function varargout = digital_cm(t,x,flag,ia,ib,ic,id) % Model automatically generated by Promot on 2009-11-14 17.7:36 % For simply simulating this function do the following: % % [t,x]=ode15s('digital_c',[0 100]); % % %persistent idx_A5c_sig_free idx_Ach_fd idx_Ach_fm idx_Agz_fd idx_Agz_fdi idx_Agz_fm idx_B5d_sig_free idx_Bci_fd idx_Bci_fm idx_Bh0_fd idx_Bh0_fdi idx_Bh0_fm idx_C5e_sig_free idx_Ccj_srna_free idx_D5f_sig_free idx_Dck_srna_free idx_F3m_pola idx_F3m_ra idx_F3m_ru idx_F3m_z idx_I9r_fd idx_I9r_fm idx_Ib2_fd idx_Ib2_fm idx_Ii6_fd idx_Ii6_fm idx_P4i_pol_free idx_P5e_o1fo2f idx_P5e_o1fo2t idx_P5e_o1to2f idx_P5e_o1to2t idx_P5e_polo1fo2f idx_P9b_o1fo2f idx_P9b_o1fo2t idx_P9b_o1to2f idx_P9b_o1to2t idx_P9b_polo1fo2f idx_P9k_o1f idx_P9k_o1t idx_P9k_polo1f idx_Pas_o1f idx_Pas_o1t idx_Pas_polo1f idx_Pe8_o1fo2f idx_Pe8_o1fo2t idx_Pe8_o1to2f idx_Pe8_o1to2t idx_Pe8_polo1fo2f idx_Pfe_o1f idx_Pfe_o1t idx_Pfe_polo1f idx_Pht_o1fo2f idx_Pht_o1fo2t idx_Pht_o1to2f idx_Pht_o1to2t idx_Pht_polo1fo2f idx_Plw_o1f idx_Plw_o1t idx_Plw_polo1t idx_Pmw_ppol idx_Pmw_p_free idx_Pn6_o1fo2f idx_Pn6_o1fo2t idx_Pn6_o1to2f idx_Pn6_o1to2t idx_Pn6_polo1fo2f idx_Pnd_o1fo2f idx_Pnd_o1fo2t idx_Pnd_o1to2f idx_Pnd_o1to2t idx_Pnd_polo1fo2f idx_Prq_o1f idx_Prq_o1t idx_Prq_polo1t idx_Ps2_ppol idx_Ps2_p_free idx_Ps3_o1fo2f idx_Ps3_o1fo2t idx_Ps3_o1to2f idx_Ps3_o1to2t idx_Ps3_polo1fo2f idx_Psq_ppol idx_Psq_p_free idx_Pxw_ppol idx_Pxw_p_free idx_Pzb_o1fo2f idx_Pzb_o1fo2t idx_Pzb_o1to2f idx_Pzb_o1to2t idx_Pzb_polo1fo2f idx_R0n_b1fb2f idx_R0n_b1fb2n idx_R0n_b1nb2f idx_R0n_b1nb2n idx_R0n_polb idx_R0n_rb1nb2n idx_R35_b1f idx_R35_b1n idx_R35_polb idx_R35_rb1n idx_R45_b_free idx_R45_polb idx_R45_rb idx_R52_b_free idx_R52_polb idx_R52_rb idx_R56_b_free idx_R56_polb idx_R56_rb idx_R67_b1fb2f idx_R67_b1fb2n idx_R67_b1nb2f idx_R67_b1nb2n idx_R67_polb idx_R67_rb1nb2n idx_R6h_b1fb2f idx_R6h_b1fb2n idx_R6h_b1nb2f idx_R6h_b1nb2n idx_R6h_polb idx_R6h_rb1nb2n idx_Raw_b_free idx_Raw_polb idx_Raw_rb idx_Rc2_b1fb2f idx_Rc2_b1fb2n idx_Rc2_b1nb2f idx_Rc2_b1nb2n idx_Rc2_polb idx_Rc2_rb1nb2n idx_Rcl_b1fb2f idx_Rcl_b1fb2n idx_Rcl_b1nb2f idx_Rcl_b1nb2n idx_Rcl_polb idx_Rcl_rb1nb2n idx_Rdk_b1fb2f idx_Rdk_b1fb2n idx_Rdk_b1nb2f idx_Rdk_b1nb2n idx_Rdk_polb idx_Rdk_rb1nb2n idx_Rkb_b1fb2f idx_Rkb_b1fb2n idx_Rkb_b1nb2f idx_Rkb_b1nb2n idx_Rkb_polb idx_Rkb_rb1nb2n idx_Rqa_b1fb2f idx_Rqa_b1fb2n idx_Rqa_b1nb2f idx_Rqa_b1nb2n idx_Rqa_polb idx_Rqa_rb1nb2n idx_Rxb_b1f idx_Rxb_b1n idx_Rxb_polb idx_Rxb_rb1n idx_Rxm_r_free idx_Ryb_b_free idx_Ryb_polb idx_Ryb_rb idx_S0a_sig_free idx_S1z_sig_free idx_S2y_pols idx_S42_sig_free idx_Sjg_sig_free idx_Sq7_sig_free idx_Sri_sig_free idx_Ssm_sig_free idx_Sug_sig_free idx_Swe_sig_free idx_Sx4_pols idx_Sxb_sig_free idx_Sy7_sig_free idx_T10_pola idx_T10_ra idx_T10_ru idx_T16_polt idx_T23_polt idx_T34_pola idx_T34_ra idx_T34_ru idx_T4b_polt idx_T6r_polt idx_T6u_pola idx_T6u_ra idx_T6u_ru idx_T70_polt idx_T8u_polt idx_Tcl_polt idx_Tgt_pola idx_Tgt_ra idx_Tgt_ru idx_Tih_pola idx_Tih_ra idx_Tih_ru idx_Tj1_polt idx_Tj2_pola idx_Tj2_ra idx_Tj2_ru idx_Tm2_pola idx_Tm2_ra idx_Tm2_ru idx_Toq_polt idx_Tov_polt idx_Tow_pola idx_Tow_ra idx_Tow_ru idx_Tp8_pola idx_Tp8_ra idx_Tp8_ru idx_Trq_polt idx_Trw_pola idx_Trw_ra idx_Trw_ru idx_Tst_pola idx_Tst_ra idx_Tst_ru idx_Tu1_polt idx_Tuk_polt idx_Tuz_polt idx_Tvf_pola idx_Tvf_ra idx_Tvf_ru idx_Twd_pola idx_Twd_ra idx_Twd_ru idx_Txk_polt idx_Tyh_polt idx_Tyn_pola idx_Tyn_ra idx_Tyn_ru idx_Tzw_polt idx_Rxm_r_free_eq idx_P4i_pol_free_eq idx_Tow_ru_eq idx_Tow_ra_eq idx_Tow_pola_eq idx_Tov_polt_eq idx_Tuk_polt_eq idx_S0a_sig_free_eq idx_S2y_pols_eq idx_R35_rb1n_eq idx_R35_polb_eq idx_R35_b1n_eq idx_R35_b1f_eq idx_Prq_polo1t_eq idx_Prq_o1t_eq idx_Prq_o1f_eq idx_Psq_ppol_eq idx_Psq_p_free_eq idx_Tj2_ru_eq idx_Tj2_ra_eq idx_Tj2_pola_eq idx_Tj1_polt_eq idx_Toq_polt_eq idx_Sug_sig_free_eq idx_Sx4_pols_eq idx_Rxb_rb1n_eq idx_Rxb_polb_eq idx_Rxb_b1n_eq idx_Rxb_b1f_eq idx_Plw_polo1t_eq idx_Plw_o1t_eq idx_Plw_o1f_eq idx_Pmw_ppol_eq idx_Pmw_p_free_eq idx_Tyn_ru_eq idx_Tyn_ra_eq idx_Tyn_pola_eq idx_Trw_ru_eq idx_Trw_ra_eq idx_Trw_pola_eq idx_T4b_polt_eq idx_Txk_polt_eq idx_Raw_rb_eq idx_Raw_polb_eq idx_Raw_b_free_eq idx_R45_rb_eq idx_R45_polb_eq idx_R45_b_free_eq idx_Pfe_polo1f_eq idx_Pfe_o1t_eq idx_Pfe_o1f_eq idx_Pxw_ppol_eq idx_Pxw_p_free_eq idx_Tst_ru_eq idx_Tst_ra_eq idx_Tst_pola_eq idx_Tm2_ru_eq idx_Tm2_ra_eq idx_Tm2_pola_eq idx_Tyh_polt_eq idx_Trq_polt_eq idx_R52_rb_eq idx_R52_polb_eq idx_R52_b_free_eq idx_Ryb_rb_eq idx_Ryb_polb_eq idx_Ryb_b_free_eq idx_P9k_polo1f_eq idx_P9k_o1t_eq idx_P9k_o1f_eq idx_Ps2_ppol_eq idx_Ps2_p_free_eq idx_T6u_ru_eq idx_T6u_ra_eq idx_T6u_pola_eq idx_Tcl_polt_eq idx_R67_rb1nb2n_eq idx_R67_polb_eq idx_R67_b1nb2n_eq idx_R67_b1nb2f_eq idx_R67_b1fb2n_eq idx_R67_b1fb2f_eq idx_Pnd_polo1fo2f_eq idx_Pnd_o1to2t_eq idx_Pnd_o1to2f_eq idx_Pnd_o1fo2t_eq idx_Pnd_o1fo2f_eq idx_Tgt_ru_eq idx_Tgt_ra_eq idx_Tgt_pola_eq idx_T70_polt_eq idx_R0n_rb1nb2n_eq idx_R0n_polb_eq idx_R0n_b1nb2n_eq idx_R0n_b1nb2f_eq idx_R0n_b1fb2n_eq idx_R0n_b1fb2f_eq idx_Pht_polo1fo2f_eq idx_Pht_o1to2t_eq idx_Pht_o1to2f_eq idx_Pht_o1fo2t_eq idx_Pht_o1fo2f_eq idx_T34_ru_eq idx_T34_ra_eq idx_T34_pola_eq idx_T8u_polt_eq idx_S42_sig_free_eq idx_Rkb_rb1nb2n_eq idx_Rkb_polb_eq idx_Rkb_b1nb2n_eq idx_Rkb_b1nb2f_eq idx_Rkb_b1fb2n_eq idx_Rkb_b1fb2f_eq idx_Pn6_polo1fo2f_eq idx_Pn6_o1to2t_eq idx_Pn6_o1to2f_eq idx_Pn6_o1fo2t_eq idx_Pn6_o1fo2f_eq idx_Twd_ru_eq idx_Twd_ra_eq idx_Twd_pola_eq idx_T23_polt_eq idx_Sxb_sig_free_eq idx_Rdk_rb1nb2n_eq idx_Rdk_polb_eq idx_Rdk_b1nb2n_eq idx_Rdk_b1nb2f_eq idx_Rdk_b1fb2n_eq idx_Rdk_b1fb2f_eq idx_Ps3_polo1fo2f_eq idx_Ps3_o1to2t_eq idx_Ps3_o1to2f_eq idx_Ps3_o1fo2t_eq idx_Ps3_o1fo2f_eq idx_Tp8_ru_eq idx_Tp8_ra_eq idx_Tp8_pola_eq idx_Tuz_polt_eq idx_Sq7_sig_free_eq idx_Rcl_rb1nb2n_eq idx_Rcl_polb_eq idx_Rcl_b1nb2n_eq idx_Rcl_b1nb2f_eq idx_Rcl_b1fb2n_eq idx_Rcl_b1fb2f_eq idx_P9b_polo1fo2f_eq idx_P9b_o1to2t_eq idx_P9b_o1to2f_eq idx_P9b_o1fo2t_eq idx_P9b_o1fo2f_eq idx_Tih_ru_eq idx_Tih_ra_eq idx_Tih_pola_eq idx_Tzw_polt_eq idx_Sjg_sig_free_eq idx_Rqa_rb1nb2n_eq idx_Rqa_polb_eq idx_Rqa_b1nb2n_eq idx_Rqa_b1nb2f_eq idx_Rqa_b1fb2n_eq idx_Rqa_b1fb2f_eq idx_Pe8_polo1fo2f_eq idx_Pe8_o1to2t_eq idx_Pe8_o1to2f_eq idx_Pe8_o1fo2t_eq idx_Pe8_o1fo2f_eq idx_T10_ru_eq idx_T10_ra_eq idx_T10_pola_eq idx_T6r_polt_eq idx_S1z_sig_free_eq idx_Sy7_sig_free_eq idx_Rc2_rb1nb2n_eq idx_Rc2_polb_eq idx_Rc2_b1nb2n_eq idx_Rc2_b1nb2f_eq idx_Rc2_b1fb2n_eq idx_Rc2_b1fb2f_eq idx_Pzb_polo1fo2f_eq idx_Pzb_o1to2t_eq idx_Pzb_o1to2f_eq idx_Pzb_o1fo2t_eq idx_Pzb_o1fo2f_eq idx_Tvf_ru_eq idx_Tvf_ra_eq idx_Tvf_pola_eq idx_T16_polt_eq idx_Swe_sig_free_eq idx_Ssm_sig_free_eq idx_R6h_rb1nb2n_eq idx_R6h_polb_eq idx_R6h_b1nb2n_eq idx_R6h_b1nb2f_eq idx_R6h_b1fb2n_eq idx_R6h_b1fb2f_eq idx_P5e_polo1fo2f_eq idx_P5e_o1to2t_eq idx_P5e_o1to2f_eq idx_P5e_o1fo2t_eq idx_P5e_o1fo2f_eq idx_Tu1_polt_eq idx_Sri_sig_free_eq idx_R56_rb_eq idx_R56_polb_eq idx_R56_b_free_eq idx_Pas_polo1f_eq idx_Pas_o1t_eq idx_Pas_o1f_eq idx_F3m_ru_eq idx_F3m_ra_eq idx_F3m_product_eq idx_F3m_pola_eq idx_I9r_fm_eq idx_I9r_fd_eq idx_Ii6_fm_eq idx_Ii6_fd_eq idx_Ib2_fm_eq idx_Ib2_fd_eq idx_D5f_sig_free_eq idx_Dck_srna_free_eq idx_C5e_sig_free_eq idx_Ccj_srna_free_eq idx_Bh0_fm_eq idx_Bh0_fdi_eq idx_Bh0_fd_eq idx_B5d_sig_free_eq idx_Bci_fm_eq idx_Bci_fd_eq idx_Agz_fm_eq idx_Agz_fdi_eq idx_Agz_fd_eq idx_A5c_sig_free_eq idx_Ach_fm_eq idx_Ach_fd_eq Psq_k1 Psq_k_1 Psq_k2 R35_k_el R35_kd1 R35_kd2 R35_k_dr1 R35_theta1 R35_csi1 R35_k_lkr12 R35_k2r R35_k_1r R35_k1r Tow_k_el Tow_k_el_r Tow_zeta_r Tuk_zeta Prq_alpha1 Prq_beta1 Prq_n1 Prq_k_d12 Prq_k_d12p Prq_k1 Prq_k_1 Prq_k2 Prq_k11_lk S2y_k_el Tov_zeta S0a_k_s S0a_k_d Pmw_k1 Pmw_k_1 Pmw_k2 Rxb_k_el Rxb_kd1 Rxb_kd2 Rxb_k_dr1 Rxb_theta1 Rxb_csi1 Rxb_k_lkr12 Rxb_k2r Rxb_k_1r Rxb_k1r Tj2_k_el Tj2_k_el_r Tj2_zeta_r Toq_zeta Plw_alpha1 Plw_beta1 Plw_n1 Plw_k_d12 Plw_k_d12p Plw_k1 Plw_k_1 Plw_k2 Plw_k11_lk Sx4_k_el Tj1_zeta Sug_k_s Sug_k_d Pxw_k1 Pxw_k_1 Pxw_k2 R45_k_el R45_k_db R45_k_drb R45_k2r R45_k_1r R45_k1r Trw_k_el Trw_k_el_r Trw_zeta_r Txk_zeta Pfe_alpha1 Pfe_beta1 Pfe_n1 Pfe_k_d12 Pfe_k1 Pfe_k_1 Pfe_k2 Pfe_k12_lk Raw_k_el Raw_k_db Raw_k_drb Raw_k2r Raw_k_1r Raw_k1r Tyn_k_el Tyn_k_el_r Tyn_zeta_r T4b_zeta Ps2_k1 Ps2_k_1 Ps2_k2 Ryb_k_el Ryb_k_db Ryb_k_drb Ryb_k2r Ryb_k_1r Ryb_k1r Tm2_k_el Tm2_k_el_r Tm2_zeta_r Trq_zeta P9k_alpha1 P9k_beta1 P9k_n1 P9k_k_d12 P9k_k1 P9k_k_1 P9k_k2 P9k_k12_lk R52_k_el R52_k_db R52_k_drb R52_k2r R52_k_1r R52_k1r Tst_k_el Tst_k_el_r Tst_zeta_r Tyh_zeta Pnd_alpha1f Pnd_beta1f Pnd_alpha1t Pnd_beta1t Pnd_alpha2f Pnd_beta2f Pnd_alpha2t Pnd_beta2t Pnd_n1 Pnd_n2 Pnd_k_d13 Pnd_k_d14 Pnd_k_d22 Pnd_k_d24 Pnd_k1 Pnd_k_1 Pnd_k2 Pnd_k22_lk Pnd_k23_lk Pnd_k24_lk R67_k_el R67_kd1 R67_kd2 R67_kd3 R67_kd4 R67_k_dr1 R67_theta1n R67_csi1n R67_theta1f R67_csi1f R67_theta2n R67_csi2n R67_theta2f R67_csi2f R67_k_lkr22 R67_k_lkr23 R67_k_lkr24 R67_k2r R67_k_1r R67_k1r T6u_k_el T6u_k_el_r T6u_zeta_r Tcl_zeta Pht_alpha1f Pht_beta1f Pht_alpha1t Pht_beta1t Pht_alpha2f Pht_beta2f Pht_alpha2t Pht_beta2t Pht_n1 Pht_n2 Pht_k_d13 Pht_k_d14 Pht_k_d22 Pht_k_d24 Pht_k1 Pht_k_1 Pht_k2 Pht_k22_lk Pht_k23_lk Pht_k24_lk R0n_k_el R0n_kd1 R0n_kd2 R0n_kd3 R0n_kd4 R0n_k_dr1 R0n_theta1n R0n_csi1n R0n_theta1f R0n_csi1f R0n_theta2n R0n_csi2n R0n_theta2f R0n_csi2f R0n_k_lkr22 R0n_k_lkr23 R0n_k_lkr24 R0n_k2r R0n_k_1r R0n_k1r Tgt_k_el Tgt_k_el_r Tgt_zeta_r T70_zeta Pn6_alpha1f Pn6_beta1f Pn6_alpha1t Pn6_beta1t Pn6_alpha2f Pn6_beta2f Pn6_alpha2t Pn6_beta2t Pn6_n1 Pn6_n2 Pn6_k_d13 Pn6_k_d14 Pn6_k_d22 Pn6_k_d24 Pn6_k1 Pn6_k_1 Pn6_k2 Pn6_k22_lk Pn6_k23_lk Pn6_k24_lk Rkb_k_el Rkb_kd1 Rkb_kd2 Rkb_kd3 Rkb_kd4 Rkb_k_dr1 Rkb_theta1n Rkb_csi1n Rkb_theta1f Rkb_csi1f Rkb_theta2n Rkb_csi2n Rkb_theta2f Rkb_csi2f Rkb_k_lkr22 Rkb_k_lkr23 Rkb_k_lkr24 Rkb_k2r Rkb_k_1r Rkb_k1r T34_k_el T34_k_el_r T34_zeta_r T8u_zeta S42_k_s S42_k_d Ps3_alpha1f Ps3_beta1f Ps3_alpha1t Ps3_beta1t Ps3_alpha2f Ps3_beta2f Ps3_alpha2t Ps3_beta2t Ps3_n1 Ps3_n2 Ps3_k_d13 Ps3_k_d14 Ps3_k_d22 Ps3_k_d24 Ps3_k1 Ps3_k_1 Ps3_k2 Ps3_k22_lk Ps3_k23_lk Ps3_k24_lk Rdk_k_el Rdk_kd1 Rdk_kd2 Rdk_kd3 Rdk_kd4 Rdk_k_dr1 Rdk_theta1n Rdk_csi1n Rdk_theta1f Rdk_csi1f Rdk_theta2n Rdk_csi2n Rdk_theta2f Rdk_csi2f Rdk_k_lkr22 Rdk_k_lkr23 Rdk_k_lkr24 Rdk_k2r Rdk_k_1r Rdk_k1r Twd_k_el Twd_k_el_r Twd_zeta_r T23_zeta Sxb_k_s Sxb_k_d P9b_alpha1f P9b_beta1f P9b_alpha1t P9b_beta1t P9b_alpha2f P9b_beta2f P9b_alpha2t P9b_beta2t P9b_n1 P9b_n2 P9b_k_d13 P9b_k_d14 P9b_k_d22 P9b_k_d24 P9b_k1 P9b_k_1 P9b_k2 P9b_k22_lk P9b_k23_lk P9b_k24_lk Rcl_k_el Rcl_kd1 Rcl_kd2 Rcl_kd3 Rcl_kd4 Rcl_k_dr1 Rcl_theta1n Rcl_csi1n Rcl_theta1f Rcl_csi1f Rcl_theta2n Rcl_csi2n Rcl_theta2f Rcl_csi2f Rcl_k_lkr22 Rcl_k_lkr23 Rcl_k_lkr24 Rcl_k2r Rcl_k_1r Rcl_k1r Tp8_k_el Tp8_k_el_r Tp8_zeta_r Tuz_zeta Sq7_k_s Sq7_k_d Pe8_alpha1f Pe8_beta1f Pe8_alpha1t Pe8_beta1t Pe8_alpha2f Pe8_beta2f Pe8_alpha2t Pe8_beta2t Pe8_n1 Pe8_n2 Pe8_k_d13 Pe8_k_d14 Pe8_k_d22 Pe8_k_d24 Pe8_k1 Pe8_k_1 Pe8_k2 Pe8_k22_lk Pe8_k23_lk Pe8_k24_lk Rqa_k_el Rqa_kd1 Rqa_kd2 Rqa_kd3 Rqa_kd4 Rqa_k_dr1 Rqa_theta1n Rqa_csi1n Rqa_theta1f Rqa_csi1f Rqa_theta2n Rqa_csi2n Rqa_theta2f Rqa_csi2f Rqa_k_lkr22 Rqa_k_lkr23 Rqa_k_lkr24 Rqa_k2r Rqa_k_1r Rqa_k1r Tih_k_el Tih_k_el_r Tih_zeta_r Tzw_zeta Sjg_k_s Sjg_k_d Pzb_alpha1f Pzb_beta1f Pzb_alpha1t Pzb_beta1t Pzb_alpha2f Pzb_beta2f Pzb_alpha2t Pzb_beta2t Pzb_n1 Pzb_n2 Pzb_k_d13 Pzb_k_d14 Pzb_k_d22 Pzb_k_d24 Pzb_k1 Pzb_k_1 Pzb_k2 Pzb_k22_lk Pzb_k23_lk Pzb_k24_lk Rc2_k_el Rc2_kd1 Rc2_kd2 Rc2_kd3 Rc2_kd4 Rc2_k_dr1 Rc2_theta1n Rc2_csi1n Rc2_theta1f Rc2_csi1f Rc2_theta2n Rc2_csi2n Rc2_theta2f Rc2_csi2f Rc2_k_lkr22 Rc2_k_lkr23 Rc2_k_lkr24 Rc2_k2r Rc2_k_1r Rc2_k1r T10_k_el T10_k_el_r T10_zeta_r T6r_zeta Sy7_k_s Sy7_k_d S1z_k_s S1z_k_d P5e_alpha1f P5e_beta1f P5e_alpha1t P5e_beta1t P5e_alpha2f P5e_beta2f P5e_alpha2t P5e_beta2t P5e_n1 P5e_n2 P5e_k_d13 P5e_k_d14 P5e_k_d22 P5e_k_d24 P5e_k1 P5e_k_1 P5e_k2 P5e_k22_lk P5e_k23_lk P5e_k24_lk R6h_k_el R6h_kd1 R6h_kd2 R6h_kd3 R6h_kd4 R6h_k_dr1 R6h_theta1n R6h_csi1n R6h_theta1f R6h_csi1f R6h_theta2n R6h_csi2n R6h_theta2f R6h_csi2f R6h_k_lkr22 R6h_k_lkr23 R6h_k_lkr24 R6h_k2r R6h_k_1r R6h_k1r Tvf_k_el Tvf_k_el_r Tvf_zeta_r T16_zeta Ssm_k_s Ssm_k_d Swe_k_s Swe_k_d Pas_alpha1 Pas_beta1 Pas_n1 Pas_k_d12 Pas_k1 Pas_k_1 Pas_k2 Pas_k12_lk R56_k_el R56_k_db R56_k_drb R56_k2r R56_k_1r R56_k1r F3m_k_el F3m_k_el_r F3m_k_d F3m_zeta_r Tu1_zeta Sri_k_s Sri_k_d I9r_k_dm I9r_k_dd I9r_delta I9r_epsilon Ii6_k_dm Ii6_k_dd Ii6_delta Ii6_epsilon Ib2_k_dm Ib2_k_dd Ib2_delta Ib2_epsilon D5f_k_s D5f_k_d Dck_k_dk C5e_k_s C5e_k_d Ccj_k_dk Bh0_k_dm Bh0_k_dd Bh0_k_ddi Bh0_delta Bh0_epsilon Bh0_lambda Bh0_mu B5d_k_s B5d_k_d Bci_k_dm Bci_k_dd Bci_delta Bci_epsilon Agz_k_dm Agz_k_dd Agz_k_ddi Agz_delta Agz_epsilon Agz_lambda Agz_mu A5c_k_s A5c_k_d Ach_k_dm Ach_k_dd Ach_delta Ach_epsilon; %switch flag %case 'init' idx_A5c_sig_free=1; idx_Ach_fd=2; idx_Ach_fm=3; idx_Agz_fd=4; idx_Agz_fdi=5; idx_Agz_fm=6; idx_B5d_sig_free=7; idx_Bci_fd=8; idx_Bci_fm=9; idx_Bh0_fd=10; idx_Bh0_fdi=11; idx_Bh0_fm=12; idx_C5e_sig_free=13; idx_Ccj_srna_free=14; idx_D5f_sig_free=15; idx_Dck_srna_free=16; idx_F3m_pola=17; idx_F3m_ra=18; idx_F3m_ru=19; idx_F3m_z=20; %%% circuit output: look at product_eq idx_I9r_fd=21; idx_I9r_fm=22; idx_Ib2_fd=23; idx_Ib2_fm=24; idx_Ii6_fd=25; idx_Ii6_fm=26; idx_P4i_pol_free=27; idx_P5e_o1fo2f=28; idx_P5e_o1fo2t=29; idx_P5e_o1to2f=30; idx_P5e_o1to2t=31; idx_P5e_polo1fo2f=32; idx_P9b_o1fo2f=33; idx_P9b_o1fo2t=34; idx_P9b_o1to2f=35; idx_P9b_o1to2t=36; idx_P9b_polo1fo2f=37; idx_P9k_o1f=38; idx_P9k_o1t=39; idx_P9k_polo1f=40; idx_Pas_o1f=41; idx_Pas_o1t=42; idx_Pas_polo1f=43; idx_Pe8_o1fo2f=44; idx_Pe8_o1fo2t=45; idx_Pe8_o1to2f=46; idx_Pe8_o1to2t=47; idx_Pe8_polo1fo2f=48; idx_Pfe_o1f=49; idx_Pfe_o1t=50; idx_Pfe_polo1f=51; idx_Pht_o1fo2f=52; idx_Pht_o1fo2t=53; idx_Pht_o1to2f=54; idx_Pht_o1to2t=55; idx_Pht_polo1fo2f=56; idx_Plw_o1f=57; idx_Plw_o1t=58; idx_Plw_polo1t=59; idx_Pmw_ppol=60; idx_Pmw_p_free=61; idx_Pn6_o1fo2f=62; idx_Pn6_o1fo2t=63; idx_Pn6_o1to2f=64; idx_Pn6_o1to2t=65; idx_Pn6_polo1fo2f=66; idx_Pnd_o1fo2f=67; idx_Pnd_o1fo2t=68; idx_Pnd_o1to2f=69; idx_Pnd_o1to2t=70; idx_Pnd_polo1fo2f=71; idx_Prq_o1f=72; idx_Prq_o1t=73; idx_Prq_polo1t=74; idx_Ps2_ppol=75; idx_Ps2_p_free=76; idx_Ps3_o1fo2f=77; idx_Ps3_o1fo2t=78; idx_Ps3_o1to2f=79; idx_Ps3_o1to2t=80; idx_Ps3_polo1fo2f=81; idx_Psq_ppol=82; idx_Psq_p_free=83; idx_Pxw_ppol=84; idx_Pxw_p_free=85; idx_Pzb_o1fo2f=86; idx_Pzb_o1fo2t=87; idx_Pzb_o1to2f=88; idx_Pzb_o1to2t=89; idx_Pzb_polo1fo2f=90; idx_R0n_b1fb2f=91; idx_R0n_b1fb2n=92; idx_R0n_b1nb2f=93; idx_R0n_b1nb2n=94; idx_R0n_polb=95; idx_R0n_rb1nb2n=96; idx_R35_b1f=97; idx_R35_b1n=98; idx_R35_polb=99; idx_R35_rb1n=100; idx_R45_b_free=101; idx_R45_polb=102; idx_R45_rb=103; idx_R52_b_free=104; idx_R52_polb=105; idx_R52_rb=106; idx_R56_b_free=107; idx_R56_polb=108; idx_R56_rb=109; idx_R67_b1fb2f=110; idx_R67_b1fb2n=111; idx_R67_b1nb2f=112; idx_R67_b1nb2n=113; idx_R67_polb=114; idx_R67_rb1nb2n=115; idx_R6h_b1fb2f=116; idx_R6h_b1fb2n=117; idx_R6h_b1nb2f=118; idx_R6h_b1nb2n=119; idx_R6h_polb=120; idx_R6h_rb1nb2n=121; idx_Raw_b_free=122; idx_Raw_polb=123; idx_Raw_rb=124; idx_Rc2_b1fb2f=125; idx_Rc2_b1fb2n=126; idx_Rc2_b1nb2f=127; idx_Rc2_b1nb2n=128; idx_Rc2_polb=129; idx_Rc2_rb1nb2n=130; idx_Rcl_b1fb2f=131; idx_Rcl_b1fb2n=132; idx_Rcl_b1nb2f=133; idx_Rcl_b1nb2n=134; idx_Rcl_polb=135; idx_Rcl_rb1nb2n=136; idx_Rdk_b1fb2f=137; idx_Rdk_b1fb2n=138; idx_Rdk_b1nb2f=139; idx_Rdk_b1nb2n=140; idx_Rdk_polb=141; idx_Rdk_rb1nb2n=142; idx_Rkb_b1fb2f=143; idx_Rkb_b1fb2n=144; idx_Rkb_b1nb2f=145; idx_Rkb_b1nb2n=146; idx_Rkb_polb=147; idx_Rkb_rb1nb2n=148; idx_Rqa_b1fb2f=149; idx_Rqa_b1fb2n=150; idx_Rqa_b1nb2f=151; idx_Rqa_b1nb2n=152; idx_Rqa_polb=153; idx_Rqa_rb1nb2n=154; idx_Rxb_b1f=155; idx_Rxb_b1n=156; idx_Rxb_polb=157; idx_Rxb_rb1n=158; idx_Rxm_r_free=159; idx_Ryb_b_free=160; idx_Ryb_polb=161; idx_Ryb_rb=162; idx_S0a_sig_free=163; idx_S1z_sig_free=164; idx_S2y_pols=165; idx_S42_sig_free=166; idx_Sjg_sig_free=167; idx_Sq7_sig_free=168; idx_Sri_sig_free=169; idx_Ssm_sig_free=170; idx_Sug_sig_free=171; idx_Swe_sig_free=172; idx_Sx4_pols=173; idx_Sxb_sig_free=174; idx_Sy7_sig_free=175; idx_T10_pola=176; idx_T10_ra=177; idx_T10_ru=178; idx_T16_polt=179; idx_T23_polt=180; idx_T34_pola=181; idx_T34_ra=182; idx_T34_ru=183; idx_T4b_polt=184; idx_T6r_polt=185; idx_T6u_pola=186; idx_T6u_ra=187; idx_T6u_ru=188; idx_T70_polt=189; idx_T8u_polt=190; idx_Tcl_polt=191; idx_Tgt_pola=192; idx_Tgt_ra=193; idx_Tgt_ru=194; idx_Tih_pola=195; idx_Tih_ra=196; idx_Tih_ru=197; idx_Tj1_polt=198; idx_Tj2_pola=199; idx_Tj2_ra=200; idx_Tj2_ru=201; idx_Tm2_pola=202; idx_Tm2_ra=203; idx_Tm2_ru=204; idx_Toq_polt=205; idx_Tov_polt=206; idx_Tow_pola=207; idx_Tow_ra=208; idx_Tow_ru=209; idx_Tp8_pola=210; idx_Tp8_ra=211; idx_Tp8_ru=212; idx_Trq_polt=213; idx_Trw_pola=214; idx_Trw_ra=215; idx_Trw_ru=216; idx_Tst_pola=217; idx_Tst_ra=218; idx_Tst_ru=219; idx_Tu1_polt=220; idx_Tuk_polt=221; idx_Tuz_polt=222; idx_Tvf_pola=223; idx_Tvf_ra=224; idx_Tvf_ru=225; idx_Twd_pola=226; idx_Twd_ra=227; idx_Twd_ru=228; idx_Txk_polt=229; idx_Tyh_polt=230; idx_Tyn_pola=231; idx_Tyn_ra=232; idx_Tyn_ru=233; idx_Tzw_polt=234; idx_Rxm_r_free_eq=234; idx_P4i_pol_free_eq=233; idx_Tow_ru_eq=232; idx_Tow_ra_eq=231; idx_Tow_pola_eq=230; idx_Tov_polt_eq=229; idx_Tuk_polt_eq=228; idx_S0a_sig_free_eq=227; idx_S2y_pols_eq=226; idx_R35_rb1n_eq=225; idx_R35_polb_eq=224; idx_R35_b1n_eq=223; idx_R35_b1f_eq=222; idx_Prq_polo1t_eq=221; idx_Prq_o1t_eq=220; idx_Prq_o1f_eq=219; idx_Psq_ppol_eq=218; idx_Psq_p_free_eq=217; idx_Tj2_ru_eq=216; idx_Tj2_ra_eq=215; idx_Tj2_pola_eq=214; idx_Tj1_polt_eq=213; idx_Toq_polt_eq=212; idx_Sug_sig_free_eq=211; idx_Sx4_pols_eq=210; idx_Rxb_rb1n_eq=209; idx_Rxb_polb_eq=208; idx_Rxb_b1n_eq=207; idx_Rxb_b1f_eq=206; idx_Plw_polo1t_eq=205; idx_Plw_o1t_eq=204; idx_Plw_o1f_eq=203; idx_Pmw_ppol_eq=202; idx_Pmw_p_free