Table S5. List of 1,150 PCR products that hybridized with all H. pylori strains virtual genome position PCR product 1 HP0001 2 HP0002 3 HP0003 4 HP0004* 5 HP0005 6 HP0006 8 HP0010 9 HP0011 10 HP0012 11 HP0013 12 HP0014 13 HP0015 14 HP0016 15 HP0017 16 HP0018 17 HP0019 18 HP0020 19 HP0021 20 HP0022 22 HP0026 23 HP0027 24 HP0028 25 HP0029 27 HP0031 29 HP0033 30 HP0034 31 HP0035 32 HP0036 33 HP0037 34 HP0038 35 HP0039M 36 HP0040 37 HP0041* 38 HP0042 39 HP0043 40 HP0044 41 HP0045 43 HP0047 44 HP0048 45 HP0049 54 HP0055 55 HP0056 65 HP0066* 66 HP0067 67 HP0068 68 HP0069 69 HP0070 70 HP0071 71 HP0072 72 HP0073 73 HP0074 74 HP0075 75 HP0076 76 HP0077 79 HP0080* 81 HP0082 82 HP0083 83 HP0084 84 HP0085 85 HP0086 86 HP0087 87 HP0088 88 HP0089 89 HP0090 91 HP0092 92 HP0093 93 HP0094* 94 HP0095 95 HP0096 96 HP0097 97 HP0098 98 HP0099 99 HP0100 100 HP0101 101 HP0102 103 HP0104 104 HP0105 105 HP0106 106 HP0107 108 HP0109 109 HP0110 110 HP0111 111 HP0112 113 HP0114 114 HP0115 115 HP0116 116 HP0117 120 HP0121 121 HP0122* 122 HP0123 123 HP0124 124 HP0125 125 HP0126 126 HP0127 128 HP0129 129 HP0130 130 HP0132 131 HP0133 132 HP0134 133 HP0135* 134 HP0136 135 HP0137 136 HP0138 137 HP0139 138 HP0140 139 HP0141* 140 HP0142 141 HP0143 142 HP0144 143 HP0145 144 HP0146 145 HP0147 146 HP0148 147 HP0149 148 HP0150 149 HP0151 150 HP0152 151 HP0153 152 HP0154 153 HP0155 154 HP0156 155 HP0157 156 HP0158 158 HP0160* 159 HP0162 160 HP0163 161 HP0164 163 HP0166 164 HP0167 165 HP0168 166 HP0169 167 HP0170 168 HP0171 170 HP0173 171 HP0174 172 HP0175 173 HP0176 174 HP0177 177 HP0178 178 HP0179 179 HP0180 180 HP0181 181 HP0182 182 HP0183 183 HP0184 188 HP0189* 189 HP0190 190 HP0191 191 HP0192 192 HP0193 193 HP0194 194 HP0195 195 HP0196 196 HP0197 197 HP0198 198 HP0199 199 HP0200 200 HP0201 201 HP0202 202 HP0203 206 HP0207 207 HP0208* 208 HP0209* 209 HP0210 211 HP0212 212 HP0213 213 HP0214 214 HP0215 215 HP0216 217 HP0218 218 HP0219 219 HP0220 220 HP0221 222 HP0223 223 HP0224 224 HP0226 226 HP0228* 227 HP0229* 228 HP0230 229 HP0231 230 HP0232 231 HP0233 232 HP0234 233 HP0235 234 HP0236 235 HP0237 236 HP0238 237 HP0239 238 HP0240 239 HP0241 240 HP0242 241 HP0243 242 HP0244 243 HP0245 244 HP0246 245 HP0247 246 HP0248 247 HP0249 248 HP0250 249 HP0251 253 HP0255 254 HP0256 255 HP0257 256 HP0258 257 HP0259 261 HP0263 262 HP0264 263 HP0265 264 HP0266 265 HP0267 266 HP0268 267 HP0269 268 HP0270 269 HP0271 270 HP0272 271 HP0273 272 HP0274 273 HP0275 274 HP0276 275 HP0277 276 HP0278 277 HP0279 278 HP0280 279 HP0281 280 HP0282 281 HP0283 282 HP0284 283 HP0285 284 HP0286 285 HP0287 286 HP0288 288 HP0290 289 HP0291 290 HP0292 291 HP0293 293 HP0295 294 HP0296 295 HP0297 296 HP0298 297 HP0299 298 HP0300 299 