CaO19.3874|CaO19.11355|IPF13228	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1328267	1330158	-	orf19.3876	1328267	1330158	1	1330158	1328267	1330126	1328267		ZCF19|orf19.11357|IPF23387.1|IPF13229.2|orf6.5847|CA3551|CaO19.3876|CaO19.11357|IPF13229	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chrR	1330469	1331724	+	orf19.3877	1330469	1331724	1	1330469	1331724	1330825	1331724		orf19.11358|IPF23396.1|IPF23402.1|IPF13232.2|IPF13231.1|Contig4-2958_0005|Contig4-2958_0006|orf6.5848|orf6.5849|CA3552|IPF13231	Predicted ORF in Assemblies 19, 20 and 21; previously merged with orf19.3878; unmerged from orf19.3878 in a revision of Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1331788	1333089	+	orf19.3878	1331788	1333089	1	1331788	1333089	1331788	1332960		orf19.11359|IPF13232.2|orf6.5849|CA3553|IFA27.5|IFA16.5	Predicted ORF from Assembly 19; merged with orf19.3877 in Assembly 20; unmerged from orf19.3877 in a revision of Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1333707	1333940	+	ntar_1303	1333707	1333940	1	1333707	1333940	1333707	1333940			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1334077	1334646	+	orf19.3879	1334077	1334646	1	1334077	1334646	1334077	1334571		orf19.11360|IPF23388.1|IPF23406.1|IPF7771.2|IPF19992.1|Contig4-2958_0008|orf6.5850	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); overlaps orf19.3879.1, which is a region annotated as blocked reading frame [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1335225	1336490	-	orf19.3881	1335225	1336490	1	1336490	1335225	1336474	1335395		orf19.11362|IPF23397.1|IPF7770.2|Contig4-2958_0010|Contig4-2958_0013|orf6.5852|CA3554|CaO19.3881|CaO19.11362|IPF7770	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1336672	1337495	-	orf19.3884	1336672	1337495	1	1337495	1336672	1337424	1336690	FGR50	orf19.11365|IPF23405.1|IPF7766.2|Contig4-2958_0014|orf6.5855|CA3555|CaO19.3884|CaO19.11365|IPF7766	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1338607	1339843	+	orf19.3885	1338607	1339843	1	1338607	1339843	1338755	1339843		orf19.11366|IPF23394.1|IPF7764.2|Contig4-2958_0018|orf6.5856|CA3556|CaO19.3885|CaO19.11366|IPF7764	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chrR	1339795	1341515	-	orf19.3886	1339795	1341515	1	1341515	1339795	1341404	1340001		orf19.11367|IPF23392.1|IPF7763.2|Contig4-2958_0019|orf6.5857|CA3557|CaO19.11367|CaO19.3886|IPF7763	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1342267	1342935	-	orf19.3887	1342267	1342935	1	1342935	1342267	1342935	1342384		orf19.11368|IPF23408.1|IPF7760.1|Contig4-2958_0022|orf6.5858|CA3558|CaO19.3887|CaO19.11368|IPF7760	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1343044	1344930	-	orf19.3888	1343044	1344930	1	1344930	1343044	1344847	1343195	PGI1	orf19.11369|IPF23389.1|IPF7759.1|Contig4-2958_0024|orf6.5859|CA3559|CaO19.11369|CaO19.3888	Protein described as glucose-6-phosphate isomerase, enzyme of glycolysis; antigenic in human; regulated by Efg1p; induced in biofilm, upon adherence to polystyrene; downregulated in the presence of human neutrophils, upon phagocytosis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1345761	1346004	+	ntar_1304	1345761	1346004	1	1345761	1346004	1345761	1345910			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1346101	1346388	-	orf19.3888.2	1346101	1346388	1	1346388	1346101	1346388	1346101		IPF23413.1|IPF7757.1|Contig4-2958_0027|orf6.968	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1348994	1350532	-	orf19.727	1348994	1350532	1	1350532	1348994	1350532	1348994		orf19.8346|IPF26578.1|IPF20143.1|Contig4-1855_0001|orf6.6016|CA3682|CaO19.8346|CaO19.727|IFV1	Predicted ORF in Assemblies 19, 20 and 21; member of a family encoded by FGR6-related genes in the RB2 repeat sequence; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1354098	1354318	-	ntar_1305	1354098	1354318	1	1354318	1354098					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1360231	1360768	+	ntar_1306	1360231	1360768	1	1360231	1360768	1360231	1360446			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1363315	1363841	-	ntar_1307	1363315	1363841	1	1363841	1363315	1363509	1363372			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1364313	1366109	+	orf19.726	1364313	1366109	1	1364313	1366109	1364440	1365888	PPZ1	orf19.8345|IPF26577.1|IPF13615.1|Contig4-2831_0012|orf6.6017|CA3683|CaO19.8345|CaO19.726	Putative protein phosphatase of the Type 1 family (serine/threonine-specific), similar to <i>S. cerevisiae</i> Ppz1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1366258	1368106	+	orf19.725	1366258	1368106	1	1366258	1368106	1366381	1367172		orf19.8344|IPF26583.1|IPF13613.1|Contig4-2831_0013|orf6.6018|CA3684|CaO19.725|CaO19.8344|IPF13613	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1368041	1371378	-	orf19.723	1368041	1371378	1	1371378	1368041	1370532	1368310	BCR1	orf19.8342|USV1|IPF19541.2|IPF19540.1|Contig4-2831_0018|orf6.6|orf6.6020|CA3685|CaO19.723|IPF19540	Transcription factor required for wild-type biofilm formation; not required for hyphal growth; regulates cell-surface-associated genes; has C2H2 zinc finger; filament induced; Tup1p-, Tec1p-, Mnl1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1378087	1380373	+	orf19.721	1378087	1380373	1	1378087	1380373	1378138	1380198		orf19.8340|IPF12829.2|IPF29720.1|Contig4-1601_0001|orf6.1093|CA0304|CaO19.8340|GRC3|CaO19.721|IPF12829	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1380803	1381450	+	orf19.720	1380803	1381450	1	1380803	1381450	1380803	1381450	GST3	orf19.8339|IPF17507.2|IPF19366.2|Contig4-1601_0003|orf6.1092|orf6.271|CA0303|CaO19.720|IPF17507	Expression is regulated upon white-opaque switching; upregulated in the presence of human neutrophils; peroxide-induced; induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	1381801	1384163	+	orf19.719	1381801	1384163	1	1381801	1384163	1381953	1383854		orf19.8338|IPF14027.3|IPF17505.2|Contig4-2196_0004|orf6.2640|orf6.272|CA0043|CaO19.719|HRD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1383830	1386120	-	orf19.718	1383830	1386120	1	1386120	1383830	1386011	1383936	RRN11	orf19.8337|IPF14026.2|IPF29721.1|Contig4-2196_0001|orf6.2639|orf6.273|CA1240|CaO19.718|IPF14026	Putative RNA polymerase I subunit [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1386259	1388210	-	orf19.717	1386259	1388210	1	1388210	1386259	1388174	1386474	HSP60	orf19.8336|orf6.2638|IPF26576.1|IPF14025.2|Contig4-2196_0002|CA1239|CaO19.8336|CaO19.717	Protein described as mitochondrial heat shock protein; soluble protein in hyphae; transcription is regulated by Nrg1p; transcriptionally regulated by iron; expression greater in high iron; heavy metal (cadmium) stress-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1388754	1389818	-	orf19.716	1388754	1389818	1	1389818	1388754	1389695	1389195		orf19.8335|IPF15781.2|IPF29722.1|Contig4-2069_0010|orf6.2637|CA1238|CaO19.716|CaO19.8335|IPF15781	Predicted ORF in Assemblies 19, 20 and 21; regulated by Nrg1p, Tup1p; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1390531	1391328	+	orf19.715	1390531	1391328	1	1390531	1391328	1390665	1391147		orf19.8334|IPF15784.1|IPF13386.1|Contig4-2069_0007|orf6.2636|orf6.409|CA1237|CaO19.715|IPF15784	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1391056	1392389	-	orf19.714	1391056	1392389	1	1392389	1391056	1391937	1391278		orf19.8333|IPF15785.2|IPF13387.1|Contig4-1948_0007|Contig4-2069_0006|orf6.2635|orf6.408|CA1236|YPT6|CaO19.714	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1392588	1393219	+	orf19.713	1392588	1393219	1	1392588	1393219	1392686	1393102		orf19.8332|IPF20079.1|IPF20037.1|Contig4-1948_0005|Contig4-2069_0002|orf6.2634|orf6.407|CA1235|CaO19.713|IPF20079	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1393341	1396336	+	orf19.712	1393341	1396336	1	1393341	1396336	1393368	1396103	KIP1	orf19.8331|IPF13390.2|IPF29716.1|Contig4-1948_0002|Contig4-1948_0004|orf6.2633|CA6177|CaO19.712	Non-essential kinesin from the bipolar (Kinesis-5) family; involved in formation of the mitotic spindle [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1396638	1397148	-	ntar_1308	1396638	1397148	1	1397148	1396638	1397067	1396726			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1399918	1401161	-	orf19.916	1399918	1401161	1	1401161	1399918	1400912	1400136		IPF19231.1|orf6.569|CA0117|CaO19.916|IPF19231	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1401527	1404571	-	orf19.915	1401527	1404571	1	1404571	1401527	1404115	1401527		IPF17975.2|orf6.568|CA0116|CaO19.915|IPF17975	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=H scenario_last_exon=H]
Ca21chrR	1404993	1405217	-	ntar_1309	1404993	1405217	1	1405217	1404993					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1406210	1406908	+	orf19.693	1406210	1406908	1	1406210	1406908	1406210	1406908		IPF18511.2|IPF16201.2|Contig4-1704_0003|orf6.4014|orf6.456|CA0085|CaO19.693|IPF16201	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1408712	1410459	-	orf19.695	1408712	1410459	1	1410459	1408712	1410390	1409092	RGS2	orf19.8314|IPF18512|IPF26603.1|IPF18512.1|orf6.4013|CA2209|CaO19.8314|CaO19.695	Protein of RGS superfamily; not essential for viability; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1411399	1411703	-	ntar_1310	1411399	1411703	1	1411703	1411399					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1414480	1414718	+	ntar_1311	1414480	1414718	1	1414480	1414718					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1414985	1415300	-	ntar_1312	1414985	1415300	1	1415300	1414985					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1415420	1416795	-	ntar_1313	1415420	1416795	1	1416795	1415420	1415797	1415645			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1415744	1415961	+	ntar_1314	1415744	1415961	1	1415744	1415961					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1417414	1417984	+	ntar_1315	1417414	1417984	1	1417414	1417984					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1418537	1420156	+	orf19.696	1418537	1420156	1	1418537	1420156	1418717	1420129	STE2	orf19.8315|orf6.4012|orf 6.4012|IPF26602.1|IPF17255.2|CA2208|CaO19.8315|CaO19.696|IPF17255	Receptor for alpha factor mating pheromone, MFalpha; required for a-type cells to respond to alpha factor, for opaque a-form mating and white a-form response; possible Kex2p substrate; a-specific, alpha-factor induced, A1-Alpha2p repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1420209	1420469	-	ntar_1316	1420209	1420469	1	1420469	1420209					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1420422	1421886	+	orf19.697	1420422	1421886	1	1420422	1421886	1420445	1421791		orf19.8316|IPF12169.2|IPF29734.1|Contig4-1763_0006|orf6.4011|CA2207|CaO19.697|IPF12169	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1421078	1421277	-	ntar_1317	1421078	1421277	1	1421277	1421078					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1422007	1424679	+	ntar_1318	1422007	1424679	1	1422007	1424679	1422352	1422561			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1424680	1426481	-	orf19.698	1424680	1426481	1	1426481	1424680	1426316	1424832		orf19.8317|IPF26601.1|IPF12173.2|Contig4-2015_0006|orf6.4010|CA2206|CaO19.698|CaO19.8317|IPF12173	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1426735	1427295	+	ntar_1319	1426735	1427295	1	1426735	1427295					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1426764	1427344	-	orf19.699	1426764	1427344	1	1427344	1426764	1427203	1426826		orf19.8318|IPF26611.1|IPF17671.2|Contig4-2015_0004|orf6.4009|CaO19.8318|CaO19.699	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1428983	1429194	+	ntar_1320	1428983	1429194	1	1428983	1429194					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1429358	1431299	+	orf19.700	1429358	1431299	1	1429358	1431299	1429476	1431299	SEO1	orf19.8319|orf6.3324|IPF12176.1|IPF29733.1|SEO2|Contig4-3021_0009|orf6.4008|CA2205	Protein with similarity to permeases; transcription is negatively regulated by Sfu1p; flucytosine induced; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chrR	1431816	1432259	-	ntar_1321	1431816	1432259	1	1432259	1431816	1432195	1431950			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1433938	1436157	+	orf19.701	1433938	1436157	1	1433938	1436157	1433938	1436157	CFL11	orf19.8320|IPF26596.1|IPF7992.1|FRE8|CFL96|CFL9|Contig4-2984_0006|orf6.3325|CA1701|CaO19.8320|CaO19.701	Predicted ORF in Assemblies 19, 20 and 21; similar to ferric reductase Fre10p; flucytosine repressed; possibly adherence-induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1436235	1439702	-	orf19.702	1436235	1439702	1	1439702	1436235	1439673	1436356		orf19.8321|IPF26613.1|IPF7990.1|Contig4-2984_0007|orf6.3326|CA1702|CaO19.702|ECM32|CaO19.8321|HEL1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1439767	1440402	+	ntar_1322	1439767	1440402	1	1439767	1440402	1440124	1440360			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1439828	1440773	-	orf19.703	1439828	1440773	2	1440773|1440625	1440697|1439828	1440700	1439889		orf19.8322|IPF26608.1|IPF7987.1|Contig4-2984_0009|orf6.3327|CA1703|CaO19.703|CPD1|CaO19.8322|IPF7987	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1440899	1441779	-	orf19.704	1440899	1441779	1	1441779	1440899	1441728	1440949	SOL3	orf19.8323|IPF26605.1|IPF19927.1|Contig4-2984_0011|orf6.3328|CA1704|CaO19.8323|CaO19.704	Predicted ORF in Assemblies 19, 20 and 21; macrophage-downregulated protein abundance; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1441975	1443403	-	orf19.705	1441975	1443403	1	1443403	1441975	1443358	1442009	GCN5	orf19.8324|IPF26604.1|IPF7983.2|Contig4-2984_0012|orf6.3329|CA1705|CaO19.8324|CaO19.705	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorouracil (5-FU) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1443574	1445255	+	orf19.706	1443574	1445255	1	1443574	1445255	1443627	1445189	NMD3	orf19.8325|IPF12208.2|IPF7981.1|Contig4-2984_0015|orf6.1726|orf6.3330|CA1706|CaO19.706	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1445405	1447436	+	orf19.707	1445405	1447436	1	1445405	1447436	1445476	1447395	APG7	orf19.8326|IPF12207.1|IPF29732.1|Contig4-2984_0019|orf6.1727|CA0661|ATG7|CaO19.707	Protein not essential for viability; similar to S. cerevisiae Atg7p, which is an E1 protein conjugation enzyme involved in protein-vacuolar targeting and autophagy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1447583	1450209	+	orf19.708	1447583	1450209	1	1447583	1450209	1447594	1450209		orf19.8327|IPF26595.1|IPF12206.1|Contig4-2984_0022|orf6.1728|CA0662|SPC97|CaO19.708|CaO19.8327	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1450253	1451168	-	orf19.709	1450253	1451168	1	1451168	1450253	1451118	1450351	PUP2	orf19.8328|IPF26606.1|IPF12205.1|Contig4-2984_0023|Contig4-2984_0024|orf6.1729|CA0663|CaO19.709|CaO19.8328	Alpha5 subunit of the 20S proteasome; macrophage/pseudohyphal-repressed; regulated by Gcn2p and Gcn4p; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1451325	1453153	-	orf19.1860	1451325	1453153	2	1453153|1452663	1453055|1451325	1453087	1451449	LSC2	orf19.9416|orf19.8329|orf6.1730|IPF25466.1|IPF25436.1|IPF4686.3|IPF19007.1|IPF26609.1|IPF12204.2|Contig4-2797_0017|Contig4-2984_0026|orf6.2420|CA6196|CA0664|orf19.710|IPF19007.3eoc	Protein described as beta subunit of succinate-CoA ligase; transcription regulated by Mig1p and Tup1p; transcriptionally regulated by iron; expression greater in high iron; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1453663	1454909	-	orf19.1857	1453663	1454909	1	1454909	1453663	1454635	1453958		orf19.9415|IPF4684|IPF25474.1|IPF4684.1|Contig4-3021_0004|orf6.5624|CA3375|CaO19.9415|SPT1|CaO19.1857	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1453811	1454042	+	ntar_1323	1453811	1454042	1	1453811	1454042					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1455035	1455288	-	ntar_1324	1455035	1455288	1	1455288	1455035					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1455506	1456825	+	orf19.1856	1455506	1456825	2	1455506|1455698	1455604|1456825	1455568	1456683		orf19.9414|IPF25473.1|IPF4683.2|Contig4-3021_0006|orf6.5623|CA3374|IPF4683	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1456400	1456727	-	ntar_1325	1456400	1456727	1	1456727	1456400					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1457179	1457411	+	ntar_1326	1457179	1457411	1	1457179	1457411					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1457457	1459271	-	orf19.1855	1457457	1459271	1	1459271	1457457	1459271	1457457		orf19.9413|orf6.3324|IPF25469.1|IPF19985.1|SEO2|SEO1|Contig4-3021_0009|Contig4-3021_0010|orf6.4008|orf6.5622|CA3373|CaO19.1855|SEO11|CaO19.9413	Predicted membrane transporter, member of the anion:cation symporter (ACS) family, major facilitator superfamily (MFS); Gcn4p-regulated; flucytosine induced; ketoconazole-repressed; oxidative stress-induced via Cap1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	1459044	1459371	+	ntar_1327	1459044	1459371	1	1459044	1459371	1459162	1459371			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1460815	1461605	-	orf19.1854	1460815	1461605	1	1461605	1460815	1461352	1461035	HHF22	orf19.9412|IPF25481.1|IPF4677.1|HHF2|orf6.5621|CA3372|CaO19.1854|CaO19.9412	Putative histone H4; regulated by Efg1p; flucytosine, fluconazole-induced; amphotericin B, caspofungin repressed; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1462114	1462865	+	orf19.1853	1462114	1462865	1	1462114	1462865	1462310	1462720	HHT2	orf19.9411|IPF25478.1|IPF4676.1|Contig4-3021_0017|CA3371|CaO19.9411|CaO19.1853|HHT22	Protein described as histone H3; farnesol regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1462867	1463674	+	orf19.1852	1462867	1463674	1	1462867	1463674	1462928	1463452		orf19.9410|IPF25475.1|IPF4674.2|Contig4-3021_0019|Contig4-3021_0020|orf6.5619|CA3370|CaO19.1852|CaO19.9410|IPF4674	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1463484	1464758	-	orf19.1850	1463484	1464758	1	1464758	1463484	1464400	1463555	SIW14	orf19.9408|IPF25472.1|IPF4672.1|Contig4-3021_0022|orf6.5617|CA3369|CaO19.9408|CaO19.1850|IPF4672	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to S. cerevisiae Siw14p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1464866	1467165	+	orf19.1849	1464866	1467165	1	1464866	1467165	1464965	1467118		orf19.9407|IPF25468.1|IPF4671.2|Contig4-3021_0024|Contig4-3021_0025|orf6.5616|CA3368|CaO19.1849|CaO19.9407|IPF4671	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1466791	1467527	-	orf19.1848.1	1466791	1467527	2	1467527|1467400	1467470|1466791	1467472	1467188		IPF25467.1|IPF4669.