_eq=201; idx_Tyn_ru_eq=200; idx_Tyn_ra_eq=199; idx_Tyn_pola_eq=198; idx_Trw_ru_eq=197; idx_Trw_ra_eq=196; idx_Trw_pola_eq=195; idx_T4b_polt_eq=194; idx_Txk_polt_eq=193; idx_Raw_rb_eq=192; idx_Raw_polb_eq=191; idx_Raw_b_free_eq=190; idx_R45_rb_eq=189; idx_R45_polb_eq=188; idx_R45_b_free_eq=187; idx_Pfe_polo1f_eq=186; idx_Pfe_o1t_eq=185; idx_Pfe_o1f_eq=184; idx_Pxw_ppol_eq=183; idx_Pxw_p_free_eq=182; idx_Tst_ru_eq=181; idx_Tst_ra_eq=180; idx_Tst_pola_eq=179; idx_Tm2_ru_eq=178; idx_Tm2_ra_eq=177; idx_Tm2_pola_eq=176; idx_Tyh_polt_eq=175; idx_Trq_polt_eq=174; idx_R52_rb_eq=173; idx_R52_polb_eq=172; idx_R52_b_free_eq=171; idx_Ryb_rb_eq=170; idx_Ryb_polb_eq=169; idx_Ryb_b_free_eq=168; idx_P9k_polo1f_eq=167; idx_P9k_o1t_eq=166; idx_P9k_o1f_eq=165; idx_Ps2_ppol_eq=164; idx_Ps2_p_free_eq=163; idx_T6u_ru_eq=162; idx_T6u_ra_eq=161; idx_T6u_pola_eq=160; idx_Tcl_polt_eq=159; idx_R67_rb1nb2n_eq=158; idx_R67_polb_eq=157; idx_R67_b1nb2n_eq=156; idx_R67_b1nb2f_eq=155; idx_R67_b1fb2n_eq=154; idx_R67_b1fb2f_eq=153; idx_Pnd_polo1fo2f_eq=152; idx_Pnd_o1to2t_eq=151; idx_Pnd_o1to2f_eq=150; idx_Pnd_o1fo2t_eq=149; idx_Pnd_o1fo2f_eq=148; idx_Tgt_ru_eq=147; idx_Tgt_ra_eq=146; idx_Tgt_pola_eq=145; idx_T70_polt_eq=144; idx_R0n_rb1nb2n_eq=143; idx_R0n_polb_eq=142; idx_R0n_b1nb2n_eq=141; idx_R0n_b1nb2f_eq=140; idx_R0n_b1fb2n_eq=139; idx_R0n_b1fb2f_eq=138; idx_Pht_polo1fo2f_eq=137; idx_Pht_o1to2t_eq=136; idx_Pht_o1to2f_eq=135; idx_Pht_o1fo2t_eq=134; idx_Pht_o1fo2f_eq=133; idx_T34_ru_eq=132; idx_T34_ra_eq=131; idx_T34_pola_eq=130; idx_T8u_polt_eq=129; idx_S42_sig_free_eq=128; idx_Rkb_rb1nb2n_eq=127; idx_Rkb_polb_eq=126; idx_Rkb_b1nb2n_eq=125; idx_Rkb_b1nb2f_eq=124; idx_Rkb_b1fb2n_eq=123; idx_Rkb_b1fb2f_eq=122; idx_Pn6_polo1fo2f_eq=121; idx_Pn6_o1to2t_eq=120; idx_Pn6_o1to2f_eq=119; idx_Pn6_o1fo2t_eq=118; idx_Pn6_o1fo2f_eq=117; idx_Twd_ru_eq=116; idx_Twd_ra_eq=115; idx_Twd_pola_eq=114; idx_T23_polt_eq=113; idx_Sxb_sig_free_eq=112; idx_Rdk_rb1nb2n_eq=111; idx_Rdk_polb_eq=110; idx_Rdk_b1nb2n_eq=109; idx_Rdk_b1nb2f_eq=108; idx_Rdk_b1fb2n_eq=107; idx_Rdk_b1fb2f_eq=106; idx_Ps3_polo1fo2f_eq=105; idx_Ps3_o1to2t_eq=104; idx_Ps3_o1to2f_eq=103; idx_Ps3_o1fo2t_eq=102; idx_Ps3_o1fo2f_eq=101; idx_Tp8_ru_eq=100; idx_Tp8_ra_eq=99; idx_Tp8_pola_eq=98; idx_Tuz_polt_eq=97; idx_Sq7_sig_free_eq=96; idx_Rcl_rb1nb2n_eq=95; idx_Rcl_polb_eq=94; idx_Rcl_b1nb2n_eq=93; idx_Rcl_b1nb2f_eq=92; idx_Rcl_b1fb2n_eq=91; idx_Rcl_b1fb2f_eq=90; idx_P9b_polo1fo2f_eq=89; idx_P9b_o1to2t_eq=88; idx_P9b_o1to2f_eq=87; idx_P9b_o1fo2t_eq=86; idx_P9b_o1fo2f_eq=85; idx_Tih_ru_eq=84; idx_Tih_ra_eq=83; idx_Tih_pola_eq=82; idx_Tzw_polt_eq=81; idx_Sjg_sig_free_eq=80; idx_Rqa_rb1nb2n_eq=79; idx_Rqa_polb_eq=78; idx_Rqa_b1nb2n_eq=77; idx_Rqa_b1nb2f_eq=76; idx_Rqa_b1fb2n_eq=75; idx_Rqa_b1fb2f_eq=74; idx_Pe8_polo1fo2f_eq=73; idx_Pe8_o1to2t_eq=72; idx_Pe8_o1to2f_eq=71; idx_Pe8_o1fo2t_eq=70; idx_Pe8_o1fo2f_eq=69; idx_T10_ru_eq=68; idx_T10_ra_eq=67; idx_T10_pola_eq=66; idx_T6r_polt_eq=65; idx_S1z_sig_free_eq=64; idx_Sy7_sig_free_eq=63; idx_Rc2_rb1nb2n_eq=62; idx_Rc2_polb_eq=61; idx_Rc2_b1nb2n_eq=60; idx_Rc2_b1nb2f_eq=59; idx_Rc2_b1fb2n_eq=58; idx_Rc2_b1fb2f_eq=57; idx_Pzb_polo1fo2f_eq=56; idx_Pzb_o1to2t_eq=55; idx_Pzb_o1to2f_eq=54; idx_Pzb_o1fo2t_eq=53; idx_Pzb_o1fo2f_eq=52; idx_Tvf_ru_eq=51; idx_Tvf_ra_eq=50; idx_Tvf_pola_eq=49; idx_T16_polt_eq=48; idx_Swe_sig_free_eq=47; idx_Ssm_sig_free_eq=46; idx_R6h_rb1nb2n_eq=45; idx_R6h_polb_eq=44; idx_R6h_b1nb2n_eq=43; idx_R6h_b1nb2f_eq=42; idx_R6h_b1fb2n_eq=41; idx_R6h_b1fb2f_eq=40; idx_P5e_polo1fo2f_eq=39; idx_P5e_o1to2t_eq=38; idx_P5e_o1to2f_eq=37; idx_P5e_o1fo2t_eq=36; idx_P5e_o1fo2f_eq=35; idx_Tu1_polt_eq=34; idx_Sri_sig_free_eq=33; idx_R56_rb_eq=32; idx_R56_polb_eq=31; idx_R56_b_free_eq=30; idx_Pas_polo1f_eq=29; idx_Pas_o1t_eq=28; idx_Pas_o1f_eq=27; idx_F3m_ru_eq=26; idx_F3m_ra_eq=25; idx_F3m_product_eq=24; idx_F3m_pola_eq=23; idx_I9r_fm_eq=22; idx_I9r_fd_eq=21; idx_Ii6_fm_eq=20; idx_Ii6_fd_eq=19; idx_Ib2_fm_eq=18; idx_Ib2_fd_eq=17; idx_D5f_sig_free_eq=16; idx_Dck_srna_free_eq=15; idx_C5e_sig_free_eq=14; idx_Ccj_srna_free_eq=13; idx_Bh0_fm_eq=12; idx_Bh0_fdi_eq=11; idx_Bh0_fd_eq=10; idx_B5d_sig_free_eq=9; idx_Bci_fm_eq=8; idx_Bci_fd_eq=7; idx_Agz_fm_eq=6; idx_Agz_fdi_eq=5; idx_Agz_fd_eq=4; idx_A5c_sig_free_eq=3; idx_Ach_fm_eq=2; idx_Ach_fd_eq=1; % not3_ip3.p0not3pos.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Psq_k1 = 1000000.0d0; % not3_ip3.p0not3pos.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Psq_k_1 = 0.01d0; % not3_ip3.p0not3pos.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Psq_k2 = 0.5d0; % not3_ip3.rcnot.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate R35_k_el = 2; % not3_ip3.rcnot.kd1 (VARIABLE) [s ^ (-1)]: % b1n constant decay rate R35_kd1 = 0.0116d0; % not3_ip3.rcnot.kd2 (VARIABLE) [s ^ (-1)]: % b1f constant decay rate R35_kd2 = 0.0116d0; % not3_ip3.rcnot.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1n] constant decay rate R35_k_dr1 = 0.0116d0; % not3_ip3.rcnot.theta1 (VARIABLE) [(m*s) ^ (-1)]: % C1 + RBS association rate constant R35_theta1 = 1.0d+9; % not3_ip3.rcnot.csi1 (VARIABLE) [s ^ (-1)]: % C1 + RBS dissociation rate constant R35_csi1 = 0.01d0; % not3_ip3.rcnot.k_lkr12 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R35_k_lkr12 = 1.0d-5; % not3_ip3.rcnot.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency R35_k2r = 0.02d0; % not3_ip3.rcnot.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate R35_k_1r = 0.01d0; % not3_ip3.rcnot.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant R35_k1r = 1000000.0d0; % not3_ip3.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tow_k_el = 0.056d0; % not3_ip3.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tow_k_el_r = 0.049d0; % not3_ip3.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tow_zeta_r = 0.5d0; % not3_ip3.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Tuk_zeta = 31.25d0; % not3_ip3.paanot3pos_s.alpha1 (VARIABLE) [(s*m) ^ (-1)]: % Aa1 + o1f association constant Prq_alpha1 = 100000.0d0; % not3_ip3.paanot3pos_s.beta1 (VARIABLE) [s ^ (-1)]: % o1t dissociation rate Prq_beta1 = 0.01d0; % not3_ip3.paanot3pos_s.n1 (VARIABLE): % Number of signal molecules that bind to a TF Prq_n1 = 1; % not3_ip3.paanot3pos_s.k_d12 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Prq_k_d12 = 0.00116d0; % not3_ip3.paanot3pos_s.k_d12p (VARIABLE) [s ^ (-1)]: % k decay rate for polo1t Prq_k_d12p = 0.00116d0; % not3_ip3.paanot3pos_s.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Prq_k1 = 1000000.0d0; % not3_ip3.paanot3pos_s.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Prq_k_1 = 0.01d0; % not3_ip3.paanot3pos_s.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Prq_k2 = 1; % not3_ip3.paanot3pos_s.k11_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Prq_k11_lk = 5.0d-5; % not3_ip3.s0.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate S2y_k_el = 1; % not3_ip3.tes.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Tov_zeta = 31.25d0; % not3_ip3.sips_off_1.k_s (VARIABLE) [m/s]: % False production rate S0a_k_s = 0.0d0; % not3_ip3.sips_off_1.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant S0a_k_d = 0.0d0; % not3_ip2.p0not3pos.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pmw_k1 = 1000000.0d0; % not3_ip2.p0not3pos.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pmw_k_1 = 0.01d0; % not3_ip2.p0not3pos.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pmw_k2 = 0.5d0; % not3_ip2.rcnot.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Rxb_k_el = 2; % not3_ip2.rcnot.kd1 (VARIABLE) [s ^ (-1)]: % b1n constant decay rate Rxb_kd1 = 0.0116d0; % not3_ip2.rcnot.kd2 (VARIABLE) [s ^ (-1)]: % b1f constant decay rate Rxb_kd2 = 0.0116d0; % not3_ip2.rcnot.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1n] constant decay rate Rxb_k_dr1 = 0.0116d0; % not3_ip2.rcnot.theta1 (VARIABLE) [(m*s) ^ (-1)]: % C1 + RBS association rate constant Rxb_theta1 = 1.0d+9; % not3_ip2.rcnot.csi1 (VARIABLE) [s ^ (-1)]: % C1 + RBS dissociation rate constant Rxb_csi1 = 0.01d0; % not3_ip2.rcnot.k_lkr12 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rxb_k_lkr12 = 1.0d-5; % not3_ip2.rcnot.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency Rxb_k2r = 0.02d0; % not3_ip2.rcnot.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate Rxb_k_1r = 0.01d0; % not3_ip2.rcnot.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant Rxb_k1r = 1000000.0d0; % not3_ip2.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tj2_k_el = 0.056d0; % not3_ip2.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tj2_k_el_r = 0.049d0; % not3_ip2.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tj2_zeta_r = 0.5d0; % not3_ip2.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Toq_zeta = 31.25d0; % not3_ip2.paanot3pos_s.alpha1 (VARIABLE) [(s*m) ^ (-1)]: % Aa1 + o1f association constant Plw_alpha1 = 100000.0d0; % not3_ip2.paanot3pos_s.beta1 (VARIABLE) [s ^ (-1)]: % o1t dissociation rate Plw_beta1 = 0.01d0; % not3_ip2.paanot3pos_s.n1 (VARIABLE): % Number of signal molecules that bind to a TF Plw_n1 = 1; % not3_ip2.paanot3pos_s.k_d12 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Plw_k_d12 = 0.00116d0; % not3_ip2.paanot3pos_s.k_d12p (VARIABLE) [s ^ (-1)]: % k decay rate for polo1t Plw_k_d12p = 0.00116d0; % not3_ip2.paanot3pos_s.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Plw_k1 = 1000000.0d0; % not3_ip2.paanot3pos_s.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Plw_k_1 = 0.01d0; % not3_ip2.paanot3pos_s.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Plw_k2 = 1; % not3_ip2.paanot3pos_s.k11_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Plw_k11_lk = 5.0d-5; % not3_ip2.s0.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Sx4_k_el = 1; % not3_ip2.tes.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Tj1_zeta = 31.25d0; % not3_ip2.sips_off_1.k_s (VARIABLE) [m/s]: % False production rate Sug_k_s = 0.0d0; % not3_ip2.sips_off_1.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant Sug_k_d = 0.0d0; % not0_ip1.p0not0pos.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pxw_k1 = 1000000.0d0; % not0_ip1.p0not0pos.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pxw_k_1 = 0.01d0; % not0_ip1.p0not0pos.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pxw_k2 = 0.5d0; % not0_ip1.r0.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate R45_k_el = 2; % not0_ip1.r0.k_db (VARIABLE) [s ^ (-1)]: % free-mRNA constant decay rate R45_k_db = 0.0116d0; % not0_ip1.r0.k_drb (VARIABLE) [s ^ (-1)]: % [rb] constant decay rate R45_k_drb = 0.0116d0; % not0_ip1.r0.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency R45_k2r = 0.02d0; % not0_ip1.r0.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate R45_k_1r = 0.01d0; % not0_ip1.r0.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant R45_k1r = 1000000.0d0; % not0_ip1.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Trw_k_el = 0.056d0; % not0_ip1.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Trw_k_el_r = 0.049d0; % not0_ip1.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Trw_zeta_r = 0.5d0; % not0_ip1.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Txk_zeta = 31.25d0; % not0_ip1.prinot0pos.alpha1 (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1f association constant Pfe_alpha1 = 1.0d+9; % not0_ip1.prinot0pos.beta1 (VARIABLE) [s ^ (-1)]: % o1t dissociation rate Pfe_beta1 = 0.01d0; % not0_ip1.prinot0pos.n1 (VARIABLE): % Number of signal molecules that bind to a TF Pfe_n1 = 1; % not0_ip1.prinot0pos.k_d12 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pfe_k_d12 = 0.00116d0; % not0_ip1.prinot0pos.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pfe_k1 = 1000000.0d0; % not0_ip1.prinot0pos.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pfe_k_1 = 0.01d0; % not0_ip1.prinot0pos.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pfe_k2 = 0.05d0; % not0_ip1.prinot0pos.k12_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pfe_k12_lk = 5.0d-5; % not0_ip1.r0_2.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Raw_k_el = 2; % not0_ip1.r0_2.k_db (VARIABLE) [s ^ (-1)]: % free-mRNA constant decay rate Raw_k_db = 0.0116d0; % not0_ip1.r0_2.k_drb (VARIABLE) [s ^ (-1)]: % [rb] constant decay rate Raw_k_drb = 0.0116d0; % not0_ip1.r0_2.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency Raw_k2r = 0.02d0; % not0_ip1.r0_2.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate Raw_k_1r = 0.01d0; % not0_ip1.r0_2.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant Raw_k1r = 1000000.0d0; % not0_ip1.tf_2.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tyn_k_el = 0.056d0; % not0_ip1.tf_2.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tyn_k_el_r = 0.049d0; % not0_ip1.tf_2.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tyn_zeta_r = 0.5d0; % not0_ip1.te_2.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate T4b_zeta = 31.25d0; % not0_ip0.p0not0pos.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Ps2_k1 = 1000000.0d0; % not0_ip0.p0not0pos.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Ps2_k_1 = 0.01d0; % not0_ip0.p0not0pos.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Ps2_k2 = 0.5d0; % not0_ip0.r0.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Ryb_k_el = 2; % not0_ip0.r0.k_db (VARIABLE) [s ^ (-1)]: % free-mRNA constant decay rate Ryb_k_db = 0.0116d0; % not0_ip0.r0.k_drb (VARIABLE) [s ^ (-1)]: % [rb] constant decay rate Ryb_k_drb = 0.0116d0; % not0_ip0.r0.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency Ryb_k2r = 0.02d0; % not0_ip0.r0.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate Ryb_k_1r = 0.01d0; % not0_ip0.r0.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant Ryb_k1r = 1000000.0d0; % not0_ip0.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tm2_k_el = 0.056d0; % not0_ip0.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tm2_k_el_r = 0.049d0; % not0_ip0.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tm2_zeta_r = 0.5d0; % not0_ip0.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Trq_zeta = 31.25d0; % not0_ip0.prinot0pos.alpha1 (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1f association constant P9k_alpha1 = 1.0d+9; % not0_ip0.prinot0pos.beta1 (VARIABLE) [s ^ (-1)]: % o1t dissociation rate P9k_beta1 = 0.01d0; % not0_ip0.prinot0pos.n1 (VARIABLE): % Number of signal molecules that bind to a TF P9k_n1 = 1; % not0_ip0.prinot0pos.k_d12 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P9k_k_d12 = 0.00116d0; % not0_ip0.prinot0pos.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant P9k_k1 = 1000000.0d0; % not0_ip0.prinot0pos.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate P9k_k_1 = 0.01d0; % not0_ip0.prinot0pos.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency P9k_k2 = 0.05d0; % not0_ip0.prinot0pos.k12_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency P9k_k12_lk = 5.0d-5; % not0_ip0.r0_2.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate R52_k_el = 2; % not0_ip0.r0_2.k_db (VARIABLE) [s ^ (-1)]: % free-mRNA constant decay rate R52_k_db = 0.0116d0; % not0_ip0.r0_2.k_drb (VARIABLE) [s ^ (-1)]: % [rb] constant decay rate R52_k_drb = 0.0116d0; % not0_ip0.r0_2.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency R52_k2r = 0.02d0; % not0_ip0.r0_2.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate R52_k_1r = 0.01d0; % not0_ip0.r0_2.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant R52_k1r = 1000000.0d0; % not0_ip0.tf_2.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tst_k_el = 0.056d0; % not0_ip0.tf_2.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tst_k_el_r = 0.049d0; % not0_ip0.tf_2.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tst_zeta_r = 0.5d0; % not0_ip0.te_2.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Tyh_zeta = 31.25d0; % nor4ririlc_r_it1.pririnor.alpha1f (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2f association constant Pnd_alpha1f = 1.0d+9; % nor4ririlc_r_it1.pririnor.beta1f (VARIABLE) [s ^ (-1)]: % o1to2f dissociation rate Pnd_beta1f = 0.01d0; % nor4ririlc_r_it1.pririnor.alpha1t (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2t association constant Pnd_alpha1t = 1.0d+9; % nor4ririlc_r_it1.pririnor.beta1t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pnd_beta1t = 0.01d0; % nor4ririlc_r_it1.pririnor.alpha2f (VARIABLE) [(s*m) ^ (-1)]: % Ri2 + o1fo2f association constant Pnd_alpha2f = 1.0d+9; % nor4ririlc_r_it1.pririnor.beta2f (VARIABLE) [s ^ (-1)]: % o1fo2t dissociation rate Pnd_beta2f = 0.01d0; % nor4ririlc_r_it1.pririnor.alpha2t (VARIABLE) [(s*m) ^ (-1)]: % Ri2 + o1to2f association constant (cooperativity) Pnd_alpha2t = 1.0d+9; % nor4ririlc_r_it1.pririnor.beta2t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pnd_beta2t = 0.01d0; % nor4ririlc_r_it1.pririnor.n1 (VARIABLE): % Number of signal molecules that bind to a TF Pnd_n1 = 1; % nor4ririlc_r_it1.pririnor.n2 (VARIABLE): % Number of signal molecules that bind to a TF Pnd_n2 = 1; % nor4ririlc_r_it1.pririnor.k_d13 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pnd_k_d13 = 0.00116d0; % nor4ririlc_r_it1.pririnor.k_d14 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pnd_k_d14 = 0.00116d0; % nor4ririlc_r_it1.pririnor.k_d22 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pnd_k_d22 = 0.00116d0; % nor4ririlc_r_it1.pririnor.k_d24 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pnd_k_d24 = 0.00116d0; % nor4ririlc_r_it1.pririnor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pnd_k1 = 1000000.0d0; % nor4ririlc_r_it1.pririnor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pnd_k_1 = 0.01d0; % nor4ririlc_r_it1.pririnor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pnd_k2 = 0.05d0; % nor4ririlc_r_it1.pririnor.k22_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pnd_k22_lk = 5.0d-5; % nor4ririlc_r_it1.pririnor.k23_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pnd_k23_lk = 5.0d-5; % nor4ririlc_r_it1.pririnor.k24_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pnd_k24_lk = 5.0d-5; % nor4ririlc_r_it1.rclnor.