HP0301 300 HP0302 301 HP0303 302 HP0304 303 HP0305 304 HP0306 305 HP0307 306 HP0308 307 HP0309 308 HP0310 310 HP0312 311 HP0313 315 HP0318 316 HP0319 317 HP0320 318 HP0321 319 HP0322* 320 HP0323 321 HP0324 322 HP0325 323 HP0326 324 HP0327 325 HP0328 326 HP0329 327 HP0330 328 HP0331 329 HP0332* 330 HP0333 331 HP0334 335 HP0337 344 HP0347 345 HP0348 346 HP0349 347 HP0350 348 HP0351 349 HP0352 350 HP0353 351 HP0354 352 HP0355 356 HP0358 357 HP0359* 358 HP0360 359 HP0361 360 HP0362 361 HP0363 362 HP0364 363 HP0366 364 HP0367 367 HP0370 368 HP0371 369 HP0372 371 HP0374 372 HP0375 373 HP0376 374 HP0377 375 HP0378 377 HP0380 378 HP0381 379 HP0382* 380 HP0383 381 HP0384* 382 HP0385 383 HP0386 384 HP0387 385 HP0388 386 HP0389 387 HP0390 388 HP0391 389 HP0392 390 HP0393 391 HP0394 392 HP0395* 393 HP0396 394 HP0397 396 HP0399 397 HP0400 398 HP0401 399 HP0402 400 HP0403 401 HP0404 402 HP0405 403 HP0406 406 HP0409 407 HP0410 412 HP0415 413 HP0416 414 HP0417 415 HP0418 416 HP0419 417 HP0420 418 HP0421 428 HP0422 464 HP0459* 467 HP0463 468 HP0464 469 HP0465 470 HP0466 471 HP0467 472 HP0468 473 HP0469 474 HP0470 475 HP0471 480 HP0476 483 HP0479 484 HP0480 489 HP0485 490 HP0486 491 HP0487 494 HP0490 497 HP0493 498 HP0494 499 HP0495 500 HP0496 501 HP0497* 502 HP0498 503 HP0499 504 HP0500 505 HP0501 510 HP0506 511 HP0507 512 HP0508 513 HP0509 514 HP0510 515 HP0512 517 HP0514 518 HP0515 519 HP0516 520 HP0517 521 HP0518 551 HP0549 552 HP0550 553 HP0551 554 HP0552 555 HP0553 556 HP0554 557 HP0555 559 HP0557 560 HP0558 562 HP0560 563 HP0561 564 HP0562 565 HP0563 567 HP0565 568 HP0566 569 HP0567 570 HP0568 571 HP0569 572 HP0570 573 HP0571 574 HP0572 575 HP0573 576 HP0574 577 HP0575 578 HP0576 579 HP0577 580 HP0578 581 HP0579 582 HP0580 583 HP0581 584 HP0582 585 HP0583 586 HP0584 587 HP0585 588 JHP0533 589 HP0586 590 HP0587 591 HP0588 592 HP0589 593 HP0590 594 HP0591 598 HP0594 599 HP0595 600 HP0596 601 HP0597 602 HP0598 605 HP0601 606 HP0602 607 HP0603 608 HP0604 609 HP0605 610 HP0606 611 HP0607 612 HP0608 613 HP0609 614 HP0610 619 HP0615 620 HP0616 621 HP0617 622 HP0618 625 HP0620 626 HP0621 627 HP0622 628 HP0623 629 HP0624 630 HP0625 631 HP0626 632 HP0627 633 HP0628 634 HP0629 635 HP0630 636 HP0631 637 HP0632 638 HP0633 639 HP0634 640 HP0635 642 HP0637 643 HP0638 644 HP0639 645 HP0640 650 HP0643 651 HP0644 652 HP0645 653 HP0646 654 HP0647 655 HP0648 656 HP0649 657 HP0650 659 HP0652 660 HP0653 661 HP0654 662 HP0655 663 HP0656 664 HP0657 665 HP0658 666 HP0659 667 HP0660 668 HP0661 669 HP0662 670 HP0663 671 HP0664 672 HP0665 673 HP0666 678 HP0671 679 HP0672 683 HP0675 684 HP0676 685 HP0677 686 HP0679 687 HP0680 690 HP0683 691 HP0684 692 HP0685 694 HP0687 697 HP0690 698 HP0691 699 HP0692 