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1467667	1469569	-	orf19.1847	1467667	1469569	1	1469569	1467667	1469568	1467679	ARO10	orf19.9405|IPF4667.1|IPF29286.1|Contig4-3021_0028|orf6.5614|CA3367|CaO19.1847|CaO19.9405|IPF4667	Aromatic decarboxylase of the Ehrlich fusel oil pathway of aromatic alcohol biosynthesis; pH-regulated (alkaline downregulated); protein abundance is affected by URA3 expression in the CAI-4 strain background [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1467717	1469002	+	ntar_1328	1467717	1469002	1	1467717	1469002	1468505	1468981			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1470656	1472911	-	orf19.1844	1470656	1472911	1	1472911	1470656	1472911	1470656		orf19.9403|IPF4664.2|IPF29287.1|IPF19399.2|FRE4|CFL91|FRE43|Contig4-3021_0032|orf6.184|orf6.5612|CA6264|CA3366|orf19.1845|FRE43.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; similar to ferric reductase Fre10p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1474122	1474203	-	ts(aga)2	1474122	1474203	1	1474203	1474122				tS(AGA)2.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1474702	1475590	+	ntar_1329	1474702	1475590	1	1474702	1475590					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1475415	1477426	-	orf19.1843	1475415	1477426	1	1477426	1475415	1477277	1475586	ALG6	orf19.9402|IPF25471.1|IPF4661.2|Contig4-3021_0036|Contig4-3021_0037|orf6.5611|CA3365|CaO19.1843|CaO19.9402	Putative glucosyltransferase involved in cell wall mannan biosynthesis; transcription is elevated in chk1, nik1, and sln1 homozygous null mutants; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1479356	1484522	+	orf19.1842	1479356	1484522	1	1479356	1484522	1479657	1484333		orf19.9401|CDC25|IPF18345.2|IPF16030.2|Contig4-2086_0003|orf6.1252|orf6.5609|orf6.5610|CA0382|CaO19.1842|IPF16030	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1484586	1485915	+	orf19.1841	1484586	1485915	1	1484586	1485915	1484684	1485808		orf19.9399|IPF17745.2|IPF16028.2|Contig4-2086_0001|orf6.119|orf6.1253|CA0383|CaO19.1841|IPF16028	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1486068	1487230	+	orf19.178	1486068	1487230	1	1486068	1487230	1486178	1487143		IPF17945.1|orf6.120|orf6.160|CA0025|CaO19.178|IPF17945	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1486882	1487295	-	ntar_1330	1486882	1487295	1	1487295	1486882	1487295	1487083			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1487316	1489418	+	orf19.2370	1487316	1489418	1	1487316	1489418	1487334	1489376	DSL1	orf19.9906|IPF19559.1|IPF24944.1|IPF19558.1|orf6.161|orf6.4768|CA2751|orf19.179|CaO19.2370|CaO19.9906|IPF19558	Protein similar to S. cerevisiae Dsl1p, which is a member of the t-SNARE complex of the endoplasmic reticulum [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1489395	1489933	-	orf19.2369.1	1489395	1489933	1	1489933	1489395	1489772	1489548	ATX1	IPF24942.1|IPF11464.1|Contig4-2581_0001|CA2750	ORF Predicted by Annotation Working Group; flucytosine induced; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1490195	1491931	+	orf19.2369	1490195	1491931	1	1490195	1491931	1490389	1491879		orf19.9905|IPF24946.1|IPF11465.2|Contig4-2581_0002|orf6.4767|CA2749|CaO19.9905|ORC5|CaO19.2369|IPF11465	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1491394	1493202	-	orf19.2368	1491394	1493202	1	1493202	1491394	1493143	1491899		orf19.9904|IPF18502.2|IPF11466.2|Contig4-2581_0003|orf6.4766|CA2748|LIN1|CaO19.2368|IPF11466	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1493293	1494517	+	orf19.2367	1493293	1494517	1	1493293	1494517	1493326	1493772		orf19.9903|IPF18501.2|IPF11467.2|Contig4-2581_0004|orf6.4073|orf6.4765|CA2747|CaO19.2367|IPF11467	Protein of unknown function; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1496790	1499387	+	orf19.2366	1496790	1499387	1	1496790	1499387	1496790	1499387		orf19.9902|IPF11469.2|IPF29125.1|Contig4-2581_0007|orf6.4074|CA2248|CaO19.2366|CaO19.9902|IPF11469	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1499474	1506338	-	orf19.2365	1499474	1506338	1	1506338	1499474	1506184	1499549	POL2	orf19.9901|IPF24950.1|IPF14265.2|Contig4-2581_0008|orf6.4075|CA2249|CaO19.9901|CaO19.2365	Protein described as DNA polymerase epsilon; transcriptionally induced by interaction with macrophage; transcription is regulated by Tup1p; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1507121	1510282	+	orf19.2364	1507121	1510282	1	1507121	1510282	1507154	1509994	MIS11	orf19.9900|IPF24960.1|IPF12851.2|Contig4-2886_0001|Contig4-2886_0002|orf6.4076|CA2250|CaO19.2364|ADE3|CaO19.9900	Similar to precursor of mitochondrial C1-tetrahydrofolate synthase; putative protein of glycine catabolism; downregulated by Efg1p; fluconazole-induced; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1510473	1511444	+	orf19.2363	1510473	1511444	1	1510473	1511444	1510636	1511181		orf19.9899|IPF24951.1|IPF12845.2|Contig4-2886_0003|orf6.4077|CA2251|FMP31|CaO19.9899|CaO19.2363|IPF12845	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1511297	1512446	-	orf19.2362	1511297	1512446	1	1512446	1511297	1512321	1511476		orf19.9898|IPF12844.2|IPF29130.1|Contig4-2886_0004|orf6.4078|CA2252|CaO19.9898|CaO19.2362|IPF12844	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1512678	1514340	+	orf19.2361	1512678	1514340	1	1512678	1514340	1512731	1514140	SPT10	orf19.9897|IPF24947.1|IPF16032.3|Contig4-2886_0006|orf6.4079|orf6.609|CA0132|CaO19.2361|IPF16032.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1514190	1521964	-	orf19.2360	1514190	1521964	2	1521964|1521323	1521866|1514190	1521155	1514505	URA2	orf19.9896|IPF10801.3|IPF29131.1|Contig4-2886_0007|Contig4-2886_0008|orf6.2755|orf6.610|CA1315|CaO19.2360|URA2.5eoc|IPF10801.2	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; macrophage/pseudohyphal-induced; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1523629	1525662	-	orf19.2356	1523629	1525662	1	1525662	1523629	1525254	1523701	CRZ2	orf19.9892|IPF24945.1|IPF10795.2|Contig4-2886_0011|orf6.1328|orf6.2759|CA0424|CaO19.2356|IPF10795	Putative transcription factor; zinc finger; similar to S. cerevisiae Crz1p; homozygous crz1, not crz2, null mutation suppresses fluconazole resistance of homozygous cka2 null (defective in CK2 kinase ); Rim101p-downregulated at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1529433	1530051	+	ntar_1331	1529433	1530051	1	1529433	1530051					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1532299	1535813	-	orf19.1816	1532299	1535813	1	1535813	1532299	1535813	1532346	ALS3	orf19.9891|orf19.9379|ALS8|IPF25511.1|IPF12561.3|IPF24952.1|IPF12997.2|orf6.2760|ALS2|ALS3-1|CA0591|CA0448|orf19.2355|ALS10|ALS3.5eoc|orf6.1614|IPF12561.2	Adhesin; ALS family; role in epithelial adhesion, endothelial invasiveness; allelic variation in adhesiveness; immunoprotective in mice; predicted GPI-anchor cell wall protein; macrophage, hyphal induced, pH, Nrg1p, Rfg1p, Tup1p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1536072	1536789	-	ntar_1332	1536072	1536789	1	1536789	1536072	1536334	1536212			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1537016	1537181	+	ntar_1333	1537016	1537181	1	1537016	1537181					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1538626	1539607	+	orf19.1815	1538626	1539607	1	1538626	1539607	1538777	1539514		orf19.9378|IPF12555.2|IPF29299.1|Contig4-2343_0002|orf6.1128|orf6.1615|CA0323|TIF6|CaO19.1815|CDC95	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1540006	1546056	+	orf19.1814	1540006	1546056	1	1540006	1546056	1540104	1545887		orf19.9377|IPF14337.3|IPF29300.1|orf6.1129|orf6.1175|orf6.1616|CA0324|STT4|CaO19.1814|IPF14337.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1547572	1550633	+	orf19.1813	1547572	1550633	1	1547572	1550633	1547993	1550428	FLC2	orf19.9376|IPF25512.1|IPF19026.1|Contig4-3058_0030|orf6.539|orf6.1174|orf6.540|CA0349|orf19.784|orf19.785|CaO19.9376|CFP1|CaO19.1813|IPF19026	Protein involved in heme uptake; putative FAD transporter, similar to S. cerevisiae Flc2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1550663	1552991	-	orf19.8	1550663	1552991	1	1552991	1550663	1552991	1550784		orf19.7681|IPF11570.2|IPF29984.1|orf6.506|CA0099|CaO19.8|IPF11570.5eoc	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1553211	1554560	-	orf19.9	1553211	1554560	1	1554560	1553211	1554425	1553265		orf19.7682|IPF11569.2|IPF18915.2|Contig4-1666_0002|orf6.1707|orf6.507|CA0100|CaO19.9|IPF11569	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1555143	1556768	-	orf19.10	1555143	1556768	1	1556768	1555143	1556768	1555221	ALK8	orf19.7683|IPF27231.1|IPF11568.1|Contig4-2506_0001|orf6.1706|CA0651|CaO19.7683|CaO19.10	Alkane-inducible cytochrome P450; catalyzes hydroxylation of lauric acid to hydroxylauric acid; overproduction causes fluconazole resistance in a wild-type background and causes multidrug resistance in a cdr1 cdr2 double mutant background [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1555249	1555467	+	ntar_1334	1555249	1555467	1	1555249	1555467					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1557553	1558272	-	orf19.11	1557553	1558272	1	1558272	1557553	1558272	1557553		orf19.7684|orf6.1705|IPF27233.1|IPF11566.1|Contig4-2506_0003|CA0650|CaO19.11|CaO19.7684|IPF11566	Gene transcription regulated by Mig1p and Tup1p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1559103	1560598	+	orf19.734	1559103	1560598	1	1559103	1560598	1559103	1560521	GLK1	orf19.7686|orf19.8353|IPF27232.1|IPF11564.1|IPF26579.1|IPF16544.2|Contig4-1499_0002|Contig4-2506_0004|orf6.1703|orf6.6009|CA0263|orf19.13|CaO19.734|CaO19.8353	Putative glucokinase; transcription is regulated upon yeast-hyphal switch; transcriptionally regulated by Efg1p; fluconazole-induced; induced in core stress response; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1560607	1561994	-	orf19.733	1560607	1561994	1	1561994	1560607	1561994	1560654		orf19.8352|IPF26581.1|IPF20141.1|Contig4-2506_0007|orf6.6010|ZSP12|CaO19.8352|CaO19.733	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1563061	1564244	+	orf19.732	1563061	1564244	1	1563061	1564244	1563333	1564181		orf19.8351|IPF26584.1|IPF8391.2|Contig4-2668_0006|orf6.6011|CA3677|SOU3|CaO19.732|CaO19.8351	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1564459	1565987	+	orf19.731	1564459	1565987	1	1564459	1565987	1564484	1565881	EMP46	orf19.8350|IPF26580.1|IPF8392.1|Contig4-2668_0003|orf6.6012|CA3678|CaO19.731|CaO19.8350|IPF8392	Protein similar to <i>S. cerevisiae</i> Emp46p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1566291	1568930	+	orf19.730	1566291	1568930	1	1566291	1568930	1566291	1568930		IPF20142.1|orf6.6013|CA3679|IPF20142	Predicted ORF in Assembly 20 and 21 (see Locus History); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	1569226	1570971	+	orf19.6152	1569226	1570971	1	1569226	1570971	1569226	1570809		orf19.13571|IPF9406.2|IPF27802.1|Contig4-2953_0017|orf6.5662|CA3407|CaO19.6152|IPF9406	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1571012	1571815	+	orf19.6151	1571012	1571815	1	1571012	1571815	1571076	1571552	ARC15	orf19.13570|IPF20992.1|IPF9407.2|Contig4-2953_0015|orf6.5663|CA3408|CaO19.6151|CaO19.13570|IPF9407	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1571679	1574889	-	orf19.6148	1571679	1574889	1	1574889	1571679	1574889	1571767		orf19.13567|IPF21005.1|IPF9410.2|Contig4-2953_0014|orf6.5666|CA3409|CaO19.6148|CaO19.13567|IPF9410	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1573880	1574160	+	ntar_1335	1573880	1574160	1	1573880	1574160	1574023	1574160			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1576180	1576839	+	orf19.6147	1576180	1576839	1	1576180	1576839	1576213	1576782		orf19.13566|IPF20993.1|IPF9411.2|Contig4-2953_0011|orf6.5667|CA3410|CaO19.6147|CaO19.13566|IPF9411	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1576765	1577873	-	orf19.6146	1576765	1577873	1	1577873	1576765	1577798	1577043	CLG1	orf19.13565|IPF9413.1|IPF27804.1|Contig4-2953_0010|orf6.5668|CA3411|CaO19.6146|CaO19.13565|IPF9413	Transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1579271	1581760	-	orf19.6143	1579271	1581760	1	1581760	1579271	1581537	1579423		orf19.13562|IPF9238.1|IPF27800.1|Contig4-2953_0005|orf6.5671|CA3412|FAO1|CaO19.6143|IPF9238	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1582097	1582702	-	orf19.6142	1582097	1582702	1	1582702	1582097	1582702	1582097		orf19.13561|IPF20989.1|IPF9239.2|Contig4-2953_0004|orf6.5672|CA3413|CaO19.6142|CaO19.13561|IPF9239	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1582821	1584693	-	orf19.6141	1582821	1584693	1	1584693	1582821	1584628	1582931	HGT16	orf19.13560|IPF20980.1|IPF9240.2|Contig4-2953_0003|orf6.5673|CA3414|QUP2|CaO19.13560|CaO19.6141|IPF9240	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; gene has intron; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1585765	1587170	+	orf19.6140	1585765	1587170	1	1585765	1587170	1586310	1587170	FRE30	orf19.13559|FRE30.53|orf6.5674|CA3415|FRE30.53f|IPF17765.2	Protein with similarity to ferric reductases; downregulated in response to amphotericin B, estradiol, or ciclopirox olamine, and upregulated by interaction with macrophage; un-merged from orf19.6139 in a revision of Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1587188	1588693	+	orf19.6139	1587188	1588693	1	1587188	1588693	1587228	1588439	FRE7	orf19.13558|IPF20984.1|IPF17763.2|FRE3|CFL1|CFL93|orf6.5675|CA3416|FRE30.3|FRE30.3f	Protein similar to ferric reductase Fre10p; transcription is downregulated in response to treatment with ciclopirox olamine or 17-beta-estradiol; transcriptionally induced by alkaline conditions or interaction with macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1589637	1591890	+	orf19.6138	1589637	1591890	1	1589637	1591890	1589637	1591829		orf19.13557|IPF20976.1|IPF12773.2|CFL93|FRE6|FRE41|Contig4-2158_0004|orf6.5676|CA3417|CFL6|CaO19.6138|CaO19.13557	Predicted ORF in Assemblies 19, 20 and 21; similar to ferric reductase Fre10p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1592090	1594197	+	orf19.6137	1592090	1594197	1	1592090	1594197	1592214	1594109		orf19.13556|IPF20978.1|IPF12777.2|Contig4-2201_0002|orf6.5677|CA3418|CaO19.6137|CaO19.13556|IPF12777	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1594061	1595179	-	orf19.6136	1594061	1595179	1	1595179	1594061	1595113	1594184		orf19.13555|IPF20986.1|IPF12778.1|Contig4-2201_0003|orf6.5678|CA3419|CaO19.6136|MRPL4|CaO19.13555|IPF12778	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1595306	