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate R67_k_el = 2; % nor4ririlc_r_it1.rclnor.kd1 (VARIABLE) [s ^ (-1)]: % b1nb2n constant decay rate R67_kd1 = 0.0116d0; % nor4ririlc_r_it1.rclnor.kd2 (VARIABLE) [s ^ (-1)]: % b1nb2f constant decay rate R67_kd2 = 0.0116d0; % nor4ririlc_r_it1.rclnor.kd3 (VARIABLE) [s ^ (-1)]: % b1fb2n constant decay rate R67_kd3 = 0.0116d0; % nor4ririlc_r_it1.rclnor.kd4 (VARIABLE) [s ^ (-1)]: % b1fb2f constant decay rate R67_kd4 = 0.0116d0; % nor4ririlc_r_it1.rclnor.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1nb2n] constant decay rate R67_k_dr1 = 0.0116d0; % nor4ririlc_r_it1.rclnor.theta1n (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2n association rate constant R67_theta1n = 1.0d+9; % nor4ririlc_r_it1.rclnor.csi1n (VARIABLE) [s ^ (-1)]: % C1 + b1xb2n dissociation rate constant R67_csi1n = 0.01d0; % nor4ririlc_r_it1.rclnor.theta1f (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2f association rate constant R67_theta1f = 1.0d+9; % nor4ririlc_r_it1.rclnor.csi1f (VARIABLE) [s ^ (-1)]: % C1 + b1xb2f dissociation rate constant R67_csi1f = 0.01d0; % nor4ririlc_r_it1.rclnor.theta2n (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1nb2x association rate constant R67_theta2n = 1.0d+9; % nor4ririlc_r_it1.rclnor.csi2n (VARIABLE) [s ^ (-1)]: % l2 + b1nb2x dissociation rate constant R67_csi2n = 0.01d0; % nor4ririlc_r_it1.rclnor.theta2f (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1fb2x association rate constant R67_theta2f = 1.0d+9; % nor4ririlc_r_it1.rclnor.csi2f (VARIABLE) [s ^ (-1)]: % l2 + b1fb2x dissociation rate constant R67_csi2f = 0.01d0; % nor4ririlc_r_it1.rclnor.k_lkr22 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R67_k_lkr22 = 1.0d-5; % nor4ririlc_r_it1.rclnor.k_lkr23 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R67_k_lkr23 = 1.0d-5; % nor4ririlc_r_it1.rclnor.k_lkr24 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R67_k_lkr24 = 1.0d-5; % nor4ririlc_r_it1.rclnor.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency R67_k2r = 0.02d0; % nor4ririlc_r_it1.rclnor.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate R67_k_1r = 0.01d0; % nor4ririlc_r_it1.rclnor.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant R67_k1r = 1000000.0d0; % nor4ririlc_r_it1.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate T6u_k_el = 0.056d0; % nor4ririlc_r_it1.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate T6u_k_el_r = 0.049d0; % nor4ririlc_r_it1.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate T6u_zeta_r = 0.5d0; % nor4ririlc_r_it1.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Tcl_zeta = 31.25d0; % nor4ririlc_r_it0.pririnor.alpha1f (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2f association constant Pht_alpha1f = 1.0d+9; % nor4ririlc_r_it0.pririnor.beta1f (VARIABLE) [s ^ (-1)]: % o1to2f dissociation rate Pht_beta1f = 0.01d0; % nor4ririlc_r_it0.pririnor.alpha1t (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2t association constant Pht_alpha1t = 1.0d+9; % nor4ririlc_r_it0.pririnor.beta1t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pht_beta1t = 0.01d0; % nor4ririlc_r_it0.pririnor.alpha2f (VARIABLE) [(s*m) ^ (-1)]: % Ri2 + o1fo2f association constant Pht_alpha2f = 1.0d+9; % nor4ririlc_r_it0.pririnor.beta2f (VARIABLE) [s ^ (-1)]: % o1fo2t dissociation rate Pht_beta2f = 0.01d0; % nor4ririlc_r_it0.pririnor.alpha2t (VARIABLE) [(s*m) ^ (-1)]: % Ri2 + o1to2f association constant (cooperativity) Pht_alpha2t = 1.0d+9; % nor4ririlc_r_it0.pririnor.beta2t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pht_beta2t = 0.01d0; % nor4ririlc_r_it0.pririnor.n1 (VARIABLE): % Number of signal molecules that bind to a TF Pht_n1 = 1; % nor4ririlc_r_it0.pririnor.n2 (VARIABLE): % Number of signal molecules that bind to a TF Pht_n2 = 1; % nor4ririlc_r_it0.pririnor.k_d13 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pht_k_d13 = 0.00116d0; % nor4ririlc_r_it0.pririnor.k_d14 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pht_k_d14 = 0.00116d0; % nor4ririlc_r_it0.pririnor.k_d22 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pht_k_d22 = 0.00116d0; % nor4ririlc_r_it0.pririnor.k_d24 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pht_k_d24 = 0.00116d0; % nor4ririlc_r_it0.pririnor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pht_k1 = 1000000.0d0; % nor4ririlc_r_it0.pririnor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pht_k_1 = 0.01d0; % nor4ririlc_r_it0.pririnor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pht_k2 = 0.05d0; % nor4ririlc_r_it0.pririnor.k22_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pht_k22_lk = 5.0d-5; % nor4ririlc_r_it0.pririnor.k23_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pht_k23_lk = 5.0d-5; % nor4ririlc_r_it0.pririnor.k24_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pht_k24_lk = 5.0d-5; % nor4ririlc_r_it0.rclnor.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate R0n_k_el = 2; % nor4ririlc_r_it0.rclnor.kd1 (VARIABLE) [s ^ (-1)]: % b1nb2n constant decay rate R0n_kd1 = 0.0116d0; % nor4ririlc_r_it0.rclnor.kd2 (VARIABLE) [s ^ (-1)]: % b1nb2f constant decay rate R0n_kd2 = 0.0116d0; % nor4ririlc_r_it0.rclnor.kd3 (VARIABLE) [s ^ (-1)]: % b1fb2n constant decay rate R0n_kd3 = 0.0116d0; % nor4ririlc_r_it0.rclnor.kd4 (VARIABLE) [s ^ (-1)]: % b1fb2f constant decay rate R0n_kd4 = 0.0116d0; % nor4ririlc_r_it0.rclnor.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1nb2n] constant decay rate R0n_k_dr1 = 0.0116d0; % nor4ririlc_r_it0.rclnor.theta1n (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2n association rate constant R0n_theta1n = 1.0d+9; % nor4ririlc_r_it0.rclnor.csi1n (VARIABLE) [s ^ (-1)]: % C1 + b1xb2n dissociation rate constant R0n_csi1n = 0.01d0; % nor4ririlc_r_it0.rclnor.theta1f (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2f association rate constant R0n_theta1f = 1.0d+9; % nor4ririlc_r_it0.rclnor.csi1f (VARIABLE) [s ^ (-1)]: % C1 + b1xb2f dissociation rate constant R0n_csi1f = 0.01d0; % nor4ririlc_r_it0.rclnor.theta2n (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1nb2x association rate constant R0n_theta2n = 1.0d+9; % nor4ririlc_r_it0.rclnor.csi2n (VARIABLE) [s ^ (-1)]: % l2 + b1nb2x dissociation rate constant R0n_csi2n = 0.01d0; % nor4ririlc_r_it0.rclnor.theta2f (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1fb2x association rate constant R0n_theta2f = 1.0d+9; % nor4ririlc_r_it0.rclnor.csi2f (VARIABLE) [s ^ (-1)]: % l2 + b1fb2x dissociation rate constant R0n_csi2f = 0.01d0; % nor4ririlc_r_it0.rclnor.k_lkr22 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R0n_k_lkr22 = 1.0d-5; % nor4ririlc_r_it0.rclnor.k_lkr23 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R0n_k_lkr23 = 1.0d-5; % nor4ririlc_r_it0.rclnor.k_lkr24 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R0n_k_lkr24 = 1.0d-5; % nor4ririlc_r_it0.rclnor.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency R0n_k2r = 0.02d0; % nor4ririlc_r_it0.rclnor.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate R0n_k_1r = 0.01d0; % nor4ririlc_r_it0.rclnor.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant R0n_k1r = 1000000.0d0; % nor4ririlc_r_it0.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tgt_k_el = 0.056d0; % nor4ririlc_r_it0.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tgt_k_el_r = 0.049d0; % nor4ririlc_r_it0.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tgt_zeta_r = 0.5d0; % nor4ririlc_r_it0.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate T70_zeta = 31.25d0; % nor4rirall_r_it7.priranor.alpha1f (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2f association constant Pn6_alpha1f = 1.0d+9; % nor4rirall_r_it7.priranor.beta1f (VARIABLE) [s ^ (-1)]: % o1to2f dissociation rate Pn6_beta1f = 0.01d0; % nor4rirall_r_it7.priranor.alpha1t (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2t association constant Pn6_alpha1t = 1.0d+9; % nor4rirall_r_it7.priranor.beta1t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pn6_beta1t = 0.01d0; % nor4rirall_r_it7.priranor.alpha2f (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1fo2f association constant Pn6_alpha2f = 1.0d+9; % nor4rirall_r_it7.priranor.beta2f (VARIABLE) [s ^ (-1)]: % o1fo2t dissociation rate Pn6_beta2f = 0.01d0; % nor4rirall_r_it7.priranor.alpha2t (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1to2f association constant (cooperativity) Pn6_alpha2t = 1.0d+9; % nor4rirall_r_it7.priranor.beta2t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pn6_beta2t = 0.01d0; % nor4rirall_r_it7.priranor.n1 (VARIABLE): % Number of signal molecules that bind to a TF Pn6_n1 = 1; % nor4rirall_r_it7.priranor.n2 (VARIABLE): % Number of signal molecules that bind to a TF Pn6_n2 = 1; % nor4rirall_r_it7.priranor.k_d13 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pn6_k_d13 = 0.00116d0; % nor4rirall_r_it7.priranor.k_d14 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pn6_k_d14 = 0.00116d0; % nor4rirall_r_it7.priranor.k_d22 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pn6_k_d22 = 0.00116d0; % nor4rirall_r_it7.priranor.k_d24 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pn6_k_d24 = 0.00116d0; % nor4rirall_r_it7.priranor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pn6_k1 = 1000000.0d0; % nor4rirall_r_it7.priranor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pn6_k_1 = 0.01d0; % nor4rirall_r_it7.priranor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pn6_k2 = 0.05d0; % nor4rirall_r_it7.priranor.k22_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pn6_k22_lk = 5.0d-5; % nor4rirall_r_it7.priranor.k23_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pn6_k23_lk = 5.0d-5; % nor4rirall_r_it7.priranor.k24_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pn6_k24_lk = 5.0d-5; % nor4rirall_r_it7.rllnor.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Rkb_k_el = 2; % nor4rirall_r_it7.rllnor.kd1 (VARIABLE) [s ^ (-1)]: % b1nb2n constant decay rate Rkb_kd1 = 0.0116d0; % nor4rirall_r_it7.rllnor.kd2 (VARIABLE) [s ^ (-1)]: % b1nb2f constant decay rate Rkb_kd2 = 0.0116d0; % nor4rirall_r_it7.rllnor.kd3 (VARIABLE) [s ^ (-1)]: % b1fb2n constant decay rate Rkb_kd3 = 0.0116d0; % nor4rirall_r_it7.rllnor.kd4 (VARIABLE) [s ^ (-1)]: % b1fb2f constant decay rate Rkb_kd4 = 0.0116d0; % nor4rirall_r_it7.rllnor.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1nb2n] constant decay rate Rkb_k_dr1 = 0.0116d0; % nor4rirall_r_it7.rllnor.theta1n (VARIABLE) [(m*s) ^ (-1)]: % l1 + b1xb2n association rate constant Rkb_theta1n = 1.0d+9; % nor4rirall_r_it7.rllnor.csi1n (VARIABLE) [s ^ (-1)]: % l1 + b1xb2n dissociation rate constant Rkb_csi1n = 0.01d0; % nor4rirall_r_it7.rllnor.theta1f (VARIABLE) [(m*s) ^ (-1)]: % l1 + b1xb2f association rate constant Rkb_theta1f = 1.0d+9; % nor4rirall_r_it7.rllnor.csi1f (VARIABLE) [s ^ (-1)]: % l1 + b1xb2f dissociation rate constant Rkb_csi1f = 0.01d0; % nor4rirall_r_it7.rllnor.theta2n (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1nb2x association rate constant Rkb_theta2n = 1.0d+9; % nor4rirall_r_it7.rllnor.csi2n (VARIABLE) [s ^ (-1)]: % l2 + b1nb2x dissociation rate constant Rkb_csi2n = 0.01d0; % nor4rirall_r_it7.rllnor.theta2f (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1fb2x association rate constant Rkb_theta2f = 1.0d+9; % nor4rirall_r_it7.rllnor.csi2f (VARIABLE) [s ^ (-1)]: % l2 + b1fb2x dissociation rate constant Rkb_csi2f = 0.01d0; % nor4rirall_r_it7.rllnor.k_lkr22 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rkb_k_lkr22 = 1.0d-5; % nor4rirall_r_it7.rllnor.k_lkr23 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rkb_k_lkr23 = 1.0d-5; % nor4rirall_r_it7.rllnor.k_lkr24 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rkb_k_lkr24 = 1.0d-5; % nor4rirall_r_it7.rllnor.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency Rkb_k2r = 0.02d0; % nor4rirall_r_it7.rllnor.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate Rkb_k_1r = 0.01d0; % nor4rirall_r_it7.rllnor.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant Rkb_k1r = 1000000.0d0; % nor4rirall_r_it7.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate T34_k_el = 0.056d0; % nor4rirall_r_it7.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate T34_k_el_r = 0.049d0; % nor4rirall_r_it7.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate T34_zeta_r = 0.5d0; % nor4rirall_r_it7.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate T8u_zeta = 31.25d0; % nor4rirall_r_it7.sips_off_2.k_s (VARIABLE) [m/s]: % False production rate S42_k_s = 0.0d0; % nor4rirall_r_it7.sips_off_2.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant S42_k_d = 0.0d0; % nor4rirall_r_it3.priranor.alpha1f (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2f association constant Ps3_alpha1f = 1.0d+9; % nor4rirall_r_it3.priranor.beta1f (VARIABLE) [s ^ (-1)]: % o1to2f dissociation rate Ps3_beta1f = 0.01d0; % nor4rirall_r_it3.priranor.alpha1t (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2t association constant Ps3_alpha1t = 1.0d+9; % nor4rirall_r_it3.priranor.beta1t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Ps3_beta1t = 0.01d0; % nor4rirall_r_it3.priranor.alpha2f (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1fo2f association constant Ps3_alpha2f = 1.0d+9; % nor4rirall_r_it3.priranor.beta2f (VARIABLE) [s ^ (-1)]: % o1fo2t dissociation rate Ps3_beta2f = 0.01d0; % nor4rirall_r_it3.priranor.alpha2t (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1to2f association constant (cooperativity) Ps3_alpha2t = 1.0d+9; % nor4rirall_r_it3.priranor.beta2t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Ps3_beta2t = 0.01d0; % nor4rirall_r_it3.priranor.n1 (VARIABLE): % Number of signal molecules that bind to a TF Ps3_n1 = 1; % nor4rirall_r_it3.priranor.n2 (VARIABLE): % Number of signal molecules that bind to a TF Ps3_n2 = 1; % nor4rirall_r_it3.priranor.k_d13 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Ps3_k_d13 = 0.00116d0; % nor4rirall_r_it3.priranor.k_d14 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Ps3_k_d14 = 0.00116d0; % nor4rirall_r_it3.priranor.k_d22 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Ps3_k_d22 = 0.00116d0; % nor4rirall_r_it3.priranor.k_d24 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Ps3_k_d24 = 0.00116d0; % nor4rirall_r_it3.priranor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Ps3_k1 = 1000000.0d0; % nor4rirall_r_it3.priranor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Ps3_k_1 = 0.01d0; % nor4rirall_r_it3.priranor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Ps3_k2 = 0.05d0; % nor4rirall_r_it3.priranor.k22_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Ps3_k22_lk = 5.0d-5; % nor4rirall_r_it3.priranor.k23_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Ps3_k23_lk = 5.0d-5; % nor4rirall_r_it3.priranor.k24_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Ps3_k24_lk = 5.0d-5; % nor4rirall_r_it3.rllnor.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Rdk_k_el = 2; % nor4rirall_r_it3.rllnor.kd1 (VARIABLE) [s ^ (-1)]: % b1nb2n constant decay rate Rdk_kd1 = 0.0116d0; % nor4rirall_r_it3.rllnor.kd2 (VARIABLE) [s ^ (-1)]: % b1nb2f constant decay rate Rdk_kd2 = 0.0116d0; % nor4rirall_r_it3.rllnor.kd3 (VARIABLE) [s ^ (-1)]: % b1fb2n constant decay rate Rdk_kd3 = 0.0116d0; % nor4rirall_r_it3.rllnor.kd4 (VARIABLE) [s ^ (-1)]: % b1fb2f constant decay rate Rdk_kd4 = 0.0116d0; % nor4rirall_r_it3.rllnor.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1nb2n] constant decay rate Rdk_k_dr1 = 0.0116d0; % nor4rirall_r_it3.rllnor.theta1n (VARIABLE) [(m*s) ^ (-1)]: % l1 + b1xb2n association rate constant Rdk_theta1n = 1.0d+9; % nor4rirall_r_it3.rllnor.csi1n (VARIABLE) [s ^ (-1)]: % l1 + b1xb2n dissociation rate constant Rdk_csi1n = 0.01d0; % nor4rirall_r_it3.rllnor.theta1f (VARIABLE) [(m*s) ^ (-1)]: % l1 + b1xb2f association rate constant Rdk_theta1f = 1.0d+9; % nor4rirall_r_it3.rllnor.csi1f (VARIABLE) [s ^ (-1)]: % l1 + b1xb2f dissociation rate constant Rdk_csi1f = 0.01d0; % nor4rirall_r_it3.rllnor.theta2n (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1nb2x association rate constant Rdk_theta2n = 1.0d+9; % nor4rirall_r_it3.rllnor.csi2n (VARIABLE) [s ^ (-1)]: % l2 + b1nb2x dissociation rate constant Rdk_csi2n = 0.01d0; % nor4rirall_r_it3.rllnor.theta2f (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1fb2x association rate constant Rdk_theta2f = 1.0d+9; % nor4rirall_r_it3.rllnor.csi2f (VARIABLE) [s ^ (-1)]: % l2 + b1fb2x dissociation rate constant Rdk_csi2f = 0.01d0; % nor4rirall_r_it3.rllnor.k_lkr22 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rdk_k_lkr22 = 1.0d-5; % nor4rirall_r_it3.rllnor.k_lkr23 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rdk_k_lkr23 = 1.0d-5; % nor4rirall_r_it3.rllnor.k_lkr24 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rdk_k_lkr24 = 1.0d-5; % nor4rirall_r_it3.rllnor.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency Rdk_k2r = 0.02d0; % nor4rirall_r_it3.rllnor.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate Rdk_k_1r = 0.01d0; % nor4rirall_r_it3.rllnor.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant Rdk_k1r = 1000000.0d0; % nor4rirall_r_it3.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Twd_k_el = 0.056d0; % nor4rirall_r_it3.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Twd_k_el_r = 0.049d0; % nor4rirall_r_it3.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Twd_zeta_r = 0.5d0; % nor4rirall_r_it3.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate T23_zeta = 31.25d0; % nor4rirall_r_it3.sips_off_2.k_s (VARIABLE) [m/s]: % False production rate Sxb_k_s = 0.0d0; % nor4rirall_r_it3.sips_off_2.