About the Authors
- Christopher A. Desjardins
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Mia D. Champion
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Current address: The Translational Genomic Research Institute, Phoenix, Arizona, United States of America
Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Jason W. Holder
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Affiliations Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America, Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
- Anna Muszewska
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Affiliation Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warszawa, Poland
- Jonathan Goldberg
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Alexandre M. Bailão
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Affiliation Laboratório de Biologia Molecular, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, Brazil
- Marcelo Macedo Brigido
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Affiliation Instituto de Ciências Biológicas, Universidade de Brasília, Brasília, Brazil
- Márcia Eliana da Silva Ferreira
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Affiliation Faculdade de Ciências Farmacêuticas de Ribeirão Preto Universidade de São Paulo, Ribeirão Preto, Brazil
- Ana Maria Garcia
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Affiliation Unidad de Biología Celular y Molecular, Corporación para Investigaciones Biológicas, Medellín, Colombia
- Marcin Grynberg
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Affiliation Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warszawa, Poland
- Sharvari Gujja
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- David I. Heiman
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Matthew R. Henn
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Chinnappa D. Kodira
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Current address: 454 Life Sciences, Roche Group, Branford, Connecticut, United States of America
Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Henry León-Narváez
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Affiliation Centro de Microbiología y Biología Celular, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela
- Larissa V. G. Longo
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Affiliation Departamento de Microbiologia, Imunologia, e Parasitologia, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, Brazil
- Li-Jun Ma
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Current address: Plant Soil and Insect Sciences, University of Massachusetts, Amherst, Massachusetts, United States of America
Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Iran Malavazi
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Current address: Departamento de Genética e Evolução, Centro de Ciências Biológicas e da Saúde (CCBS), Universidade Federal de São Carlos (UFSCar), São Carlos, Brazil
Affiliation Faculdade de Ciências Farmacêuticas de Ribeirão Preto Universidade de São Paulo, Ribeirão Preto, Brazil
- Alisson L. Matsuo
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Affiliation Departamento de Microbiologia, Imunologia, e Parasitologia, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, Brazil
- Flavia V. Morais
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Affiliations Departamento de Microbiologia, Imunologia, e Parasitologia, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, Brazil, Instituto de Pesquisa y Desenvolvimento, Universidade do Vale do Paraíba, São José dos Campos, Brazil
- Maristela Pereira
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Affiliation Laboratório de Biologia Molecular, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, Brazil
- Sabrina Rodríguez-Brito
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Affiliation Centro de Microbiología y Biología Celular, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela
- Sharadha Sakthikumar
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Silvia M. Salem-Izacc
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Affiliation Laboratório de Biologia Molecular, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, Brazil
- Sean M. Sykes
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Marcus Melo Teixeira
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Affiliation Instituto de Ciências Biológicas, Universidade de Brasília, Brasília, Brazil
- Milene C. Vallejo
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Affiliation Departamento de Microbiologia, Imunologia, e Parasitologia, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, Brazil
- Maria Emília Machado Telles Walter
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Affiliation Instituto de Ciências Exatas, Universidade de Brasília, Brasília, Brazil
- Chandri Yandava
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Sarah Young
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Qiandong Zeng
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Jeremy Zucker
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Maria Sueli Felipe
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Affiliation Instituto de Ciências Biológicas, Universidade de Brasília, Brasília, Brazil
- Gustavo H. Goldman
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Affiliations Faculdade de Ciências Farmacêuticas de Ribeirão Preto Universidade de São Paulo, Ribeirão Preto, Brazil, Laboratório Nacional de Ciência e Tecnologia do Bioetanol – CTBE, São Paulo, Brazil
- Brian J. Haas
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Juan G. McEwen
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Affiliations Unidad de Biología Celular y Molecular, Corporación para Investigaciones Biológicas, Medellín, Colombia, Facultad de Medicina, Universidad de Antioquia, Medellín, Colombia
- Gustavo Nino-Vega
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Affiliation Centro de Microbiología y Biología Celular, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela
- Rosana Puccia
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Affiliation Departamento de Microbiologia, Imunologia, e Parasitologia, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, Brazil
- Gioconda San-Blas
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Affiliation Centro de Microbiología y Biología Celular, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela
- Celia Maria de Almeida Soares
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Affiliation Laboratório de Biologia Molecular, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, Brazil
- Bruce W. Birren
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Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Christina A. Cuomo
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* E-mail: cuomo@broadinstitute.org
Affiliation Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
Competing Interests
The authors have declared that no competing interests exist.
Author Contributions
Conceived and designed the experiments: CAD MRH L-JM MSF GHG JGM GN-V RP GS-B CMdAS BWB CAC. Performed the experiments: MSF FVM JWH. Analyzed the data: CAD MDC JWH AM JG AMB MEdSF MG SG DIH CDK HL-N LVGL IM ALM MP SR-B SS SMS-I SMS MMT MCV SY CY QZ JZ MSF GHG BJH CMdAS CAC. Contributed reagents/materials/analysis tools: MSF FVM MMB MEMTW JGM AMG BJH. Wrote the paper: CAD MDC MSF GHG JMM GN-V RP GS-B CMdAS CAC. Contributed to the white paper for these genomes: L-JM MSF GHG MRH JGM GN-V RP GS-B BWB. Managed the genome sequencing: L-JM MRH. Prepared genomic DNA for Pb01: MSF. Prepared genomic DNA for Pb03 and Pb18: FVM. Generated genome assemblies: DIH SMS SY. Aligned Pb18 to the optical map: DIH. Annotated the nuclear genomes: CDK QZ CY BJH. Annotated the mitochondrial genomes: SG MDC QZ. Provided ESTs: MMB MEMTW JGM AMG. Aligned genomes: MDC BJH CAC. Identified SNPs: SS. Identified transposons: AM MG. Analyzed proteases: CAD RP ALM MCV LVGL. Analyzed genes involved in mating and meiosis: CAC MDC MMT MSF. Analyzed secondary metabolism genes: MEdSF IM GHG MDC CAC. Analyzed transporters, secreted proteins, and drug targets: MDC AMB CMdAS SMS-I MP. Assayed growth of U. reesii on carbohydrates: JWH. Analyzed enzymatic pathways: JZ CAD MDC. Analyzed protein kinases: JG. Analyzed genes related to cell wall synthesis: SR-B HL-N GN-V GS-B.