1595948	+	orf19.6135.1	1595306	1595948	1	1595306	1595948	1595398	1595688	SMX4	IPF21007.1|IPF12779.1|Contig4-2201_0004|CA3420	ORF Predicted by Annotation Working Group; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1595625	1596893	-	orf19.6135	1595625	1596893	1	1596893	1595625	1596830	1595757		orf19.13554|IPF19782.1|IPF27803.1|Contig4-2201_0005|orf6.5679|CA3421|CaO19.6135|TID3|CaO19.13554|IPF19782	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1597409	1599878	+	orf19.6134	1597409	1599878	1	1597409	1599878	1597414	1599867		orf19.13553|IPF17289.2|IPF27798.1|Contig4-2334_0004|Contig4-2334_0007|orf6.5680|CA3422|CaO19.6134|IPF17289	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1600077	1603008	+	orf19.6133	1600077	1603008	1	1600077	1603008	1600261	1602981	PIF1	orf19.13552|IPF19672.2|IPF19673.2|Contig4-2334_0002|orf6.5114|orf6.5681|CA3002|CaO19.6133|IPF19673.1	Decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1603269	1603890	+	orf19.6132	1603269	1603890	1	1603269	1603890	1603361	1603744		orf19.13551|IPF21000.1|IPF8841.2|Contig4-2334_0001|orf6.5113|CA3001|CaO19.13551|CaO19.6132|IPF8841	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1603758	1604799	-	orf19.6131	1603758	1604799	1	1604799	1603758	1604756	1603824	KSR1	orf19.13550|IPF20987.1|IPF8842.2|Contig4-2655_0002|orf6.5112|CA3000|TSC10|CaO19.6131|CaO19.13550|TSC1.5	3-ketosphinganine reductase, catalyzes the second step in phytosphingosine synthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1604873	1605761	-	orf19.6129	1604873	1605761	1	1605761	1604873	1605725	1604958	MRPL8	orf19.13548|IPF20988.1|IPF8844.2|Contig4-2655_0003|orf6.5110|CA2999|CaO19.6129|CaO19.13548	Predicted ribosomal protein of the mitochondrial 60S subunit [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1605916	1607694	-	orf19.6127	1605916	1607694	1	1607694	1605916	1607579	1606104	LPD1	orf19.13546|IPF20981.1|IPF8847.2|Contig4-2655_0004|orf6.5108|CA2998|CaO19.6127|CaO19.13546	Putative dihydrolipoamide dehydrogenase; soluble protein in hyphae; antigenic during human oral infection and murine systemic infection; macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1608048	1608122	-	tk(uuu)2	1608048	1608122	1	1608122	1608048				tK(UUU)2.2	tRNA-Lys predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1609082	1610868	+	orf19.6126	1609082	1610868	1	1609082	1610868	1609238	1610563	KGD2	orf19.13545|orf6.5107|IPF20983.1|IPF8851.2|Contig4-2655_0006|CA2997|CaO19.13545|CaO19.6126	Protein described as dihydrolipoamide S-succinyltransferase; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1611848	1614433	+	orf19.6124	1611848	1614433	1	1611848	1614433	1611848	1614199	ACE2	orf19.13543|IPF20973.1|IPF9108.2|Contig4-2916_0014|orf6.5105|CA2996|CaO19.6124|CaO19.13543|IPF9108	Putative transcription factor involved in regulation of morphogenesis; required for wild-type cell separation, adherence, biofilm formation, and virulence in mouse; mutant is hyperfilamentous; similar to S. cerevisiae Ace2p and Swi5p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1614264	1617443	-	orf19.6121	1614264	1617443	1	1617443	1614264	1617244	1614527	MNL1	orf19.13540|IPF20971.1|IPF9113.2|Contig4-2916_0013|orf6.5102|CA2995|MSN2|CaO19.13540|CaO19.6121|IPF9113	Transcription factor that activates transcription of stress response genes via SLE (STRE-like) elements, required for adaptation to weak acid stress; activates a subset of the genes that are repressed by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1617919	1618130	+	ntar_1336	1617919	1618130	1	1617919	1618130					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1618004	1620553	-	orf19.6119	1618004	1620553	1	1620553	1618004	1620230	1618215		orf19.13538|IPF20977.1|IPF9116.2|Contig4-2916_0011|orf6.5100|CA2994|CaO19.13538|CaO19.6119|IPF9116	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1620856	1621537	+	orf19.6118	1620856	1621537	1	1620856	1621537	1620979	1621431		orf19.13537|IPF20994.1|IPF9118.1|Contig4-2916_0008|orf6.5099|CA2993|CaO19.6118|CaO19.13537|IPF9118	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1622614	1623954	+	orf19.6117	1622614	1623954	1	1622614	1623954	1622614	1623954		orf19.13536|IPF20054.1|IPF20982.1|IPF20123.1|Contig4-2916_0006|orf6.1016|orf6.5098|CA0262|orf19.1407|CaO19.13536|ZSP11|CaO19.6117|IPF20054	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chrR	1624375	1625505	-	orf19.6116	1624375	1625505	1	1625505	1624375	1625505	1624375	GLK4	orf19.13535|IPF8388.2|IPF20985.1|IPF18395.1|Contig4-1499_0003|Contig4-2916_0003|orf6.1017|orf6.5097|orf19.1408|CaO19.13535|CaO19.6116	Protein described as a glucokinase; decreased expression in hyphae compared to yeast-form cells [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	1626335	1627021	+	orf19.2620	1626335	1627021	1	1626335	1627021	1626335	1627021		orf19.10151|IPF24715.1|IPF19693.1|orf6.1411|CaO19.2620|CaO19.10151	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1627336	1627936	+	orf19.2621	1627336	1627936	2	1627336|1627476	1627402|1627936	1627400	1627850		orf19.10152|IPF24717.1|IPF18977.1|orf6.1412|CA0469|IPF18977	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1627763	1628981	-	orf19.2622	1627763	1628981	1	1628981	1627763	1628715	1628047	YPT31	orf19.10153|IPF24714.1|IPF12928.2|orf6.1413|CA0470|CaO19.2622|CaO19.10153|YPT32	Predicted ORF in Assemblies 19, 20 and 21 (see Locus History Note for Assembly 19 correction); mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1629187	1632457	-	orf19.2623	1629187	1632457	1	1632457	1629187	1631995	1629413	ECM22	orf19.10154|IPF24711.1|IPF12926.2|Contig4-2829_0014|orf6.1414|CA0471|ZCF12|CaO19.10154|CaO19.2623	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1634741	1636564	-	orf19.2624	1634741	1636564	1	1636564	1634741	1636564	1634741		orf19.10155|IPF24712.1|IPF12767.2|Contig4-2829_0009|orf6.2650|CA1244|CaO19.10155|CaO19.2624|IPF12767	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1637901	1638206	-	orf19.2625	1637901	1638206	1	1638206	1637901	1638206	1637901		orf19.10156|IPF24719.1|IPF29046.1|Contig4-2829_0006|orf6.2649|CaO19.10156|CaO19.2625	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1639487	1642240	+	orf19.729.1	1639487	1642240	1	1639487	1642240	1639487	1642126	RGD3	orf19.8349|orf19.10157|IPF24710.1|IPF20080.1|IPF26570.1|IPF20142.1|Contig4-2668_0002|Contig4-2829_0004|orf6.2648|orf6.5661|orf6.6013|CA3679|orf19.2626|RGD2|CaO19.730|CaO19.8349	Putative Rho GTPase activating protein; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1642484	1643548	+	orf19.729	1642484	1643548	1	1642484	1643548	1642563	1643390		SHE3|orf19.8348|orf19.10158|IPF24713.1|IPF12772.1|IPF26582.1|IPF8395.2|orf6.6014|orf6.2647|CA3680|orf19.2627|SHE3-3|CaO19.8348|CaO19.729|IPF8395	Protein similar to S. cerevisiae She3p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1643396	1647386	-	orf19.728	1643396	1647386	1	1647386	1643396	1647308	1643445	TSC11	orf19.8347|IPF26588.1|IPF19787.1|orf6.6015|CA3681|CaO19.728|IPF19787	Protein similar to S. cerevisiae Tsc11p which is involved in sphingolipid biosynthesis; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	1649673	1650496	+	orf19.6293	1649673	1650496	1	1649673	1650496	1649799	1650401		orf19.13672|IPF20862.1|IPF9318.1|Contig4-1932_0001|orf6.5443|CA3230|EMP24|CaO19.13672|CaO19.6293	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1650935	1654409	+	orf19.6291	1650935	1654409	1	1650935	1654409	1651031	1654324		orf19.13670|orf19.13671|IPF20865.1|IPF20843.1|IPF9320.1|IPF9324.1|Contig4-2283_0008|orf6.5441|orf6.5442|CA3229|orf19.6292|FUN30	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1654305	1654534	-	ntar_1337	1654305	1654534	1	1654534	1654305					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1654552	1655046	-	orf19.6288	1654552	1655046	1	1655046	1654552	1655046	1654552		orf19.13667|IPF20866.1|IPF9325.2|Contig4-2560_0001|orf6.5438|CA3228|CaO19.13667|CaO19.6288|IPF9325	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1655294	1656914	+	orf19.6287	1655294	1656914	1	1655294	1656914	1655397	1656647	AAT21	orf19.13666|IPF20853.1|IPF9326.2|Contig4-2560_0002|orf6.5437|CA3227|CaO19.6287|AAT2|CaO19.13666	Predicted ORF in Assemblies 19, 20 and 21; Gcn4p-regulated; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1656839	1658039	-	orf19.6286.2	1656839	1658039	2	1658039|1657494	1657925|1656839	1657927	1657249	RPS27	IPF9327.1|Contig4-2560_0004|CA3226|RPS27B	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1658357	1659738	-	orf19.6286	1658357	1659738	1	1659738	1658357	1659187	1658591		orf19.13665|IPF20863.1|IPF9329.1|Contig4-2560_0006|orf6.5436|CA3225|CaO19.6286|IPF9329	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1658360	1658500	+	ntar_1338	1658360	1658500	1	1658360	1658500					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1659419	1659811	+	ntar_1339	1659419	1659811	1	1659419	1659811	1659419	1659658			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1659841	1660513	-	ntar_1340	1659841	1660513	1	1660513	1659841					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1660711	1662859	+	orf19.6285	1660711	1662859	2	1660711|1660896	1660735|1662859	1660910	1661902	GLC7	orf19.13664|orf6.5435|IPF20854.1|IPF18366.1|CA3224|CaO19.6285|CaO19.13664	Protein described as serine/threonine phosphatase; transcriptionally regulated by iron; expression greater in high iron; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1662675	1663962	-	orf19.6284	1662675	1663962	1	1663962	1662675	1663894	1662977		orf19.13663|IPF18880.2|IPF20855.1|IPF17133.2|Contig4-1438_0001|orf6.1871|orf6.5434|CA3223|orf19.3484|SRP102|CaO19.13663|CaO19.6284	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1664125	1664987	+	orf19.6283	1664125	1664987	1	1664125	1664987	1664160	1664948		orf19.13662|IPF15883.2|IPF20857.1|IPF17135.1|Contig4-1438_0003|Contig4-2574_0001|orf6.1872|orf6.5433|CA3222|orf19.3485|NFU2|CaO19.6283|CaO19.13662|IPF15883	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1665020	1667565	-	orf19.6282	1665020	1667565	1	1667565	1665020	1667565	1665118		orf19.13661|IPF15880.2|IPF20858.1|IPF17137.2|Contig4-2574_0003|Contig4-2574_0004|Contig4-2574_0005|orf6.5432|orf6.1873|CA0754|orf19.3486|CaO19.6282|CaO19.13661	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1669566	1670703	+	orf19.3487	1669566	1670703	1	1669566	1670703	1669743	1670078		IPF14861.2|CA0755|CaO19.3487|IPF14861|orf6.1874	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1670548	1670968	-	ntar_1341	1670548	1670968	1	1670968	1670548					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1670965	1671222	-	ntar_1342	1670965	1671222	1	1671222	1670965	1671114	1670965			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1671057	1672508	+	orf19.1985	1671057	1672508	1	1671057	1672508	1671193	1672404		IPF19000.1|IPF14674.2|IPF14859.2|Contig4-2574_0011|orf6.1283|orf6.1875|orf6.1284|CA0756|orf19.1984|orf19.3488	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1671508	1671702	-	ntar_1343	1671508	1671702	1	1671702	1671508	1671702	1671565			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1671782	1672240	-	ntar_1344	1671782	1672240	1	1672240	1671782	1672240	1672040			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1672040	1672483	-	ntar_1345	1672040	1672483	1	1672483	1672040	1672240	1672040			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1672586	1674100	+	orf19.1986	1672586	1674100	1	1672586	1674100	1672586	1673827	ARO2	IPF14673.2|IPF14858.2|Contig4-2549_0012|orf6.1285|orf6.1876|CA0398|orf19.3489|ARO22|CaO19.1986	Putative chorismate synthase; fungal-specific (no human or murine homolog); protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1673865	1675832	-	orf19.1988	1673865	1675832	1	1675832	1673865	1675738	1673999	CDC45	IPF14671.2|IPF19695.1|Contig4-2549_0008|Contig4-2549_0010|Contig4-2549_0011|orf6.1287|orf6.1439|CA0399|orf19.2634|CaO19.1988	Protein described as a DNA replication initiation factor; transcriptionally regulated by interaction with macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1677282	1679224	+	orf19.2633	1677282	1679224	1	1677282	1679224	1677431	1679209	HGT14	IPF8610.1|Contig4-2549_0002|orf6.1438|CA0480|QUP1|CaO19.2633|IPF8610	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1678529	1679184	-	ntar_1346	1678529	1679184	1	1679184	1678529	1679184	1678936			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1679502	1680076	+	orf19.2633.1	1679502	1680076	1	1679502	1680076	1679746	1679940			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1679893	1681988	-	orf19.3704	1679893	1681988	1	1681988	1679893	1681888	1680068		orf19.11188|IPF18971.2|IPF23554.1|IPF8614.2|Contig4-1425_0002|orf6.2153|orf6.1437|CA0939|orf19.2632|CaO19.3704|DBP6|CaO19.11188	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1682054	1682628	+	orf19.3704.1	1682054	1682628	1	1682054	1682628	1682156	1682431		IPF23568.1|IPF8616.1|Contig4-1425_0003|Contig4-2552_0007|CA0940|IPF8616	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1682476	1684043	-	orf19.3705	1682476	1684043	1	1684043	1682476	1683895	1682492	PTC6	orf19.11189|IPF19973.2|IPF8617.1|Contig4-2552_0005|Contig4-2552_0006|orf6.2154|orf6.5302|CA0941|CaO19.3705|IPF8617	Putative protein phosphatase of the Type 2C-related family (serine/threonine-specific), similar to S. cerevisiae Ptc6p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1684582	1686707	+	orf19.3706	1684582	1686707	1	1684582	1686707	1684739	1686577		orf19.11191|IPF18381.1|IPF8619.2|Contig4-2552_0003|orf6.2155|orf6.5303|orf6.5304|CA0942|CaO19.3706|IPF8619	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1686318	1686448	-	ntar_1347	1686318	1686448	1	1686448	1686318					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1686909	1688403	-	orf19.3707	1686909	1688403	1	1688403	1686909	1688203	1687007	YHB1	orf19.11192|orf6.2156|IPF23556.1|IPF8621.2|Contig4-2552_0002|orf6.5305|CA0943|CaO19.3707	Nitric oxide dioxygenase, acts in nitric oxide scavenging/detoxification; role in virulence in mouse; transcription activated by NO, macrophage interaction; hyphal downregulated; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1691563	1692242	-	ntar_1348	1691563	1692242	1	1692242	1691563					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1692494	1693826	-	ntar_1349	1692494	1693826	1	1693826	1692494	1693560	1693363			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1692725	1693921	+	orf19.3708	1692725	1693921	1	1692725	1693921	1692725	1693921	SAP2	orf19.11193|PRA|CAP|PRA11|SAP2x|PEP|PEP11|IPF23558.1|IPF9220.2|Contig4-2800_0001|orf6.5306|CA3138|CaO19.3708|CaO19.11193	Major secreted aspartyl proteinase; roles in use of protein as nitrogen source, virulence in mouse, rat, guinea pig, human vaginal epithelium; immunoprotective; allele-specific function; regulated by growth, albumin, drugs, white cell-type [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1694089	1694443	-	ntar_1350	1694089	1694443	1	1694443	1694089					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1696893	1698294	+	orf19.3710	1696893	1698294	1	1696893	1698294	1696963	1698165	YHB5	orf19.11195|IPF23557.1|IPF9216.2|YHB3|Contig4-2800_0005|orf6.5308|CA3139|CaO19.11195|YHB2|CaO19.3710	Protein related to flavohemoglobins; not required for wild-type nitric oxide resistance; has predicted globin, FAD-binding, and NAD(P)-binding domains but lacks some conserved residues of flavohemoglobins; mRNA detected; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1700050	1702239	+	orf19.3711	1700050	1702239	1	1700050	1702239	1700050	1702239		orf19.11196|IPF23551.1|IPF9214.2|Contig4-2800_0007|orf6.5309|CA3140|CaO19.11196|PHH2|CaO19.3711|IPF9214	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1702585	1703464	-	orf19.3712	1702585	1703464	1	1703464	1702585	1703464	1703015		orf19.11197|IPF23561.1|IPF9213.2|Contig4-2800_0009|orf6.5310|CA3141|CaO19.11197|CaO19.3712|IPF9211.3f	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1703561	1704151	-	orf19.3713	1703561	1704151	1	1704151	1703561	1704151	1703561		orf19.11198|IPF23560.1|IPF9211.2|orf6.5311|CA3142|CaO19.3713|CaO19.11198|IPF9211.5f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1706751	1708832	+	orf19.3714	1706751	1708832	1	1706751	1708832	1706954	1708801		orf19.11199|IPF23552.1|IPF8295.2|Contig4-2908_0005|orf6.5312|CA3143|CaO19.3714|CaO19.11199|IPF8295	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1708861	1709828	-	orf19.3715	1708861	1709828	1	1709828	1708861	1709657	1708914	ASF1	orf19.11200|IPF23559.1|IPF8293.2|Contig4-2908_0006|orf6.5313|CA3144|CaO19.11200|CaO19.3715	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Asf1p, which is a chromatin assembly complex component [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1712520	1713611	+	orf19.612	1712520	1713611	1	1712520	1713611	1712520	1713512		orf19.8245|orf19.11201|IPF23564.1|IPF18378.1|IPF26713.1|IPF8287.2|Contig4-2908_0009|orf6.2976|orf6.5314|CA1457|orf19.3716|CaO19.8245|CaO19.612|IPF8287	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1713688	1713758	-	tg(gcc)1	1713688	1713758	1	1713758	1713688				tG(GCC)1.