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant Sxb_k_d = 0.0d0; % nor4riracc_r_it6.priranor.alpha1f (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2f association constant P9b_alpha1f = 1.0d+9; % nor4riracc_r_it6.priranor.beta1f (VARIABLE) [s ^ (-1)]: % o1to2f dissociation rate P9b_beta1f = 0.01d0; % nor4riracc_r_it6.priranor.alpha1t (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2t association constant P9b_alpha1t = 1.0d+9; % nor4riracc_r_it6.priranor.beta1t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate P9b_beta1t = 0.01d0; % nor4riracc_r_it6.priranor.alpha2f (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1fo2f association constant P9b_alpha2f = 1.0d+9; % nor4riracc_r_it6.priranor.beta2f (VARIABLE) [s ^ (-1)]: % o1fo2t dissociation rate P9b_beta2f = 0.01d0; % nor4riracc_r_it6.priranor.alpha2t (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1to2f association constant (cooperativity) P9b_alpha2t = 1.0d+9; % nor4riracc_r_it6.priranor.beta2t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate P9b_beta2t = 0.01d0; % nor4riracc_r_it6.priranor.n1 (VARIABLE): % Number of signal molecules that bind to a TF P9b_n1 = 1; % nor4riracc_r_it6.priranor.n2 (VARIABLE): % Number of signal molecules that bind to a TF P9b_n2 = 1; % nor4riracc_r_it6.priranor.k_d13 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P9b_k_d13 = 0.00116d0; % nor4riracc_r_it6.priranor.k_d14 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P9b_k_d14 = 0.00116d0; % nor4riracc_r_it6.priranor.k_d22 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P9b_k_d22 = 0.00116d0; % nor4riracc_r_it6.priranor.k_d24 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P9b_k_d24 = 0.00116d0; % nor4riracc_r_it6.priranor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant P9b_k1 = 1000000.0d0; % nor4riracc_r_it6.priranor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate P9b_k_1 = 0.01d0; % nor4riracc_r_it6.priranor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency P9b_k2 = 0.05d0; % nor4riracc_r_it6.priranor.k22_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency P9b_k22_lk = 5.0d-5; % nor4riracc_r_it6.priranor.k23_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency P9b_k23_lk = 5.0d-5; % nor4riracc_r_it6.priranor.k24_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency P9b_k24_lk = 5.0d-5; % nor4riracc_r_it6.rccnor.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Rcl_k_el = 2; % nor4riracc_r_it6.rccnor.kd1 (VARIABLE) [s ^ (-1)]: % b1nb2n constant decay rate Rcl_kd1 = 0.0116d0; % nor4riracc_r_it6.rccnor.kd2 (VARIABLE) [s ^ (-1)]: % b1nb2f constant decay rate Rcl_kd2 = 0.0116d0; % nor4riracc_r_it6.rccnor.kd3 (VARIABLE) [s ^ (-1)]: % b1fb2n constant decay rate Rcl_kd3 = 0.0116d0; % nor4riracc_r_it6.rccnor.kd4 (VARIABLE) [s ^ (-1)]: % b1fb2f constant decay rate Rcl_kd4 = 0.0116d0; % nor4riracc_r_it6.rccnor.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1nb2n] constant decay rate Rcl_k_dr1 = 0.0116d0; % nor4riracc_r_it6.rccnor.theta1n (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2n association rate constant Rcl_theta1n = 1.0d+9; % nor4riracc_r_it6.rccnor.csi1n (VARIABLE) [s ^ (-1)]: % C1 + b1xb2n dissociation rate constant Rcl_csi1n = 0.01d0; % nor4riracc_r_it6.rccnor.theta1f (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2f association rate constant Rcl_theta1f = 1.0d+9; % nor4riracc_r_it6.rccnor.csi1f (VARIABLE) [s ^ (-1)]: % C1 + b1xb2f dissociation rate constant Rcl_csi1f = 0.01d0; % nor4riracc_r_it6.rccnor.theta2n (VARIABLE) [(m*s) ^ (-1)]: % C2 + b1nb2x association rate constant Rcl_theta2n = 1.0d+9; % nor4riracc_r_it6.rccnor.csi2n (VARIABLE) [s ^ (-1)]: % C2 + b1nb2x dissociation rate constant Rcl_csi2n = 0.01d0; % nor4riracc_r_it6.rccnor.theta2f (VARIABLE) [(m*s) ^ (-1)]: % C2 + b1fb2x association rate constant Rcl_theta2f = 1.0d+9; % nor4riracc_r_it6.rccnor.csi2f (VARIABLE) [s ^ (-1)]: % C2 + b1fb2x dissociation rate constant Rcl_csi2f = 0.01d0; % nor4riracc_r_it6.rccnor.k_lkr22 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rcl_k_lkr22 = 1.0d-5; % nor4riracc_r_it6.rccnor.k_lkr23 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rcl_k_lkr23 = 1.0d-5; % nor4riracc_r_it6.rccnor.k_lkr24 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rcl_k_lkr24 = 1.0d-5; % nor4riracc_r_it6.rccnor.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency Rcl_k2r = 0.02d0; % nor4riracc_r_it6.rccnor.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate Rcl_k_1r = 0.01d0; % nor4riracc_r_it6.rccnor.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant Rcl_k1r = 1000000.0d0; % nor4riracc_r_it6.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tp8_k_el = 0.056d0; % nor4riracc_r_it6.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tp8_k_el_r = 0.049d0; % nor4riracc_r_it6.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tp8_zeta_r = 0.5d0; % nor4riracc_r_it6.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Tuz_zeta = 31.25d0; % nor4riracc_r_it6.sips_off_2.k_s (VARIABLE) [m/s]: % False production rate Sq7_k_s = 0.0d0; % nor4riracc_r_it6.sips_off_2.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant Sq7_k_d = 0.0d0; % nor4riracc_r_it2.priranor.alpha1f (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2f association constant Pe8_alpha1f = 1.0d+9; % nor4riracc_r_it2.priranor.beta1f (VARIABLE) [s ^ (-1)]: % o1to2f dissociation rate Pe8_beta1f = 0.01d0; % nor4riracc_r_it2.priranor.alpha1t (VARIABLE) [(s*m) ^ (-1)]: % Ri1 + o1fo2t association constant Pe8_alpha1t = 1.0d+9; % nor4riracc_r_it2.priranor.beta1t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pe8_beta1t = 0.01d0; % nor4riracc_r_it2.priranor.alpha2f (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1fo2f association constant Pe8_alpha2f = 1.0d+9; % nor4riracc_r_it2.priranor.beta2f (VARIABLE) [s ^ (-1)]: % o1fo2t dissociation rate Pe8_beta2f = 0.01d0; % nor4riracc_r_it2.priranor.alpha2t (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1to2f association constant (cooperativity) Pe8_alpha2t = 1.0d+9; % nor4riracc_r_it2.priranor.beta2t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pe8_beta2t = 0.01d0; % nor4riracc_r_it2.priranor.n1 (VARIABLE): % Number of signal molecules that bind to a TF Pe8_n1 = 1; % nor4riracc_r_it2.priranor.n2 (VARIABLE): % Number of signal molecules that bind to a TF Pe8_n2 = 1; % nor4riracc_r_it2.priranor.k_d13 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pe8_k_d13 = 0.00116d0; % nor4riracc_r_it2.priranor.k_d14 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pe8_k_d14 = 0.00116d0; % nor4riracc_r_it2.priranor.k_d22 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pe8_k_d22 = 0.00116d0; % nor4riracc_r_it2.priranor.k_d24 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pe8_k_d24 = 0.00116d0; % nor4riracc_r_it2.priranor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pe8_k1 = 1000000.0d0; % nor4riracc_r_it2.priranor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pe8_k_1 = 0.01d0; % nor4riracc_r_it2.priranor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pe8_k2 = 0.05d0; % nor4riracc_r_it2.priranor.k22_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pe8_k22_lk = 5.0d-5; % nor4riracc_r_it2.priranor.k23_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pe8_k23_lk = 5.0d-5; % nor4riracc_r_it2.priranor.k24_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pe8_k24_lk = 5.0d-5; % nor4riracc_r_it2.rccnor.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Rqa_k_el = 2; % nor4riracc_r_it2.rccnor.kd1 (VARIABLE) [s ^ (-1)]: % b1nb2n constant decay rate Rqa_kd1 = 0.0116d0; % nor4riracc_r_it2.rccnor.kd2 (VARIABLE) [s ^ (-1)]: % b1nb2f constant decay rate Rqa_kd2 = 0.0116d0; % nor4riracc_r_it2.rccnor.kd3 (VARIABLE) [s ^ (-1)]: % b1fb2n constant decay rate Rqa_kd3 = 0.0116d0; % nor4riracc_r_it2.rccnor.kd4 (VARIABLE) [s ^ (-1)]: % b1fb2f constant decay rate Rqa_kd4 = 0.0116d0; % nor4riracc_r_it2.rccnor.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1nb2n] constant decay rate Rqa_k_dr1 = 0.0116d0; % nor4riracc_r_it2.rccnor.theta1n (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2n association rate constant Rqa_theta1n = 1.0d+9; % nor4riracc_r_it2.rccnor.csi1n (VARIABLE) [s ^ (-1)]: % C1 + b1xb2n dissociation rate constant Rqa_csi1n = 0.01d0; % nor4riracc_r_it2.rccnor.theta1f (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2f association rate constant Rqa_theta1f = 1.0d+9; % nor4riracc_r_it2.rccnor.csi1f (VARIABLE) [s ^ (-1)]: % C1 + b1xb2f dissociation rate constant Rqa_csi1f = 0.01d0; % nor4riracc_r_it2.rccnor.theta2n (VARIABLE) [(m*s) ^ (-1)]: % C2 + b1nb2x association rate constant Rqa_theta2n = 1.0d+9; % nor4riracc_r_it2.rccnor.csi2n (VARIABLE) [s ^ (-1)]: % C2 + b1nb2x dissociation rate constant Rqa_csi2n = 0.01d0; % nor4riracc_r_it2.rccnor.theta2f (VARIABLE) [(m*s) ^ (-1)]: % C2 + b1fb2x association rate constant Rqa_theta2f = 1.0d+9; % nor4riracc_r_it2.rccnor.csi2f (VARIABLE) [s ^ (-1)]: % C2 + b1fb2x dissociation rate constant Rqa_csi2f = 0.01d0; % nor4riracc_r_it2.rccnor.k_lkr22 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rqa_k_lkr22 = 1.0d-5; % nor4riracc_r_it2.rccnor.k_lkr23 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rqa_k_lkr23 = 1.0d-5; % nor4riracc_r_it2.rccnor.k_lkr24 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rqa_k_lkr24 = 1.0d-5; % nor4riracc_r_it2.rccnor.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency Rqa_k2r = 0.02d0; % nor4riracc_r_it2.rccnor.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate Rqa_k_1r = 0.01d0; % nor4riracc_r_it2.rccnor.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant Rqa_k1r = 1000000.0d0; % nor4riracc_r_it2.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tih_k_el = 0.056d0; % nor4riracc_r_it2.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tih_k_el_r = 0.049d0; % nor4riracc_r_it2.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tih_zeta_r = 0.5d0; % nor4riracc_r_it2.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Tzw_zeta = 31.25d0; % nor4riracc_r_it2.sips_off_2.k_s (VARIABLE) [m/s]: % False production rate Sjg_k_s = 0.0d0; % nor4riracc_r_it2.sips_off_2.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant Sjg_k_d = 0.0d0; % nor4raralc_r_it5.praranor.alpha1f (VARIABLE) [(s*m) ^ (-1)]: % Ra1 + o1fo2f association constant Pzb_alpha1f = 1.0d+9; % nor4raralc_r_it5.praranor.beta1f (VARIABLE) [s ^ (-1)]: % o1to2f dissociation rate Pzb_beta1f = 0.01d0; % nor4raralc_r_it5.praranor.alpha1t (VARIABLE) [(s*m) ^ (-1)]: % Ra1 + o1fo2t association constant Pzb_alpha1t = 1.0d+9; % nor4raralc_r_it5.praranor.beta1t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pzb_beta1t = 0.01d0; % nor4raralc_r_it5.praranor.alpha2f (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1fo2f association constant Pzb_alpha2f = 1.0d+9; % nor4raralc_r_it5.praranor.beta2f (VARIABLE) [s ^ (-1)]: % o1fo2t dissociation rate Pzb_beta2f = 0.01d0; % nor4raralc_r_it5.praranor.alpha2t (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1to2f association constant (cooperativity) Pzb_alpha2t = 1.0d+9; % nor4raralc_r_it5.praranor.beta2t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate Pzb_beta2t = 0.01d0; % nor4raralc_r_it5.praranor.n1 (VARIABLE): % Number of signal molecules that bind to a TF Pzb_n1 = 1; % nor4raralc_r_it5.praranor.n2 (VARIABLE): % Number of signal molecules that bind to a TF Pzb_n2 = 1; % nor4raralc_r_it5.praranor.k_d13 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pzb_k_d13 = 0.00116d0; % nor4raralc_r_it5.praranor.k_d14 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pzb_k_d14 = 0.00116d0; % nor4raralc_r_it5.praranor.k_d22 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pzb_k_d22 = 0.00116d0; % nor4raralc_r_it5.praranor.k_d24 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pzb_k_d24 = 0.00116d0; % nor4raralc_r_it5.praranor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pzb_k1 = 1000000.0d0; % nor4raralc_r_it5.praranor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pzb_k_1 = 0.01d0; % nor4raralc_r_it5.praranor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pzb_k2 = 0.05d0; % nor4raralc_r_it5.praranor.k22_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pzb_k22_lk = 5.0d-5; % nor4raralc_r_it5.praranor.k23_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pzb_k23_lk = 5.0d-5; % nor4raralc_r_it5.praranor.k24_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pzb_k24_lk = 5.0d-5; % nor4raralc_r_it5.rclnor.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Rc2_k_el = 2; % nor4raralc_r_it5.rclnor.kd1 (VARIABLE) [s ^ (-1)]: % b1nb2n constant decay rate Rc2_kd1 = 0.0116d0; % nor4raralc_r_it5.rclnor.kd2 (VARIABLE) [s ^ (-1)]: % b1nb2f constant decay rate Rc2_kd2 = 0.0116d0; % nor4raralc_r_it5.rclnor.kd3 (VARIABLE) [s ^ (-1)]: % b1fb2n constant decay rate Rc2_kd3 = 0.0116d0; % nor4raralc_r_it5.rclnor.kd4 (VARIABLE) [s ^ (-1)]: % b1fb2f constant decay rate Rc2_kd4 = 0.0116d0; % nor4raralc_r_it5.rclnor.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1nb2n] constant decay rate Rc2_k_dr1 = 0.0116d0; % nor4raralc_r_it5.rclnor.theta1n (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2n association rate constant Rc2_theta1n = 1.0d+9; % nor4raralc_r_it5.rclnor.csi1n (VARIABLE) [s ^ (-1)]: % C1 + b1xb2n dissociation rate constant Rc2_csi1n = 0.01d0; % nor4raralc_r_it5.rclnor.theta1f (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2f association rate constant Rc2_theta1f = 1.0d+9; % nor4raralc_r_it5.rclnor.csi1f (VARIABLE) [s ^ (-1)]: % C1 + b1xb2f dissociation rate constant Rc2_csi1f = 0.01d0; % nor4raralc_r_it5.rclnor.theta2n (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1nb2x association rate constant Rc2_theta2n = 1.0d+9; % nor4raralc_r_it5.rclnor.csi2n (VARIABLE) [s ^ (-1)]: % l2 + b1nb2x dissociation rate constant Rc2_csi2n = 0.01d0; % nor4raralc_r_it5.rclnor.theta2f (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1fb2x association rate constant Rc2_theta2f = 1.0d+9; % nor4raralc_r_it5.rclnor.csi2f (VARIABLE) [s ^ (-1)]: % l2 + b1fb2x dissociation rate constant Rc2_csi2f = 0.01d0; % nor4raralc_r_it5.rclnor.k_lkr22 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rc2_k_lkr22 = 1.0d-5; % nor4raralc_r_it5.rclnor.k_lkr23 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rc2_k_lkr23 = 1.0d-5; % nor4raralc_r_it5.rclnor.k_lkr24 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant Rc2_k_lkr24 = 1.0d-5; % nor4raralc_r_it5.rclnor.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency Rc2_k2r = 0.02d0; % nor4raralc_r_it5.rclnor.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate Rc2_k_1r = 0.01d0; % nor4raralc_r_it5.rclnor.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant Rc2_k1r = 1000000.0d0; % nor4raralc_r_it5.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate T10_k_el = 0.056d0; % nor4raralc_r_it5.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate T10_k_el_r = 0.049d0; % nor4raralc_r_it5.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate T10_zeta_r = 0.5d0; % nor4raralc_r_it5.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate T6r_zeta = 31.25d0; % nor4raralc_r_it5.sips_off_1.k_s (VARIABLE) [m/s]: % False production rate Sy7_k_s = 0.0d0; % nor4raralc_r_it5.sips_off_1.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant Sy7_k_d = 0.0d0; % nor4raralc_r_it5.sips_off_2.k_s (VARIABLE) [m/s]: % False production rate S1z_k_s = 0.0d0; % nor4raralc_r_it5.sips_off_2.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant S1z_k_d = 0.0d0; % nor4raralc_r_it4.praranor.alpha1f (VARIABLE) [(s*m) ^ (-1)]: % Ra1 + o1fo2f association constant P5e_alpha1f = 1.0d+9; % nor4raralc_r_it4.praranor.beta1f (VARIABLE) [s ^ (-1)]: % o1to2f dissociation rate P5e_beta1f = 0.01d0; % nor4raralc_r_it4.praranor.alpha1t (VARIABLE) [(s*m) ^ (-1)]: % Ra1 + o1fo2t association constant P5e_alpha1t = 1.0d+9; % nor4raralc_r_it4.praranor.beta1t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate P5e_beta1t = 0.01d0; % nor4raralc_r_it4.praranor.alpha2f (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1fo2f association constant P5e_alpha2f = 1.0d+9; % nor4raralc_r_it4.praranor.beta2f (VARIABLE) [s ^ (-1)]: % o1fo2t dissociation rate P5e_beta2f = 0.01d0; % nor4raralc_r_it4.praranor.alpha2t (VARIABLE) [(s*m) ^ (-1)]: % Ra2 + o1to2f association constant (cooperativity) P5e_alpha2t = 1.0d+9; % nor4raralc_r_it4.praranor.beta2t (VARIABLE) [s ^ (-1)]: % o1to2t dissociation rate P5e_beta2t = 0.01d0; % nor4raralc_r_it4.praranor.n1 (VARIABLE): % Number of signal molecules that bind to a TF P5e_n1 = 1; % nor4raralc_r_it4.praranor.n2 (VARIABLE): % Number of signal molecules that bind to a TF P5e_n2 = 1; % nor4raralc_r_it4.praranor.k_d13 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P5e_k_d13 = 0.00116d0; % nor4raralc_r_it4.praranor.k_d14 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P5e_k_d14 = 0.00116d0; % nor4raralc_r_it4.praranor.k_d22 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P5e_k_d22 = 0.00116d0; % nor4raralc_r_it4.praranor.k_d24 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate P5e_k_d24 = 0.00116d0; % nor4raralc_r_it4.praranor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant P5e_k1 = 1000000.0d0; % nor4raralc_r_it4.praranor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate P5e_k_1 = 0.01d0; % nor4raralc_r_it4.praranor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency P5e_k2 = 0.05d0; % nor4raralc_r_it4.praranor.k22_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency P5e_k22_lk = 5.0d-5; % nor4raralc_r_it4.praranor.k23_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency P5e_k23_lk = 5.0d-5; % nor4raralc_r_it4.praranor.k24_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency P5e_k24_lk = 5.0d-5; % nor4raralc_r_it4.rclnor.