Table S2. List of PCR products with multiple hits within the genome
PCR product	homologous hit;heterologous hit
HP0227	self: 1931 bp at 235110-237040;identity:1.000 over 1931bp at 1400944-1402874
HP0316	self: 387 bp at 330856-331242;identity:0.886 over 370bp at 946604-946966
HP0379	self: 1272 bp at 388838-390109;identity:0.979 over 1139bp at 696957-698089
HP0413	self: 801 bp at 426035-426835;identity:0.996 over 798bp at 1069130-1069926
HP0414	self: 411 bp at 426879-427289;identity:1.000 over 411bp at 1069970-1070380
HP0423	self: 860 bp at 438272-439131;identity:1.000 over 860bp at 1483012-1483871
HP0424	self: 1793 bp at 439301-441093;identity:1.000 over 1793bp at 1481050-1482842
HP0425	self: 1066 bp at 441302-442367;identity:0.997 over 1066bp at 1479775-1480840
HP0426	self: 1634 bp at 442517-444150;identity:1.000 over 1634bp at 1477992-1479625
HP0427	self: 291 bp at 444288-444578;identity:1.000 over 291bp at 1477564-1477854
HP0477	self: 842 bp at 499169-500010;identity:1.000 over 842bp at 987229-988070
HP0488	self: 1863 bp at 512810-514672;identity:1.000 over 1863bp at 1179391-1181253
HP0559	self: 89 bp at 594087-594175;identity:0.920 over 88bp at 1020503-1020587
HP0651	self: 1425 bp at 696665-698089;identity:0.979 over 1139bp at 388838-389976
HP0789	self: 104 bp at 845271-845374;identity:0.942 over 104bp at 899704-899806
HP0923	self: 1089 bp at 987077-988165;identity:0.999 over 1086bp at 499020-500105
HP0980	self: 178 bp at 1044611-1044788;identity:0.966 over 178bp at 267077-267254
HP1007	self: 1275 bp at 1068639-1069913;identity:0.995 over 1277bp at 425547-426822
HP1008	self: 362 bp at 1070016-1070377;identity:1.000 over 362bp at 426925-427286
HP1115	self: 507 bp at 1177855-1178361;identity:1.000 over 507bp at 515702-516208
HP1116	self: 1863 bp at 1179391-1181253;identity:1.000 over 1863bp at 512810-514672
HP1342	self: 1831 bp at 1400938-1402768;identity:1.000 over 1831bp at 235216-237046
HP1408	self: 290 bp at 1477574-1477863;identity:1.000 over 290bp at 444279-444568
HP1409	self: 1513 bp at 1477990-1479502;identity:1.000 over 1513bp at 442640-444152
HP1410	self: 1066 bp at 1479775-1480840;identity:0.997 over 1066bp at 441302-442367
HP1411	self: 1793 bp at 1481050-1482842;identity:1.000 over 1793bp at 439301-441093
HP1412	self: 887 bp at 1483012-1483898;identity:1.000 over 887bp at 438245-439131
JHP0814	self: 256 bp at 893970-894225;identity:0.996 over 256bp at 1158011-1158266
JHP0950	self: 658 bp at 1055227-1055884;identity:0.823 over 661bp at 1541555-1542211
JHP0958	self: 103 bp at 1064056-1064158;identity:1.000 over 103bp at 1436487-1436589
JHP0959	self: 607 bp at 1064265-1064871;identity:0.986 over 557bp at 1436696-1437252
JHP1306	self: 100 bp at 1436489-1436588;identity:1.000 over 100bp at 1064058-1064157
JHP1408	self: 634 bp at 1541556-1542189;identity:0.821 over 637bp at 1055228-1055860

NOTE: self indicates 26695 for PCR products beginning with "HP" and J99 for PCR products beginning
with "JHP". The information indicates the length and position of the homologous hit and of a 
heterologous hit within the same genome as determined by Fasta analysis.