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1717779	1718282	-	ntar_1351	1717779	1718282	1	1718282	1717779					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1718960	1719206	-	ntar_1352	1718960	1719206	1	1719206	1718960					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1718975	1719571	+	ntar_1353	1718975	1719571	1	1718975	1719571					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1722450	1725631	+	orf19.610	1722450	1725631	1	1722450	1725631	1723589	1725166	EFG1	IPF3577.2|IPF3575.2|Contig4-2215_0003|orf6.2978|orf6.4821|CA2787|orf19.8243	Transcriptional repressor; required for white-phase cell type; hyphal growth, metabolism, cell-wall gene regulator; roles in adhesion, virulence; Cph1p and Efg1p have role in host cytokine response; bHLH; binds E-box; T206 phosphorylated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1725648	1725983	-	orf19.609	1725648	1725983	1	1725983	1725648	1725983	1725648		IPF29770.1|orf6.2979|CaO19.609	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; transcription is specific to white cell type [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1726017	1729478	-	orf19.607	1726017	1729478	1	1729478	1726017	1729384	1726217		orf19.8240|IPF3569.2|IPF29784.1|Contig4-2930_0001|orf6.2980|orf6.4824|CA2788|RAD26|CaO19.607	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1729633	1729913	-	ntar_1354	1729633	1729913	1	1729913	1729633					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1730957	1733423	+	orf19.606	1730957	1733423	1	1730957	1733423	1731302	1733218		orf19.8239|IPF26699.1|IPF3567.1|Contig4-2930_0007|orf6.4825|CA2789|CaO19.606|CaO19.8239|IPF3567	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1733930	1734244	-	orf19.605	1733930	1734244	1	1734244	1733930	1734244	1733930		orf19.8238|IPF26740.1|IPF3564.1|Contig4-2930_0009|orf6.4826|CaO19.605|CaO19.8238	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1734248	1735666	-	ntar_1355	1734248	1735666	1	1735666	1734248	1735635	1735237			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1734493	1736622	+	orf19.604	1734493	1736622	1	1734493	1736622	1734493	1736622		orf19.8237|IPF26694.1|IPF3562.2|Contig4-2930_0011|orf6.4827|CA2790|CaO19.8237|PHH1|CaO19.604|IPF3562	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1735834	1736562	-	ntar_1356	1735834	1736562	1	1736562	1735834					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1736970	1737978	+	orf19.603	1736970	1737978	1	1736970	1737978	1737038	1737889	IMP4	orf19.8236|IPF26716.1|IPF3560.2|Contig4-2930_0013|orf6.4828|CA2791|CaO19.603|CaO19.8236	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1737827	1741618	-	orf19.600	1737827	1741618	2	1741618|1741199	1741349|1737827	1741134	1737964	TRK1	orf19.8233|orf19.8235|IPF3557.2|IPF19076.2|Contig4-2930_0014|Contig4-2930_0017|orf6.4829|orf6.4831|orf6.993|CA2793|CA2792|orf19.602|TRK1.5f	Potassium transporter; mediates K+ and Cl- influx; role in sensitivity to cationic antimicrobial peptides, not via direct peptide uptake, but possibly related to membrane permeability; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1741699	1742709	+	ntar_1357	1741699	1742709	1	1741699	1742709	1742274	1742477			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1742933	1743292	-	orf19.599	1742933	1743292	1	1743292	1742933	1743292	1742933		orf19.8232|IPF26728.1|IPF3553.2|Contig4-2930_0019|orf6.4832|orf6.992|CaO19.599	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1748791	1749168	-	orf19.598	1748791	1749168	1	1749168	1748791	1749168	1748791		orf19.8230|IPF26736.1|IPF29777.1|Contig4-2132_0004|orf6.5682|CaO19.8230|CaO19.598	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1749581	1751563	-	orf19.597	1749581	1751563	1	1751563	1749581	1751403	1749721		orf19.8229|IPF26700.1|IPF3549.1|Contig4-2132_0002|orf6.5683|CA3423|AAT21|CaO19.597|IPF3549	Predicted ORF in Assemblies 19, 20 and 21; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1752009	1752798	+	orf19.596.2	1752009	1752798	2	1752009|1752265	1752179|1752798	1752120	1752438			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1752519	1753026	-	orf19.596.1	1752519	1753026	1	1753026	1752519	1753003	1752824	NOP10	IPF26697.1|IPF3544.2|CA3424	ORF Predicted by Annotation Working Group; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1753195	1755579	-	orf19.593	1753195	1755579	1	1755579	1753195	1755545	1753224	FGR32	orf19.8225|IPF26688.1|IPF11873.2|Contig4-2431_0002|orf6.5687|CA3425|CaO19.593|SWA2|CaO19.8225|IPF11873	Protein described as similar to S. cerevisiae Swa2p; induced upon adherence to polystyrene; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1755720	1757134	+	orf19.592	1755720	1757134	1	1755720	1757134	1755810	1756997		orf19.8224|IPF26710.1|IPF11869.2|Contig4-2431_0001|orf6.5688|CA3426|CaO19.8224|CaO19.592|IPF11869	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1756869	1758030	-	orf19.590	1756869	1758030	1	1758030	1756869	1757970	1757071		orf19.8222|IPF26715.1|IPF11865.1|orf6.5690|CA3427|CaO19.8222|CaO19.590|IPF11865	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1758246	1759409	-	orf19.589	1758246	1759409	1	1759409	1758246	1759084	1758434	VPS21	orf19.8221|orf19.13721|IPF11863.1|IPF20756.1|IPF18324.1|Contig4-1955_0002|orf6.5691|orf6.5816|CA3428|CA3531|orf19.6364|VPS211|CaO19.589|CaO19.8221|CaO19.6364|VPS212|CaO19.13721	Late endosomal Rab small monomeric GTPase involved in transport of endocytosed proteins to the vacuole; involved in filamentous growth and virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1760126	1761356	+	orf19.6365	1760126	1761356	1	1760126	1761356	1760180	1761298	PTP1	orf19.13722|IPF20741.1|IPF13448.2|orf6.5817|CA3532|CaO19.6365|CaO19.13722|IPF13448	Protein not essential for viability; similar to S. cerevisiae Ptp1p, which is a protein tyrosine phosphatase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1761415	1762189	-	ntar_1358	1761415	1762189	1	1762189	1761415					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1761466	1762224	+	orf19.6366	1761466	1762224	1	1761466	1762224	1761466	1762224		orf19.13723|IPF20753.1|IPF13450.2|orf6.5818|CA3533|CaO19.6366|CaO19.13723|IPF13450	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1762503	1764539	+	orf19.6367	1762503	1764539	1	1762503	1764539	1762547	1764388	SSB1	orf19.13724|HS75|IPF20722.1|IPF13454.2|orf6.5819|CA3534|CaO19.6367|CaO19.13724	Putative heat shock protein; SSB subfamily of the HSP70 family; mRNA in yeast-form cells, germ tubes; at surface of yeast-form cells, but not hyphae; soluble in hyphae; antigenic in human, mouse systemic infection; macrophage, GCN-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1764532	1765972	-	orf19.6369	1764532	1765972	1	1765972	1764532	1765972	1764569		orf19.13726|IPF20732.1|IPF13458.2|orf6.5821|CA3535|CaO19.6369|CaO19.13726|IPF13458	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1766025	1768240	+	orf19.6371	1766025	1768240	1	1766025	1768240	1766062	1767336		orf19.13728|IPF20736.1|IPF5414.2|orf6.5823|CA3536|CaO19.13728|CaO19.6371|IPF5414	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1767218	1770249	-	orf19.6373	1767218	1770249	1	1770249	1767218	1770096	1767349		orf19.13730|IPF20703.1|IPF5418.2|orf6.5825|CA3537|CaO19.6373|DCP2|CaO19.13730|PSU1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1770183	1771517	+	orf19.6374	1770183	1771517	1	1770183	1771517	1770183	1771313		orf19.13731|IPF20740.1|IPF5420.1|orf6.5826|CA3538|CaO19.13731|ATP10|CaO19.6374	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1771616	1772001	-	ntar_1359	1771616	1772001	1	1772001	1771616					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1771901	1773053	+	orf19.6375	1771901	1773053	1	1771901	1773053	1772309	1772668	RPS20	orf19.13732|IPF20783.1|IPF5422.2|orf6.5827|CA3539|CaO19.6375|RPS22|CaO19.13732	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1773491	1775722	+	orf19.6376	1773491	1775722	1	1773491	1775722	1773751	1775493	PTC5	orf19.13733|IPF20726.1|IPF5424.2|orf6.5828|CA3540|CaO19.13733|CaO19.6376	Putative protein phosphatase of the Type 2C-related family (serine/threonine-specific), similar to S. cerevisiae Ptc5p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1775734	1777086	-	orf19.6377	1775734	1777086	1	1777086	1775734	1777064	1775961		orf19.13734|IPF20742.1|IPF5425.1|orf6.5829|CA3541|PPM1|CaO19.6377|CaO19.13734|IPF5425	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1777100	1778042	-	orf19.6378	1777100	1778042	1	1778042	1777100	1777998	1777201	TRM9	orf19.13735|IPF20749.1|IPF5426.1|orf6.5830|CA3542|CaO19.13735|CaO19.6378|IPF5426	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1778118	1778894	+	orf19.6379	1778118	1778894	1	1778118	1778894	1778168	1778626		orf19.13736|IPF20765.1|IPF5428.2|orf6.5831|CA3543|CaO19.6379|GPI17|CaO19.13736|IPF5428	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1778689	1783318	-	orf19.6382	1778689	1783318	1	1783318	1778689	1783213	1778741		orf19.13739|orf19.13740|IPF19490.2|IPF20755.1|IPF12646.2|IPF12648.1|Contig4-2922_0014|orf6.11|orf6.5834|orf6.5835|CA3544|CA3545|orf19.6383|BPT1.3f	Putative MRP/CFTR-subfamily ABC transporter; member of multidrug resistance-associated protein (MRP) subfamily of ABC family; similar to S. cerevisiae Bpt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1783477	1785929	-	orf19.6385	1783477	1785929	1	1785929	1783477	1785893	1783560	ACO1	orf19.13742|orf6.7870|ACON|IPF18134.2|IPF12652.2|Contig4-2922_0012|orf6.5837|CA3546|CaO19.13742|CaO19.6385	Protein described as aconitase; Gcn4p-regulated; amino acid starvation (3-AT treatment), amphotericin B, phagocytosis, farnesol induced; fluconazole-downregulated; expression greater in high iron; antigenic in human or murine infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1787033	1787118	-	tk(uuu)3	1787033	1787118	2	1787118|1787068	1787080|1787033				tK(UUU)3.2	tRNA-Lys predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1787791	1787865	-	tk(uuu)4	1787791	1787865	1	1787865	1787791				tK(UUU)4.2	tRNA-Lys predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1788498	1788670	-	ntar_1360	1788498	1788670	1	1788670	1788498					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1788796	1789054	+	tk(uuu)5	1788796	1789054	1	1788796	1789054	1788920	1789042		tK(UUU)5.2	tRNA-Lys predicted by tRNAscan-SE [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1788960	1791743	-	orf19.6387	1788960	1791743	1	1791743	1788960	1791743	1789044	HSP104	orf19.13747|IPF5137.2|IPF27720.1|IPF18323.2|Contig4-2922_0008|orf6.7865|orf6.5839|CA6306|CA5135|orf19.6389|HSP104.3f	Functional homolog of S. cerevisiae Hsp104p; has chaperone and prion propagation activity in S. cerevisiae; guanidine-insensitive; heat shock/stress induced; downregulated in biofilm upon treatment with farnesol; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1791747	1792049	-	orf19.6390	1791747	1792049	1	1792049	1791747	1792049	1791747		orf19.13748|orf6.7864|CaO19.6390|CaO19.13748	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1792440	1793360	+	orf19.6391	1792440	1793360	1	1792440	1793360	1792440	1793360		orf19.13749|IPF20748.1|IPF5131.1|IPF5131|Contig4-2922_0006|orf6.7863|CA5134|CaO19.13749|CaO19.6391	Increased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1793525	1794705	+	orf19.6392	1793525	1794705	1	1793525	1794705	1793525	1794562		orf19.13750|IPF20745.1|IPF5129.1|Contig4-2922_0002|orf6.7862|CA5133|CaO19.6392|CaO19.13750|IPF5129	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1794787	1796474	+	orf19.6393	1794787	1796474	1	1794787	1796474	1794831	1796081		orf19.13751|IPF20739.1|IPF5128.2|Contig4-2922_0001|orf6.7861|CA5132|GTS1|CaO19.13751|CaO19.6393	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1796331	1800779	-	orf19.6396	1796331	1800779	1	1800779	1796331	1800743	1796583		orf19.13754|orf6.7858|IPF20776.1|IPF5124.1|CA5131|IPF5124|CaO19.6396|CaO19.13754	Putative patatin-like phospholipase; similar to S. cerevisiae Yml059p, which is predicted to be a membrane protein: antigenic during human oral infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1801066	1802223	-	orf19.6398	1801066	1802223	1	1802223	1801066	1802223	1801066		orf19.13756|IPF5121.1|IPF19416.2|Contig4-2839_0001|orf6.163|orf6.7856|CA5130|TCD2|CaO19.6398|IFH2	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1802718	1803816	+	orf19.6399	1802718	1803816	1	1802718	1803816	1802855	1803757	ATS1	orf19.13757|IPF5119.1|IPF17871.3|Contig4-2839_0005|orf6.164|orf6.7855|CA5129|CaO19.6399	Induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1803323	1803885	-	ntar_1361	1803323	1803885	1	1803885	1803323					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1804107	1804979	+	orf19.6400	1804107	1804979	1	1804107	1804979	1804166	1804831		orf19.13758|IPF5118.1|IPF17872.3|Contig4-2839_0006|orf6.165|orf6.7854|CA5128|CaO19.6400|CaO19.13758|IPF5118	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1805595	1807077	+	orf19.6402	1805595	1807077	1	1805595	1807077	1805750	1806949	CYS3	orf19.13760|IPF20738.1|IPF5115.2|Contig4-2839_0007|orf6.7852|CA5127|CaO19.13760|CaO19.6402	Predicted enzyme of sulfur amino acid biosynthesis; upregulated in biofilm; alkaline upregulated; amphotericin B induced; possibly adherence-induced; induced by heavy metal (cadmium) stress, oxidative stress (via Cap1p); Hog1p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1807305	1808729	+	orf19.6403	1807305	1808729	1	1807305	1808729	1807379	1808623		orf19.13761|IPF20735.1|IPF5113.2|Contig4-2839_0009|orf6.7851|CA5126|CaO19.6403|CaO19.13761|SLS1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1808535	1809537	-	orf19.6403.1	1808535	1809537	2	1809537|1809145	1809491|1808535	1809491	1808820	RPP2A	RP2A|CARP2A|RPP2|IPF20786.1|IPF5111.2|Contig4-2839_0010|Contig4-2839_0011|CA5125	Conserved acidic ribosomal protein, likely involved in regulation of translation elongation; interacts with Rpp1Bp; one of four similar ribosomal proteins (Rpp1Ap, Rpp1Bp, Rpp2Ap, Rpp2Bp); CUG start codon; upstream uORFs; Tbf1p-activated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1809736	1809951	+	ntar_1362	1809736	1809951	1	1809736	1809951	1809736	1809867			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1810205	1812049	+	orf19.6404	1810205	1812049	1	1810205	1812049	1810357	1811814	GSH2	orf19.13762|orf6.7850|IPF20730.1|IPF1304.2|Contig4-3073_0031|CA5124|CaO19.13762|CaO19.6404	Protein described as glutathione synthase; transcriptionally regulated by iron; expression greater in high iron; heavy metal (cadmium) stress-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1811878	1812830	-	orf19.6405	1811878	1812830	2	1812830|1812717	1812774|1811878	1812830	1811878		orf19.13763|IPF20751.1|IPF1306.1|Contig4-3073_0030|orf6.7849|CA5123|CaO19.13763|CaO19.6405|IPF1306	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1813285	1813370	+	ti(aau)5	1813285	1813370	2	1813285|1813335	1813322|1813370				tI(AAU)5.