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The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods

Fig 6

Extended haplotype homozygosity in regions under selection.

Panels on the left represent the decay of EHH, or the probability of homozygosity at a certain base across 2 randomly chosen chromosomes in a population. Plots on the right represent existing haplotypes in a population, with the lower portion of the graph depicting haplotypes with the derived allele (red) and the upper part showing haplotypes carrying the ancestral allele (blue). Unique haplotypes in a population are not represented. Legend: CEU—Utah Residents (CEPH) with Northern and Western Ancestry; YRI—Yoruba in Ibadan, Nigeria; CHB—Han Chinese in Beijing, China; 1KG: 1000 Genomes Project. * Earliest appearance of the homozygous derived allele in the samples analysed.

Fig 6