About the Authors

Reo Maruyama

Contributed equally to this work with: Reo Maruyama, Sibgat Choudhury

Affiliations Departments of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts, United States of America, Department of Medicine, Harvard Medical School, Boston, Massachusetts, United States of America

Sibgat Choudhury

Contributed equally to this work with: Reo Maruyama, Sibgat Choudhury

Affiliations Departments of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts, United States of America, Department of Medicine, Harvard Medical School, Boston, Massachusetts, United States of America

Adam Kowalczyk

Affiliations NICTA Victoria Research Laboratory, The University of Melbourne, Melbourne, Victoria, Australia, Department of Electrical and Electronic Engineering, The University of Melbourne, Melbourne, Victoria, Australia

Marina Bessarabova

Affiliation Thomson Reuters, Healthcare and Science, Encinitas, California, United States of America

Bryan Beresford-Smith

Affiliations NICTA Victoria Research Laboratory, The University of Melbourne, Melbourne, Victoria, Australia, Department of Electrical and Electronic Engineering, The University of Melbourne, Melbourne, Victoria, Australia

Thomas Conway

Affiliations Department of Electrical and Electronic Engineering, The University of Melbourne, Melbourne, Victoria, Australia, Department of Computer Science and Software Engineering, The University of Melbourne, Melbourne, Victoria, Australia

Antony Kaspi

Affiliation Bioinformatics and System Integration, Baker IDI Heart and Diabetes Institute, Melbourne, Victoria, Australia

Zhenhua Wu

Affiliations Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, Harvard School of Public Health, Boston, Massachusetts, United States of America

Tatiana Nikolskaya

Affiliation Thomson Reuters, Healthcare and Science, Encinitas, California, United States of America

Vanessa F. Merino

Affiliation Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America

Pang-Kuo Lo

Affiliation Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America

X. Shirley Liu

Affiliations Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, Harvard School of Public Health, Boston, Massachusetts, United States of America

Yuri Nikolsky

Affiliation Thomson Reuters, Healthcare and Science, Encinitas, California, United States of America

Saraswati Sukumar

Affiliation Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America

Izhak Haviv

Affiliations Bioinformatics and System Integration, Baker IDI Heart and Diabetes Institute, Melbourne, Victoria, Australia, Department of Biochemistry, The University of Melbourne, Melbourne, Victoria, Australia, Metastasis Research Lab, Peter MacCallum Cancer Centre, Melbourne, Victoria, Australia

Kornelia Polyak

Kornelia_Polyak@dfci.harvard.edu

Affiliations Departments of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts, United States of America, Department of Medicine, Harvard Medical School, Boston, Massachusetts, United States of America, Harvard Stem Cell Institute, Cambridge, Massachusetts, United States of America

Competing Interests

KP receives research support from Novartis Oncology and is a consultant to Novartis Oncology. KP also serves on the Scientific Advisory Board of Metamark Genetics, Inc. and Theracrine, Inc. and holds AVEO Pharmaceuticals, Inc. stocks. TN and YN are founders and employees of GeneGo Inc.

Author Contributions

Conceived and designed the experiments: RM SC KP. Performed the experiments: RM SC. Analyzed the data: RM SC AK MB BBS TC AK ZW XSL YN IH KP. Contributed reagents/materials/analysis tools: AK MB BBS TC AK ZW TN VFM PKL XSL YN SS IH. Wrote the paper: RM SC AK MB BBS TC AK ZW XSL YN IH KP.