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1813441	1814180	-	orf19.6406	1813441	1814180	1	1814180	1813441	1814138	1813770		orf19.13764|IPF20780.1|IPF1308.1|Contig4-3073_0029|orf6.7848|CA5122|MRPS13|CaO19.13764|CaO19.6406|IPF1308	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1814329	1815941	+	orf19.6407	1814329	1815941	1	1814329	1815941	1814387	1815739		orf19.13765|IPF20731.1|IPF1310.2|Contig4-3073_0027|Contig4-3073_0028|orf6.7847|CA5121|CaO19.13765|CaO19.6407|IPF1310	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1816495	1818626	+	orf19.6408	1816495	1818626	1	1816495	1818626	1816749	1818368		orf19.13766|IPF20728.1|IPF1317.2|Contig4-3073_0023|orf6.7846|CA5120|CaO19.13766|CaO19.6408|YDJ1	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1818694	1821567	+	orf19.6411	1818694	1821567	1	1818694	1821567	1818771	1821443		orf19.13769|IPF20702.1|IPF1320.1|Contig4-3073_0022|orf6.7843|YLR386W|CA5119|VAC14|CaO19.13769|CaO19.6411|IPF1320	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ylr386wp; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1821581	1823632	+	orf19.6413	1821581	1823632	1	1821581	1823632	1821704	1823557		orf19.13771|IPF20720.1|IPF1321.1|Contig4-3073_0021|orf6.7841|CA5118|CaO19.13771|CaO19.6413|IPF1321	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	1823553	1825767	-	orf19.6414	1823553	1825767	1	1825767	1823553	1825586	1823664		orf19.13772|IPF20718.1|IPF1323.2|Contig4-3073_0020|orf6.7840|CA5117|CaO19.6414|CaO19.13772|IPF1323	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1826823	1828161	+	orf19.6414.3	1826823	1828161	2	1826823|1827393	1827005|1828161	1826988	1827860	TPM2	IPF20770.1|IPF1325.1|Contig4-3073_0016|CA5116|TPM2.3	Protein described as tropomyosin isoform 2; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); macrophage-induced protein; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1828643	1830200	+	orf19.6416	1828643	1830200	1	1828643	1830200	1828758	1830155		orf19.13774|IPF20733.1|IPF1331.1|Contig4-3073_0014|orf6.7838|CA5115|CaO19.6416|CaO19.13774|IPF1331	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1830382	1831040	+	ntar_1363	1830382	1831040	1	1830382	1831040					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1830821	1832066	-	orf19.6415.1	1830821	1832066	2	1832066|1831384	1831912|1830821	1831363	1831193		IPF20724.1|IPF27718.1	ORF Predicted by Annotation Working Group; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1832372	1835020	+	orf19.6417	1832372	1835020	1	1832372	1835020	1832468	1834996	TSR1	orf19.13775|IPF20707.1|IPF1334.1|Contig4-3073_0011|orf6.7837|CA5114|tsr1|CaO19.13775|CaO19.6417|IPF1334	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1835157	1836610	+	orf19.6418	1835157	1836610	1	1835157	1836610	1835222	1836484		orf19.13776|IPF20737.1|IPF20026.1|Contig4-3073_0009|Contig4-3073_0010|orf6.7836|CA5113|CaO19.13776|CaO19.6418|IPF20026	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1838894	1840448	+	orf19.6420	1838894	1840448	1	1838894	1840448	1838917	1840287	PGA13	orf19.13778|IPF20734.1|IPF1341.1|Contig4-3073_0004|orf6.7834|CA5112|CaO19.6420|CaO19.13778|IPF1341	Putative GPI-anchored protein; described as similar to mucins; induced during cell wall regeneration, and during core caspofungin response; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg and by Cyr1p, Nrg1p, Tup1p, Rlm1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1840504	1841369	-	orf19.6419.1	1840504	1841369	2	1841369|1841144	1841233|1840504	1841324	1840904			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1841913	1842027	-	tl(caa)4	1841913	1842027	2	1842027|1841956	1841989|1841913				tL(CAA)4.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1842149	1844866	-	orf19.6422	1842149	1844866	1	1844866	1842149	1844840	1842333	SSY5	orf19.13780|IPF20706.1|IPF1345.1|Contig4-3073_0034|orf6.7832|CA5111|CaO19.13780|CaO19.6422	Protein similar to S. cerevisiae Ssy5p, which is a component of a complex that senses external amino acids [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1845289	1846491	+	orf19.6423	1845289	1846491	1	1845289	1846491	1845375	1846403		orf19.13781|IPF20744.1|IPF1347.1|Contig4-3074_0047|Contig4-3074_0048|orf6.7831|CA5110|FBP26|CaO19.6423|CaO19.13781	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1846394	1847151	-	orf19.6424	1846394	1847151	1	1847151	1846394	1847151	1846492		orf19.13782|IPF20759.1|IPF1348.1|Contig4-3074_0046|orf6.7830|CA5109|UBC9|CaO19.13782|CaO19.6424	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1847136	1851113	+	orf19.6425	1847136	1851113	1	1847136	1851113	1847221	1850958		orf19.13783|IPF20784.1|IPF1354.1|Contig4-3074_0039|Contig4-3074_0041|Contig4-3074_0043|orf6.7829|CA5108|CaO19.6425|SKI2|CaO19.13783	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1850824	1851787	-	orf19.6431	1850824	1851787	1	1851787	1850824	1851753	1850953		orf19.13789|IPF20752.1|IPF1358.1|Contig4-3074_0037|orf6.7823|CA5107|CaO19.6431|CaO19.13789|IPF1358	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1851866	1854325	+	orf19.6432	1851866	1854325	1	1851866	1854325	1851913	1854213		orf19.13790|IPF20711.1|IPF1361.1|Contig4-3074_0036|orf6.7822|CA5106|CaO19.13790|AFG2|CaO19.6432	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1854210	1855885	-	orf19.6434	1854210	1855885	1	1855885	1854210	1855300	1854302		orf19.13792|IPF20746.1|IPF1363.1|Contig4-3074_0034|orf6.7820|CA5105|CaO19.13792|PEX19|CaO19.6434	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1855543	1855783	+	ntar_1364	1855543	1855783	1	1855543	1855783					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1856017	1856630	+	orf19.6435	1856017	1856630	1	1856017	1856630	1856108	1856506		orf19.13793|IPF20774.1|IPF1364.1|Contig4-3074_0033|orf6.7819|CA5104|CaO19.6435|CaO19.13793|IPF1364	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1856463	1857682	-	orf19.6436	1856463	1857682	1	1857682	1856463	1857646	1856582		orf19.13794|IPF20743.1|IPF1367.1|Contig4-3074_0032|orf6.7818|CA5103|CaO19.6436|CaO19.13794|IPF1367	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1857737	1859668	+	orf19.6437	1857737	1859668	1	1857737	1859668	1857783	1859531	CDC23	orf19.13795|IPF20725.1|IPF1368.2|Contig4-3074_0028|Contig4-3074_0029|orf6.7817|CA5102|CaO19.13795|CaO19.6437	Similar to anaphase-promoting complex component; possibly transcriptionally regulated by Tac1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1859557	1861615	-	orf19.6438	1859557	1861615	1	1861615	1859557	1861426	1859663		orf19.13796|IPF20723.1|IPF1370.2|Contig4-3074_0027|orf6.7816|CA5101|CaO19.6438|LCB1|CaO19.13796	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1861770	1864247	-	orf19.6440	1861770	1864247	1	1864247	1861770	1863991	1861847		orf19.13798|IPF20716.1|IPF1372.2|Contig4-3074_0025|orf6.7814|CA5100|CaO19.6440|CaO19.13798|IPF1372	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1864419	1871805	+	orf19.6442	1864419	1871805	1	1864419	1871805	1864470	1871720	PRP8	orf19.13800|IPF20757.1|IPF1378.2|Contig4-3074_0021|Contig4-3074_0023|Contig4-3074_0024|orf6.7812|CA5099|CaO19.13800|CaO19.6442	Protein similar to S. cerevisiae Prp8p; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1871700	1872578	-	orf19.6443	1871700	1872578	1	1872578	1871700	1872540	1871737		orf19.13801|IPF20750.1|IPF1380.2|Contig4-3074_0019|orf6.7811|CA5098|DCI1|CaO19.6443|CaO19.13801|IPF1380	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1872641	1874827	-	orf19.6444	1872641	1874827	1	1874827	1872641	1874827	1872680		orf19.13802|IPF20712.1|IPF1382.2|Contig4-3074_0015|Contig4-3074_0017|orf6.7810|CA5097|CaO19.13802|CaO19.6444|IPF1382	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1874876	1875949	-	orf19.6445	1874876	1875949	1	1875949	1874876	1875847	1874930	ECI1	orf19.13803|IPF20747.1|IPF1384.1|Contig4-3074_0014|orf6.7809|CA5096|CaO19.6445|CaO19.13803|IPF1384	Protein similar to S. cerevisiae Eci1p, which is involved in fatty acid oxidation; transposon mutation affects filamentous growth; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1875993	1876640	-	orf19.6447	1875993	1876640	1	1876640	1875993	1876622	1876083	ARF1	orf19.13805|ARF|IPF20763.1|IPF1386.1|Contig4-3074_0012|orf6.7807|CA5095|CaO19.6447|CaO19.13805|ARF21	ADP-ribosylation factor, probable GTPase involved in intracellular transport; one of several C. albicans ADP-ribosylation factors; N-myristoylprotein; substrate of Nmt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1876813	1879043	+	orf19.6448	1876813	1879043	1	1876813	1879043	1876856	1879009		orf19.13806|IPF20715.1|IPF1387.2|Contig4-3074_0009|Contig4-3074_0010|orf6.7806|CA5094|CaO19.13806|CaO19.6448|IPF1387	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1879205	1881064	+	orf19.6449	1879205	1881064	1	1879205	1881064	1879205	1881064		orf19.13807|IPF20721.1|IPF1390.2|Contig4-3074_0008|orf6.7805|CA5093|CaO19.6449|YFW4|CaO19.13807|IPF1390	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chrR	1881055	1881148	+	te(uuc)7	1881055	1881148	2	1881055|1881114	1881091|1881148				tE(UUC)7.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1881317	1881532	+	ntar_1365	1881317	1881532	1	1881317	1881532					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1881876	1882556	+	orf19.6450	1881876	1882556	1	1881876	1882556	1881876	1882556			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1882557	1882789	-	tg(gcc)6	1882557	1882789	1	1882789	1882557				tG(GCC)6.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1884908	1885214	-	ntar_1366	1884908	1885214	1	1885214	1884908					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1885119	1885482	+	ntar_1367	1885119	1885482	1	1885119	1885482	1885198	1885416			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1885488	1886507	-	ntar_1368	1885488	1886507	1	1886507	1885488	1885923	1885777			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1888541	1889205	-	rdn5	1888541	1889205	1	1889205	1888541	1888727	1888542	RDN5		5S ribosomal RNA; component of the large (60S) ribosomal subunit; encoded in about 55 copies of the rDNA repeat on Chromosome R [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1890785	1893173	+	rdn18	1890785	1893173	1	1890785	1893173	1892098	1892301	RDN18		18S ribosomal RNA; component of the small (40S) ribosomal subunit; encoded in about 55 copies of the rDNA repeat on Chromosome R [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1893174	1893312	+	its1	1893174	1893312	1	1893174	1893312					 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1893313	1893469	+	rdn58	1893313	1893469	1	1893313	1893469			RDN58		5.8S ribosomal RNA; component of the large (60S) ribosomal subunit; encoded in about 55 copies of the rDNA repeat on Chromosome R [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1893470	1893620	+	its2	1893470	1893620	1	1893470	1893620					 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1893621	1897042	+	rdn25	1893621	1897042	1	1893621	1897042	1895078	1895263	RDN25		25S ribosomal RNA; component of the large (60S) ribosomal subunit; encoded in about 55 copies of the rDNA repeat on Chromosome R; in some strains the gene may contain the self-splicing group I intron (LSU) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1893804	1894073	-	orf19.6834.10	1893804	1894073	1	1894073	1893804	1894073	1893804	TAR1	IPF27401.1	Ortholog of S. cerevisiae Tar1p, encoded within the 25S rRNA gene on the opposite strand; transcription is positively regulated by Tbf1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1898541	1898967	+	orf19.7279.1	1898541	1898967	1	1898541	1898967	1898635	1898898			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1899204	1900496	-	orf19.7279	1899204	1900496	1	1900496	1899204	1900436	1899537		IPF2865.1|Contig4-2992_0004|orf6.8360|CA5523|NIT2|CaO19.7279	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1900825	1901148	+	orf19.7280	1900825	1901148	1	1900825	1901148	1900825	1901148		IPF27333.1|orf6.8361|CaO19.7280	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1902491	1904462	+	orf19.7281	1902491	1904462	1	1902491	1904462	1902531	1904066	PDK2	IPF2861.1|Contig4-2992_0008|orf6.8362|CA5524|CaO19.7281|IPF2861	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1904594	1906157	+	orf19.7282	1904594	1906157	1	1904594	1906157	1904917	1906032	PEX13	IPF2859.1|Contig4-2992_0012|orf6.8363|CA5525|CaO19.7282	Protein required for peroxisomal protein import mediated by PTS1 and PTS2 targeting sequences; transcription is upregulated in an RHE model of oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1906456	1906824	-	orf19.7283	1906456	1906824	1	1906824	1906456	1906824	1906456		IPF2858.1|Contig4-2992_0013|orf6.8364|CaO19.7283	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1907089	1908167	-	orf19.7284	1907089	1908167	1	1908167	1907089	1907965	1907189	ASR2	IPF2857.1|IPF2857|Contig4-2992_0014|orf6.8365|CA5526|CaO19.7284	Gene regulated by cAMP and by osmotic stress; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1908219	1909496	-	orf19.7285	1908219	1909496	1	1909496	1908219	1909464	1908367		IPF2856.1|Contig4-2992_0015|orf6.8366|CA5527|PTI1|CaO19.7285|IPF2856	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1910013	1911455	-	orf19.7286	1910013	1911455	1	1911455	1910013	1911418	1910216	RPN7	IPF2855.1|Contig4-2992_0017|Contig4-2992_0018|orf6.8367|orf6.8368|CA5528|orf19.7287|CaO19.7286	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1911642	1913288	+	orf19.7288	1911642	1913288	1	1911642	1913288	1911800	1913122		IPF2852.1|Contig4-2992_0020|orf6.8369|CA5529|CaO19.7288|ACD99|IPF2852	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1913144	1913890	-	orf19.7290	1913144	1913890	1	1913890	1913144	1913738	1913235		IPF2850.1|Contig4-2992_0021|orf6.8371|CA5530|LSM1|CaO19.7290|SPB8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1914338	1915408	+	orf19.7291	1914338	1915408	1	1914338	1915408	1914361	1915368		IPF2848.1|Contig4-2774_0010|Contig4-2992_0023|orf6.8372|CA5531|GCD14|CaO19.7291	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1915605	1917017	+	orf19.7292	1915605	1917017	2	1915605|1915687	1915620|1917017	1915605	1916846	ARP2	IPF2847.1|Contig4-2774_0007|orf6.8373|CA5532|CaO19.7292	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to cytochalasin D; regulated by Gcn2p and Gcn4p [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1916843	1919097	-	orf19.7293	1916843	1919097	1	1919097	1916843	1918974	1916902	MPS1	IPF2846.1|Contig4-2774_0006|orf6.8374|CA5533|CaO19.7293|IPF2846	Predicted ORF in Assemblies 19, 20 and 21; essential for growth; periodic mRNA expression, peak at cell-cycle S/G2 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1919711	1919784	+	tm(cau)4	1919711	1919784	1	1919711	1919784					tRNA-Met predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1919839	1921531	-	orf19.7295	1919839	1921531	1	1921531	1919839	1921462	1919900		IPF2843.1|Contig4-2774_0003|Contig4-2774_0004|orf6.8376|CA5534|CaO19.7295|SCD5|IPF2843	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1921736	1923283	+	ntar_1369	1921736	1923283	1	1921736	1923283	1922500	1922760			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1922010	1923401	-	orf19.7296	1922010	1923401	1	1923401	1922010	1923260	1922208		IPF2839.1|Contig4-2774_0002|orf6.8377|CA5535|SLP99|CaO19.7296|IPF2839	Predicted ORF in Assemblies 19, 20 and 21; similar to stomatin mechanoreception protein; induced by Rgt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1924764	1926134	-	orf19.7297	1924764	1926134	1	1926134	1924764	1926092	1924941		IPF2837.2|Contig4-2774_0001|Contig4-2774_0012|orf6.8378|CA5536|CaO19.7297|IPF2837	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-induced; Gcn4p-regulated; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1924772	1924952	+	ntar_1370	1924772	1924952	1	1924772	1924952					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1926311	1926589	+	ntar_1371	1926311	1926589	1	1926311	1926589	1926311	1926505			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1926828	1930084	-	orf19.7298	1926828	1930084	1	1930084	1926828	1929888	1926859	CHS2	IPF2836.1|Contig4-2472_0001|orf6.8379|CA5537|CaO19.7298	Chitin synthase; nonessential; required for wild-type chitin deposition in hyphae; transcription is regulated during dimorphic transition; Chs1p and Chs2p, but not Chs3p, are inhibited by the protoberberine HWY-289; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1930891	1932768	+	orf19.7300	1930891	1932768	1	1930891	1932768	1931876	1932700		IPF2830.1|Contig4-2472_0004|orf6.8381|CA5538|CaO19.7300|IPF2830	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1931048	1931347	-	orf19.7299.1	1931048	1931347	1	1931347	1931048	1931347	1931048		IPF27337.1	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1933074	1934844	-	orf19.7301	1933074	1934844	1	1934844	1933074	1934844	1933084		IPF2829.1|Contig4-2245_0002|Contig4-2245_0004|orf6.1910|orf6.8382|orf6.8383|CA5539|CA5540|orf19.7302|Cirt1b.