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Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

Fig 10

Xiphophorus reticulate evolution estimated with SNaQ.

from 1183 genes, h = 2, rooted with the southern swordtails outgroup clade (SS). NS: northern swordtails, SP: southern platyfishes, NP: northern platyfishes. Black edges: major tree (including hybrid edges with γ > 0.5). Colored solid arrows: minor hybrid edges, annotated by their estimated γ. Black numbers: bootstrap support for edges in the major tree, if different from 100%. Colored numbers: bootstrap support for the placement of minor hybrid edges. One reticulation had 75% support for a different donor lineage (dotted arrow) than inferred from the original data.

Fig 10

doi: https://doi.org/10.1371/journal.pgen.1005896.g010