700 HP0693 701 HP0694 707 HP0699 708 HP0700 709 HP0701 710 HP0702 711 HP0703 712 HP0705 713 HP0706 714 HP0707 718 HP0711 721 HP0714 722 HP0715 723 HP0716 724 HP0717 725 HP0718 726 HP0719 727 HP0720 730 HP0723 731 HP0724 733 HP0726 734 HP0727 735 HP0728 736 HP0729 741 HP0734 742 HP0735 743 HP0736 744 HP0737 745 HP0738 746 HP0739 747 HP0740 748 HP0741 749 HP0742 750 HP0743 752 HP0745 753 HP0746 754 HP0747 755 HP0748 756 HP0749 757 HP0750 758 HP0751 759 HP0752 760 HP0753 761 HP0754 762 HP0755 763 HP0756 764 HP0757 765 HP0758 766 HP0759 768 HP0761 770 HP0763 776 HP0770 777 HP0771 778 HP0772 779 HP0773 780 HP0774 781 HP0775 782 HP0776 783 HP0777 784 HP0778 785 HP0779 787 HP0781 788 HP0782 789 HP0783 790 HP0784 791 HP0785 792 HP0786 793 HP0787 794 HP0788 798 HP0791 799 HP0792* 800 HP0793 801 HP0794 802 HP0795 803 HP0796 809 HP0802 810 HP0803 811 HP0804 812 HP0805 813 HP0806 814 HP0807 815 HP0808 816 HP0809 817 HP0810 818 HP0811 819 HP0812 820 HP0813 821 HP0814 822 HP0815 825 HP0816 826 HP0817 827 HP0818 828 HP0819 829 HP0820 830 HP0821 831 HP0822 832 HP0823 833 HP0824 834 HP0825 835 HP0826 836 HP0827 837 HP0828 838 HP0829 839 HP0830 840 HP0831 841 HP0832 842 HP0833 843 HP0834 844 HP0835 845 HP0836 846 HP0837 847 HP0838 848 HP0839 849 HP0840 850 HP0841 851 HP0842 852 HP0843* 853 HP0844* 854 HP0845* 859 HP0851 861 HP0853 865 HP0857 866 HP0858 867 HP0859 868 HP0860 869 HP0861 870 HP0862 871 HP0863 872 HP0864 873 HP0865 874 HP0866 875 HP0867 876 HP0868 877 HP0869 878 HP0870 879 HP0871 880 HP0872 882 HP0874 883 HP0875 884 HP0876 885 HP0877 886 HP0878* 887 HP0879 892 HP0883 893 HP0884 894 HP0885 895 HP0886 898 HP0888 899 HP0889 900 HP0890 901 HP0891 906 HP0896* 915 HP0898 916 HP0899 917 HP0900 923 HP0906 924 HP0907 925 HP0908 928 HP0911 929 HP0912 930 HP0913 931 HP0914 932 HP0915 933 HP0916 934 HP0918 935 HP0919 936 HP0920 937 HP0921 939 HP0923* 940 HP0924* 941 HP0925 942 HP0926 943 HP0927 944 HP0928 945 HP0929 946 HP0930 947 HP0931 948 HP0932 949 HP0933 950 HP0934 951 HP0935 956 HP0939 957 HP0940 958 HP0941 959 HP0942 960 HP0943 961 HP0944 963 HP0946 965 HP0948 966 HP0949 967 HP0950 968 HP0951 969 HP0952 970 HP0953 971 HP0954 972 HP0955 973 HP0956 974 HP0957 975 HP0958 976 HP0959 977 HP0960 978 HP0961 987 HP0969 988 HP0970 989 HP0971 990 HP0972 992 HP0974 994 HP0976 995 HP0977 996 HP0978 997 HP0979 1002 HP0983 1061 HP1010 1062 HP1011 1063 HP1012 1064 HP1013 1065 HP1014 1067 HP1016 1068 HP1017 1070 HP1019 1071 HP1020 1072 HP1021 1073 HP1022 1074 HP1023 1075 HP1024 1076 HP1025 1077 HP1026 1080 HP1029* 1081 HP1030 1082 HP1031 1083 HP1032 1084 HP1033 1085 HP1034 1086 HP1035 1087 HP1036 1088 HP1037 1089 HP1038 1090 HP1039 1091 HP1040 1092 HP1041 1093 HP1042 1094 HP1043 1095 