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	1935993	1936730	+	orf19.7303	1935993	1936730	1	1935993	1936730	1935993	1936730		IPF2827.2|Contig4-2245_0006|orf6.8384|CA5541|CaO19.7303|IPF2827	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1936298	1938588	-	orf19.7304	1936298	1938588	1	1938588	1936298	1938292	1936814		IPF19812.1|Contig4-2245_0009|orf6.8385|CA5542|IPF19812|CaO19.7304	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1938585	1938906	+	ntar_1372	1938585	1938906	1	1938585	1938906					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1938912	1939369	+	ntar_1373	1938912	1939369	1	1938912	1939369	1938912	1939115			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1940341	1941980	-	orf19.7305	1940341	1941980	1	1941980	1940341	1941773	1940490		IPF5988.1|Contig4-2983_0002|orf6.8386|CA5543|CaO19.7305|IPF5988	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1942136	1943477	-	orf19.7306	1942136	1943477	1	1943477	1942136	1943395	1942346		IPF5987|Contig4-2983_0004|YPR127W|IPF5987.1|orf6.8387|CA5544|YPR127|CaO19.7306	Protein of aldo-keto reductase family; increased transcription associated with MDR1 overexpression, benomyl or long-term fluconazole treatment; overexpression does not affect drug or oxidative stress sensitivity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1943923	1944963	-	orf19.7307	1943923	1944963	1	1944963	1943923	1944876	1944019		orf6.8388|IPF5986.1|Contig4-2983_0005|CA5545|CaO19.7307|IPF5986	Putative oxidoreductase; similar to S. cerevisiae Yml125p; possible Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1945159	1947061	-	orf19.7308	1945159	1947061	2	1947061|1946763	1946978|1945159	1947002	1945442	TUB1	IPF5983.1|Contig4-2983_0007|orf6.8389|CA5546|TUB1.3	Alpha-tubulin; gene has intron; complements cold-sensitivity of S. cerevisiae tub1 mutant; C. albicans has single alpha-tubulin gene, whereas S. cerevisiae has two (TUB1, TUB3); farnesol-upregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1947557	1948780	+	ntar_1374	1947557	1948780	1	1947557	1948780	1948083	1948394			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1947606	1950048	-	orf19.7310	1947606	1950048	1	1950048	1947606	1950017	1947651		orf6.8391|IPF5981|IPF5981.1|Contig4-2983_0010|CA5547|CaO19.7310	Protein similar to S. cerevisiae Gin3p; transcription is upregulated in response to treatment with ciclopirox olamine; positively regulated by Sfu1p; Hog1p, fluconazole-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	1950486	1951440	+	orf19.7311	1950486	1951440	1	1950486	1951440	1950737	1951321		IPF5978.1|Contig4-2983_0015|orf6.8392|CA5548|CaO19.7311|IPF5978	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1951383	1952933	-	orf19.7312	1951383	1952933	1	1952933	1951383	1952785	1951430	ERG13	IPF5977.1|Contig4-2983_0016|orf6.8393|CA5549|CaO19.7312	Protein similar to S. cerevisiae Erg13p, which is involved in ergosterol biosynthesis; transposon mutation affects filamentous growth; amphotericin B, caspofungin repressed; detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1953990	1955613	-	orf19.7313	1953990	1955613	1	1955613	1953990	1955514	1954069	SSU1	IPF5976.1|Contig4-2983_0020|orf6.8394|CA5550|SSU11|CaO19.7313	Protein similar to S. cerevisiae Ssu1p sulfite transport protein; transposon mutation affects filamentous growth; regulated by Gcn2p and Gcn4p; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1957397	1958844	+	orf19.7314	1957397	1958844	1	1957397	1958844	1957893	1958690	CDG1	IPF5972.1|Contig4-2983_0023|orf6.8395|CA5551|CaO19.7314|IPF5972	Protein described as similar to cysteine dioxygenases; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1958725	1959725	-	orf19.7316	1958725	1959725	1	1959725	1958725	1959725	1958820		IPF5971.1|Contig4-2983_0024|Contig4-2983_0025|orf6.8397|CA5552|CaO19.7316|IPF5971	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1959961	1961511	-	orf19.7317	1959961	1961511	1	1961511	1959961	1961409	1959961		UGA33|IPF5969.2|Contig4-2511_0002|Contig4-2983_0026|orf6.8398|orf6.8399|CA5553|CA5554|orf19.7318|IPF1960.3f	Predicted zinc-finger protein of unknown function; has similarity to S. cerevisiae Uga3p, which is a transcription factor involved in the regulation of gamma-aminobutyrate metabolism genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1961677	1963419	+	orf19.7319	1961677	1963419	1	1961677	1963419	1961827	1963332	SUC1	IPF1962.1|Contig4-2511_0004|orf6.8400|CA5555|CaO19.7319	Putative transcriptional regulator with N-terminal zinc finger; regulates alpha-glucosidase in C. albicans and S. cerevisiae; in S. cerevisiae, complements suc2 mutant sucrose utilization defect and mal13 mutant maltase defect  [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1963423	1964703	-	orf19.7320	1963423	1964703	1	1964703	1963423	1964703	1963423	LIP7	IPF1964.2|Contig4-2511_0006|orf6.8401|CA5556|CaO19.7320	Probable lipase, part of a gene family whose members are differentially expressed during infection; lacks a signal sequence for secretion, unlike other family members; may have a role in nutrition or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1964867	1967027	-	orf19.7321	1964867	1967027	1	1967027	1964867	1966892	1965072		IPF1968.2|Contig4-2511_0007|Contig4-2511_0008|orf6.8402|CA5557|CaO19.7321|IPF1968	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1967072	1967264	+	ntar_1375	1967072	1967264	1	1967072	1967264					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1967229	1967895	-	orf19.7322	1967229	1967895	1	1967895	1967229	1967721	1967278		IPF1969.1|Contig4-2511_0010|orf6.8403|CA5558|CaO19.7322|IPF1969	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1968757	1970388	-	orf19.7323	1968757	1970388	1	1970388	1968757	1970339	1968870	CBP1	CBP|IPF1971.2|orf6.8404|CA5559|CaO19.7323	Corticosteroid binding protein; transcription induced at late log-phase or upon adherence to polystyrene; not induced by corticosterone; contains a possible NAD/FAD binding region; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1969457	1969690	+	ntar_1376	1969457	1969690	1	1969457	1969690					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	1972013	1973532	+	orf19.7324	1972013	1973532	1	1972013	1973532	1972365	1973384	THI13	IPF1974.1|Contig4-3033_0005|orf6.8405|CA5560|CaO19.7324	Protein not essential for viability; similar to S. cerevisiae Thi13p, which is involved in synthesis of the thiamine precursor hydroxymethylpyrimidine; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1973418	1974512	-	orf19.7325	1973418	1974512	1	1974512	1973418	1974446	1973541		IPF1975.1|Contig4-3033_0006|orf6.8406|CA5561|CaO19.7325|SCO1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1974858	1976692	+	orf19.7326	1974858	1976692	1	1974858	1976692	1974889	1976628		IPF1977.2|Contig4-3033_0007|Contig4-3033_0008|orf6.8407|CA5562|IPF1977|CaO19.7326	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1976577	1977510	-	orf19.7327	1976577	1977510	1	1977510	1976577	1977431	1976856	PHO88	IPF1978.1|Contig4-3033_0009|orf6.8408|CA5563|CaO19.7327	Putative role in phosphate transport; biofilm-regulated expression; amphotericin B repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1977725	1980688	-	orf19.7328	1977725	1980688	1	1980688	1977725	1980530	1977825		orf6.8409|IPF1980.1|Contig4-3033_0011|CA5564|CaO19.7328|CAP100|IPF1980	Gene transcription regulated by Mig1p and Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1981017	1981856	+	orf19.7329	1981017	1981856	1	1981017	1981856	1981163	1981666		IPF1981.1|Contig4-3033_0014|orf6.8410|CA5565|CaO19.7329|QRI8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1982172	1982885	-	orf19.7330	1982172	1982885	1	1982885	1982172	1982885	1982172		IPF1983.1|Contig4-3033_0015|orf6.8411|CA5566|CaO19.7330|PET18	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1983245	1984851	+	orf19.7331	1983245	1984851	1	1983245	1984851	1983245	1984831	FCY24	IPF1985.2|Contig4-3033_0016|Contig4-3033_0017|orf6.8412|CA5567|CaO19.7331|TPN12	Putative transporter; more similar to S. cerevisiae Tpn1p, which is a vitamin B6 transporter, than to purine-cytosine permeases; transcription is regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	1985113	1988863	+	orf19.7332	1985113	1988863	1	1985113	1988863	1985195	1988782	ELF1	IPF1989.1|Contig4-3033_0019|orf6.8413|CA5568|CaO19.7332	Protein required for wild-type morphology, growth; Walker A and B (ATP/GTP binding) motifs, ABC transporter consensus; expressed in hyphal, pseudohyphal, and yeast form, upregulated in biofilm; S. pombe homolog is ABC ATPase of mRNA export [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	1989080	1990435	+	orf19.7335	1989080	1990435	2	1989080|1989352	1989204|1990435	1989161	1990063	PRE8	IPF1990.1|Contig4-3033_0021|orf6.8416|CA5569|CaO19.7335	Protein described as alpha-2_sc subunit of proteasome; macrophage-induced protein; regulated by Gcn2p and Gcn4p; transcription is positively regulated by Tbf1p; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	1990499	1992313	-	orf19.7336	1990499	1992313	1	1992313	1990499	1992313	1990499		IPF1992.1|Contig4-3033_0023|Contig4-3033_0024|orf6.8417|CA5570|CaO19.7336|IPF1992	Predicted membrane transporter, member of the drug:proton antiporter (14 spanner) (DHA2) family, major facilitator superfamily (MFS) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	1999195	1999926	+	ntar_1377	1999195	1999926	1	1999195	1999926					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2000142	2002702	+	orf19.7337	2000142	2002702	1	2000142	2002702	2000400	2002514		IPF2001.1|Contig4-1848_0005|Contig4-2924_0003|Contig4-2924_0004|orf6.8418|CA5571|CaO19.7337|IPF2001	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2002929	2003301	+	ntar_1378	2002929	2003301	1	2002929	2003301					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2002983	2005913	-	orf19.7339	2002983	2005913	2	2005913|2005498	2005655|2002983	2005913	2002983	BGL22	IPF2004.1|Contig4-2924_0005|orf6.8420|CA5572|orf19.7339.1|CaO19.7339|BGL99|CA5573|IPF2005|IPF2005.1	[NOT TRANSCRIBED?] Putative glucanase; induced during cell wall regeneration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2003435	2005900	+	ntar_1379	2003435	2005900	1	2003435	2005900	2004301	2004459			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2006118	2006764	-	orf19.7340	2006118	2006764	1	2006764	2006118	2006764	2006432		IPF27331.1|orf6.8421|CaO19.7340	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	2006819	2008093	-	orf19.7341	2006819	2008093	2	2008093|2007872	2007940|2006819	2007958	2006911		IPF2007.1|Contig4-2924_0009|orf6.8422|CA5574|CaO19.7341|IPF2007	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2009048	2009119	-	td(guc)7	2009048	2009119	1	2009119	2009048					tRNA-Asp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2009624	2010407	-	ntar_1380	2009624	2010407	1	2010407	2009624					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2009702	2010377	+	ntar_1381	2009702	2010377	1	2009702	2010377					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2012114	2012744	-	ntar_1382	2012114	2012744	1	2012744	2012114					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2015188	2015873	-	orf19.7341.1	2015188	2015873	1	2015873	2015188	2015578	2015285			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2017305	2021560	+	orf19.7342	2017305	2021560	1	2017305	2021560	2017305	2021417	AXL1	IPF19813.1|Contig4-2379_0005|orf6.8423|CA5575|CaO19.7342|IPF19813	Protein of unknown function, induced by alpha factor; transcription is upregulated in an RHE model of oral candidiasis and in clinical isolates from HIV+ patients with oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	2018557	2018745	-	ntar_1383	2018557	2018745	1	2018745	2018557					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2018894	2019088	-	ntar_1384	2018894	2019088	1	2019088	2018894					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2021680	2023508	+	orf19.7343	2021680	2023508	1	2021680	2023508	2021942	2023318		IPF12538.2|Contig4-2379_0002|orf6.8424|CA5576|CaO19.7343|PRP4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2023595	2026470	+	orf19.7344	2023595	2026470	1	2023595	2026470	2023763	2026270		IPF12537.1|Contig4-2379_0001|orf6.8425|CA5577|CaO19.7344|HDA3|IPF12537	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2026337	2027740	-	orf19.7345	2026337	2027740	1	2027740	2026337	2027614	2026610		IPF12536.3|Contig4-2379_0006|orf6.8426|CA5578|CaO19.7345|IPF12536|IPF12536.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2027893	2028845	-	orf19.6612	2027893	2028845	1	2028845	2027893	2028770	2027970		IPF7932.1|orf6.6224|CA3850|CaO19.6612|IPF7932	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2029011	2031996	-	orf19.6610	2029011	2031996	1	2031996	2029011	2031915	2029141		IPF7938.2|Contig4-2319_0001|Contig4-2790_0015|Contig4-2790_0016|orf6.6222|CA3849|STU2|CaO19.6610|IPF7938	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2032354	2034768	-	orf19.6608	2032354	2034768	1	2034768	2032354	2034660	2032492		IPF7940|IPF7940.1|Contig4-2790_0012|orf6.6220|CA3848|CaO19.6608	Predicted ORF in Assemblies 19, 20 and 21; downregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	2035026	2035284	-	ntar_1385	2035026	2035284	1	2035284	2035026					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2035469	2036503	-	orf19.6607	2035469	2036503	1	2036503	2035469	2036446	2035832		IPF7942.1|Contig4-2790_0009|orf6.6219|CA3847|CaO19.6607|IPF7942	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2037344	2038879	-	orf19.6606	2037344	2038879	1	2038879	2037344	2038879	2037515		IPF7943.2|Contig4-2790_0007|orf6.6218|CA3846|CaO19.6606|IPF7943	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	2038878	2040253	+	orf19.6605	2038878	2040253	1	2038878	2040253	2039230	2040093		IPF7944.2|Contig4-2790_0006|orf6.6217|CA3845|CaO19.6605|IPF7944	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2039939	2041561	-	orf19.6604	2039939	2041561	2	2041561|2041304	2041421|2039939	2041301	2040213		IPF7945.2|Contig4-2790_0004|orf6.6216|CA3844|CaO19.6604|IPF7945	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2041638	2042392	+	ntar_1386	2041638	2042392	1	2041638	2042392	2042003	2042155			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2042071	2042417	-	ntar_1387	2042071	2042417	1	2042417	2042071					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2042681	2043770	+	orf19.6602	2042681	2043770	1	2042681	2043770	2042808	2043677		IPF7947.1|Contig4-2790_0002|orf6.6214|CA3843|CaO19.6602|FMP53|IPF7947	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2043388	2044431	-	orf19.6601.1	2043388	2044431	1	2044431	2043388	2044321	2043818	YKE2	IPF7948.2|Contig4-2790_0001|CA3842|YKE2.3f|YKE2.3	Possible cytoskeletal modulator; transcription induced upon yeast-to-hyphal switch; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2044560	2044840	+	ntar_1388	2044560	2044840	1	2044560	2044840	2044560	2044733			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2044859	2046402	-	orf19.6601	2044859	2046402	1	2046402	2044859	2046291	2045083		IPF16640.2|orf6.6213|CA3841|CaO19.6601|IPF16640	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2047194	2048601	-	orf19.6600	2047194	2048601	1	2048601	2047194	2048280	2047690		IPF12745.1|Contig4-2356_0001|orf6.6212|CA3840|CaO19.6600|IPF12745	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2049231	2049324	+	tn(guu)4	2049231	2049324	2	2049231|2049289	2049268|2049324					tRNA-Asn predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2049404	2050025	-	orf19.6599.1	2049404	2050025	1	2050025	2049404	2049950	2049756		IPF12744.2|Contig4-2356_0004|CA3839|IPF12744	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2050228	2052678	+	orf19.6598	2050228	2052678	1	2050228	2052678	2050368	2052509	WAL1	IPF12743.2|Contig4-2356_0006|orf6.6210|CA3838|CaO19.6598|LAS17	Protein required for hyphal growth and for wild-type cell morphology, polarized budding, endocytosis, vacuole morphology; similar to Wiskott-Aldrich syndrome protein; localizes to cortical actin patches and hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2053040	2054593	+	orf19.6597	2053040	2054593	1	2053040	2054593	2053092	2054267		IPF12741.2|orf6.6209|CA3837|CaO19.6597|IPF12741	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2054016	2055331	-	orf19.6596	2054016	2055331	1	2055331	2054016	2055203	2054292		IPF8179.2|Contig4-2811_0030|orf6.6208|CA3836|CaO19.6596|IPF8179	Protein of unknown function; possibly transcriptionally regulated by Tac1p; transcriptionally activated by Mnl1p under weak acid stress; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2055766	2056044	+	ntar_1389	2055766	2056044	1	2055766	2056044					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2055871	2057241	-	orf19.6595	2055871	2057241	1	2057241	2055871	2057241	2055871	RTA4	IPF8181.1|Contig4-2811_0027|orf6.6207|YOR049C|CA3835|CaO19.6595|RSB12	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Yor049cp, which is involved in fatty acid transport; transposon mutation affects filamentous growth; alkaline downregulated; caspofungin induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2059145	2061382	-	orf19.6594	2059145	2061382	1	2061382	2059145	2061195	2059297	PLB3	IPF8186.1|Contig4-2811_0019|orf6.6206|PLB4|CA3834|CaO19.6594	GPI-anchored cell surface phospholipase B; similar to S. cerevisiae Plb3p; fungal-specific (no human or murine homolog); transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2061248	2061494	+	ntar_1390	2061248	2061494	1	2061248	2061494					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2062819	2063291	+	ntar_1391	2062819	2063291	1	2062819	2063291					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2063769	2065697	+	orf19.6592	2063769	2065697	1	2063769	2065697	2063769	2065538		IPF8192.1|Contig4-2811_0010|orf6.6204|CA3833|CaO19.6592|IPF8192	Predicted membrane transporter, member of the aromatic acid:proton symporter (AAHS) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	2063988	2064672	-	ntar_1392	2063988	2064672	1	2064672	2063988	2064282	2064127			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2065723	2066288	-	ntar_1393	2065723	2066288	1	2066288	2065723					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2066373	2067817	+	orf19.6591	2066373	2067817	1	2066373	2067817	2066600	2067778		IPF8193.1|Contig4-2811_0003|orf6.6203|CA3832|PCD1|CaO19.6591|IPF8193	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2067909	2068679	+	orf19.6590	2067909	2068679	1	2067909	2068679	2068017	2068583		IPF8194.1|Contig4-2811_0001|orf6.6202|CA3831|CaO19.6590|VMA22	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2068592	2069997	-	orf19.6589	2068592	2069997	1	2069997	2068592	2069970	2068624		IPF8195.2|Contig4-2811_0031|orf6.6201|CA3830|SSF1|CaO19.6589|SSF1.3eoc|IPF8195.