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Genetic Influences on Translation in Yeast

Figure 2

Expression in BY vs. RM and ASE in the hybrid.

Shown are log10-transformed normalized read counts based on the downsampled data (Methods). Grey diagonal lines mark identity. Light red points are genes with significant differences (Bonferroni corrected: p<9e-6 in parent data and p<1.5 e-5 in hybrid data), darker red points are significant genes with a fold change ≥2. The blue circles denote genes that were called significant by DESeq (Benjamini-Hochberg adjusted p<0.05). A–C: parental comparisons, D–F: hybrid ASE. Note that in F) only four of the nine genes with significant TE difference identified by DESeq are shown, the remaining five had abundance too low to be included in the downsampled data (Methods).

Figure 2

doi: https://doi.org/10.1371/journal.pgen.1004692.g002