HP1044 1098 HP1047 1099 HP1048 1100 HP1049 1101 HP1050 1102 HP1051 1103 HP1052 1104 HP1053 1105 HP1054 1106 HP1055 1107 HP1056 1108 HP1057 1109 HP1058 1110 HP1059 1111 HP1060 1112 HP1061 1113 HP1062 1114 HP1063 1115 HP1064 1117 HP1066 1118 HP1067 1119 HP1068 1120 HP1069 1121 HP1070* 1122 HP1071 1123 HP1072 1124 HP1073 1126 HP1075 1127 HP1076 1128 HP1077 1131 HP1080 1132 HP1081 1133 HP1082 1134 HP1083 1135 HP1084 1136 HP1085 1137 HP1086 1138 HP1087 1139 HP1088 1140 HP1089 1141 HP1090 1142 HP1091 1143 HP1092 1148 HP1098 1149 HP1099 1150 HP1100 1151 HP1101 1152 HP1102 1153 HP1103 1154 HP1104 1155 HP1105 1157 HP1106 1158 HP1107 1159 HP1108 1160 HP1109 1161 HP1110 1162 HP1111 1163 HP1112 1164 HP1113 1165 HP1114 1170 HP1118 1171 HP1119 1172 HP1120 1174 HP1121 1175 HP1122* 1176 HP1123 1177 HP1124 1179 HP1126 1180 HP1127 1182 HP1129 1183 HP1130 1184 HP1131 1185 HP1132 1186 HP1133 1187 HP1134 1188 HP1135 1189 HP1136 1190 HP1137 1191 HP1138 1192 HP1139 1193 HP1140 1194 HP1141 1196 HP1143 1200 HP1147 1201 HP1148 1202 HP1149 1203 HP1150 1204 HP1151 1205 HP1152 1206 HP1153 1207 HP1154 1208 HP1155 1209 HP1156* 1210 HP1157 1211 HP1158 1212 HP1159 1213 HP1160 1214 HP1161 1215 HP1162 1216 HP1163 1217 HP1164 1218 HP1165 1219 HP1166 1220 HP1167 1221 HP1168 1222 HP1169 1223 HP1170 1224 HP1171 1225 HP1172 1226 HP1173 1227 HP1174 1228 HP1175 1229 HP1177 1230 HP1178 1231 HP1179 1232 HP1180 1233 HP1181 1234 HP1182 1235 HP1183 1236 HP1184 1237 HP1185 1238 HP1186 1241 HP1189 1242 HP1190 1243 HP1191 1246 HP1195 1247 HP1196 1248 HP1197 1249 HP1198 1250 HP1199 1251 HP1200 1252 HP1201 1253 HP1202 1254 HP1203 1255 HP1204 1256 HP1205 1257 HP1206 1258 HP1207 1259 HP1208 1263 HP1211 1264 HP1212 1265 HP1213 1266 HP1214 1267 HP1215 1268 HP1216 1269 HP1217 1270 HP1218 1272 HP1220 1273 HP1221 1274 HP1222 1275 HP1223 1276 HP1224 1277 HP1225 1278 HP1226 1279 HP1227 1280 HP1228 1281 HP1229 1282 HP1230 1283 HP1231 1284 HP1232 1285 HP1233 1286 HP1234 1287 HP1235 1288 HP1236 1289 HP1237 1292 HP1240 1293 HP1241 1294 HP1242 1296 HP1244 1297 HP1245 1298 HP1246 1299 HP1247 1300 HP1248 1301 HP1249 1303 HP1251 1304 HP1252 1305 HP1253 1306 HP1254 1307 HP1255 1308 HP1256 1309 HP1257 1310 HP1258 1311 HP1259 1312 HP1260 1313 HP1261 1314 HP1262 1315 HP1263 1316 HP1264 1317 HP1265 1318 HP1266 1319 HP1267 1320 HP1268 1321 HP1269 1322 HP1270 1323 HP1271 1324 HP1272 1325 HP1273 1326 HP1274 1327 HP1275 1329 HP1277 1330 HP1278 1331 HP1279 1332 HP1280 1333 HP1281 1334 HP1282 1336 HP1284 1337 HP1285 1342 HP1290 1343 HP1291 1344 HP1292 1345 HP1293 1346 HP1294 1347 HP1295 1348 HP1296 1349 HP1297 1350 HP1298 1351 HP1299 1352 HP1300 1353 HP1301 1354 HP1302 1355 HP1303 1356 HP1304 1357 HP1305 1359 HP1307 1360 HP1308 1361 HP1309 