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2070097	2071868	+	orf19.7546	2070097	2071868	1	2070097	2071868	2070097	2071701		IPF17103.3|Contig4-1679_0002|orf6.8894|CA5957|CaO19.7546|RRP3|RRP3.3eoc|IPF17103.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	2071714	2073144	-	orf19.7547	2071714	2073144	1	2073144	2071714	2072857	2071769		IPF17102.2|Contig4-1679_0001|orf6.8895|CA5958|PIB1|CaO19.7547	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2073408	2074555	+	orf19.7548	2073408	2074555	1	2073408	2074555	2073450	2073986		IPF12936.2|orf6.8896|CA5959|SRB7|CaO19.7548	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2073902	2076290	-	orf19.7549	2073902	2076290	1	2076290	2073902	2076212	2074035	PMT5	IPF12934.1|Contig4-2433_0005|orf6.8897|CA5960|CaO19.7549	Protein mannosyltransferase with an unknown role, expressed at extremely low levels; not required for wild-type hyphal growth, drug resistance, or virulence in mouse systemic infection; one of five PMT family members [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2076354	2077331	+	ntar_1394.1	2076354	2077331	1	2076354	2077331	2076752	2076913			MANUAL ANNOTATION (edit of ntar_1394); ntar_1176-like
Ca21chrR	2077350	2078101	+	ntar_1394.2	2077350	2078101	1	2077350	2078101	2077565	2077753			MANUAL ANNOTATION (edit of ntar_1394); ntar_1176-like
Ca21chrR	2078021	2080150	-	orf19.7550	2078021	2080150	1	2080150	2078021	2080150	2078114	IFA14	IPF12930.2|Contig4-2433_0007|orf6.8898|CA5961|CaO19.7550	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	2081802	2081975	+	ntar_1394.5	2081802	2081975	1	2081802	2081975	2081802	2081975			MANUAL ANNOTATION; ntar_1176-like
Ca21chrR	2082458	2082861	+	ntar_1395	2082458	2082861	1	2082458	2082861	2082566	2082748			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2083441	2083962	+	ntar_1396	2083441	2083962	1	2083441	2083962	2083527	2083706			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2084245	2084608	+	ntar_1396.5	2084245	2084608	1	2084245	2084608	2084351	2084530			MANUAL ANNOTATION; ntar_1176-like
Ca21chrR	2085050	2085521	+	ntar_1397.1	2085050	2085521	1	2085050	2085521	2085113	2085289			MANUAL ANNOTATION (edit of ntar_1397); ntar_1176-like
Ca21chrR	2085819	2086396	+	ntar_1398	2085819	2086396	1	2085819	2086396	2085948	2086151			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2086821	2087232	+	ntar_1399	2086821	2087232	1	2086821	2087232	2086944	2087123			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2087639	2087911	+	ntar_1400	2087639	2087911	1	2087639	2087911	2087671	2087850			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2088379	2088752	+	ntar_1400.50	2088379	2088752	1	2088379	2088752	2088437	2088619			MANUAL ANNOTATION; ntar_1176-like
Ca21chrR	2089214	2089470	+	ntar_1400.51	2089214	2089470	1	2089214	2089470	2089234	2089419			MANUAL ANNOTATION; ntar_1176-like
Ca21chrR	2089782	2089961	+	ntar_1400.52	2089782	2089961	1	2089782	2089961	2089782	2089961			MANUAL ANNOTATION; ntar_1176-like
Ca21chrR	2090707	2092636	+	orf19.7551	2090707	2092636	1	2090707	2092636	2090795	2092468	ALO1	IPF967.1|Contig4-3105_0006|Contig4-3105_0007|orf6.8899|CA5962|CaO19.7551	D-Arabinono-1,4-lactone oxidase, involved in biosynthesis of dehydro-D-arabinono-1,4-lactone, which has a protective role against oxidative damage; required for full virulence in a mouse model of systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2092514	2095423	-	orf19.7552	2092514	2095423	1	2095423	2092514	2095287	2092669		IPF966.1|Contig4-3105_0009|orf6.8900|CA5963|CaO19.7552|IPF966	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2095846	2096774	+	orf19.7553	2095846	2096774	1	2095846	2096774	2095906	2096619		IPF963.1|Contig4-3105_0010|orf6.8901|CA5964|CaO19.7553|IPF963	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2096717	2097154	-	orf19.7555	2096717	2097154	1	2097154	2096717	2097154	2096717			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2096985	2098897	+	orf19.7554	2096985	2098897	1	2096985	2098897	2097128	2098810		orf6.8902|IPF961.1|Contig4-3105_0012|CA5965|CaO19.7554|IPF961	Putative transporter; slightly similar to the Sit1p siderophore transporter; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2098802	2099745	-	orf19.7556	2098802	2099745	1	2099745	2098802	2099576	2098932		IPF959.1|Contig4-3105_0014|orf6.8904|CA5966|CaO19.7556|IPF959	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2099832	2103427	+	orf19.7558	2099832	2103427	1	2099832	2103427	2100853	2103315	YTA6	IPF955.1|Contig4-3105_0017|orf6.8906|CA5967|CaO19.7558|SAP100|IPF955	Protein similar to S. cerevisiae Yta6p ATPase; transposon mutation affects filamentous growth; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2100350	2100712	-	orf19.7557	2100350	2100712	1	2100712	2100350	2100712	2100350	FGR46	IPF27261.1|Contig4-3105_0015|orf6.8905|CaO19.7557	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2106168	2108878	+	orf19.7561	2106168	2108878	1	2106168	2108878	2106215	2108878	DEF1	IPF946.1|EDT1|Contig4-2780_0003|Contig4-3105_0026|Contig4-3105_0028|orf6.8909|CA5968|EED1|CaO19.7561|IPF946	Protein required for filamentous growth and for escape from epithelial cells and dissemination in an RHE model; transcription induced in oral candidiasis clinical isolates; induced by fluconazole, high cell density; hyphally regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chrR	2112794	2114139	-	orf19.7563	2112794	2114139	1	2114139	2112794	2114062	2113037	BET2	IPF941.1|Contig4-3105_0030|orf6.8911|CA5969|CaO19.7563	Transcription is regulated by Mig1p  [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2114321	2116580	-	orf19.7564	2114321	2116580	1	2116580	2114321	2116462	2114336	DPB2	IPF940.1|Contig4-3105_0032|orf6.8912|CA5970|CaO19.7564	Probable subunit of DNA polymerase II (DNA polymerase epsilon), similar to S. cerevisiae Dpb2p; essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2118518	2120543	+	orf19.7565	2118518	2120543	1	2118518	2120543	2118782	2120479	GNP3	IPF937.1|Contig4-3105_0039|orf6.8913|GNP2|CA5971|CaO19.7565	Putative high-affinity glutamine permease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2122690	2124742	+	orf19.7566	2122690	2124742	1	2122690	2124742	2122928	2124643		GNP1|IPF934.1|Contig4-3105_0041|orf6.8914|GNP2|CA5972|CaO19.7566	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; alkaline upregulated by Rim101p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2125399	2126766	+	orf19.7567	2125399	2126766	1	2125399	2126766	2125477	2126766		IPF931.1|Contig4-3105_0044|orf6.8915|CA5973|CaO19.7567|IPF931	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chrR	2127071	2127916	+	orf19.7568	2127071	2127916	1	2127071	2127916	2127071	2127916		IPF930.2|Contig4-3105_0046|orf6.8916|CA5974|CaO19.7568|IPF930	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2127958	2129763	-	orf19.7569	2127958	2129763	1	2129763	2127958	2129688	2128138	SIK1	IPF929.2|Contig4-3105_0047|orf6.8917|CA5975|CaO19.7569	Predicted ORF in Assemblies 19, 20 and 21; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2129917	2132559	-	orf19.7570	2129917	2132559	1	2132559	2129917	2132371	2129960		UGA3|IPF928.1|Contig4-3105_0048|orf6.8918|CA5976|CaO19.7570|IPF928	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Uga3p, which is a transcription factor involved in the regulation of gamma-aminobutyrate metabolism genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2133606	2134873	+	orf19.7571	2133606	2134873	2	2133606|2134186	2133741|2134873	2133698	2134585	UBC4	IPF926.1|Contig4-3105_0053|orf6.8919|CA5977|UBC4.3	Protein similar to S. cerevisiae ubiquitin conjugating enzyme Ubc4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2135031	2139423	+	orf19.7572	2135031	2139423	1	2135031	2139423	2135360	2139283	SPT7	IPF925.1|Contig4-3105_0056|Contig4-3105_0057|orf6.8920|CA5978|CaO19.7572	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2139766	2144310	+	orf19.7574	2139766	2144310	1	2139766	2144310	2139917	2144236		IPF921.1|Contig4-3105_0059|Contig4-3105_0061|orf6.8922|CA5979|CaO19.7574|IPF921	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2144202	2144797	-	orf19.7576	2144202	2144797	2	2144797|2144643	2144710|2144202	2144797	2144339		IPF918|IPF918.1|Contig4-3105_0062|orf6.8924|CA5980|CaO19.7576	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2144900	2146525	-	orf19.7577	2144900	2146525	1	2146525	2144900	2146359	2145052	MSS51	IPF917.1|Contig4-3105_0063|orf6.8925|CA5981|CaO19.7577	Putative mRNA maturation factor; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2146597	2147627	-	orf19.7578	2146597	2147627	1	2147627	2146597	2147575	2146799		IPF915.1|Contig4-3105_0066|orf6.8926|CA5982|CaO19.7578|YOS9|IPF915	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2147997	2149718	+	orf19.7579	2147997	2149718	1	2147997	2149718	2148076	2149641	FGR34	IPF913.1|Contig4-3105_0067|orf6.8927|CA5983|CaO19.7579|IPF913	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2148388	2148572	-	ntar_1401	2148388	2148572	1	2148572	2148388					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2149352	2149492	-	ntar_1402	2149352	2149492	1	2149492	2149352					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2149878	2150324	+	orf19.7580	2149878	2150324	1	2149878	2150324	2149931	2150245		IPF912.1|Contig4-3105_0068|orf6.8928|CaO19.7580	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2150620	2152265	+	orf19.7581	2150620	2152265	1	2150620	2152265	2150750	2152165		IPF911.1|Contig4-3105_0069|orf6.8929|CA5984|CUS1|CaO19.7581	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2152087	2154278	-	orf19.7583	2152087	2154278	1	2154278	2152087	2154225	2152180		ZCF39|OAF1|IPF907.2|Contig4-3105_0071|Contig4-3105_0072|orf6.8931|CA5985|CaO19.7583|IPF907	Putative transcription factor with zinc cluster DNA-binding motif; not essential for viability; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2154879	2155681	+	ntar_1403	2154879	2155681	1	2154879	2155681	2155283	2155519			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2155570	2157254	-	orf19.7585	2155570	2157254	1	2157254	2155570	2157196	2155634	INO1	IPF904.1|Contig4-3105_0074|orf6.8933|CA5986|CaO19.7585	Inositol-1-phosphate synthase; enzyme of inositol biosynthesis; antigenic in human; repressed by farnesol (in biofilm) or caspofungin; regulated during planktonic growth; upstream inositol/choline regulatory element; glycosylation predicted [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2161511	2163790	+	orf19.7586	2161511	2163790	1	2161511	2163790	2161835	2163538	CHT3	IPF696.1|Contig4-3108_0002|orf6.8934|CA5987|CaO19.7586	Chitinase, major; functional homolog of S. cerevisiae Cts1p; 4 N-glycosylation motifs; possible O-mannosylated region; putative signal peptide; hyphal-repressed; farnesol upregulated in biofilm; regulated by Efg1p, Cyr1p, Ras1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2163652	2164687	-	orf19.7588	2163652	2164687	1	2164687	2163652	2164594	2163773		IPF693.1|Contig4-3108_0004|orf6.8936|CA5988|CaO19.7588|IPF693	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2164701	2165498	+	orf19.7589	2164701	2165498	1	2164701	2165498	2164701	2165435		IPF692.1|Contig4-3108_0007|orf6.8937|CA5989|CaO19.7589|IPF692	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcription is activated in the presence of elevated CO2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	2165254	2165459	-	ntar_1404	2165254	2165459	1	2165459	2165254	2165448	2165254			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2165820	2168449	+	orf19.7590	2165820	2168449	1	2165820	2168449	2165996	2168158		IPF690.2|Contig4-3108_0008|Contig4-3108_0010|Contig4-3108_0011|CA5990|CA5991|IPF690.3f|orf19.7591|IPF690.5f|orf6.8938	Protein described as NADH-ubiquinone oxidoreductase; identified in detergent-resistant membrane fraction (possible lipid raft component); predicted N-terminal acetylation; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2169784	2170604	+	ntar_1405	2169784	2170604	1	2169784	2170604	2170226	2170387			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2172065	2172333	-	ntar_1406	2172065	2172333	1	2172333	2172065	2172333	2172148			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2172092	2174894	+	orf19.7592	2172092	2174894	1	2172092	2174894	2172618	2174708	FAA4	IPF20033.1|Contig4-3108_0019|Contig4-3108_0020|orf6.8940|CA5992|CaO19.7592	Predicted acyl CoA synthase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2174732	2176501	-	orf19.7593	2174732	2176501	1	2176501	2174732	2176379	2174925		IPF679.1|Contig4-3108_0024|orf6.8941|CA5993|CaO19.7593|ASP1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2176756	2178309	+	orf19.7594	2176756	2178309	1	2176756	2178309	2176858	2177499		IPF677.1|Contig4-3108_0026|orf6.8942|CA5994|CaO19.7594|IPF677	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2177522	2178950	-	orf19.7595	2177522	2178950	1	2178950	2177522	2178885	2177557		IPF676.1|Contig4-3108_0027|orf6.8943|CA5995|CaO19.7595|IPF676	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2179491	2180523	+	orf19.7596	2179491	2180523	1	2179491	2180523	2179540	2180523		IPF673.1|Contig4-3108_0030|orf6.8944|CA5996|CaO19.7596|PMU2|IPF673	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chrR	2181057	2182004	+	orf19.7597	2181057	2182004	1	2181057	2182004	2181057	2182004	PGA12	IPF672.1|Contig4-3108_0031|orf6.8945|CA5997|PMU3|CaO19.7597	Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2182874	2184313	+	orf19.7598	2182874	2184313	1	2182874	2184313	2182918	2184237		IPF670.2|Contig4-3108_0032|orf6.8946|CA5998|AHC1|CaO19.7598|IPF670	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2184429	2186452	+	orf19.7599	2184429	2186452	1	2184429	2186452	2184474	2186384	UTP5	IPF668.2|Contig4-3108_0035|orf6.8947|CA5999|CaO19.7599|IPF668	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2186408	2187901	-	orf19.7600	2186408	2187901	2	2187901|2187622	2187827|2186408	2187850	2186501	FDH3	IPF666.1|Contig4-3108_0036|orf6.8948|CA6000|FDH11|FDH11.3	Putative protein of glycine catabolism; downregulated by Efg1p under yeast-form but not hyphal growth conditions; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2188349	2189545	+	orf19.7601	2188349	2189545	1	2188349	2189545	2188567	2189382		IPF662.1|Contig4-3108_0038|orf6.8949|CA6001|MRM2|CaO19.7601|IPF662	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2189392	2190542	-	orf19.7602	2189392	2190542	1	2190542	2189392	2190483	2189443		IPF661.1|Contig4-3108_0039|orf6.8950|CA6002|CaO19.7602|AHA1|IPF661	Predicted ORF in Assemblies 19, 20 and 21; heavy metal (cadmium) stress-induced; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2190682	2191627	+	orf19.7603	2190682	2191627	1	2190682	2191627	2191147	2191473		IPF660.1|Contig4-3108_0041|orf6.8951|CA6003|CaO19.7603|IPF660	