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Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus

Figure 3

ML tree derived from the concatenation of 35 widespread, single-copy genes.

The amino acid alignment was trimmed as explained in the Materials and methods section to remove non-informative positions, resulting in 26,604 positions. The tree was estimated using the rtREV evolutionary model implemented in RAxML. Bootstrap analysis was performed based on 100 replicates, and the three nodes with support below 100 are indicated. Scale bar indicates average number of amino acid substitutions per site.

Figure 3

doi: https://doi.org/10.1371/journal.pgen.1004078.g003