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Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

Figure 5

P. gigantea transcriptome.

Scatterplots show the distribution of RNA-seq RPKM values (log2) for 11,376 P. gigantea genes when grown on basal salts containing A, acetone-extracted loblolly pine wood (ELP) or B, non-extracted loblolly pine wood (NELP) relative to glucose (Glc). Plot lines define 2-fold borders and best fit regression. Darkened points represent 164 (A) and 145 (B) transcripts accumulating>4-fold at p<0.01. Venn diagram (C) illustrates genes with RPKM signals>10 and upregulated>4-fold in NELP or ELP relative to Glc.

Figure 5

doi: https://doi.org/10.1371/journal.pgen.1004759.g005