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Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

Fig 2

Rooted network (left) and its semi-directed version (top right).

Quartet CFs expected under the network do not depend on the root placement, and are weighted averages of quartet CFs expected under the unrooted trees (bottom right).

Fig 2

doi: https://doi.org/10.1371/journal.pgen.1005896.g002