1362 HP1310 1363 HP1311 1364 HP1312 1365 HP1313 1366 HP1314 1367 HP1315 1368 HP1316 1369 HP1317 1370 HP1318 1371 HP1319 1372 HP1320 1373 HP1321 1375 HP1323* 1377 HP1325 1378 HP1326 1379 HP1327 1380 HP1328 1381 HP1329 1382 HP1330 1383 HP1331 1384 HP1332 1385 HP1333 1387 HP1335 1388 HP1336 1389 HP1337 1390 HP1338 1396 HP1344 1397 HP1345 1398 HP1346 1399 HP1347 1400 HP1348 1401 HP1349 1402 HP1350 1405 HP1353 1407 HP1355 1408 HP1356 1409 HP1357 1410 HP1358 1411 HP1359 1412 HP1360 1413 HP1361 1414 HP1362 1415 HP1363 1416 HP1364 1425 HP1372 1426 HP1373 1427 HP1374 1428 HP1375 1429 HP1376 1430 HP1377 1431 HP1378 1432 HP1379 1433 HP1380 1440 HP1385 1441 HP1386 1442 HP1387 1447 HP1391 1448 HP1392 1449 HP1393 1450 HP1394 1451 HP1395 1455 HP1398 1456 HP1399 1463 HP1406 1464 HP1407 1471 HP1413 1472 HP1414 1474 HP1416 1476 HP1418 1477 HP1419 1478 HP1420 1479 HP1421 1480 HP1422 1482 HP1424 1486 HP1428 1487 HP1429 1488 HP1430 1489 HP1431 1492 HP1434 1493 HP1435 1498 HP1440 1499 HP1441 1500 HP1442 1501 HP1443 1502 HP1444 1503 HP1445 1504 HP1446 1505 HP1447 1506 HP1448 1507 HP1449 1508 HP1450 1509 HP1451 1510 HP1452 1512 HP1454* 1517 HP1459 1518 HP1460 1519 HP1461 1520 HP1462* 1521 HP1463* 1523 HP1465 1524 HP1466 1526 HP1468 1527 HP1469 1528 HP1470 1531 HP1473 1533 HP1475 1534 HP1476 1535 HP1477 1536 HP1478 1537 HP1479 1538 HP1480 1539 HP1481 1540 HP1482 1541 HP1483 1542 HP1484 1543 HP1485 1544 HP1486 1545 HP1487 1546 HP1488 1547 HP1489 1548 HP1490 1549 HP1491 1550 HP1492 1551 HP1493 1552 HP1494 1553 HP1495 1554 HP1496 1555 HP1497 1556 HP1498 1559 HP1501 1561 HP1503 1562 HP1504 1563 HP1505 1564 HP1506 1565 HP1507 1566 HP1508 1567 HP1509 1569 HP1511 1570 HP1512 1571 HP1513 1572 HP1514 1582 HP1523 1583 HP1524 1584 HP1525 1585 HP1526 1586 HP1527 1587 HP1529 1589 HP1531 1590 HP1532 1591 HP1533 1597 HP1538 1598 HP1539 1599 HP1540 1600 HP1541 1601 HP1542* 1602 HP1543 1603 HP1544 1604 HP1545 1605 HP1546 1606 HP1547 1607 HP1548 1608 HP1549 1609 HP1550 1610 HP1551 1611 HP1552 1612 HP1553 1613 HP1554 1614 HP1555 1615 HP1556 1616 HP1557 1617 HP1558 1618 HP1559 1621 HP1562 1622 HP1563 1623 HP1564 1624 HP1565 1625 HP1566 1626 HP1567 1627 HP1568 1628 HP1569 1629 HP1570 1630 HP1571 1631 HP1572* 1632 HP1573 1633 HP1574 1634 HP1575 1635 HP1576 1636 HP1577 1638 HP1579 1639 HP1580 1640 HP1581 1641 HP1582 1642 HP1583 1643 HP1584 1644 HP1585 NOTE: the virtual genome position corresponds to the sequential position within Figure 1. PCR products with an "M" suffix were included as ORFs in earlier versions of the genome sequences but are currently considered to represent parts of the following gene product in more modern versions. * indicates that the CDS is variably present or absent in H. acinonychis