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Table of Contents: January 2007

Reactive Animation simulation of thymocyte development viewed at two scales: zooming out and zooming in (see Efroni et al).

Editorials

Moving Education Forward

Fran Lewitter

Related Articles

  1. Moving Education Forward, Again!

Education Articles

Automated Querying of Genome Databases

Peter Schattner

Obituaries

In Remembrance: Reinhart Heinrich 1946–2006

Thomas Höfer

Research Articles

Computational Aspects of Feedback in Neural Circuits

Wolfgang Maass, Prashant Joshi, Eduardo D Sontag

Nitric Oxide Regulates Input Specificity of Long-Term Depression and Context Dependence of Cerebellar Learning

Hideaki Ogasawara, Tomokazu Doi, Kenji Doya, Mitsuo Kawato

A Phylogenomic Study of Human, Dog, and Mouse

Gina Cannarozzi, Adrian Schneider, Gaston Gonnet

Using Phylogeny to Improve Genome-Wide Distant Homology Recognition

Sanne Abeln, Carlo Teubner, Charlotte M Deane

Modeling HER2 Effects on Cell Behavior from Mass Spectrometry Phosphotyrosine Data

Neil Kumar, Alejandro Wolf-Yadlin, Forest M White, Douglas A Lauffenburger

Protein and DNA Sequence Determinants of Thermophilic Adaptation

Konstantin B Zeldovich, Igor N Berezovsky, Eugene I Shakhnovich

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster

Thomas A Down, Casey M Bergman, Jing Su, Tim J. P Hubbard

Identification of Functional Subclasses in the DJ-1 Superfamily Proteins

Ying Wei, Dagmar Ringe, Mark A Wilson, Mary Jo Ondrechen

Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope

Art F. Y Poon, Fraser I Lewis, Sergei L. Kosakovsky Pond, Simon D. W Frost

Emergent Dynamics of Thymocyte Development and Lineage Determination

Sol Efroni, David Harel, Irun R Cohen

Detecting Key Structural Features within Highly Recombined Genes

John E Wertz, Karen F McGregor, Debra E Bessen