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2191397	2195474	-	orf19.7604	2191397	2195474	1	2195474	2191397	2195374	2191550		IPF659.1|Contig4-3108_0044|orf6.8952|CA6004|CaO19.7604|TRS120	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2195719	2196702	+	orf19.7605	2195719	2196702	1	2195719	2196702	2195778	2196596	PUP1	IPF654.1|Contig4-3108_0046|orf6.8953|CA6005|CaO19.7605	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2197326	2198257	+	orf19.7606	2197326	2198257	1	2197326	2198257	2197624	2198115		IPF652.1|Contig4-3108_0049|orf6.8954|CA6006|CaO19.7606|IPF652	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chrR	2199676	2200071	+	orf19.7608	2199676	2200071	1	2199676	2200071	2199676	2200071		IPF650.1|Contig4-3108_0053|orf6.8956|CA6007|CaO19.7608|IPF650	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-downregulated; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2201515	2203001	-	ntar_1407	2201515	2203001	1	2203001	2201515	2202356	2202123			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2201728	2202102	+	orf19.7609	2201728	2202102	1	2201728	2202102	2201728	2202102	PGA11	IPF647.1|Contig4-3108_0054|Contig4-3108_0055|orf6.8957|CA6008|CaO19.7609|IPF647	Putative GPI-anchored protein of unknown function; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2206364	2209965	+	orf19.7610	2206364	2209965	1	2206364	2209965	2206947	2209715	PTP3	IPF643.2|Contig4-3108_0065|Contig4-3108_0066|orf6.8958|CA6009|CaO19.7610|IPF643	Protein not essential for viability; similar to S. cerevisiae Ptp3p, which is a protein tyrosine phosphatase; hyphal induced; alkaline upregulated; regulated by Efg1p, Ras1p, cAMP pathways [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2210136	2210738	-	orf19.7611	2210136	2210738	1	2210738	2210136	2210638	2210327	TRX1	IPF640.1|Contig4-3108_0068|orf6.8959|CA6010|CaO19.7611	Similar to thioredoxin; biofilm, benomyl, flucytosine, peroxide induced; amphotericin B, caspofungin repressed; upregulated in the presence of human neutrophils; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2211556	2213874	-	orf19.7612	2211556	2213874	1	2213874	2211556	2213688	2211628	CTM1	IPF639.1|Contig4-3108_0071|orf6.8960|CA6011|CaO19.7612	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2214165	2215601	+	orf19.7613	2214165	2215601	1	2214165	2215601	2214260	2215117	HCR1	IPF638.1|Contig4-3108_0072|orf6.8961|CA6012|CaO19.7613	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2215236	2216261	-	orf19.7614	2215236	2216261	1	2216261	2215236	2216261	2215236		IPF635|IPF635.1|Contig4-3108_0073|orf6.8962|CA6013|CaO19.7614	[NOT TRANSCRIBED?] Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2216391	2217348	+	orf19.7615	2216391	2217348	1	2216391	2217348	2216559	2217305		IPF634.1|Contig4-3108_0076|orf6.8963|CA6014|TRS31|CaO19.7615	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2217426	2218567	+	orf19.7617	2217426	2218567	1	2217426	2218567	2217467	2218099		IPF631.1|Contig4-3108_0079|orf6.8965|CA6015|ARD1|CaO19.7617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2218012	2219015	-	orf19.7618	2218012	2219015	1	2219015	2218012	2218969	2218139		IPF630.1|Contig4-3108_0080|orf6.8966|CA6016|CaO19.7618|IPF630	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2219838	2221914	+	orf19.7619	2219838	2221914	1	2219838	2221914	2219901	2221751		IPF629.1|Contig4-3108_0083|Contig4-3108_0084|orf6.8967|CA6017|CaO19.7619|IPF629	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2221797	2222505	-	orf19.7620	2221797	2222505	1	2222505	2221797	2222451	2221873		IPF627.1|Contig4-3108_0085|orf6.8968|CA6018|CaO19.7620|IPF627	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2222978	2225782	+	orf19.7621	2222978	2225782	1	2222978	2225782	2223004	2225697		IPF625.1|Contig4-3108_0087|orf6.8969|CA6019|ELG1|CaO19.7621|IPF625	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2224888	2225171	-	ntar_1408	2224888	2225171	1	2225171	2224888	2225171	2225037			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2225577	2226733	-	orf19.7622	2225577	2226733	1	2226733	2225577	2226700	2225714	SPT3	IPF624.1|Contig4-3108_0088|orf6.8970|CA6020|CaO19.7622	Functional homolog of S. cerevisiae Spt3p; required for virulence in mouse systemic infection; homozygous null mutant is hyperfilamentous [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2226893	2227453	+	ntar_1422	2226893	2227453	2	2226893|2227162	2226961|2227453					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2227363	2229053	-	orf19.7624	2227363	2229053	1	2229053	2227363	2229053	2227458		IPF621.1|Contig4-3108_0091|orf6.8972|CA6021|CaO19.7624|BFR2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	2229279	2230018	+	orf19.7625	2229279	2230018	1	2229279	2230018	2229458	2229856	PGA1	IPF618.1|Contig4-3108_0092|orf6.8973|CA6022|CaO19.7625|KRE102|IPF618	Putative GPI-anchored protein of unknown function; induced during cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2230292	2231139	+	orf19.7626	2230292	2231139	2	2230292|2230353	2230292|2231139	2230355	2230984	EIF4E	IPF616.1|YOL139C|Contig4-3108_0093|orf6.8974|CA6023|CDC33|CaO19.7626	Putative translation initiation factor eIF4E; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; intron in 5'-UTR [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2230955	2232074	-	orf19.7627	2230955	2232074	1	2232074	2230955	2231921	2231031		IPF615.1|Contig4-3108_0094|orf6.8975|CA6024|CaO19.7627|IPF615	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2232120	2235418	+	orf19.7629	2232120	2235418	1	2232120	2235418	2232120	2235386		IPF614.1|Contig4-3108_0097|orf6.8977|CA6025|CaO19.7629|IPF614	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chrR	2235024	2236143	-	orf19.7631	2235024	2236143	1	2236143	2235024	2236105	2235395	SLD5	IPF610.1|Contig4-3108_0098|orf6.8979|CA6026|CaO19.7631|IPF610	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2236205	2237814	+	orf19.7632	2236205	2237814	1	2236205	2237814	2236271	2237758		IPF609.1|Contig4-3108_0099|orf6.8980|CA6027|CaO19.7632|IPF609	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2237740	2239544	-	orf19.7634	2237740	2239544	1	2239544	2237740	2239475	2237781	MCD1	IPF607.1|Contig4-3108_0100|Contig4-3108_0101|orf6.8982|CA6028|CaO19.7634|IPF607	Protein similar to S. cerevisiae Mcd1p; transcription is repressed in response to alpha pheromone in SpiderM medium; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2240430	2240788	-	ntar_1409	2240430	2240788	1	2240788	2240430					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2240884	2242914	+	orf19.7635	2240884	2242914	1	2240884	2242914	2240886	2242727	DRS1	IPF603.1|Contig4-3108_0103|orf6.8983|CA6029|CaO19.7635	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorouracil (5-FU), tubercidin (7-deazaadenosine); transcription is positively regulated by Tbf1p; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2243399	2243703	-	ntar_1410	2243399	2243703	1	2243703	2243399					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2244051	2245737	-	orf19.7637	2244051	2245737	1	2245737	2244051	2245358	2244156	YHB4	orf6.8985|YHB1|IPF599.1|YHB3|Contig4-3108_0104|CA6030|CaO19.7637|YHB2	Protein related to flavohemoglobins; not required for wild-type nitric oxide resistance; has predicted globin, FAD-binding, and NAD(P)-binding domains but lacks some conserved residues of flavohemoglobins; no mRNA detected [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2245766	2247172	+	orf19.7638	2245766	2247172	1	2245766	2247172	2245865	2247136	PRO1	IPF597.1|Contig4-3108_0106|orf6.8986|CA6031|CaO19.7638	Transcription is regulated by Nrg1p; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2247207	2249653	+	orf19.7642	2247207	2249653	1	2247207	2249653	2247207	2249612		IPF596.1|Contig4-3108_0109|orf6.8990|CA6032|CaO19.7642|VPS3|IPF596	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2249416	2250641	-	orf19.7643	2249416	2250641	1	2250641	2249416	2250641	2249595		IPF592.1|Contig4-3108_0111|orf6.8991|CA6033|COQ2|CaO19.7643	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2250707	2251108	-	orf19.7644	2250707	2251108	1	2251108	2250707	2251108	2250707		IPF590.1|Contig4-3108_0113|orf6.8992|CA6034|CaO19.7644|APC11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2251165	2253178	-	orf19.7645	2251165	2253178	1	2253178	2251165	2253169	2251172		IPF589.1|Contig4-3108_0115|orf6.8993|CA6035|BPL|BPL1|CaO19.7645	Biotin protein ligase; catalyzes covalent attachment of biotin to biotin-dependent enzymes including acetyl CoA carboxylase and pyruvate carboxylase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2253226	2254205	+	orf19.7646	2253226	2254205	1	2253226	2254205	2253226	2254167		IPF585.1|Contig4-3108_0116|orf6.8994|CA6036|CaO19.7646|IPF585	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2254313	2255780	+	orf19.7648	2254313	2255780	1	2254313	2255780	2254323	2255753		IPF582.1|Contig4-3108_0117|orf6.8996|CA6037|CaO19.7648|MTE3|ERC4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2254361	2255117	-	ntar_1411	2254361	2255117	1	2255117	2254361	2254774	2254364			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chrR	2255815	2257053	+	orf19.7650	2255815	2257053	1	2255815	2257053	2255840	2256991	LTV1	IPF579.1|Contig4-3108_0118|orf6.8998|CA6038|CaO19.7650	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2257116	2258377	+	orf19.7652	2257116	2258377	1	2257116	2258377	2257300	2258307	CKA1	IPF576.1|Contig4-3108_0119|orf6.9000|CA6039|CaO19.7652	Putative alpha subunit (catalytic subunit) of protein kinase CK2; Cka1p and Cka2p have a common target with respect to fluconazole resistance; synthetically lethal with CKA2; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2258786	2259962	+	orf19.7654	2258786	2259962	1	2258786	2259962	2258818	2259927	CPR6	IPF574.1|Contig4-3108_0120|orf6.9002|CA6040|CaO19.7654	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed; heavy metal (cadmium) stress-induced; heterozygous null mutant displays sensitivity to virgineone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2260490	2265696	+	orf19.7655	2260490	2265696	1	2260490	2265696	2260510	2265696	RPO21	IPF572.2|Contig4-3003_0030|Contig4-3108_0124|orf6.9003|CA6041|CaO19.7655	Protein similar to S. cerevisiae Rpo21p, RNA polymerase II; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2265749	2266513	+	orf19.7657	2265749	2266513	1	2265749	2266513	2265749	2266495	POP3	IPF4924.1|Contig4-3003_0028|orf6.9005|CA6042|CaO19.7657|IPF4924	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2266553	2267634	+	orf19.7658	2266553	2267634	1	2266553	2267634	2266570	2267541	RFC4	IPF4926.1|Contig4-3003_0027|orf6.9006|CA6043|CaO19.7658	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2267513	2269147	-	orf19.7660	2267513	2269147	1	2269147	2267513	2269109	2267538		IPF4928.1|Contig4-3003_0026|orf6.9008|CA6044|CaO19.7660|SAC2|IPF4928	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2269212	2271211	+	orf19.7661	2269212	2271211	1	2269212	2271211	2269233	2271146	HMI1	IPF4929.1|Contig4-3003_0024|orf6.9009|CA6045|CaO19.7661|IPF4929	ATP-dependent 3' - 5' helicase involved in maintenance of mitochondrial DNA; ortholog of <i>S. cerevisiae</> Hmi1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2271072	2272151	-	orf19.7662	2271072	2272151	1	2272151	2271072	2272137	2271130		IPF4931.1|Contig4-3003_0022|orf6.9010|CA6046|CaO19.7662|RTT103|IPF4931	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2272209	2273303	+	orf19.7663	2272209	2273303	1	2272209	2273303	2272249	2272926		IPF4933.1|Contig4-3003_0020|orf6.9011|CA6047|CaO19.7663|IPF4933	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2272839	2273341	-	orf19.7664	2272839	2273341	1	2273341	2272839	2273334	2272930		IPF4934.1|Contig4-3003_0019|orf6.9012|CA6048|CaO19.7664|IPF4934	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2273390	2273903	-	orf19.7665	2273390	2273903	1	2273903	2273390	2273812	2273426		IPF4935.1|Contig4-3003_0018|orf6.9013|CA6049|CaO19.7665|IPF4935	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2274235	2276724	-	orf19.7667	2274235	2276724	1	2276724	2274235	2276724	2275918	IAH1	IPF4940.1|Contig4-3003_0014|orf6.9015|CA6051|CaO19.7667|IPF4940	Protein similar to S. cerevisiae Iah1p, which is involved in acetate metabolism; mutation confers hypersensitivity to tunicamycin; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chrR	2274335	2275906	+	orf19.7666	2274335	2275906	1	2274335	2275906	2274335	2275906		IPF4939.1|Contig4-3003_0016|orf6.9014|CA6050|SEO13|CaO19.7666|IPF4939	Predicted membrane transporter, member of the anion:cation symporter (ACS) family, major facilitator superfamily (MFS) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chrR	2276786	2278691	+	orf19.7668	2276786	2278691	1	2276786	2278691	2276897	2278609	MAL2	IPF4942.1|Contig4-3003_0013|orf6.9016|CA6052|CaO19.7668|IPF4942	Alpha-glucosidase that hydrolyzes sucrose; required for sucrose utilization; transcriptionally regulated by Suc1p; expression induced by maltose, repressed by glucose; transposon mutation affects filamentous growth; upregulated in RHE model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2278509	2281392	-	orf19.7670	2278509	2281392	1	2281392	2278509	2281388	2278617		IPF4949.1|Contig4-3003_0011|orf6.9018|CA6053|CaO19.7670|IPF4949	Putative Ca2+/H+ antiporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2281476	2282486	-	orf19.7672	2281476	2282486	1	2282486	2281476	2282476	2281481		IPF4952.1|Contig4-3003_0009|orf6.9020|CA6054|CaO19.7672|IPF4952	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2282547	2282964	+	orf19.7673	2282547	2282964	1	2282547	2282964	2282567	2282917		IPF4953.1|Contig4-3003_0006|orf6.9021|CA6055|SMD1|CaO19.7673	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chrR	2282904	2283435	-	orf19.7675	2282904	2283435	1	2283435	2282904	2283424	2282948		IPF4955.1|Contig4-3003_0003|Contig4-3003_0004|orf6.9023|CA6056|MRPL25|CaO19.7675|IPF4955	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2283472	2284673	-	orf19.7676	2283472	2284673	1	2284673	2283472	2284606	2283524	XYL2	IPF4959.1|Contig4-3003_0002|orf6.9024|CA6057|CaO19.7676|IPF4959	Protein described as similar to D-xylulose reductase; immunogenic in mouse; soluble protein in hyphae; Hog1p-induced; induced during cell wall regeneration; caspofungin or fluconazole-induced; Mnl1p-induced in weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2284855	2285394	-	orf19.7678	2284855	2285394	1	2285394	2284855	2285380	2284895		IPF4961.2|Contig4-3003_0001|orf6.9026|CA6058|ATP16|CaO19.7678	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chrR	2285440	2286350	-	orf19.7680	2285440	2286350	1	2286350	2285440	2286350	2285529	CTA26	IPF20034.1|Contig4-1945_0001|orf6.9028|CA6059|TLO2|CTA215|CaO19.7680	Putative transcriptional activator; downregulated by Efg1p; transcription is upregulated in an RHE model of oral candidiasis; member of a family of telomere-proximal genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
CaMTLalpha	372	991	-	mtlalpha2	372	991	2	991|447	507|372	991	372	MTLALPHA2	ALPHA2|orf19.10708	A1p and Alpha2p together repress white-opaque switching and mating (an opaque-specific process); homeodomain; gene of MTLalpha (Mating Type Like) locus; a/alpha mating type may increase virulence, provides competitive advantage [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
CaMTLalpha	1698	2987	+	obpalpha	1698	2987	1	1698	2987	1698	2987	OBPALPHA	orf19.10709|orf19.10710	Similar to oxysterol binding protein; gene is located within the MTLalpha mating-type-like locus [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
CaMTLalpha	3231	6164	+	orf19.10711	3231	6164	1	3231	6164	3231	6164	PIKALPHA	PIK1|CaO19.10711	Putative phosphatidylinositol kinase; gene is located within the MTLalpha mating-type-like locus [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
CaMTLalpha	6376	6957	+	orf19.10712	6376	6957	1	6376	6957	6376	6957	MTLALPHA1	ALPHA1|MTLalpha1|CaO19.10712	Master regulator (activator) of alpha mating type; gene of the MTLalpha (Mating Type Like) locus; ortholog of S. cerevisiae Alpha1p; a/alpha mating type may increase virulence, offers competitive advantage [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
CaMTLalpha	6992	8668	-	orf19.10713	6992	8668	1	8668	6992	8668	6992	PAPALPHA	PAP1|CaO19.10713	Putative poly(A) polymerase; PAP is inhibited by parnafungin antifungals; gene is located within the MTLalpha mating-type-like locus [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]