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate R6h_k_el = 2; % nor4raralc_r_it4.rclnor.kd1 (VARIABLE) [s ^ (-1)]: % b1nb2n constant decay rate R6h_kd1 = 0.0116d0; % nor4raralc_r_it4.rclnor.kd2 (VARIABLE) [s ^ (-1)]: % b1nb2f constant decay rate R6h_kd2 = 0.0116d0; % nor4raralc_r_it4.rclnor.kd3 (VARIABLE) [s ^ (-1)]: % b1fb2n constant decay rate R6h_kd3 = 0.0116d0; % nor4raralc_r_it4.rclnor.kd4 (VARIABLE) [s ^ (-1)]: % b1fb2f constant decay rate R6h_kd4 = 0.0116d0; % nor4raralc_r_it4.rclnor.k_dr1 (VARIABLE) [s ^ (-1)]: % [rb1nb2n] constant decay rate R6h_k_dr1 = 0.0116d0; % nor4raralc_r_it4.rclnor.theta1n (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2n association rate constant R6h_theta1n = 1.0d+9; % nor4raralc_r_it4.rclnor.csi1n (VARIABLE) [s ^ (-1)]: % C1 + b1xb2n dissociation rate constant R6h_csi1n = 0.01d0; % nor4raralc_r_it4.rclnor.theta1f (VARIABLE) [(m*s) ^ (-1)]: % C1 + b1xb2f association rate constant R6h_theta1f = 1.0d+9; % nor4raralc_r_it4.rclnor.csi1f (VARIABLE) [s ^ (-1)]: % C1 + b1xb2f dissociation rate constant R6h_csi1f = 0.01d0; % nor4raralc_r_it4.rclnor.theta2n (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1nb2x association rate constant R6h_theta2n = 1.0d+9; % nor4raralc_r_it4.rclnor.csi2n (VARIABLE) [s ^ (-1)]: % l2 + b1nb2x dissociation rate constant R6h_csi2n = 0.01d0; % nor4raralc_r_it4.rclnor.theta2f (VARIABLE) [(m*s) ^ (-1)]: % l2 + b1fb2x association rate constant R6h_theta2f = 1.0d+9; % nor4raralc_r_it4.rclnor.csi2f (VARIABLE) [s ^ (-1)]: % l2 + b1fb2x dissociation rate constant R6h_csi2f = 0.01d0; % nor4raralc_r_it4.rclnor.k_lkr22 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R6h_k_lkr22 = 1.0d-5; % nor4raralc_r_it4.rclnor.k_lkr23 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R6h_k_lkr23 = 1.0d-5; % nor4raralc_r_it4.rclnor.k_lkr24 (VARIABLE) [s ^ (-1)]: % Ribosome leakage rate constant R6h_k_lkr24 = 1.0d-5; % nor4raralc_r_it4.rclnor.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency R6h_k2r = 0.02d0; % nor4raralc_r_it4.rclnor.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate R6h_k_1r = 0.01d0; % nor4raralc_r_it4.rclnor.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant R6h_k1r = 1000000.0d0; % nor4raralc_r_it4.tf.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate Tvf_k_el = 0.056d0; % nor4raralc_r_it4.tf.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate Tvf_k_el_r = 0.049d0; % nor4raralc_r_it4.tf.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate Tvf_zeta_r = 0.5d0; % nor4raralc_r_it4.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate T16_zeta = 31.25d0; % nor4raralc_r_it4.sips_off_1.k_s (VARIABLE) [m/s]: % False production rate Ssm_k_s = 0.0d0; % nor4raralc_r_it4.sips_off_1.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant Ssm_k_d = 0.0d0; % nor4raralc_r_it4.sips_off_2.k_s (VARIABLE) [m/s]: % False production rate Swe_k_s = 0.0d0; % nor4raralc_r_it4.sips_off_2.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant Swe_k_d = 0.0d0; % nor1r_f_sf0.pranor.alpha1 (VARIABLE) [(s*m) ^ (-1)]: % Ra1 + o1f association constant Pas_alpha1 = 1.0d+9; % nor1r_f_sf0.pranor.beta1 (VARIABLE) [s ^ (-1)]: % o1t dissociation rate Pas_beta1 = 0.01d0; % nor1r_f_sf0.pranor.n1 (VARIABLE): % Number of signal molecules that bind to a TF Pas_n1 = 1; % nor1r_f_sf0.pranor.k_d12 (VARIABLE) [s ^ (-1)]: % Bound TF constant decay rate Pas_k_d12 = 0.00116d0; % nor1r_f_sf0.pranor.k1 (VARIABLE) [(m*s) ^ (-1)]: % Polymerase-promoter association constant Pas_k1 = 1000000.0d0; % nor1r_f_sf0.pranor.k_1 (VARIABLE) [s ^ (-1)]: % Polymerase-promoter dissociation rate Pas_k_1 = 0.01d0; % nor1r_f_sf0.pranor.k2 (VARIABLE) [s ^ (-1)]: % Transcription initiation frequency Pas_k2 = 0.05d0; % nor1r_f_sf0.pranor.k12_lk (VARIABLE) [s ^ (-1)]: % Basal transcription initiation frequency Pas_k12_lk = 5.0d-5; % nor1r_f_sf0.r0.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate R56_k_el = 2; % nor1r_f_sf0.r0.k_db (VARIABLE) [s ^ (-1)]: % free-mRNA constant decay rate R56_k_db = 0.0116d0; % nor1r_f_sf0.r0.k_drb (VARIABLE) [s ^ (-1)]: % [rb] constant decay rate R56_k_drb = 0.0116d0; % nor1r_f_sf0.r0.k2r (VARIABLE) [s ^ (-1)]: % Translation initiation frequency R56_k2r = 0.02d0; % nor1r_f_sf0.r0.k_1r (VARIABLE) [s ^ (-1)]: % Ribosome-RBS complex dissociation rate R56_k_1r = 0.01d0; % nor1r_f_sf0.r0.k1r (VARIABLE) [(m*s) ^ (-1)]: % Ribosome-RBS complex association rate constant R56_k1r = 1000000.0d0; % nor1r_f_sf0.fp.k_el (VARIABLE) [s ^ (-1)]: % Polymerase elongation rate F3m_k_el = 0.056d0; % nor1r_f_sf0.fp.k_el_r (VARIABLE) [s ^ (-1)]: % Ribosome elongation rate F3m_k_el_r = 0.049d0; % nor1r_f_sf0.fp.k_d (VARIABLE) [s ^ (-1)]: % Product decay rate F3m_k_d = 0.00116d0; % nor1r_f_sf0.fp.zeta_r (VARIABLE) [s ^ (-1)]: % [ru] dissociation rate F3m_zeta_r = 0.5d0; % nor1r_f_sf0.te.zeta (VARIABLE) [s ^ (-1)]: % [PolT] dissociation rate Tu1_zeta = 31.25d0; % nor1r_f_sf0.sips_off_1.k_s (VARIABLE) [m/s]: % False production rate Sri_k_s = 0.0d0; % nor1r_f_sf0.sips_off_1.k_d (VARIABLE) [s ^ (-1)]: % False constant decay rate constant Sri_k_d = 0.0d0; % int_r_pool.k_dm (VARIABLE) [s ^ (-1)]: % Monomer constant decay rate I9r_k_dm = 0.00116d0; % int_r_pool.k_dd (VARIABLE) [s ^ (-1)]: % Active dimer constant decay rate I9r_k_dd = 0.00116d0; % int_r_pool.delta (VARIABLE) [(m*s) ^ (-1)]: % Dimerization rate I9r_delta = 1.0d+9; % int_r_pool.epsilon (VARIABLE) [s ^ (-1)]: % Dimer dissociation rate I9r_epsilon = 10; % inp3_pool.k_dm (VARIABLE) [s ^ (-1)]: % Monomer constant decay rate Ii6_k_dm = 0.00116d0; % inp3_pool.k_dd (VARIABLE) [s ^ (-1)]: % Active dimer constant decay rate Ii6_k_dd = 0.00116d0; % inp3_pool.delta (VARIABLE) [(m*s) ^ (-1)]: % Dimerization rate Ii6_delta = 1.0d+9; % inp3_pool.epsilon (VARIABLE) [s ^ (-1)]: % Dimer dissociation rate Ii6_epsilon = 10; % inp2_pool.k_dm (VARIABLE) [s ^ (-1)]: % Monomer constant decay rate Ib2_k_dm = 0.00116d0; % inp2_pool.k_dd (VARIABLE) [s ^ (-1)]: % Active dimer constant decay rate Ib2_k_dd = 0.00116d0; % inp2_pool.delta (VARIABLE) [(m*s) ^ (-1)]: % Dimerization rate Ib2_delta = 1.0d+9; % inp2_pool.epsilon (VARIABLE) [s ^ (-1)]: % Dimer dissociation rate Ib2_epsilon = 10; % d_pool.k_s (VARIABLE) [m/s]: % Production rate D5f_k_s = 0.0d0; % d_pool.k_d (VARIABLE) [s ^ (-1)]: % Constant decay rate constant D5f_k_d = 3.21d-5; % d_neg_pool.k_dk (VARIABLE) [s ^ (-1)]: % Free sRNA decay rate Dck_k_dk = 0.0019d0; % c_pool.k_s (VARIABLE) [m/s]: % Production rate C5e_k_s = 0.0d0; % c_pool.k_d (VARIABLE) [s ^ (-1)]: % Constant decay rate constant C5e_k_d = 3.21d-5; % c_neg_pool.k_dk (VARIABLE) [s ^ (-1)]: % Free sRNA decay rate Ccj_k_dk = 0.0019d0; % b_pos_pool.k_dm (VARIABLE) [s ^ (-1)]: % Monomer constant decay rate Bh0_k_dm = 0.00116d0; % b_pos_pool.k_dd (VARIABLE) [s ^ (-1)]: % Active dimer constant decay rate Bh0_k_dd = 0.00116d0; % b_pos_pool.k_ddi (VARIABLE) [s ^ (-1)]: % Inactive dimer constant decay rate Bh0_k_ddi = 0.00116d0; % b_pos_pool.delta (VARIABLE) [(m*s) ^ (-1)]: % Dimerization rate Bh0_delta = 1.0d+9; % b_pos_pool.epsilon (VARIABLE) [s ^ (-1)]: % Dimer dissociation rate Bh0_epsilon = 10; % b_pos_pool.lambda (VARIABLE) [(m*s) ^ (-1)]: % TF + signals association rate constant Bh0_lambda = 1000000.0d0; % b_pos_pool.mu (VARIABLE) [s ^ (-1)]: % TF + signals dissociation rate Bh0_mu = 0.001d0; % b_pool.k_s (VARIABLE) [m/s]: % Production rate B5d_k_s = 0.0d0; % b_pool.k_d (VARIABLE) [s ^ (-1)]: % Constant decay rate constant B5d_k_d = 3.21d-5; % b_neg_pool.k_dm (VARIABLE) [s ^ (-1)]: % Monomer constant decay rate Bci_k_dm = 0.00116d0; % b_neg_pool.k_dd (VARIABLE) [s ^ (-1)]: % Active dimer constant decay rate Bci_k_dd = 0.00116d0; % b_neg_pool.delta (VARIABLE) [(m*s) ^ (-1)]: % Dimerization rate Bci_delta = 1.0d+9; % b_neg_pool.epsilon (VARIABLE) [s ^ (-1)]: % Dimer dissociation rate Bci_epsilon = 10; % a_pos_pool.k_dm (VARIABLE) [s ^ (-1)]: % Monomer constant decay rate Agz_k_dm = 0.00116d0; % a_pos_pool.k_dd (VARIABLE) [s ^ (-1)]: % Active dimer constant decay rate Agz_k_dd = 0.00116d0; % a_pos_pool.k_ddi (VARIABLE) [s ^ (-1)]: % Inactive dimer constant decay rate Agz_k_ddi = 0.00116d0; % a_pos_pool.delta (VARIABLE) [(m*s) ^ (-1)]: % Dimerization rate Agz_delta = 1.0d+9; % a_pos_pool.epsilon (VARIABLE) [s ^ (-1)]: % Dimer dissociation rate Agz_epsilon = 10; % a_pos_pool.lambda (VARIABLE) [(m*s) ^ (-1)]: % TF + signals association rate constant Agz_lambda = 1000000.0d0; % a_pos_pool.mu (VARIABLE) [s ^ (-1)]: % TF + signals dissociation rate Agz_mu = 0.001d0; % a_pool.k_s (VARIABLE) [m/s]: % Production rate A5c_k_s = 0.0d0; % a_pool.k_d (VARIABLE) [s ^ (-1)]: % Constant decay rate constant A5c_k_d = 3.21d-5; % a_neg_pool.k_dm (VARIABLE) [s ^ (-1)]: % Monomer constant decay rate Ach_k_dm = 0.00116d0; % a_neg_pool.k_dd (VARIABLE) [s ^ (-1)]: % Active dimer constant decay rate Ach_k_dd = 0.00116d0; % a_neg_pool.delta (VARIABLE) [(m*s) ^ (-1)]: % Dimerization rate Ach_delta = 1.0d+9; % a_neg_pool.epsilon (VARIABLE) [s ^ (-1)]: % Dimer dissociation rate Ach_epsilon = 10; switch flag case {'','mass','jacobian'} end if t >= 20000 A5c_k_s = ia; B5d_k_s = ib; C5e_k_s = ic; D5f_k_s = id; end switch flag case '' % Initialize the result vector f=0*x ; % not0_ip0.prinot0pos.polo1f_eq (EQUATION) % dx(idx_P9k_polo1f) f(idx_P9k_polo1f_eq) = ((P9k_k1 * x(idx_P4i_pol_free) * x(idx_P9k_o1f)) + (- (P9k_k_1 * x(idx_P9k_polo1f))) + (- (P9k_k2 * x(idx_P9k_polo1f)))); % not0_ip0.prinot0pos.o1t_eq (EQUATION) % dx(idx_P9k_o1t) f(idx_P9k_o1t_eq) = ((P9k_alpha1 * x(idx_Agz_fd) * x(idx_P9k_o1f)) + (- (P9k_beta1 * x(idx_P9k_o1t))) + (- (P9k_k_d12 * x(idx_P9k_o1t)))); % not0_ip0.prinot0pos.o1f_eq (EQUATION) % dx(idx_P9k_o1f) f(idx_P9k_o1f_eq) = ((P9k_beta1 * x(idx_P9k_o1t)) + (P9k_k_d12 * x(idx_P9k_o1t)) + (P9k_k_1 * x(idx_P9k_polo1f)) + (P9k_k2 * x(idx_P9k_polo1f)) + (- (P9k_alpha1 * x(idx_Agz_fd) * x(idx_P9k_o1f))) + (- (P9k_k1 * x(idx_P4i_pol_free) * x(idx_P9k_o1f)))); % not0_ip1.prinot0pos.polo1f_eq (EQUATION) % dx(idx_Pfe_polo1f) f(idx_Pfe_polo1f_eq) = ((Pfe_k1 * x(idx_P4i_pol_free) * x(idx_Pfe_o1f)) + (- (Pfe_k_1 * x(idx_Pfe_polo1f))) + (- (Pfe_k2 * x(idx_Pfe_polo1f)))); % not0_ip1.prinot0pos.o1t_eq (EQUATION) % dx(idx_Pfe_o1t) f(idx_Pfe_o1t_eq) = ((Pfe_alpha1 * x(idx_Bh0_fd) * x(idx_Pfe_o1f)) + (- (Pfe_beta1 * x(idx_Pfe_o1t))) + (- (Pfe_k_d12 * x(idx_Pfe_o1t)))); % not0_ip1.prinot0pos.o1f_eq (EQUATION) % dx(idx_Pfe_o1f) f(idx_Pfe_o1f_eq) = ((Pfe_beta1 * x(idx_Pfe_o1t)) + (Pfe_k_d12 * x(idx_Pfe_o1t)) + (Pfe_k_1 * x(idx_Pfe_polo1f)) + (Pfe_k2 * x(idx_Pfe_polo1f)) + (- (Pfe_alpha1 * x(idx_Bh0_fd) * x(idx_Pfe_o1f))) + (- (Pfe_k1 * x(idx_P4i_pol_free) * x(idx_Pfe_o1f)))); % nor4riracc_r_it6.priranor.polo1fo2f_eq (EQUATION) % dx(idx_P9b_polo1fo2f) f(idx_P9b_polo1fo2f_eq) = ((P9b_k1 * x(idx_P4i_pol_free) * x(idx_P9b_o1fo2f)) + (- (P9b_k_1 * x(idx_P9b_polo1fo2f))) + (- (P9b_k2 * x(idx_P9b_polo1fo2f)))); % nor4riracc_r_it6.priranor.o1to2f_eq (EQUATION) % dx(idx_P9b_o1to2f) f(idx_P9b_o1to2f_eq) = ((P9b_alpha1f * x(idx_Bh0_fd) * x(idx_P9b_o1fo2f)) + (P9b_beta2t * x(idx_P9b_o1to2t)) + (P9b_k_d24 * x(idx_P9b_o1to2t)) + (- (P9b_beta1f * x(idx_P9b_o1to2f))) + (- (P9b_alpha2t * x(idx_Ach_fd) * x(idx_P9b_o1to2f))) + (- (P9b_k_d13 * x(idx_P9b_o1to2f)))); % nor4riracc_r_it6.priranor.o1to2t_eq (EQUATION) % dx(idx_P9b_o1to2t) f(idx_P9b_o1to2t_eq) = ((P9b_alpha1t * x(idx_Bh0_fd) * x(idx_P9b_o1fo2t)) + (P9b_alpha2t * x(idx_Ach_fd) * x(idx_P9b_o1to2f)) + (- (P9b_beta1t * x(idx_P9b_o1to2t))) + (- (P9b_beta2t * x(idx_P9b_o1to2t))) + (- (P9b_k_d14 * x(idx_P9b_o1to2t))) + (- (P9b_k_d24 * x(idx_P9b_o1to2t)))); % nor4riracc_r_it6.priranor.o1fo2t_eq (EQUATION) % dx(idx_P9b_o1fo2t) f(idx_P9b_o1fo2t_eq) = ((P9b_beta1t * x(idx_P9b_o1to2t)) + (P9b_alpha2f * x(idx_Ach_fd) * x(idx_P9b_o1fo2f)) + (P9b_k_d14 * x(idx_P9b_o1to2t)) + (- (P9b_alpha1t * x(idx_Bh0_fd) * x(idx_P9b_o1fo2t))) + (- (P9b_beta2f * x(idx_P9b_o1fo2t))) + (- (P9b_k_d22 * x(idx_P9b_o1fo2t)))); % nor4riracc_r_it6.priranor.o1fo2f_eq (EQUATION) % dx(idx_P9b_o1fo2f) f(idx_P9b_o1fo2f_eq) = ((P9b_beta1f * x(idx_P9b_o1to2f)) + (P9b_beta2f * x(idx_P9b_o1fo2t)) + (P9b_k_d13 * x(idx_P9b_o1to2f)) + (P9b_k_d22 * x(idx_P9b_o1fo2t)) + (P9b_k_1 * x(idx_P9b_polo1fo2f)) + (P9b_k2 * x(idx_P9b_polo1fo2f)) + (- (P9b_alpha1f * x(idx_Bh0_fd) * x(idx_P9b_o1fo2f))) + (- (P9b_alpha2f * x(idx_Ach_fd) * x(idx_P9b_o1fo2f))) + (- (P9b_k1 * x(idx_P4i_pol_free) * x(idx_P9b_o1fo2f)))); % nor4rirall_r_it7.priranor.polo1fo2f_eq (EQUATION) % dx(idx_Pn6_polo1fo2f) f(idx_Pn6_polo1fo2f_eq) = ((Pn6_k1 * x(idx_P4i_pol_free) * x(idx_Pn6_o1fo2f)) + (- (Pn6_k_1 * x(idx_Pn6_polo1fo2f))) + (- (Pn6_k2 * x(idx_Pn6_polo1fo2f)))); % nor4rirall_r_it7.priranor.o1to2f_eq (EQUATION) % dx(idx_Pn6_o1to2f) f(idx_Pn6_o1to2f_eq) = ((Pn6_alpha1f * x(idx_Bh0_fd) * x(idx_Pn6_o1fo2f)) + (Pn6_beta2t * x(idx_Pn6_o1to2t)) + (Pn6_k_d24 * x(idx_Pn6_o1to2t)) + (- (Pn6_beta1f * x(idx_Pn6_o1to2f))) + (- (Pn6_alpha2t * x(idx_Ach_fd) * x(idx_Pn6_o1to2f))) + (- (Pn6_k_d13 * x(idx_Pn6_o1to2f)))); % nor4rirall_r_it7.priranor.o1to2t_eq (EQUATION) % dx(idx_Pn6_o1to2t) f(idx_Pn6_o1to2t_eq) = ((Pn6_alpha1t * x(idx_Bh0_fd) * x(idx_Pn6_o1fo2t)) + (Pn6_alpha2t * x(idx_Ach_fd) * x(idx_Pn6_o1to2f)) + (- (Pn6_beta1t * x(idx_Pn6_o1to2t))) + (- (Pn6_beta2t * x(idx_Pn6_o1to2t))) + (- (Pn6_k_d14 * x(idx_Pn6_o1to2t))) + (- (Pn6_k_d24 * x(idx_Pn6_o1to2t)))); % nor4rirall_r_it7.priranor.o1fo2t_eq (EQUATION) % dx(idx_Pn6_o1fo2t) f(idx_Pn6_o1fo2t_eq) = ((Pn6_beta1t * x(idx_Pn6_o1to2t)) + (Pn6_alpha2f * x(idx_Ach_fd) * x(idx_Pn6_o1fo2f)) + (Pn6_k_d14 * x(idx_Pn6_o1to2t)) + (- (Pn6_alpha1t * x(idx_Bh0_fd) * x(idx_Pn6_o1fo2t))) + (- (Pn6_beta2f * x(idx_Pn6_o1fo2t))) + (- (Pn6_k_d22 * x(idx_Pn6_o1fo2t)))); % nor4rirall_r_it7.priranor.o1fo2f_eq (EQUATION) % dx(idx_Pn6_o1fo2f) f(idx_Pn6_o1fo2f_eq) = ((Pn6_beta1f * x(idx_Pn6_o1to2f)) + (Pn6_beta2f * x(idx_Pn6_o1fo2t)) + (Pn6_k_d13 * x(idx_Pn6_o1to2f)) + (Pn6_k_d22 * x(idx_Pn6_o1fo2t)) + (Pn6_k_1 * x(idx_Pn6_polo1fo2f)) + (Pn6_k2 * x(idx_Pn6_polo1fo2f)) + (- (Pn6_alpha1f * x(idx_Bh0_fd) * x(idx_Pn6_o1fo2f))) + (- (Pn6_alpha2f * x(idx_Ach_fd) * x(idx_Pn6_o1fo2f))) + (- (Pn6_k1 * x(idx_P4i_pol_free) * x(idx_Pn6_o1fo2f)))); % not3_ip3.p0not3pos.p_free_eq (EQUATION) % dx(idx_Psq_p_free) f(idx_Psq_p_free_eq) = ((Psq_k_1 * x(idx_Psq_ppol)) + (Psq_k2 * x(idx_Psq_ppol)) + (- (Psq_k1 * x(idx_P4i_pol_free) * x(idx_Psq_p_free)))); % not3_ip3.p0not3pos.ppol_eq (EQUATION) % dx(idx_Psq_ppol) f(idx_Psq_ppol_eq) = ((Psq_k1 * x(idx_P4i_pol_free) * x(idx_Psq_p_free)) + (- (Psq_k_1 * x(idx_Psq_ppol))) + (- (Psq_k2 * x(idx_Psq_ppol)))); % not3_ip3.rcnot.polb_eq (EQUATION) % dx(idx_R35_polb) f(idx_R35_polb_eq) = ((Psq_k2 * x(idx_Psq_ppol)) + (- (R35_k_el * x(idx_R35_polb)))); % not3_ip2.p0not3pos.p_free_eq (EQUATION) % dx(idx_Pmw_p_free) f(idx_Pmw_p_free_eq) = ((Pmw_k_1 * x(idx_Pmw_ppol)) + (Pmw_k2 * x(idx_Pmw_ppol)) + (- (Pmw_k1 * x(idx_P4i_pol_free) * x(idx_Pmw_p_free)))); % not3_ip2.p0not3pos.ppol_eq (EQUATION) % dx(idx_Pmw_ppol) f(idx_Pmw_ppol_eq) = ((Pmw_k1 * x(idx_P4i_pol_free) * x(idx_Pmw_p_free)) + (- (Pmw_k_1 * x(idx_Pmw_ppol))) + (- (Pmw_k2 * x(idx_Pmw_ppol)))); % not3_ip2.rcnot.polb_eq (EQUATION) % dx(idx_Rxb_polb) f(idx_Rxb_polb_eq) = ((Pmw_k2 * x(idx_Pmw_ppol)) + (- (Rxb_k_el * x(idx_Rxb_polb)))); % nor4riracc_r_it2.priranor.polo1fo2f_eq (EQUATION) % dx(idx_Pe8_polo1fo2f) f(idx_Pe8_polo1fo2f_eq) = ((Pe8_k1 * x(idx_P4i_pol_free) * x(idx_Pe8_o1fo2f)) + (- (Pe8_k_1 * x(idx_Pe8_polo1fo2f))) + (- (Pe8_k2 * x(idx_Pe8_polo1fo2f)))); % nor4riracc_r_it2.rccnor.polb_eq (EQUATION) % dx(idx_Rqa_polb) f(idx_Rqa_polb_eq) = ((Pe8_k2 * x(idx_Pe8_polo1fo2f)) + (- (Rqa_k_el * x(idx_Rqa_polb)))); % nor4raralc_r_it4.praranor.polo1fo2f_eq (EQUATION) % dx(idx_P5e_polo1fo2f) f(idx_P5e_polo1fo2f_eq) = ((P5e_k1 * x(idx_P4i_pol_free) * x(idx_P5e_o1fo2f)) + (- (P5e_k_1 * x(idx_P5e_polo1fo2f))) + (- (P5e_k2 * x(idx_P5e_polo1fo2f)))); % nor4raralc_r_it4.rclnor.polb_eq (EQUATION) % dx(idx_R6h_polb) f(idx_R6h_polb_eq) = ((P5e_k2 * x(idx_P5e_polo1fo2f)) + (- (R6h_k_el * x(idx_R6h_polb)))); % nor4riracc_r_it6.rccnor.polb_eq (EQUATION) % dx(idx_Rcl_polb) f(idx_Rcl_polb_eq) = ((P9b_k2 * x(idx_P9b_polo1fo2f)) + (- (Rcl_k_el * x(idx_Rcl_polb)))); % nor4ririlc_r_it0.pririnor.polo1fo2f_eq (EQUATION) % dx(idx_Pht_polo1fo2f) f(idx_Pht_polo1fo2f_eq) = ((Pht_k1 * x(idx_P4i_pol_free) * x(idx_Pht_o1fo2f)) + (- (Pht_k_1 * x(idx_Pht_polo1fo2f))) + (- (Pht_k2 * x(idx_Pht_polo1fo2f)))); % nor4ririlc_r_it0.rclnor.polb_eq (EQUATION) % dx(idx_R0n_polb) f(idx_R0n_polb_eq) = ((Pht_k2 * x(idx_Pht_polo1fo2f)) + (- (R0n_k_el * x(idx_R0n_polb)))); % nor4rirall_r_it7.rllnor.polb_eq (EQUATION) % dx(idx_Rkb_polb) f(idx_Rkb_polb_eq) = ((Pn6_k2 * x(idx_Pn6_polo1fo2f)) + (- (Rkb_k_el * x(idx_Rkb_polb)))); % not3_ip3.tf.ra_eq (EQUATION) % dx(idx_Tow_ra) f(idx_Tow_ra_eq) = ((R35_k2r * x(idx_R35_rb1n)) + (- (Tow_k_el_r * x(idx_Tow_ra)))); % inp3_pool.fm_eq (EQUATION) % dx(idx_Ii6_fm) f(idx_Ii6_fm_eq) = ((2 * Ii6_epsilon * x(idx_Ii6_fd)) + (- (2 * Ii6_delta * (x(idx_Ii6_fm) ^ 2))) + (- (Ii6_k_dm * x(idx_Ii6_fm))) + (R35_k_lkr12 * x(idx_R35_b1f)) + (Tow_k_el_r * x(idx_Tow_ra))); % not3_ip3.paanot3pos_s.polo1t_eq (EQUATION) % dx(idx_Prq_polo1t) f(idx_Prq_polo1t_eq) = ((Prq_k1 * x(idx_P4i_pol_free) * x(idx_Prq_o1t)) + (- (Prq_k_1 * x(idx_Prq_polo1t))) + (- (Prq_k2 * x(idx_Prq_polo1t))) + (- (Prq_k_d12p * x(idx_Prq_polo1t)))); % not3_ip3.paanot3pos_s.o1t_eq (EQUATION) % dx(idx_Prq_o1t) f(idx_Prq_o1t_eq) = ((Prq_alpha1 * x(idx_Ii6_fd) * x(idx_Prq_o1f)) + (Prq_k_1 * x(idx_Prq_polo1t)) + (Prq_k2 * x(idx_Prq_polo1t)) + (- (Prq_beta1 * x(idx_Prq_o1t))) + (- (Prq_k_d12 * x(idx_Prq_o1t))) + (- (Prq_k1 * x(idx_P4i_pol_free) * x(idx_Prq_o1t)))); % inp3_pool.fd_eq (EQUATION) % dx(idx_Ii6_fd) f(idx_Ii6_fd_eq) = ((Ii6_delta * (x(idx_Ii6_fm) ^ 2)) + (- (Ii6_epsilon * x(idx_Ii6_fd))) + (- (Prq_alpha1 * x(idx_Ii6_fd) * x(idx_Prq_o1f))) + (Prq_beta1 * x(idx_Prq_o1t)) + (- (Ii6_k_dd * x(idx_Ii6_fd)))); % not3_ip3.paanot3pos_s.o1f_eq (EQUATION) % dx(idx_Prq_o1f) f(idx_Prq_o1f_eq) = ((Prq_beta1 * x(idx_Prq_o1t)) + (Prq_k_d12 * x(idx_Prq_o1t)) + (Prq_k_d12p * x(idx_Prq_polo1t)) + (- (Prq_alpha1 * x(idx_Ii6_fd) * x(idx_Prq_o1f)))); % not3_ip3.s0.pols_eq (EQUATION) % dx(idx_S2y_pols) f(idx_S2y_pols_eq) = ((Prq_k2 * x(idx_Prq_polo1t)) + (- (S2y_k_el * x(idx_S2y_pols)))); % not3_ip3.tes.polt_eq (EQUATION) % dx(idx_Tov_polt) f(idx_Tov_polt_eq) = ((S2y_k_el * x(idx_S2y_pols)) + (- (Tov_zeta * x(idx_Tov_polt)))); % nor4rirall_r_it3.rllnor.polb_eq (EQUATION) % dx(idx_Rdk_polb) f(idx_Rdk_polb_eq) = ((Ps3_k2 * x(idx_Ps3_polo1fo2f)) + (- (Rdk_k_el * x(idx_Rdk_polb)))); % not3_ip2.tf.ra_eq (EQUATION) % dx(idx_Tj2_ra) f(idx_Tj2_ra_eq) = ((Rxb_k2r * x(idx_Rxb_rb1n)) + (- (Tj2_k_el_r * x(idx_Tj2_ra)))); % inp2_pool.fm_eq (EQUATION) % dx(idx_Ib2_fm) f(idx_Ib2_fm_eq) = ((2 * Ib2_epsilon * x(idx_Ib2_fd)) + (- (2 * Ib2_delta * (x(idx_Ib2_fm) ^ 2))) + (- (Ib2_k_dm * x(idx_Ib2_fm))) + (Rxb_k_lkr12 * x(idx_Rxb_b1f)) + (Tj2_k_el_r * x(idx_Tj2_ra))); % not3_ip2.paanot3pos_s.polo1t_eq (EQUATION) % dx(idx_Plw_polo1t) f(idx_Plw_polo1t_eq) = ((Plw_k1 * x(idx_P4i_pol_free) * x(idx_Plw_o1t)) + (- (Plw_k_1 * x(idx_Plw_polo1t))) + (- (Plw_k2 * x(idx_Plw_polo1t))) + (- (Plw_k_d12p * x(idx_Plw_polo1t)))); % not3_ip2.paanot3pos_s.o1t_eq (EQUATION) % dx(idx_Plw_o1t) f(idx_Plw_o1t_eq) = ((Plw_alpha1 * x(idx_Ib2_fd) * x(idx_Plw_o1f)) + (Plw_k_1 * x(idx_Plw_polo1t)) + (Plw_k2 * x(idx_Plw_polo1t)) + (- (Plw_beta1 * x(idx_Plw_o1t))) + (- (Plw_k_d12 * x(idx_Plw_o1t))) + (- (Plw_k1 * x(idx_P4i_pol_free) * x(idx_Plw_o1t)))); % inp2_pool.fd_eq (EQUATION) % dx(idx_Ib2_fd) f(idx_Ib2_fd_eq) = ((Ib2_delta * (x(idx_Ib2_fm) ^ 2)) + (- (Ib2_epsilon * x(idx_Ib2_fd))) + (- (Plw_alpha1 * x(idx_Ib2_fd) * x(idx_Plw_o1f))) + (Plw_beta1 * x(idx_Plw_o1t)) + (- (Ib2_k_dd * x(idx_Ib2_fd)))); % not3_ip2.paanot3pos_s.o1f_eq (EQUATION) % dx(idx_Plw_o1f) f(idx_Plw_o1f_eq) = ((Plw_beta1 * x(idx_Plw_o1t)) + (Plw_k_d12 * x(idx_Plw_o1t)) + (Plw_k_d12p * x(idx_Plw_polo1t)) + (- (Plw_alpha1 * x(idx_Ib2_fd) * x(idx_Plw_o1f)))); % not3_ip2.s0.pols_eq (EQUATION) % dx(idx_Sx4_pols) f(idx_Sx4_pols_eq) = ((Plw_k2 * x(idx_Plw_polo1t)) + (- (Sx4_k_el * x(idx_Sx4_pols)))); % not3_ip2.tes.polt_eq (EQUATION) % dx(idx_Tj1_polt) f(idx_Tj1_polt_eq) = ((Sx4_k_el * x(idx_Sx4_pols)) + (- (Tj1_zeta * x(idx_Tj1_polt)))); % nor4ririlc_r_it1.rclnor.polb_eq (EQUATION) % dx(idx_R67_polb) f(idx_R67_polb_eq) = ((Pnd_k2 * x(idx_Pnd_polo1fo2f)) + (- (R67_k_el * x(idx_R67_polb)))); % nor4raralc_r_it5.praranor.polo1fo2f_eq (EQUATION) % dx(idx_Pzb_polo1fo2f) f(idx_Pzb_polo1fo2f_eq) = ((Pzb_k1 * x(idx_P4i_pol_free) * x(idx_Pzb_o1fo2f)) + (- (Pzb_k_1 * x(idx_Pzb_polo1fo2f))) + (- (Pzb_k2 * x(idx_Pzb_polo1fo2f)))); % nor4raralc_r_it5.rclnor.polb_eq (EQUATION) % dx(idx_Rc2_polb) f(idx_Rc2_polb_eq) = ((Pzb_k2 * x(idx_Pzb_polo1fo2f)) + (- (Rc2_k_el * x(idx_Rc2_polb)))); % nor4ririlc_r_it0.tf.ra_eq (EQUATION) % dx(idx_Tgt_ra) f(idx_Tgt_ra_eq) = ((R0n_k2r * x(idx_R0n_rb1nb2n)) + (- (Tgt_k_el_r * x(idx_Tgt_ra)))); % nor4ririlc_r_it1.tf.ra_eq (EQUATION) % dx(idx_T6u_ra) f(idx_T6u_ra_eq) = ((R67_k2r * x(idx_R67_rb1nb2n)) + (- (T6u_k_el_r * x(idx_T6u_ra)))); % nor4riracc_r_it2.tf.ra_eq (EQUATION) % dx(idx_Tih_ra) f(idx_Tih_ra_eq) = ((Rqa_k2r * x(idx_Rqa_rb1nb2n)) + (- (Tih_k_el_r * x(idx_Tih_ra)))); % nor4rirall_r_it3.tf.ra_eq (EQUATION) % dx(idx_Twd_ra) f(idx_Twd_ra_eq) = ((Rdk_k2r * x(idx_Rdk_rb1nb2n)) + (- (Twd_k_el_r * x(idx_Twd_ra)))); % nor4raralc_r_it4.tf.ra_eq (EQUATION) % dx(idx_Tvf_ra) f(idx_Tvf_ra_eq) = ((R6h_k2r * x(idx_R6h_rb1nb2n)) + (- (Tvf_k_el_r * x(idx_Tvf_ra)))); % nor4raralc_r_it5.tf.ra_eq (EQUATION) % dx(idx_T10_ra) f(idx_T10_ra_eq) = ((Rc2_k2r * x(idx_Rc2_rb1nb2n)) + (- (T10_k_el_r * x(idx_T10_ra)))); % nor4riracc_r_it6.tf.ra_eq (EQUATION) % dx(idx_Tp8_ra) f(idx_Tp8_ra_eq) = ((Rcl_k2r * x(idx_Rcl_rb1nb2n)) + (- (Tp8_k_el_r * x(idx_Tp8_ra)))); % nor4rirall_r_it7.tf.ra_eq (EQUATION) % dx(idx_T34_ra) f(idx_T34_ra_eq) = ((Rkb_k2r * x(idx_Rkb_rb1nb2n)) + (- (T34_k_el_r * x(idx_T34_ra)))); % int_r_pool.fm_eq (EQUATION) % dx(idx_I9r_fm) f(idx_I9r_fm_eq) = ((2 * I9r_epsilon * x(idx_I9r_fd)) + (- (2 * I9r_delta * (x(idx_I9r_fm) ^ 2))) + (- (I9r_k_dm * x(idx_I9r_fm))) + (R0n_k_lkr24 * x(idx_R0n_b1fb2f)) + (R0n_k_lkr23 * x(idx_R0n_b1fb2n)) + (R0n_k_lkr22 * x(idx_R0n_b1nb2f)) + (Tgt_k_el_r * x(idx_Tgt_ra)) + (R67_k_lkr24 * x(idx_R67_b1fb2f)) + (R67_k_lkr23 * x(idx_R67_b1fb2n)) + (R67_k_lkr22 * x(idx_R67_b1nb2f)) + (T6u_k_el_r * x(idx_T6u_ra)) + (Rqa_k_lkr24 * x(idx_Rqa_b1fb2f)) + (Rqa_k_lkr23 * x(idx_Rqa_b1fb2n)) + (Rqa_k_lkr22 * x(idx_Rqa_b1nb2f)) + (Tih_k_el_r * x(idx_Tih_ra)) + (Rdk_k_lkr24 * x(idx_Rdk_b1fb2f)) + (Rdk_k_lkr23 * x(idx_Rdk_b1fb2n)) + (Rdk_k_lkr22 * x(idx_Rdk_b1nb2f)) + (Twd_k_el_r * x(idx_Twd_ra)) + (R6h_k_lkr24 * x(idx_R6h_b1fb2f)) + (R6h_k_lkr23 * x(idx_R6h_b1fb2n)) + (R6h_k_lkr22 * x(idx_R6h_b1nb2f)) + (Tvf_k_el_r * x(idx_Tvf_ra)) + (Rc2_k_lkr24 * x(idx_Rc2_b1fb2f)) + (Rc2_k_lkr23 * x(idx_Rc2_b1fb2n)) + (Rc2_k_lkr22 * x(idx_Rc2_b1nb2f)) + (T10_k_el_r * x(idx_T10_ra)) + (Rcl_k_lkr24 * x(idx_Rcl_b1fb2f)) + (Rcl_k_lkr23 * x(idx_Rcl_b1fb2n)) + (Rcl_k_lkr22 * x(idx_Rcl_b1nb2f)) + (Tp8_k_el_r * x(idx_Tp8_ra)) + (Rkb_k_lkr24 * x(idx_Rkb_b1fb2f)) + (Rkb_k_lkr23 * x(idx_Rkb_b1fb2n)) + (Rkb_k_lkr22 * x(idx_Rkb_b1nb2f)) + (T34_k_el_r * x(idx_T34_ra))); % nor1r_f_sf0.pranor.polo1f_eq (EQUATION) % dx(idx_Pas_polo1f) f(idx_Pas_polo1f_eq) = ((Pas_k1 * x(idx_P4i_pol_free) * x(idx_Pas_o1f)) + (- (Pas_k_1 * x(idx_Pas_polo1f))) + (- (Pas_k2 * x(idx_Pas_polo1f)))); % nor1r_f_sf0.pranor.o1f_eq (EQUATION) % dx(idx_Pas_o1f) f(idx_Pas_o1f_eq) = ((Pas_beta1 * x(idx_Pas_o1t)) + (Pas_k_d12 * x(idx_Pas_o1t)) + (Pas_k_1 * x(idx_Pas_polo1f)) + (Pas_k2 * x(idx_Pas_polo1f)) + (- (Pas_alpha1 * x(idx_I9r_fd) * x(idx_Pas_o1f))) + (- (Pas_k1 * x(idx_P4i_pol_free) * x(idx_Pas_o1f)))); % int_r_pool.fd_eq (EQUATION) % dx(idx_I9r_fd) f(idx_I9r_fd_eq) = ((I9r_delta * (x(idx_I9r_fm) ^ 2)) + (- (I9r_epsilon * x(idx_I9r_fd))) + (- (Pas_alpha1 * x(idx_I9r_fd) * x(idx_Pas_o1f))) + (Pas_beta1 * x(idx_Pas_o1t)) + (- (I9r_k_dd * x(idx_I9r_fd)))); % nor1r_f_sf0.pranor.o1t_eq (EQUATION) % dx(idx_Pas_o1t) f(idx_Pas_o1t_eq) = ((Pas_alpha1 * x(idx_I9r_fd) * x(idx_Pas_o1f)) + (- (Pas_beta1 * x(idx_Pas_o1t))) + (- (Pas_k_d12 * x(idx_Pas_o1t)))); % nor1r_f_sf0.r0.polb_eq (EQUATION) % dx(idx_R56_polb) f(idx_R56_polb_eq) = ((Pas_k2 * x(idx_Pas_polo1f)) + (- (R56_k_el * x(idx_R56_polb)))); % not0_ip0.p0not0pos.p_free_eq (EQUATION) % dx(idx_Ps2_p_free) f(idx_Ps2_p_free_eq) = ((Ps2_k_1 * x(idx_Ps2_ppol)) + (Ps2_k2 * x(idx_Ps2_ppol)) + (- (Ps2_k1 * x(idx_P4i_pol_free) * x(idx_Ps2_p_free)))); % not0_ip0.p0not0pos.ppol_eq (EQUATION) % dx(idx_Ps2_ppol) f(idx_Ps2_ppol_eq) = ((Ps2_k1 * x(idx_P4i_pol_free) * x(idx_Ps2_p_free)) + (- (Ps2_k_1 * x(idx_Ps2_ppol))) + (- (Ps2_k2 * x(idx_Ps2_ppol)))); % not0_ip0.r0.polb_eq (EQUATION) % dx(idx_Ryb_polb) f(idx_Ryb_polb_eq) = ((Ps2_k2 * x(idx_Ps2_ppol)) + (- (Ryb_k_el * x(idx_Ryb_polb)))); % not0_ip0.r0_2.polb_eq (EQUATION) % dx(idx_R52_polb) f(idx_R52_polb_eq) = ((P9k_k2 * x(idx_P9k_polo1f)) + (- (R52_k_el * x(idx_R52_polb)))); % not0_ip0.r0_2.rb_eq (EQUATION) % dx(idx_R52_rb) f(idx_R52_rb_eq) = ((R52_k1r * x(idx_Rxm_r_free) * x(idx_R52_b_free)) + (- (R52_k_1r * x(idx_R52_rb))) + (- (R52_k2r * x(idx_R52_rb))) + (- (R52_k_drb * x(idx_R52_rb)))); % not0_ip0.r0_2.b_free_eq (EQUATION) % dx(idx_R52_b_free) f(idx_R52_b_free_eq) = ((R52_k_el * x(idx_R52_polb)) + (R52_k_1r * x(idx_R52_rb)) + (R52_k2r * x(idx_R52_rb)) + (- (R52_k1r * x(idx_Rxm_r_free) * x(idx_R52_b_free))) + (- (R52_k_db * x(idx_R52_b_free))) + (P9k_k12_lk * x(idx_P9k_o1t))); % not0_ip1.r0_2.polb_eq (EQUATION) % dx(idx_Raw_polb) f(idx_Raw_polb_eq) = ((Pfe_k2 * x(idx_Pfe_polo1f)) + (- (Raw_k_el * x(idx_Raw_polb)))); % nor4raralc_r_it5.tf.ru_eq (EQUATION) % dx(idx_T10_ru) f(idx_T10_ru_eq) = ((T10_k_el_r * x(idx_T10_ra)) + (- (T10_zeta_r * x(idx_T10_ru)))); % nor4riracc_r_it6.tf.ru_eq (EQUATION) % dx(idx_Tp8_ru) f(idx_Tp8_ru_eq) = ((Tp8_k_el_r * x(idx_Tp8_ra)) + (- (Tp8_zeta_r * x(idx_Tp8_ru)))); % nor4rirall_r_it7.tf.ru_eq (EQUATION) % dx(idx_T34_ru) f(idx_T34_ru_eq) = ((T34_k_el_r * x(idx_T34_ra)) + (- (T34_zeta_r * x(idx_T34_ru)))); % nor1r_f_sf0.fp.ra_eq (EQUATION) % dx(idx_F3m_ra) f(idx_F3m_ra_eq) = ((R56_k2r * x(idx_R56_rb)) + (- (F3m_k_el_r * x(idx_F3m_ra)))); % nor1r_f_sf0.fp.ru_eq (EQUATION) % dx(idx_F3m_ru) f(idx_F3m_ru_eq) = ((F3m_k_el_r * x(idx_F3m_ra)) + (- (F3m_zeta_r * x(idx_F3m_ru)))); % not0_ip0.tf.ra_eq (EQUATION) % dx(idx_Tm2_ra) f(idx_Tm2_ra_eq) = ((Ryb_k2r * x(idx_Ryb_rb)) + (- (Tm2_k_el_r * x(idx_Tm2_ra)))); % not0_ip0.tf.ru_eq (EQUATION) % dx(idx_Tm2_ru) f(idx_Tm2_ru_eq) = ((Tm2_k_el_r * x(idx_Tm2_ra)) + (- (Tm2_zeta_r * x(idx_Tm2_ru)))); % not0_ip0.tf_2.ra_eq (EQUATION) % dx(idx_Tst_ra) f(idx_Tst_ra_eq) = ((R52_k2r * x(idx_R52_rb)) + (- (Tst_k_el_r * x(idx_Tst_ra)))); % not0_ip0.tf_2.ru_eq (EQUATION) % dx(idx_Tst_ru) f(idx_Tst_ru_eq) = ((Tst_k_el_r * x(idx_Tst_ra)) + (- (Tst_zeta_r * x(idx_Tst_ru)))); % not0_ip1.tf_2.ra_eq (EQUATION) % dx(idx_Tyn_ra) f(idx_Tyn_ra_eq) = ((Raw_k2r * x(idx_Raw_rb)) + (- (Tyn_k_el_r * x(idx_Tyn_ra)))); % not0_ip1.tf_2.ru_eq (EQUATION) % dx(idx_Tyn_ru) f(idx_Tyn_ru_eq) = ((Tyn_k_el_r * x(idx_Tyn_ra)) + (- (Tyn_zeta_r * x(idx_Tyn_ru)))); % not3_ip2.tf.ru_eq (EQUATION) % dx(idx_Tj2_ru) f(idx_Tj2_ru_eq) = ((Tj2_k_el_r * x(idx_Tj2_ra)) + (- (Tj2_zeta_r * x(idx_Tj2_ru)))); % not3_ip3.tf.ru_eq (EQUATION) % dx(idx_Tow_ru) f(idx_Tow_ru_eq) = ((Tow_k_el_r * x(idx_Tow_ra)) + (- (Tow_zeta_r * x(idx_Tow_ru)))); % nor4ririlc_r_it0.tf.ru_eq (EQUATION) % dx(idx_Tgt_ru) f(idx_Tgt_ru_eq) = ((Tgt_k_el_r * x(idx_Tgt_ra)) + (- (Tgt_zeta_r * x(idx_Tgt_ru)))); % nor4ririlc_r_it1.tf.ru_eq (EQUATION) % dx(idx_T6u_ru) f(idx_T6u_ru_eq) = ((T6u_k_el_r * x(idx_T6u_ra)) + (- (T6u_zeta_r * x(idx_T6u_ru)))); % nor4riracc_r_it2.tf.ru_eq (EQUATION) % dx(idx_Tih_ru) f(idx_Tih_ru_eq) = ((Tih_k_el_r * x(idx_Tih_ra)) + (- (Tih_zeta_r * x(idx_Tih_ru)))); % nor4rirall_r_it3.tf.ru_eq (EQUATION) % dx(idx_Twd_ru) f(idx_Twd_ru_eq) = ((Twd_k_el_r * x(idx_Twd_ra)) + (- (Twd_zeta_r * x(idx_Twd_ru)))); % nor4raralc_r_it4.tf.ru_eq (EQUATION) % dx(idx_Tvf_ru) f(idx_Tvf_ru_eq) = ((Tvf_k_el_r * x(idx_Tvf_ra)) + (- (Tvf_zeta_r * x(idx_Tvf_ru)))); % not0_ip1.p0not0pos.p_free_eq (EQUATION) % dx(idx_Pxw_p_free) f(idx_Pxw_p_free_eq) = ((Pxw_k_1 * x(idx_Pxw_ppol)) + (Pxw_k2 * x(idx_Pxw_ppol)) + (- (Pxw_k1 * x(idx_P4i_pol_free) * x(idx_Pxw_p_free)))); % not0_ip1.p0not0pos.ppol_eq (EQUATION) % dx(idx_Pxw_ppol) f(idx_Pxw_ppol_eq) = ((Pxw_k1 * x(idx_P4i_pol_free) * x(idx_Pxw_p_free)) + (- (Pxw_k_1 * x(idx_Pxw_ppol))) + (- (Pxw_k2 * x(idx_Pxw_ppol)))); % not0_ip1.r0.polb_eq (EQUATION) % dx(idx_R45_polb) f(idx_R45_polb_eq) = ((Pxw_k2 * x(idx_Pxw_ppol)) + (- (R45_k_el * x(idx_R45_polb)))); % not0_ip1.tf.ru_eq (EQUATION) % dx(idx_Trw_ru) f(idx_Trw_ru_eq) = ((Trw_k_el_r * x(idx_Trw_ra)) + (- (Trw_zeta_r * x(idx_Trw_ru)))); % not0_ip1.r0_2.rb_eq (EQUATION) % dx(idx_Raw_rb) f(idx_Raw_rb_eq) = ((Raw_k1r * x(idx_Rxm_r_free) * x(idx_Raw_b_free)) + (- (Raw_k_1r * x(idx_Raw_rb))) + (- (Raw_k2r * x(idx_Raw_rb))) + (- (Raw_k_drb * x(idx_Raw_rb)))); % not0_ip1.r0_2.b_free_eq (EQUATION) % dx(idx_Raw_b_free) f(idx_Raw_b_free_eq) = ((Raw_k_el * x(idx_Raw_polb)) + (Raw_k_1r * x(idx_Raw_rb)) + (Raw_k2r * x(idx_Raw_rb)) + (- (Raw_k1r * x(idx_Rxm_r_free) * x(idx_Raw_b_free))) + (- (Raw_k_db * x(idx_Raw_b_free))) + (Pfe_k12_lk * x(idx_Pfe_o1t))); % not0_ip0.r0.rb_eq (EQUATION) % dx(idx_Ryb_rb) f(idx_Ryb_rb_eq) = ((Ryb_k1r * x(idx_Rxm_r_free) * x(idx_Ryb_b_free)) + (- (Ryb_k_1r * x(idx_Ryb_rb))) + (- (Ryb_k2r * x(idx_Ryb_rb))) + (- (Ryb_k_drb * x(idx_Ryb_rb)))); % not0_ip0.r0.b_free_eq (EQUATION) % dx(idx_Ryb_b_free) f(idx_Ryb_b_free_eq) = ((Ryb_k_el * x(idx_Ryb_polb)) + (Ryb_k_1r * x(idx_Ryb_rb)) + (Ryb_k2r * x(idx_Ryb_rb)) + (- (Ryb_k1r * x(idx_Rxm_r_free) * x(idx_Ryb_b_free))) + (- (Ryb_k_db * x(idx_Ryb_b_free)))); % nor1r_f_sf0.r0.rb_eq (EQUATION) % dx(idx_R56_rb) f(idx_R56_rb_eq) = ((R56_k1r * x(idx_Rxm_r_free) * x(idx_R56_b_free)) + (- (R56_k_1r * x(idx_R56_rb))) + (- (R56_k2r * x(idx_R56_rb))) + (- (R56_k_drb * x(idx_R56_rb)))); % nor1r_f_sf0.r0.b_free_eq (EQUATION) % dx(idx_R56_b_free) f(idx_R56_b_free_eq) = ((R56_k_el * x(idx_R56_polb)) + (R56_k_1r * x(idx_R56_rb)) + (R56_k2r * x(idx_R56_rb)) + (- (R56_k1r * x(idx_Rxm_r_free) * x(idx_R56_b_free))) + (- (R56_k_db * x(idx_R56_b_free))) + (Pas_k12_lk * x(idx_Pas_o1t))); % nor4raralc_r_it5.rclnor.rb1nb2n_eq (EQUATION) % dx(idx_Rc2_rb1nb2n) f(idx_Rc2_rb1nb2n_eq) = ((Rc2_k1r * x(idx_Rxm_r_free) * x(idx_Rc2_b1nb2n)) + (- (Rc2_k_1r * x(idx_Rc2_rb1nb2n))) + (- (Rc2_k2r * x(idx_Rc2_rb1nb2n))) + (- (Rc2_k_dr1 * x(idx_Rc2_rb1nb2n)))); % nor4raralc_r_it5.praranor.o1to2f_eq (EQUATION) % dx(idx_Pzb_o1to2f) f(idx_Pzb_o1to2f_eq) = ((Pzb_alpha1f * x(idx_Ach_fd) * x(idx_Pzb_o1fo2f)) + (Pzb_beta2t * x(idx_Pzb_o1to2t)) + (Pzb_k_d24 * x(idx_Pzb_o1to2t)) + (- (Pzb_beta1f * x(idx_Pzb_o1to2f))) + (- (Pzb_alpha2t * x(idx_Bci_fd) * x(idx_Pzb_o1to2f))) + (- (Pzb_k_d13 * x(idx_Pzb_o1to2f)))); % nor4raralc_r_it5.praranor.o1to2t_eq (EQUATION) % dx(idx_Pzb_o1to2t) f(idx_Pzb_o1to2t_eq) = ((Pzb_alpha1t * x(idx_Ach_fd) * x(idx_Pzb_o1fo2t)) + (Pzb_alpha2t * x(idx_Bci_fd) * x(idx_Pzb_o1to2f)) + (- (Pzb_beta1t * x(idx_Pzb_o1to2t))) + (- (Pzb_beta2t * x(idx_Pzb_o1to2t))) + (- (Pzb_k_d14 * x(idx_Pzb_o1to2t))) + (- (Pzb_k_d24 * x(idx_Pzb_o1to2t)))); % nor4raralc_r_it5.praranor.o1fo2t_eq (EQUATION) % dx(idx_Pzb_o1fo2t) f(idx_Pzb_o1fo2t_eq) = ((Pzb_beta1t * x(idx_Pzb_o1to2t)) + (Pzb_alpha2f * x(idx_Bci_fd) * x(idx_Pzb_o1fo2f)) + (Pzb_k_d14 * x(idx_Pzb_o1to2t)) + (- (Pzb_alpha1t * x(idx_Ach_fd) * x(idx_Pzb_o1fo2t))) + (- (Pzb_beta2f * x(idx_Pzb_o1fo2t))) + (- (Pzb_k_d22 * x(idx_Pzb_o1fo2t)))); % nor4ririlc_r_it1.rclnor.rb1nb2n_eq (EQUATION) % dx(idx_R67_rb1nb2n) f(idx_R67_rb1nb2n_eq) = ((R67_k1r * x(idx_Rxm_r_free) * x(idx_R67_b1nb2n)) + (- (R67_k_1r * x(idx_R67_rb1nb2n))) + (- (R67_k2r * x(idx_R67_rb1nb2n))) + (- (R67_k_dr1 * x(idx_R67_rb1nb2n)))); % nor4rirall_r_it3.rllnor.rb1nb2n_eq (EQUATION) % dx(idx_Rdk_rb1nb2n) f(idx_Rdk_rb1nb2n_eq) = ((Rdk_k1r * x(idx_Rxm_r_free) * x(idx_Rdk_b1nb2n)) + (- (Rdk_k_1r * x(idx_Rdk_rb1nb2n))) + (- (Rdk_k2r * x(idx_Rdk_rb1nb2n))) + (- (Rdk_k_dr1 * x(idx_Rdk_rb1nb2n)))); % nor4rirall_r_it3.priranor.polo1fo2f_eq (EQUATION) % dx(idx_Ps3_polo1fo2f) f(idx_Ps3_polo1fo2f_eq) = ((Ps3_k1 * x(idx_P4i_pol_free) * x(idx_Ps3_o1fo2f)) + (- (Ps3_k_1 * x(idx_Ps3_polo1fo2f))) + (- (Ps3_k2 * x(idx_Ps3_polo1fo2f)))); % nor4rirall_r_it3.priranor.o1to2t_eq (EQUATION) % dx(idx_Ps3_o1to2t) f(idx_Ps3_o1to2t_eq) = ((Ps3_alpha1t * x(idx_Agz_fd) * x(idx_Ps3_o1fo2t)) + (Ps3_alpha2t * x(idx_Bci_fd) * x(idx_Ps3_o1to2f)) + (- (Ps3_beta1t * x(idx_Ps3_o1to2t))) + (- (Ps3_beta2t * x(idx_Ps3_o1to2t))) + (- (Ps3_k_d14 * x(idx_Ps3_o1to2t))) + (- (Ps3_k_d24 * x(idx_Ps3_o1to2t)))); % nor4rirall_r_it3.priranor.o1to2f_eq (EQUATION) % dx(idx_Ps3_o1to2f) f(idx_Ps3_o1to2f_eq) = ((Ps3_alpha1f * x(idx_Agz_fd) * x(idx_Ps3_o1fo2f)) + (Ps3_beta2t * x(idx_Ps3_o1to2t)) + (Ps3_k_d24 * x(idx_Ps3_o1to2t)) + (- (Ps3_beta1f * x(idx_Ps3_o1to2f))) + (- (Ps3_alpha2t * x(idx_Bci_fd) * x(idx_Ps3_o1to2f))) + (- (Ps3_k_d13 * x(idx_Ps3_o1to2f)))); % nor4rirall_r_it3.priranor.o1fo2f_eq (EQUATION) % dx(idx_Ps3_o1fo2f) f(idx_Ps3_o1fo2f_eq) = ((Ps3_beta1f * x(idx_Ps3_o1to2f)) + (Ps3_beta2f * x(idx_Ps3_o1fo2t)) + (Ps3_k_d13 * x(idx_Ps3_o1to2f)) + (Ps3_k_d22 * x(idx_Ps3_o1fo2t)) + (Ps3_k_1 * x(idx_Ps3_polo1fo2f)) + (Ps3_k2 * x(idx_Ps3_polo1fo2f)) + (- (Ps3_alpha1f * x(idx_Agz_fd) * x(idx_Ps3_o1fo2f))) + (- (Ps3_alpha2f * x(idx_Bci_fd) * x(idx_Ps3_o1fo2f))) + (- (Ps3_k1 * x(idx_P4i_pol_free) * x(idx_Ps3_o1fo2f)))); % nor4rirall_r_it3.priranor.o1fo2t_eq (EQUATION) % dx(idx_Ps3_o1fo2t) f(idx_Ps3_o1fo2t_eq) = ((Ps3_beta1t * x(idx_Ps3_o1to2t)) + (Ps3_alpha2f * x(idx_Bci_fd) * x(idx_Ps3_o1fo2f)) + (Ps3_k_d14 * x(idx_Ps3_o1to2t)) + (- (Ps3_alpha1t * x(idx_Agz_fd) * x(idx_Ps3_o1fo2t))) + (- (Ps3_beta2f * x(idx_Ps3_o1fo2t))) + (- (Ps3_k_d22 * x(idx_Ps3_o1fo2t)))); % nor4rirall_r_it7.rllnor.rb1nb2n_eq (EQUATION) % dx(idx_Rkb_rb1nb2n) f(idx_Rkb_rb1nb2n_eq) = ((Rkb_k1r * x(idx_Rxm_r_free) * x(idx_Rkb_b1nb2n)) + (- (Rkb_k_1r * x(idx_Rkb_rb1nb2n))) + (- (Rkb_k2r * x(idx_Rkb_rb1nb2n))) + (- (Rkb_k_dr1 * x(idx_Rkb_rb1nb2n)))); % nor4rirall_r_it7.rllnor.b1nb2f_eq (EQUATION) % dx(idx_Rkb_b1nb2f) f(idx_Rkb_b1nb2f_eq) = ((Rkb_csi1f * x(idx_Rkb_b1fb2f)) + (- (Rkb_theta1f * x(idx_Ccj_srna_free) * x(idx_Rkb_b1nb2f))) + (Rkb_theta2n * x(idx_Dck_srna_free) * x(idx_Rkb_b1nb2n)) + (- (Rkb_csi2n * x(idx_Rkb_b1nb2f))) + (- (Rkb_kd2 * x(idx_Rkb_b1nb2f)))); % nor4rirall_r_it7.rllnor.b1nb2n_eq (EQUATION) % dx(idx_Rkb_b1nb2n) f(idx_Rkb_b1nb2n_eq) = ((Rkb_csi1n * x(idx_Rkb_b1fb2n)) + (- (Rkb_theta1n * x(idx_Ccj_srna_free) * x(idx_Rkb_b1nb2n))) + (Rkb_csi2n * x(idx_Rkb_b1nb2f)) + (- (Rkb_theta2n * x(idx_Dck_srna_free) * x(idx_Rkb_b1nb2n))) + (- (Rkb_kd1 * x(idx_Rkb_b1nb2n))) + (- (Rkb_k1r * x(idx_Rxm_r_free) * x(idx_Rkb_b1nb2n))) + (Rkb_k_1r * x(idx_Rkb_rb1nb2n)) + (Rkb_k2r * x(idx_Rkb_rb1nb2n)) + (Rkb_k_el * x(idx_Rkb_polb)) + (Pn6_k24_lk * x(idx_Pn6_o1to2t)) + (Pn6_k23_lk * x(idx_Pn6_o1to2f)) + (Pn6_k22_lk * x(idx_Pn6_o1fo2t))); % nor4rirall_r_it7.rllnor.b1fb2n_eq (EQUATION) % dx(idx_Rkb_b1fb2n) f(idx_Rkb_b1fb2n_eq) = ((Rkb_theta1n * x(idx_Ccj_srna_free) * x(idx_Rkb_b1nb2n)) + (- (Rkb_csi1n * x(idx_Rkb_b1fb2n))) + (Rkb_csi2f * x(idx_Rkb_b1fb2f)) + (- (Rkb_theta2f * x(idx_Dck_srna_free) * x(idx_Rkb_b1fb2n))) + (- (Rkb_kd3 * x(idx_Rkb_b1fb2n)))); % nor4rirall_r_it7.rllnor.b1fb2f_eq (EQUATION) % dx(idx_Rkb_b1fb2f) f(idx_Rkb_b1fb2f_eq) = ((Rkb_theta1f * x(idx_Ccj_srna_free) * x(idx_Rkb_b1nb2f)) + (- (Rkb_csi1f * x(idx_Rkb_b1fb2f))) + (Rkb_theta2f * x(idx_Dck_srna_free) * x(idx_Rkb_b1fb2n)) + (- (Rkb_csi2f * x(idx_Rkb_b1fb2f))) + (- (Rkb_kd4 * x(idx_Rkb_b1fb2f)))); % nor4ririlc_r_it0.rclnor.rb1nb2n_eq (EQUATION) % dx(idx_R0n_rb1nb2n) f(idx_R0n_rb1nb2n_eq) = ((R0n_k1r * x(idx_Rxm_r_free) * x(idx_R0n_b1nb2n)) + (- (R0n_k_1r * x(idx_R0n_rb1nb2n))) + (- (R0n_k2r * x(idx_R0n_rb1nb2n))) + (- (R0n_k_dr1 * x(idx_R0n_rb1nb2n)))); % nor4riracc_r_it6.rccnor.rb1nb2n_eq (EQUATION) % dx(idx_Rcl_rb1nb2n) f(idx_Rcl_rb1nb2n_eq) = ((Rcl_k1r * x(idx_Rxm_r_free) * x(idx_Rcl_b1nb2n)) + (- (Rcl_k_1r * x(idx_Rcl_rb1nb2n))) + (- (Rcl_k2r * x(idx_Rcl_rb1nb2n))) + (- (Rcl_k_dr1 * x(idx_Rcl_rb1nb2n)))); % nor4riracc_r_it6.rccnor.b1nb2f_eq (EQUATION) % dx(idx_Rcl_b1nb2f) f(idx_Rcl_b1nb2f_eq) = ((Rcl_csi1f * x(idx_Rcl_b1fb2f)) + (- (Rcl_theta1f * x(idx_C5e_sig_free) * x(idx_Rcl_b1nb2f))) + (Rcl_theta2n * x(idx_D5f_sig_free) * x(idx_Rcl_b1nb2n)) + (- (Rcl_csi2n * x(idx_Rcl_b1nb2f))) + (- (Rcl_kd2 * x(idx_Rcl_b1nb2f)))); % nor4riracc_r_it6.rccnor.b1nb2n_eq (EQUATION) % dx(idx_Rcl_b1nb2n) f(idx_Rcl_b1nb2n_eq) = ((Rcl_csi1n * x(idx_Rcl_b1fb2n)) + (- (Rcl_theta1n * x(idx_C5e_sig_free) * x(idx_Rcl_b1nb2n))) + (Rcl_csi2n * x(idx_Rcl_b1nb2f)) + (- (Rcl_theta2n * x(idx_D5f_sig_free) * x(idx_Rcl_b1nb2n))) + (- (Rcl_kd1 * x(idx_Rcl_b1nb2n))) + (- (Rcl_k1r * x(idx_Rxm_r_free) * x(idx_Rcl_b1nb2n))) + (Rcl_k_1r * x(idx_Rcl_rb1nb2n)) + (Rcl_k2r * x(idx_Rcl_rb1nb2n)) + (Rcl_k_el * x(idx_Rcl_polb)) + (P9b_k24_lk * x(idx_P9b_o1to2t)) + (P9b_k23_lk * x(idx_P9b_o1to2f)) + (P9b_k22_lk * x(idx_P9b_o1fo2t))); % nor4riracc_r_it6.rccnor.b1fb2n_eq (EQUATION) % dx(idx_Rcl_b1fb2n) f(idx_Rcl_b1fb2n_eq) = ((Rcl_theta1n * x(idx_C5e_sig_free) * x(idx_Rcl_b1nb2n)) + (- (Rcl_csi1n * x(idx_Rcl_b1fb2n))) + (Rcl_csi2f * x(idx_Rcl_b1fb2f)) + (- (Rcl_theta2f * x(idx_D5f_sig_free) * x(idx_Rcl_b1fb2n))) + (- (Rcl_kd3 * x(idx_Rcl_b1fb2n)))); % nor4riracc_r_it6.rccnor.b1fb2f_eq (EQUATION) % dx(idx_Rcl_b1fb2f) f(idx_Rcl_b1fb2f_eq) = ((Rcl_theta1f * x(idx_C5e_sig_free) * x(idx_Rcl_b1nb2f)) + (- (Rcl_csi1f * x(idx_Rcl_b1fb2f))) + (Rcl_theta2f * x(idx_D5f_sig_free) * x(idx_Rcl_b1fb2n)) + (- (Rcl_csi2f * x(idx_Rcl_b1fb2f))) + (- (Rcl_kd4 * x(idx_Rcl_b1fb2f)))); % nor4raralc_r_it4.rclnor.rb1nb2n_eq (EQUATION) % dx(idx_R6h_rb1nb2n) f(idx_R6h_rb1nb2n_eq) = ((R6h_k1r * x(idx_Rxm_r_free) * x(idx_R6h_b1nb2n)) + (- (R6h_k_1r * x(idx_R6h_rb1nb2n))) + (- (R6h_k2r * x(idx_R6h_rb1nb2n))) + (- (R6h_k_dr1 * x(idx_R6h_rb1nb2n)))); % nor4raralc_r_it4.praranor.o1to2f_eq (EQUATION) % dx(idx_P5e_o1to2f) f(idx_P5e_o1to2f_eq) = ((P5e_alpha1f * x(idx_Ach_fd) * x(idx_P5e_o1fo2f)) + (P5e_beta2t * x(idx_P5e_o1to2t)) + (P5e_k_d24 * x(idx_P5e_o1to2t)) + (- (P5e_beta1f * x(idx_P5e_o1to2f))) + (- (P5e_alpha2t * x(idx_Bci_fd) * x(idx_P5e_o1to2f))) + (- (P5e_k_d13 * x(idx_P5e_o1to2f)))); % nor4raralc_r_it4.praranor.o1to2t_eq (EQUATION) % dx(idx_P5e_o1to2t) f(idx_P5e_o1to2t_eq) = ((P5e_alpha1t * x(idx_Ach_fd) * x(idx_P5e_o1fo2t)) + (P5e_alpha2t * x(idx_Bci_fd) * x(idx_P5e_o1to2f)) + (- (P5e_beta1t * x(idx_P5e_o1to2t))) + (- (P5e_beta2t * x(idx_P5e_o1to2t))) + (- (P5e_k_d14 * x(idx_P5e_o1to2t))) + (- (P5e_k_d24 * x(idx_P5e_o1to2t)))); % nor4raralc_r_it4.praranor.o1fo2t_eq (EQUATION) % dx(idx_P5e_o1fo2t) f(idx_P5e_o1fo2t_eq) = ((P5e_beta1t * x(idx_P5e_o1to2t)) + (P5e_alpha2f * x(idx_Bci_fd) * x(idx_P5e_o1fo2f)) + (P5e_k_d14 * x(idx_P5e_o1to2t)) + (- (P5e_alpha1t * x(idx_Ach_fd) * x(idx_P5e_o1fo2t))) + (- (P5e_beta2f * x(idx_P5e_o1fo2t))) + (- (P5e_k_d22 * x(idx_P5e_o1fo2t)))); % nor4raralc_r_it4.rclnor.b1nb2f_eq (EQUATION) % dx(idx_R6h_b1nb2f) f(idx_R6h_b1nb2f_eq) = ((R6h_csi1f * x(idx_R6h_b1fb2f)) + (- (R6h_theta1f * x(idx_C5e_sig_free) * x(idx_R6h_b1nb2f))) + (R6h_theta2n * x(idx_Dck_srna_free) * x(idx_R6h_b1nb2n)) + (- (R6h_csi2n * x(idx_R6h_b1nb2f))) + (- (R6h_kd2 * x(idx_R6h_b1nb2f)))); % nor4raralc_r_it4.rclnor.b1nb2n_eq (EQUATION) % dx(idx_R6h_b1nb2n) f(idx_R6h_b1nb2n_eq) = ((R6h_csi1n * x(idx_R6h_b1fb2n)) + (- (R6h_theta1n * x(idx_C5e_sig_free) * x(idx_R6h_b1nb2n))) + (R6h_csi2n * x(idx_R6h_b1nb2f)) + (- (R6h_theta2n * x(idx_Dck_srna_free) * x(idx_R6h_b1nb2n))) + (- (R6h_kd1 * x(idx_R6h_b1nb2n))) + (- (R6h_k1r * x(idx_Rxm_r_free) * x(idx_R6h_b1nb2n))) + (R6h_k_1r * x(idx_R6h_rb1nb2n)) + (R6h_k2r * x(idx_R6h_rb1nb2n)) + (R6h_k_el * x(idx_R6h_polb)) + (P5e_k24_lk * x(idx_P5e_o1to2t)) + (P5e_k23_lk * x(idx_P5e_o1to2f)) + (P5e_k22_lk * x(idx_P5e_o1fo2t))); % nor4raralc_r_it4.rclnor.b1fb2n_eq (EQUATION) % dx(idx_R6h_b1fb2n) f(idx_R6h_b1fb2n_eq) = ((R6h_theta1n * x(idx_C5e_sig_free) * x(idx_R6h_b1nb2n)) + (- (R6h_csi1n * x(idx_R6h_b1fb2n))) + (R6h_csi2f * x(idx_R6h_b1fb2f)) + (- (R6h_theta2f * x(idx_Dck_srna_free) * x(idx_R6h_b1fb2n))) + (- (R6h_kd3 * x(idx_R6h_b1fb2n)))); % nor4raralc_r_it4.rclnor.b1fb2f_eq (EQUATION) % dx(idx_R6h_b1fb2f) f(idx_R6h_b1fb2f_eq) = ((R6h_theta1f * x(idx_C5e_sig_free) * x(idx_R6h_b1nb2f)) + (- (R6h_csi1f * x(idx_R6h_b1fb2f))) + (R6h_theta2f * x(idx_Dck_srna_free) * x(idx_R6h_b1fb2n)) + (- (R6h_csi2f * x(idx_R6h_b1fb2f))) + (- (R6h_kd4 * x(idx_R6h_b1fb2f)))); % nor4riracc_r_it2.rccnor.rb1nb2n_eq (EQUATION) % dx(idx_Rqa_rb1nb2n) f(idx_Rqa_rb1nb2n_eq) = ((Rqa_k1r * x(idx_Rxm_r_free) * x(idx_Rqa_b1nb2n)) + (- (Rqa_k_1r * x(idx_Rqa_rb1nb2n))) + (- (Rqa_k2r * x(idx_Rqa_rb1nb2n))) + (- (Rqa_k_dr1 * x(idx_Rqa_rb1nb2n)))); % nor4riracc_r_it2.priranor.o1to2f_eq (EQUATION) % dx(idx_Pe8_o1to2f) f(idx_Pe8_o1to2f_eq) = ((Pe8_alpha1f * x(idx_Agz_fd) * x(idx_Pe8_o1fo2f)) + (Pe8_beta2t * x(idx_Pe8_o1to2t)) + (Pe8_k_d24 * x(idx_Pe8_o1to2t)) + (- (Pe8_beta1f * x(idx_Pe8_o1to2f))) + (- (Pe8_alpha2t * x(idx_Bci_fd) * x(idx_Pe8_o1to2f))) + (- (Pe8_k_d13 * x(idx_Pe8_o1to2f)))); % nor4riracc_r_it2.priranor.o1to2t_eq (EQUATION) % dx(idx_Pe8_o1to2t) f(idx_Pe8_o1to2t_eq) = ((Pe8_alpha1t * x(idx_Agz_fd) * x(idx_Pe8_o1fo2t)) + (Pe8_alpha2t * x(idx_Bci_fd) * x(idx_Pe8_o1to2f)) + (- (Pe8_beta1t * x(idx_Pe8_o1to2t))) + (- (Pe8_beta2t * x(idx_Pe8_o1to2t))) + (- (Pe8_k_d14 * x(idx_Pe8_o1to2t))) + (- (Pe8_k_d24 * x(idx_Pe8_o1to2t)))); % nor4riracc_r_it2.priranor.o1fo2t_eq (EQUATION) % dx(idx_Pe8_o1fo2t) f(idx_Pe8_o1fo2t_eq) = ((Pe8_beta1t * x(idx_Pe8_o1to2t)) + (Pe8_alpha2f * x(idx_Bci_fd) * x(idx_Pe8_o1fo2f)) + (Pe8_k_d14 * x(idx_Pe8_o1to2t)) + (- (Pe8_alpha1t * x(idx_Agz_fd) * x(idx_Pe8_o1fo2t))) + (- (Pe8_beta2f * x(idx_Pe8_o1fo2t))) + (- (Pe8_k_d22 * x(idx_Pe8_o1fo2t)))); % nor4riracc_r_it2.rccnor.b1nb2f_eq (EQUATION) % dx(idx_Rqa_b1nb2f) f(idx_Rqa_b1nb2f_eq) = ((Rqa_csi1f * x(idx_Rqa_b1fb2f)) + (- (Rqa_theta1f * x(idx_C5e_sig_free) * x(idx_Rqa_b1nb2f))) + (Rqa_theta2n * x(idx_D5f_sig_free) * x(idx_Rqa_b1nb2n)) + (- (Rqa_csi2n * x(idx_Rqa_b1nb2f))) + (- (Rqa_kd2 * x(idx_Rqa_b1nb2f)))); % nor4riracc_r_it2.rccnor.b1nb2n_eq (EQUATION) % dx(idx_Rqa_b1nb2n) f(idx_Rqa_b1nb2n_eq) = ((Rqa_csi1n * x(idx_Rqa_b1fb2n)) + (- (Rqa_theta1n * x(idx_C5e_sig_free) * x(idx_Rqa_b1nb2n))) + (Rqa_csi2n * x(idx_Rqa_b1nb2f)) + (- (Rqa_theta2n * x(idx_D5f_sig_free) * x(idx_Rqa_b1nb2n))) + (- (Rqa_kd1 * x(idx_Rqa_b1nb2n))) + (- (Rqa_k1r * x(idx_Rxm_r_free) * x(idx_Rqa_b1nb2n))) + (Rqa_k_1r * x(idx_Rqa_rb1nb2n)) + (Rqa_k2r * x(idx_Rqa_rb1nb2n)) + (Rqa_k_el * x(idx_Rqa_polb)) + (Pe8_k24_lk * x(idx_Pe8_o1to2t)) + (Pe8_k23_lk * x(idx_Pe8_o1to2f)) + (Pe8_k22_lk * x(idx_Pe8_o1fo2t))); % nor4riracc_r_it2.rccnor.b1fb2n_eq (EQUATION) % dx(idx_Rqa_b1fb2n) f(idx_Rqa_b1fb2n_eq) = ((Rqa_theta1n * x(idx_C5e_sig_free) * x(idx_Rqa_b1nb2n)) + (- (Rqa_csi1n * x(idx_Rqa_b1fb2n))) + (Rqa_csi2f * x(idx_Rqa_b1fb2f)) + (- (Rqa_theta2f * x(idx_D5f_sig_free) * x(idx_Rqa_b1fb2n))) + (- (Rqa_kd3 * x(idx_Rqa_b1fb2n)))); % nor4riracc_r_it2.rccnor.b1fb2f_eq (EQUATION) % dx(idx_Rqa_b1fb2f) f(idx_Rqa_b1fb2f_eq) = ((Rqa_theta1f * x(idx_C5e_sig_free) * x(idx_Rqa_b1nb2f)) + (- (Rqa_csi1f * x(idx_Rqa_b1fb2f))) + (Rqa_theta2f * x(idx_D5f_sig_free) * x(idx_Rqa_b1fb2n)) + (- (Rqa_csi2f * x(idx_Rqa_b1fb2f))) + (- (Rqa_kd4 * x(idx_Rqa_b1fb2f)))); % not3_ip2.rcnot.rb1n_eq (EQUATION) % dx(idx_Rxb_rb1n) f(idx_Rxb_rb1n_eq) = ((Rxb_k1r * x(idx_Rxm_r_free) * x(idx_Rxb_b1n)) + (- (Rxb_k_1r * x(idx_Rxb_rb1n))) + (- (Rxb_k2r * x(idx_Rxb_rb1n))) + (- (Rxb_k_dr1 * x(idx_Rxb_rb1n)))); % not3_ip2.rcnot.b1n_eq (EQUATION) % dx(idx_Rxb_b1n) f(idx_Rxb_b1n_eq) = ((Rxb_csi1 * x(idx_Rxb_b1f)) + (- (Rxb_theta1 * x(idx_C5e_sig_free) * x(idx_Rxb_b1n))) + (- (Rxb_kd1 * x(idx_Rxb_b1n))) + (- (Rxb_k1r * x(idx_Rxm_r_free) * x(idx_Rxb_b1n))) + (Rxb_k_1r * x(idx_Rxb_rb1n)) + (Rxb_k2r * x(idx_Rxb_rb1n)) + (Rxb_k_el * x(idx_Rxb_polb))); % not3_ip2.rcnot.b1f_eq (EQUATION) % dx(idx_Rxb_b1f) f(idx_Rxb_b1f_eq) = ((Rxb_theta1 * x(idx_C5e_sig_free) * x(idx_Rxb_b1n)) + (- (Rxb_csi1 * x(idx_Rxb_b1f))) + (- (Rxb_kd2 * x(idx_Rxb_b1f)))); % c_pool.sig_free_eq (EQUATION) % dx(idx_C5e_sig_free) f(idx_C5e_sig_free_eq) = (C5e_k_s + (- (C5e_k_d * x(idx_C5e_sig_free))) + (- (Rxb_theta1 * x(idx_C5e_sig_free) * x(idx_Rxb_b1n))) + (Rxb_kd2 * x(idx_Rxb_b1f)) + (Rxb_csi1 * x(idx_Rxb_b1f)) + (- (R0n_theta1f * x(idx_C5e_sig_free) * x(idx_R0n_b1nb2f))) + (- (R0n_theta1n * x(idx_C5e_sig_free) * x(idx_R0n_b1nb2n))) + (R0n_kd4 * x(idx_R0n_b1fb2f)) + (R0n_csi1f * x(idx_R0n_b1fb2f)) + (R0n_kd3 * x(idx_R0n_b1fb2n)) + (R0n_csi1n * x(idx_R0n_b1fb2n)) + (- (Rqa_theta1f * x(idx_C5e_sig_free) * x(idx_Rqa_b1nb2f))) + (- (Rqa_theta1n * x(idx_C5e_sig_free) * x(idx_Rqa_b1nb2n))) + (Rqa_kd4 * x(idx_Rqa_b1fb2f)) + (Rqa_csi1f * x(idx_Rqa_b1fb2f)) + (Rqa_kd3 * x(idx_Rqa_b1fb2n)) + (Rqa_csi1n * x(idx_Rqa_b1fb2n)) + (- (R6h_theta1f * x(idx_C5e_sig_free) * x(idx_R6h_b1nb2f))) + (- (R6h_theta1n * x(idx_C5e_sig_free) * x(idx_R6h_b1nb2n))) + (R6h_kd4 * x(idx_R6h_b1fb2f)) + (R6h_csi1f * x(idx_R6h_b1fb2f)) + (R6h_kd3 * x(idx_R6h_b1fb2n)) + (R6h_csi1n * x(idx_R6h_b1fb2n)) + (- (Rcl_theta1f * x(idx_C5e_sig_free) * x(idx_Rcl_b1nb2f))) + (- (Rcl_theta1n * x(idx_C5e_sig_free) * x(idx_Rcl_b1nb2n))) + (Rcl_kd4 * x(idx_Rcl_b1fb2f)) + (Rcl_csi1f * x(idx_Rcl_b1fb2f)) + (Rcl_kd3 * x(idx_Rcl_b1fb2n)) + (Rcl_csi1n * x(idx_Rcl_b1fb2n))); % nor4ririlc_r_it0.rclnor.b1nb2f_eq (EQUATION) % dx(idx_R0n_b1nb2f) f(idx_R0n_b1nb2f_eq) = ((R0n_csi1f * x(idx_R0n_b1fb2f)) + (- (R0n_theta1f * x(idx_C5e_sig_free) * x(idx_R0n_b1nb2f))) + (R0n_theta2n * x(idx_Dck_srna_free) * x(idx_R0n_b1nb2n)) + (- (R0n_csi2n * x(idx_R0n_b1nb2f))) + (- (R0n_kd2 * x(idx_R0n_b1nb2f)))); % nor4ririlc_r_it0.rclnor.b1nb2n_eq (EQUATION) % dx(idx_R0n_b1nb2n) f(idx_R0n_b1nb2n_eq) = ((R0n_csi1n * x(idx_R0n_b1fb2n)) + (- (R0n_theta1n * x(idx_C5e_sig_free) * x(idx_R0n_b1nb2n))) + (R0n_csi2n * x(idx_R0n_b1nb2f)) + (- (R0n_theta2n * x(idx_Dck_srna_free) * x(idx_R0n_b1nb2n))) + (- (R0n_kd1 * x(idx_R0n_b1nb2n))) + (- (R0n_k1r * x(idx_Rxm_r_free) * x(idx_R0n_b1nb2n))) + (R0n_k_1r * x(idx_R0n_rb1nb2n)) + (R0n_k2r * x(idx_R0n_rb1nb2n)) + (R0n_k_el * x(idx_R0n_polb)) + (Pht_k24_lk * x(idx_Pht_o1to2t)) + (Pht_k23_lk * x(idx_Pht_o1to2f)) + (Pht_k22_lk * x(idx_Pht_o1fo2t))); % nor4ririlc_r_it0.rclnor.b1fb2n_eq (EQUATION) % dx(idx_R0n_b1fb2n) f(idx_R0n_b1fb2n_eq) = ((R0n_theta1n * x(idx_C5e_sig_free) * x(idx_R0n_b1nb2n)) + (- (R0n_csi1n * x(idx_R0n_b1fb2n))) + (R0n_csi2f * x(idx_R0n_b1fb2f)) + (- (R0n_theta2f * x(idx_Dck_srna_free) * x(idx_R0n_b1fb2n))) + (- (R0n_kd3 * x(idx_R0n_b1fb2n)))); % nor4ririlc_r_it0.rclnor.b1fb2f_eq (EQUATION) % dx(idx_R0n_b1fb2f) f(idx_R0n_b1fb2f_eq) = ((R0n_theta1f * x(idx_C5e_sig_free) * x(idx_R0n_b1nb2f)) + (- (R0n_csi1f * x(idx_R0n_b1fb2f))) + (R0n_theta2f * x(idx_Dck_srna_free) * x(idx_R0n_b1fb2n)) + (- (R0n_csi2f * x(idx_R0n_b1fb2f))) + (- (R0n_kd4 * x(idx_R0n_b1fb2f)))); % d_neg_pool.srna_free_eq (EQUATION) % dx(idx_Dck_srna_free) f(idx_Dck_srna_free_eq) = ((Prq_k11_lk * x(idx_Prq_o1f)) + (Tov_zeta * x(idx_Tov_polt)) + (- (R0n_theta2n * x(idx_Dck_srna_free) * x(idx_R0n_b1nb2n))) + (R0n_csi2f * x(idx_R0n_b1fb2f)) + (- (R0n_theta2f * x(idx_Dck_srna_free) * x(idx_R0n_b1fb2n))) + (R0n_csi2n * x(idx_R0n_b1nb2f)) + (- (Rdk_theta2n * x(idx_Dck_srna_free) * x(idx_Rdk_b1nb2n))) + (Rdk_csi2f * x(idx_Rdk_b1fb2f)) + (- (Rdk_theta2f * x(idx_Dck_srna_free) * x(idx_Rdk_b1fb2n))) + (Rdk_csi2n * x(idx_Rdk_b1nb2f)) + (- (R6h_theta2n * x(idx_Dck_srna_free) * x(idx_R6h_b1nb2n))) + (R6h_csi2f * x(idx_R6h_b1fb2f)) + (- (R6h_theta2f * x(idx_Dck_srna_free) * x(idx_R6h_b1fb2n))) + (R6h_csi2n * x(idx_R6h_b1nb2f)) + (- (Rkb_theta2n * x(idx_Dck_srna_free) * x(idx_Rkb_b1nb2n))) + (Rkb_csi2f * x(idx_Rkb_b1fb2f)) + (- (Rkb_theta2f * x(idx_Dck_srna_free) * x(idx_Rkb_b1fb2n))) + (Rkb_csi2n * x(idx_Rkb_b1nb2f)) + (- (Dck_k_dk * x(idx_Dck_srna_free)))); % nor4rirall_r_it3.rllnor.b1nb2f_eq (EQUATION) % dx(idx_Rdk_b1nb2f) f(idx_Rdk_b1nb2f_eq) = ((Rdk_csi1f * x(idx_Rdk_b1fb2f)) + (- (Rdk_theta1f * x(idx_Ccj_srna_free) * x(idx_Rdk_b1nb2f))) + (Rdk_theta2n * x(idx_Dck_srna_free) * x(idx_Rdk_b1nb2n)) + (- (Rdk_csi2n * x(idx_Rdk_b1nb2f))) + (- (Rdk_kd2 * x(idx_Rdk_b1nb2f)))); % nor4rirall_r_it3.rllnor.b1nb2n_eq (EQUATION) % dx(idx_Rdk_b1nb2n) f(idx_Rdk_b1nb2n_eq) = ((Rdk_csi1n * x(idx_Rdk_b1fb2n)) + (- (Rdk_theta1n * x(idx_Ccj_srna_free) * x(idx_Rdk_b1nb2n))) + (Rdk_csi2n * x(idx_Rdk_b1nb2f)) + (- (Rdk_theta2n * x(idx_Dck_srna_free) * x(idx_Rdk_b1nb2n))) + (- (Rdk_kd1 * x(idx_Rdk_b1nb2n))) + (- (Rdk_k1r * x(idx_Rxm_r_free) * x(idx_Rdk_b1nb2n))) + (Rdk_k_1r * x(idx_Rdk_rb1nb2n)) + (Rdk_k2r * x(idx_Rdk_rb1nb2n)) + (Rdk_k_el * x(idx_Rdk_polb)) + (Ps3_k24_lk * x(idx_Ps3_o1to2t)) + (Ps3_k23_lk * x(idx_Ps3_o1to2f)) + (Ps3_k22_lk * x(idx_Ps3_o1fo2t))); % nor4rirall_r_it3.rllnor.b1fb2n_eq (EQUATION) % dx(idx_Rdk_b1fb2n) f(idx_Rdk_b1fb2n_eq) = ((Rdk_theta1n * x(idx_Ccj_srna_free) * x(idx_Rdk_b1nb2n)) + (- (Rdk_csi1n * x(idx_Rdk_b1fb2n))) + (Rdk_csi2f * x(idx_Rdk_b1fb2f)) + (- (Rdk_theta2f * x(idx_Dck_srna_free) * x(idx_Rdk_b1fb2n))) + (- (Rdk_kd3 * x(idx_Rdk_b1fb2n)))); % nor4rirall_r_it3.rllnor.b1fb2f_eq (EQUATION) % dx(idx_Rdk_b1fb2f) f(idx_Rdk_b1fb2f_eq) = ((Rdk_theta1f * x(idx_Ccj_srna_free) * x(idx_Rdk_b1nb2f)) + (- (Rdk_csi1f * x(idx_Rdk_b1fb2f))) + (Rdk_theta2f * x(idx_Dck_srna_free) * x(idx_Rdk_b1fb2n)) + (- (Rdk_csi2f * x(idx_Rdk_b1fb2f))) + (- (Rdk_kd4 * x(idx_Rdk_b1fb2f)))); % c_neg_pool.srna_free_eq (EQUATION) % dx(idx_Ccj_srna_free) f(idx_Ccj_srna_free_eq) = ((Plw_k11_lk * x(idx_Plw_o1f)) + (Tj1_zeta * x(idx_Tj1_polt)) + (- (R67_theta2n * x(idx_Ccj_srna_free) * x(idx_R67_b1nb2n))) + (R67_csi2f * x(idx_R67_b1fb2f)) + (- (R67_theta2f * x(idx_Ccj_srna_free) * x(idx_R67_b1fb2n))) + (R67_csi2n * x(idx_R67_b1nb2f)) + (- (Rdk_theta1f * x(idx_Ccj_srna_free) * x(idx_Rdk_b1nb2f))) + (- (Rdk_theta1n * x(idx_Ccj_srna_free) * x(idx_Rdk_b1nb2n))) + (Rdk_csi1f * x(idx_Rdk_b1fb2f)) + (Rdk_csi1n * x(idx_Rdk_b1fb2n)) + (- (Rc2_theta2n * x(idx_Ccj_srna_free) * x(idx_Rc2_b1nb2n))) + (Rc2_csi2f * x(idx_Rc2_b1fb2f)) + (- (Rc2_theta2f * x(idx_Ccj_srna_free) * x(idx_Rc2_b1fb2n))) + (Rc2_csi2n * x(idx_Rc2_b1nb2f)) + (- (Rkb_theta1f * x(idx_Ccj_srna_free) * x(idx_Rkb_b1nb2f))) + (- (Rkb_theta1n * x(idx_Ccj_srna_free) * x(idx_Rkb_b1nb2n))) + (Rkb_csi1f * x(idx_Rkb_b1fb2f)) + (Rkb_csi1n * x(idx_Rkb_b1fb2n)) + (- (Ccj_k_dk * x(idx_Ccj_srna_free)))); % nor4ririlc_r_it1.rclnor.b1nb2f_eq (EQUATION) % dx(idx_R67_b1nb2f) f(idx_R67_b1nb2f_eq) = ((R67_csi1f * x(idx_R67_b1fb2f)) + (- (R67_theta1f * x(idx_D5f_sig_free) * x(idx_R67_b1nb2f))) + (R67_theta2n * x(idx_Ccj_srna_free) * x(idx_R67_b1nb2n)) + (- (R67_csi2n * x(idx_R67_b1nb2f))) + (- (R67_kd2 * x(idx_R67_b1nb2f)))); % nor4ririlc_r_it1.rclnor.b1nb2n_eq (EQUATION) % dx(idx_R67_b1nb2n) f(idx_R67_b1nb2n_eq) = ((R67_csi1n * x(idx_R67_b1fb2n)) + (- (R67_theta1n * x(idx_D5f_sig_free) * x(idx_R67_b1nb2n))) + (R67_csi2n * x(idx_R67_b1nb2f)) + (- (R67_theta2n * x(idx_Ccj_srna_free) * x(idx_R67_b1nb2n))) + (- (R67_kd1 * x(idx_R67_b1nb2n))) + (- (R67_k1r * x(idx_Rxm_r_free) * x(idx_R67_b1nb2n))) + (R67_k_1r * x(idx_R67_rb1nb2n)) + (R67_k2r * x(idx_R67_rb1nb2n)) + (R67_k_el * x(idx_R67_polb)) + (Pnd_k24_lk * x(idx_Pnd_o1to2t)) + (Pnd_k23_lk * x(idx_Pnd_o1to2f)) + (Pnd_k22_lk * x(idx_Pnd_o1fo2t))); % nor4ririlc_r_it1.rclnor.b1fb2n_eq (EQUATION) % dx(idx_R67_b1fb2n) f(idx_R67_b1fb2n_eq) = ((R67_theta1n * x(idx_D5f_sig_free) * x(idx_R67_b1nb2n)) + (- (R67_csi1n * x(idx_R67_b1fb2n))) + (R67_csi2f * x(idx_R67_b1fb2f)) + (- (R67_theta2f * x(idx_Ccj_srna_free) * x(idx_R67_b1fb2n))) + (- (R67_kd3 * x(idx_R67_b1fb2n)))); % nor4ririlc_r_it1.rclnor.b1fb2f_eq (EQUATION) % dx(idx_R67_b1fb2f) f(idx_R67_b1fb2f_eq) = ((R67_theta1f * x(idx_D5f_sig_free) * x(idx_R67_b1nb2f)) + (- (R67_csi1f * x(idx_R67_b1fb2f))) + (R67_theta2f * x(idx_Ccj_srna_free) * x(idx_R67_b1fb2n)) + (- (R67_csi2f * x(idx_R67_b1fb2f))) + (- (R67_kd4 * x(idx_R67_b1fb2f)))); % not3_ip3.rcnot.rb1n_eq (EQUATION) % dx(idx_R35_rb1n) f(idx_R35_rb1n_eq) = ((R35_k1r * x(idx_Rxm_r_free) * x(idx_R35_b1n)) + (- (R35_k_1r * x(idx_R35_rb1n))) + (- (R35_k2r * x(idx_R35_rb1n))) + (- (R35_k_dr1 * x(idx_R35_rb1n)))); % not3_ip3.rcnot.b1n_eq (EQUATION) % dx(idx_R35_b1n) f(idx_R35_b1n_eq) = ((R35_csi1 * x(idx_R35_b1f)) + (- (R35_theta1 * x(idx_D5f_sig_free) * x(idx_R35_b1n))) + (- (R35_kd1 * x(idx_R35_b1n))) + (- (R35_k1r * x(idx_Rxm_r_free) * x(idx_R35_b1n))) + (R35_k_1r * x(idx_R35_rb1n)) + (R35_k2r * x(idx_R35_rb1n)) + (R35_k_el * x(idx_R35_polb))); % not3_ip3.rcnot.b1f_eq (EQUATION) % dx(idx_R35_b1f) f(idx_R35_b1f_eq) = ((R35_theta1 * x(idx_D5f_sig_free) * x(idx_R35_b1n)) + (- (R35_csi1 * x(idx_R35_b1f))) + (- (R35_kd2 * x(idx_R35_b1f)))); % d_pool.sig_free_eq (EQUATION) % dx(idx_D5f_sig_free) f(idx_D5f_sig_free_eq) = (D5f_k_s + (- (D5f_k_d * x(idx_D5f_sig_free))) + (- (R35_theta1 * x(idx_D5f_sig_free) * x(idx_R35_b1n))) + (R35_kd2 * x(idx_R35_b1f)) + (R35_csi1 * x(idx_R35_b1f)) + (- (R67_theta1f * x(idx_D5f_sig_free) * x(idx_R67_b1nb2f))) + (- (R67_theta1n * x(idx_D5f_sig_free) * x(idx_R67_b1nb2n))) + (R67_kd4 * x(idx_R67_b1fb2f)) + (R67_csi1f * x(idx_R67_b1fb2f)) + (R67_kd3 * x(idx_R67_b1fb2n)) + (R67_csi1n * x(idx_R67_b1fb2n)) + (- (Rqa_theta2n * x(idx_D5f_sig_free) * x(idx_Rqa_b1nb2n))) + (Rqa_kd4 * x(idx_Rqa_b1fb2f)) + (Rqa_csi2f * x(idx_Rqa_b1fb2f)) + (- (Rqa_theta2f * x(idx_D5f_sig_free) * x(idx_Rqa_b1fb2n))) + (Rqa_kd2 * x(idx_Rqa_b1nb2f)) + (Rqa_csi2n * x(idx_Rqa_b1nb2f)) + (- (Rc2_theta1f * x(idx_D5f_sig_free) * x(idx_Rc2_b1nb2f))) + (- (Rc2_theta1n * x(idx_D5f_sig_free) * x(idx_Rc2_b1nb2n))) + (Rc2_kd4 * x(idx_Rc2_b1fb2f)) + (Rc2_csi1f * x(idx_Rc2_b1fb2f)) + (Rc2_kd3 * x(idx_Rc2_b1fb2n)) + (Rc2_csi1n * x(idx_Rc2_b1fb2n)) + (- (Rcl_theta2n * x(idx_D5f_sig_free) * x(idx_Rcl_b1nb2n))) + (Rcl_kd4 * x(idx_Rcl_b1fb2f)) + (Rcl_csi2f * x(idx_Rcl_b1fb2f)) + (- (Rcl_theta2f * x(idx_D5f_sig_free) * x(idx_Rcl_b1fb2n))) + (Rcl_kd2 * x(idx_Rcl_b1nb2f)) + (Rcl_csi2n * x(idx_Rcl_b1nb2f))); % nor4raralc_r_it5.rclnor.b1nb2f_eq (EQUATION) % dx(idx_Rc2_b1nb2f) f(idx_Rc2_b1nb2f_eq) = ((Rc2_csi1f * x(idx_Rc2_b1fb2f)) + (- (Rc2_theta1f * x(idx_D5f_sig_free) * x(idx_Rc2_b1nb2f))) + (Rc2_theta2n * x(idx_Ccj_srna_free) * x(idx_Rc2_b1nb2n)) + (- (Rc2_csi2n * x(idx_Rc2_b1nb2f))) + (- (Rc2_kd2 * x(idx_Rc2_b1nb2f)))); % nor4raralc_r_it5.rclnor.b1fb2f_eq (EQUATION) % dx(idx_Rc2_b1fb2f) f(idx_Rc2_b1fb2f_eq) = ((Rc2_theta1f * x(idx_D5f_sig_free) * x(idx_Rc2_b1nb2f)) + (- (Rc2_csi1f * x(idx_Rc2_b1fb2f))) + (Rc2_theta2f * x(idx_Ccj_srna_free) * x(idx_Rc2_b1fb2n)) + (- (Rc2_csi2f * x(idx_Rc2_b1fb2f))) + (- (Rc2_kd4 * x(idx_Rc2_b1fb2f)))); % nor4raralc_r_it5.rclnor.b1fb2n_eq (EQUATION) % dx(idx_Rc2_b1fb2n) f(idx_Rc2_b1fb2n_eq) = ((Rc2_theta1n * x(idx_D5f_sig_free) * x(idx_Rc2_b1nb2n)) + (- (Rc2_csi1n * x(idx_Rc2_b1fb2n))) + (Rc2_csi2f * x(idx_Rc2_b1fb2f)) + (- (Rc2_theta2f * x(idx_Ccj_srna_free) * x(idx_Rc2_b1fb2n))) + (- (Rc2_kd3 * x(idx_Rc2_b1fb2n)))); % nor4raralc_r_it5.rclnor.b1nb2n_eq (EQUATION) % dx(idx_Rc2_b1nb2n) f(idx_Rc2_b1nb2n_eq) = ((Rc2_csi1n * x(idx_Rc2_b1fb2n)) + (- (Rc2_theta1n * x(idx_D5f_sig_free) * x(idx_Rc2_b1nb2n))) + (Rc2_csi2n * x(idx_Rc2_b1nb2f)) + (- (Rc2_theta2n * x(idx_Ccj_srna_free) * x(idx_Rc2_b1nb2n))) + (- (Rc2_kd1 * x(idx_Rc2_b1nb2n))) + (- (Rc2_k1r * x(idx_Rxm_r_free) * x(idx_Rc2_b1nb2n))) + (Rc2_k_1r * x(idx_Rc2_rb1nb2n)) + (Rc2_k2r * x(idx_Rc2_rb1nb2n)) + (Rc2_k_el * x(idx_Rc2_polb)) + (Pzb_k24_lk * x(idx_Pzb_o1to2t)) + (Pzb_k23_lk * x(idx_Pzb_o1to2f)) + (Pzb_k22_lk * x(idx_Pzb_o1fo2t))); % ribpool.r_free_eq (EQUATION) % dx(idx_Rxm_r_free) f(idx_Rxm_r_free_eq) = ((Tst_zeta_r * x(idx_Tst_ru)) + (Tm2_zeta_r * x(idx_Tm2_ru)) + (Tyn_zeta_r * x(idx_Tyn_ru)) + (Trw_zeta_r * x(idx_Trw_ru)) + (Tj2_zeta_r * x(idx_Tj2_ru)) + (Tow_zeta_r * x(idx_Tow_ru)) + (Tgt_zeta_r * x(idx_Tgt_ru)) + (T6u_zeta_r * x(idx_T6u_ru)) + (Tih_zeta_r * x(idx_Tih_ru)) + (Twd_zeta_r * x(idx_Twd_ru)) + (Tvf_zeta_r * x(idx_Tvf_ru)) + (T10_zeta_r * x(idx_T10_ru)) + (Tp8_zeta_r * x(idx_Tp8_ru)) + (T34_zeta_r * x(idx_T34_ru)) + (F3m_zeta_r * x(idx_F3m_ru)) + (- (R52_k1r * x(idx_Rxm_r_free) * x(idx_R52_b_free))) + (R52_k_drb * x(idx_R52_rb)) + (R52_k_1r * x(idx_R52_rb)) + (- (Ryb_k1r * x(idx_Rxm_r_free) * x(idx_Ryb_b_free))) + (Ryb_k_drb * x(idx_Ryb_rb)) + (Ryb_k_1r * x(idx_Ryb_rb)) + (- (Raw_k1r * x(idx_Rxm_r_free) * x(idx_Raw_b_free))) + (Raw_k_drb * x(idx_Raw_rb)) + (Raw_k_1r * x(idx_Raw_rb)) + (- (R45_k1r * x(idx_Rxm_r_free) * x(idx_R45_b_free))) + (R45_k_drb * x(idx_R45_rb)) + (R45_k_1r * x(idx_R45_rb)) + (- (Rxb_k1r * x(idx_Rxm_r_free) * x(idx_Rxb_b1n))) + (Rxb_k_dr1 * x(idx_Rxb_rb1n)) + (Rxb_k_1r * x(idx_Rxb_rb1n)) + (- (R35_k1r * x(idx_Rxm_r_free) * x(idx_R35_b1n))) + (R35_k_dr1 * x(idx_R35_rb1n)) + (R35_k_1r * x(idx_R35_rb1n)) + (- (R0n_k1r * x(idx_Rxm_r_free) * x(idx_R0n_b1nb2n))) + (R0n_k_dr1 * x(idx_R0n_rb1nb2n)) + (R0n_k_1r * x(idx_R0n_rb1nb2n)) + (- (R67_k1r * x(idx_Rxm_r_free) * x(idx_R67_b1nb2n))) + (R67_k_dr1 * x(idx_R67_rb1nb2n)) + (R67_k_1r * x(idx_R67_rb1nb2n)) + (- (Rqa_k1r * x(idx_Rxm_r_free) * x(idx_Rqa_b1nb2n))) + (Rqa_k_dr1 * x(idx_Rqa_rb1nb2n)) + (Rqa_k_1r * x(idx_Rqa_rb1nb2n)) + (- (Rdk_k1r * x(idx_Rxm_r_free) * x(idx_Rdk_b1nb2n))) + (Rdk_k_dr1 * x(idx_Rdk_rb1nb2n)) + (Rdk_k_1r * x(idx_Rdk_rb1nb2n)) + (- (R6h_k1r * x(idx_Rxm_r_free) * x(idx_R6h_b1nb2n))) + (R6h_k_dr1 * x(idx_R6h_rb1nb2n)) + (R6h_k_1r * x(idx_R6h_rb1nb2n)) + (- (Rc2_k1r * x(idx_Rxm_r_free) * x(idx_Rc2_b1nb2n))) + (Rc2_k_dr1 * x(idx_Rc2_rb1nb2n)) + (Rc2_k_1r * x(idx_Rc2_rb1nb2n)) + (- (Rcl_k1r * x(idx_Rxm_r_free) * x(idx_Rcl_b1nb2n))) + (Rcl_k_dr1 * x(idx_Rcl_rb1nb2n)) + (Rcl_k_1r * x(idx_Rcl_rb1nb2n)) + (- (Rkb_k1r * x(idx_Rxm_r_free) * x(idx_Rkb_b1nb2n))) + (Rkb_k_dr1 * x(idx_Rkb_rb1nb2n)) + (Rkb_k_1r * x(idx_Rkb_rb1nb2n)) + (- (R56_k1r * x(idx_Rxm_r_free) * x(idx_R56_b_free))) + (R56_k_drb * x(idx_R56_rb)) + (R56_k_1r * x(idx_R56_rb))); % not0_ip1.r0.b_free_eq (EQUATION) % dx(idx_R45_b_free) f(idx_R45_b_free_eq) = ((R45_k_el * x(idx_R45_polb)) + (R45_k_1r * x(idx_R45_rb)) + (R45_k2r * x(idx_R45_rb)) + (- (R45_k1r * x(idx_Rxm_r_free) * x(idx_R45_b_free))) + (- (R45_k_db * x(idx_R45_b_free)))); % not0_ip1.r0.rb_eq (EQUATION) % dx(idx_R45_rb) f(idx_R45_rb_eq) = ((R45_k1r * x(idx_Rxm_r_free) * x(idx_R45_b_free)) + (- (R45_k_1r * x(idx_R45_rb))) + (- (R45_k2r * x(idx_R45_rb))) + (- (R45_k_drb * x(idx_R45_rb)))); % not0_ip1.tf.ra_eq (EQUATION) % dx(idx_Trw_ra) f(idx_Trw_ra_eq) = ((R45_k2r * x(idx_R45_rb)) + (- (Trw_k_el_r * x(idx_Trw_ra)))); % b_pos_pool.fm_eq (EQUATION) % dx(idx_Bh0_fm) f(idx_Bh0_fm_eq) = ((2 * Bh0_epsilon * x(idx_Bh0_fd)) + (- (2 * Bh0_delta * (x(idx_Bh0_fm) ^ 2))) + (- (Bh0_k_dm * x(idx_Bh0_fm))) + (Trw_k_el_r * x(idx_Trw_ra))); % b_pos_pool.fdi_eq (EQUATION) % dx(idx_Bh0_fdi) f(idx_Bh0_fdi_eq) = ((Bh0_delta * (x(idx_Bh0_fm) ^ 2)) + (- (Bh0_epsilon * x(idx_Bh0_fd))) + (Bh0_mu * x(idx_Bh0_fd)) + (- (Bh0_lambda * x(idx_Bh0_fdi) * (x(idx_B5d_sig_free) ^ Pfe_n1))) + (- (Bh0_k_ddi * x(idx_Bh0_fdi)))); % b_pool.sig_free_eq (EQUATION) % dx(idx_B5d_sig_free) f(idx_B5d_sig_free_eq) = (B5d_k_s + (- (B5d_k_d * x(idx_B5d_sig_free))) + (Pfe_n1 * Pfe_k_d12 * x(idx_Pfe_o1t)) + (Pht_n2 * Pht_k_d24 * x(idx_Pht_o1to2t)) + (Pht_n2 * Pht_k_d22 * x(idx_Pht_o1fo2t)) + (Pnd_n2 * Pnd_k_d24 * x(idx_Pnd_o1to2t)) + (Pnd_n2 * Pnd_k_d22 * x(idx_Pnd_o1fo2t)) + (P9b_n1 * P9b_k_d14 * x(idx_P9b_o1to2t)) + (P9b_n1 * P9b_k_d13 * x(idx_P9b_o1to2f)) + (Pn6_n1 * Pn6_k_d14 * x(idx_Pn6_o1to2t)) + (Pn6_n1 * Pn6_k_d13 * x(idx_Pn6_o1to2f)) + (- (Pfe_n1 * Bh0_lambda * x(idx_Bh0_fdi) * (x(idx_B5d_sig_free) ^ Pfe_n1))) + (Pfe_n1 * Bh0_mu * x(idx_Bh0_fd)) + (Pfe_n1 * Bh0_k_dd * x(idx_Bh0_fd))); % a_pos_pool.fm_eq (EQUATION) % dx(idx_Agz_fm) f(idx_Agz_fm_eq) = ((2 * Agz_epsilon * x(idx_Agz_fd)) + (- (2 * Agz_delta * (x(idx_Agz_fm) ^ 2))) + (- (Agz_k_dm * x(idx_Agz_fm))) + (Tm2_k_el_r * x(idx_Tm2_ra))); % a_pos_pool.fdi_eq (EQUATION) % dx(idx_Agz_fdi) f(idx_Agz_fdi_eq) = ((Agz_delta * (x(idx_Agz_fm) ^ 2)) + (- (Agz_epsilon * x(idx_Agz_fd))) + (Agz_mu * x(idx_Agz_fd)) + (- (Agz_lambda * x(idx_Agz_fdi) * (x(idx_A5c_sig_free) ^ P9k_n1))) + (- (Agz_k_ddi * x(idx_Agz_fdi)))); % a_pool.sig_free_eq (EQUATION) % dx(idx_A5c_sig_free) f(idx_A5c_sig_free_eq) = (A5c_k_s + (- (A5c_k_d * x(idx_A5c_sig_free))) + (P9k_n1 * P9k_k_d12 * x(idx_P9k_o1t)) + (Pht_n1 * Pht_k_d14 * x(idx_Pht_o1to2t)) + (Pht_n1 * Pht_k_d13 * x(idx_Pht_o1to2f)) + (Pnd_n1 * Pnd_k_d14 * x(idx_Pnd_o1to2t)) + (Pnd_n1 * Pnd_k_d13 * x(idx_Pnd_o1to2f)) + (Pe8_n1 * Pe8_k_d14 * x(idx_Pe8_o1to2t)) + (Pe8_n1 * Pe8_k_d13 * x(idx_Pe8_o1to2f)) + (Ps3_n1 * Ps3_k_d14 * x(idx_Ps3_o1to2t)) + (Ps3_n1 * Ps3_k_d13 * x(idx_Ps3_o1to2f)) + (- (P9k_n1 * Agz_lambda * x(idx_Agz_fdi) * (x(idx_A5c_sig_free) ^ P9k_n1))) + (P9k_n1 * Agz_mu * x(idx_Agz_fd)) + (P9k_n1 * Agz_k_dd * x(idx_Agz_fd))); % b_neg_pool.fm_eq (EQUATION) % dx(idx_Bci_fm) f(idx_Bci_fm_eq) = ((2 * Bci_epsilon * x(idx_Bci_fd)) + (- (2 * Bci_delta * (x(idx_Bci_fm) ^ 2))) + (- (Bci_k_dm * x(idx_Bci_fm))) + (Tyn_k_el_r * x(idx_Tyn_ra))); % nor4ririlc_r_it1.pririnor.polo1fo2f_eq (EQUATION) % dx(idx_Pnd_polo1fo2f) f(idx_Pnd_polo1fo2f_eq) = ((Pnd_k1 * x(idx_P4i_pol_free) * x(idx_Pnd_o1fo2f)) + (- (Pnd_k_1 * x(idx_Pnd_polo1fo2f))) + (- (Pnd_k2 * x(idx_Pnd_polo1fo2f)))); % nor4ririlc_r_it1.pririnor.o1to2f_eq (EQUATION) % dx(idx_Pnd_o1to2f) f(idx_Pnd_o1to2f_eq) = ((Pnd_alpha1f * x(idx_Agz_fd) * x(idx_Pnd_o1fo2f)) + (Pnd_beta2t * x(idx_Pnd_o1to2t)) + (Pnd_k_d24 * x(idx_Pnd_o1to2t)) + (- (Pnd_beta1f * x(idx_Pnd_o1to2f))) + (- (Pnd_alpha2t * x(idx_Bh0_fd) * x(idx_Pnd_o1to2f))) + (- (Pnd_k_d13 * x(idx_Pnd_o1to2f)))); % nor4ririlc_r_it1.pririnor.o1to2t_eq (EQUATION) % dx(idx_Pnd_o1to2t) f(idx_Pnd_o1to2t_eq) = ((Pnd_alpha1t * x(idx_Agz_fd) * x(idx_Pnd_o1fo2t)) + (Pnd_alpha2t * x(idx_Bh0_fd) * x(idx_Pnd_o1to2f)) + (- (Pnd_beta1t * x(idx_Pnd_o1to2t))) + (- (Pnd_beta2t * x(idx_Pnd_o1to2t))) + (- (Pnd_k_d14 * x(idx_Pnd_o1to2t))) + (- (Pnd_k_d24 * x(idx_Pnd_o1to2t)))); % nor4ririlc_r_it1.pririnor.o1fo2t_eq (EQUATION) % dx(idx_Pnd_o1fo2t) f(idx_Pnd_o1fo2t_eq) = ((Pnd_beta1t * x(idx_Pnd_o1to2t)) + (Pnd_alpha2f * x(idx_Bh0_fd) * x(idx_Pnd_o1fo2f)) + (Pnd_k_d14 * x(idx_Pnd_o1to2t)) + (- (Pnd_alpha1t * x(idx_Agz_fd) * x(idx_Pnd_o1fo2t))) + (- (Pnd_beta2f * x(idx_Pnd_o1fo2t))) + (- (Pnd_k_d22 * x(idx_Pnd_o1fo2t)))); % nor4ririlc_r_it1.pririnor.o1fo2f_eq (EQUATION) % dx(idx_Pnd_o1fo2f) f(idx_Pnd_o1fo2f_eq) = ((Pnd_beta1f * x(idx_Pnd_o1to2f)) + (Pnd_beta2f * x(idx_Pnd_o1fo2t)) + (Pnd_k_d13 * x(idx_Pnd_o1to2f)) + (Pnd_k_d22 * x(idx_Pnd_o1fo2t)) + (Pnd_k_1 * x(idx_Pnd_polo1fo2f)) + (Pnd_k2 * x(idx_Pnd_polo1fo2f)) + (- (Pnd_alpha1f * x(idx_Agz_fd) * x(idx_Pnd_o1fo2f))) + (- (Pnd_alpha2f * x(idx_Bh0_fd) * x(idx_Pnd_o1fo2f))) + (- (Pnd_k1 * x(idx_P4i_pol_free) * x(idx_Pnd_o1fo2f)))); % nor4ririlc_r_it0.pririnor.o1to2f_eq (EQUATION) % dx(idx_Pht_o1to2f) f(idx_Pht_o1to2f_eq) = ((Pht_alpha1f * x(idx_Agz_fd) * x(idx_Pht_o1fo2f)) + (Pht_beta2t * x(idx_Pht_o1to2t)) + (Pht_k_d24 * x(idx_Pht_o1to2t)) + (- (Pht_beta1f * x(idx_Pht_o1to2f))) + (- (Pht_alpha2t * x(idx_Bh0_fd) * x(idx_Pht_o1to2f))) + (- (Pht_k_d13 * x(idx_Pht_o1to2f)))); % nor4ririlc_r_it0.pririnor.o1to2t_eq (EQUATION) % dx(idx_Pht_o1to2t) f(idx_Pht_o1to2t_eq) = ((Pht_alpha1t * x(idx_Agz_fd) * x(idx_Pht_o1fo2t)) + (Pht_alpha2t * x(idx_Bh0_fd) * x(idx_Pht_o1to2f)) + (- (Pht_beta1t * x(idx_Pht_o1to2t))) + (- (Pht_beta2t * x(idx_Pht_o1to2t))) + (- (Pht_k_d14 * x(idx_Pht_o1to2t))) + (- (Pht_k_d24 * x(idx_Pht_o1to2t)))); % nor4ririlc_r_it0.pririnor.o1fo2t_eq (EQUATION) % dx(idx_Pht_o1fo2t) f(idx_Pht_o1fo2t_eq) = ((Pht_beta1t * x(idx_Pht_o1to2t)) + (Pht_alpha2f * x(idx_Bh0_fd) * x(idx_Pht_o1fo2f)) + (Pht_k_d14 * x(idx_Pht_o1to2t)) + (- (Pht_alpha1t * x(idx_Agz_fd) * x(idx_Pht_o1fo2t))) + (- (Pht_beta2f * x(idx_Pht_o1fo2t))) + (- (Pht_k_d22 * x(idx_Pht_o1fo2t)))); % b_pos_pool.fd_eq (EQUATION) % dx(idx_Bh0_fd) f(idx_Bh0_fd_eq) = ((- (Pfe_alpha1 * x(idx_Bh0_fd) * x(idx_Pfe_o1f))) + (Pfe_beta1 * x(idx_Pfe_o1t)) + (- (Pht_alpha2t * x(idx_Bh0_fd) * x(idx_Pht_o1to2f))) + (- (Pht_alpha2f * x(idx_Bh0_fd) * x(idx_Pht_o1fo2f))) + (Pht_beta2t * x(idx_Pht_o1to2t)) + (Pht_beta2f * x(idx_Pht_o1fo2t)) + (- (Pnd_alpha2t * x(idx_Bh0_fd) * x(idx_Pnd_o1to2f))) + (- (Pnd_alpha2f * x(idx_Bh0_fd) * x(idx_Pnd_o1fo2f))) + (Pnd_beta2t * x(idx_Pnd_o1to2t)) + (Pnd_beta2f * x(idx_Pnd_o1fo2t)) + (- (P9b_alpha1t * x(idx_Bh0_fd) * x(idx_P9b_o1fo2t))) + (- (P9b_alpha1f * x(idx_Bh0_fd) * x(idx_P9b_o1fo2f))) + (P9b_beta1t * x(idx_P9b_o1to2t)) + (P9b_beta1f * x(idx_P9b_o1to2f)) + (- (Pn6_alpha1t * x(idx_Bh0_fd) * x(idx_Pn6_o1fo2t))) + (- (Pn6_alpha1f * x(idx_Bh0_fd) * x(idx_Pn6_o1fo2f))) + (Pn6_beta1t * x(idx_Pn6_o1to2t)) + (Pn6_beta1f * x(idx_Pn6_o1to2f)) + (Bh0_lambda * x(idx_Bh0_fdi) * (x(idx_B5d_sig_free) ^ Pfe_n1)) + (- (Bh0_mu * x(idx_Bh0_fd))) + (- (Bh0_k_dd * x(idx_Bh0_fd)))); % nor4ririlc_r_it0.pririnor.o1fo2f_eq (EQUATION) % dx(idx_Pht_o1fo2f) f(idx_Pht_o1fo2f_eq) = ((Pht_beta1f * x(idx_Pht_o1to2f)) + (Pht_beta2f * x(idx_Pht_o1fo2t)) + (Pht_k_d13 * x(idx_Pht_o1to2f)) + (Pht_k_d22 * x(idx_Pht_o1fo2t)) + (Pht_k_1 * x(idx_Pht_polo1fo2f)) + (Pht_k2 * x(idx_Pht_polo1fo2f)) + (- (Pht_alpha1f * x(idx_Agz_fd) * x(idx_Pht_o1fo2f))) + (- (Pht_alpha2f * x(idx_Bh0_fd) * x(idx_Pht_o1fo2f))) + (- (Pht_k1 * x(idx_P4i_pol_free) * x(idx_Pht_o1fo2f)))); % a_pos_pool.fd_eq (EQUATION) % dx(idx_Agz_fd) f(idx_Agz_fd_eq) = ((- (P9k_alpha1 * x(idx_Agz_fd) * x(idx_P9k_o1f))) + (P9k_beta1 * x(idx_P9k_o1t)) + (- (Pht_alpha1t * x(idx_Agz_fd) * x(idx_Pht_o1fo2t))) + (- (Pht_alpha1f * x(idx_Agz_fd) * x(idx_Pht_o1fo2f))) + (Pht_beta1t * x(idx_Pht_o1to2t)) + (Pht_beta1f * x(idx_Pht_o1to2f)) + (- (Pnd_alpha1t * x(idx_Agz_fd) * x(idx_Pnd_o1fo2t))) + (- (Pnd_alpha1f * x(idx_Agz_fd) * x(idx_Pnd_o1fo2f))) + (Pnd_beta1t * x(idx_Pnd_o1to2t)) + (Pnd_beta1f * x(idx_Pnd_o1to2f)) + (- (Pe8_alpha1t * x(idx_Agz_fd) * x(idx_Pe8_o1fo2t))) + (- (Pe8_alpha1f * x(idx_Agz_fd) * x(idx_Pe8_o1fo2f))) + (Pe8_beta1t * x(idx_Pe8_o1to2t)) + (Pe8_beta1f * x(idx_Pe8_o1to2f)) + (- (Ps3_alpha1t * x(idx_Agz_fd) * x(idx_Ps3_o1fo2t))) + (- (Ps3_alpha1f * x(idx_Agz_fd) * x(idx_Ps3_o1fo2f))) + (Ps3_beta1t * x(idx_Ps3_o1to2t)) + (Ps3_beta1f * x(idx_Ps3_o1to2f)) + (Agz_lambda * x(idx_Agz_fdi) * (x(idx_A5c_sig_free) ^ P9k_n1)) + (- (Agz_mu * x(idx_Agz_fd))) + (- (Agz_k_dd * x(idx_Agz_fd)))); % nor4riracc_r_it2.priranor.o1fo2f_eq (EQUATION) % dx(idx_Pe8_o1fo2f) f(idx_Pe8_o1fo2f_eq) = ((Pe8_beta1f * x(idx_Pe8_o1to2f)) + (Pe8_beta2f * x(idx_Pe8_o1fo2t)) + (Pe8_k_d13 * x(idx_Pe8_o1to2f)) + (Pe8_k_d22 * x(idx_Pe8_o1fo2t)) + (Pe8_k_1 * x(idx_Pe8_polo1fo2f)) + (Pe8_k2 * x(idx_Pe8_polo1fo2f)) + (- (Pe8_alpha1f * x(idx_Agz_fd) * x(idx_Pe8_o1fo2f))) + (- (Pe8_alpha2f * x(idx_Bci_fd) * x(idx_Pe8_o1fo2f))) + (- (Pe8_k1 * x(idx_P4i_pol_free) * x(idx_Pe8_o1fo2f)))); % b_neg_pool.fd_eq (EQUATION) % dx(idx_Bci_fd) f(idx_Bci_fd_eq) = ((Bci_delta * (x(idx_Bci_fm) ^ 2)) + (- (Bci_epsilon * x(idx_Bci_fd))) + (- (Pe8_alpha2t * x(idx_Bci_fd) * x(idx_Pe8_o1to2f))) + (- (Pe8_alpha2f * x(idx_Bci_fd) * x(idx_Pe8_o1fo2f))) + (Pe8_beta2t * x(idx_Pe8_o1to2t)) + (Pe8_beta2f * x(idx_Pe8_o1fo2t)) + (- (Ps3_alpha2t * x(idx_Bci_fd) * x(idx_Ps3_o1to2f))) + (- (Ps3_alpha2f * x(idx_Bci_fd) * x(idx_Ps3_o1fo2f))) + (Ps3_beta2t * x(idx_Ps3_o1to2t)) + (Ps3_beta2f * x(idx_Ps3_o1fo2t)) + (- (P5e_alpha2t * x(idx_Bci_fd) * x(idx_P5e_o1to2f))) + (- (P5e_alpha2f * x(idx_Bci_fd) * x(idx_P5e_o1fo2f))) + (P5e_beta2t * x(idx_P5e_o1to2t)) + (P5e_beta2f * x(idx_P5e_o1fo2t)) + (- (Pzb_alpha2t * x(idx_Bci_fd) * x(idx_Pzb_o1to2f))) + (- (Pzb_alpha2f * x(idx_Bci_fd) * x(idx_Pzb_o1fo2f))) + (Pzb_beta2t * x(idx_Pzb_o1to2t)) + (Pzb_beta2f * x(idx_Pzb_o1fo2t)) + (- (Bci_k_dd * x(idx_Bci_fd)))); % nor4raralc_r_it5.praranor.o1fo2f_eq (EQUATION) % dx(idx_Pzb_o1fo2f) f(idx_Pzb_o1fo2f_eq) = ((Pzb_beta1f * x(idx_Pzb_o1to2f)) + (Pzb_beta2f * x(idx_Pzb_o1fo2t)) + (Pzb_k_d13 * x(idx_Pzb_o1to2f)) + (Pzb_k_d22 * x(idx_Pzb_o1fo2t)) + (Pzb_k_1 * x(idx_Pzb_polo1fo2f)) + (Pzb_k2 * x(idx_Pzb_polo1fo2f)) + (- (Pzb_alpha1f * x(idx_Ach_fd) * x(idx_Pzb_o1fo2f))) + (- (Pzb_alpha2f * x(idx_Bci_fd) * x(idx_Pzb_o1fo2f))) + (- (Pzb_k1 * x(idx_P4i_pol_free) * x(idx_Pzb_o1fo2f)))); % nor4raralc_r_it5.tf.pola_eq (EQUATION) % dx(idx_T10_pola) f(idx_T10_pola_eq) = ((Rc2_k_el * x(idx_Rc2_polb)) + (- (T10_k_el * x(idx_T10_pola)))); % nor4raralc_r_it5.te.polt_eq (EQUATION) % dx(idx_T6r_polt) f(idx_T6r_polt_eq) = ((T10_k_el * x(idx_T10_pola)) + (- (T6r_zeta * x(idx_T6r_polt)))); % nor4riracc_r_it6.tf.pola_eq (EQUATION) % dx(idx_Tp8_pola) f(idx_Tp8_pola_eq) = ((Rcl_k_el * x(idx_Rcl_polb)) + (- (Tp8_k_el * x(idx_Tp8_pola)))); % nor4riracc_r_it6.te.polt_eq (EQUATION) % dx(idx_Tuz_polt) f(idx_Tuz_polt_eq) = ((Tp8_k_el * x(idx_Tp8_pola)) + (- (Tuz_zeta * x(idx_Tuz_polt)))); % nor4rirall_r_it7.tf.pola_eq (EQUATION) % dx(idx_T34_pola) f(idx_T34_pola_eq) = ((Rkb_k_el * x(idx_Rkb_polb)) + (- (T34_k_el * x(idx_T34_pola)))); % nor4rirall_r_it7.te.polt_eq (EQUATION) % dx(idx_T8u_polt) f(idx_T8u_polt_eq) = ((T34_k_el * x(idx_T34_pola)) + (- (T8u_zeta * x(idx_T8u_polt)))); % nor1r_f_sf0.fp.pola_eq (EQUATION) % dx(idx_F3m_pola) f(idx_F3m_pola_eq) = ((R56_k_el * x(idx_R56_polb)) + (- (F3m_k_el * x(idx_F3m_pola)))); % nor1r_f_sf0.te.polt_eq (EQUATION) % dx(idx_Tu1_polt) f(idx_Tu1_polt_eq) = ((F3m_k_el * x(idx_F3m_pola)) + (- (Tu1_zeta * x(idx_Tu1_polt)))); % not0_ip0.tf.pola_eq (EQUATION) % dx(idx_Tm2_pola) f(idx_Tm2_pola_eq) = ((Ryb_k_el * x(idx_Ryb_polb)) + (- (Tm2_k_el * x(idx_Tm2_pola)))); % not0_ip0.te.polt_eq (EQUATION) % dx(idx_Trq_polt) f(idx_Trq_polt_eq) = ((Tm2_k_el * x(idx_Tm2_pola)) + (- (Trq_zeta * x(idx_Trq_polt)))); % not0_ip0.tf_2.pola_eq (EQUATION) % dx(idx_Tst_pola) f(idx_Tst_pola_eq) = ((R52_k_el * x(idx_R52_polb)) + (- (Tst_k_el * x(idx_Tst_pola)))); % not0_ip0.te_2.polt_eq (EQUATION) % dx(idx_Tyh_polt) f(idx_Tyh_polt_eq) = ((Tst_k_el * x(idx_Tst_pola)) + (- (Tyh_zeta * x(idx_Tyh_polt)))); % not0_ip1.tf.pola_eq (EQUATION) % dx(idx_Trw_pola) f(idx_Trw_pola_eq) = ((R45_k_el * x(idx_R45_polb)) + (- (Trw_k_el * x(idx_Trw_pola)))); % not0_ip1.te.polt_eq (EQUATION) % dx(idx_Txk_polt) f(idx_Txk_polt_eq) = ((Trw_k_el * x(idx_Trw_pola)) + (- (Txk_zeta * x(idx_Txk_polt)))); % not0_ip1.tf_2.pola_eq (EQUATION) % dx(idx_Tyn_pola) f(idx_Tyn_pola_eq) = ((Raw_k_el * x(idx_Raw_polb)) + (- (Tyn_k_el * x(idx_Tyn_pola)))); % not0_ip1.te_2.polt_eq (EQUATION) % dx(idx_T4b_polt) f(idx_T4b_polt_eq) = ((Tyn_k_el * x(idx_Tyn_pola)) + (- (T4b_zeta * x(idx_T4b_polt)))); % not3_ip2.tf.pola_eq (EQUATION) % dx(idx_Tj2_pola) f(idx_Tj2_pola_eq) = ((Rxb_k_el * x(idx_Rxb_polb)) + (- (Tj2_k_el * x(idx_Tj2_pola)))); % not3_ip2.te.polt_eq (EQUATION) % dx(idx_Toq_polt) f(idx_Toq_polt_eq) = ((Tj2_k_el * x(idx_Tj2_pola)) + (- (Toq_zeta * x(idx_Toq_polt)))); % not3_ip3.tf.pola_eq (EQUATION) % dx(idx_Tow_pola) f(idx_Tow_pola_eq) = ((R35_k_el * x(idx_R35_polb)) + (- (Tow_k_el * x(idx_Tow_pola)))); % not3_ip3.te.polt_eq (EQUATION) % dx(idx_Tuk_polt) f(idx_Tuk_polt_eq) = ((Tow_k_el * x(idx_Tow_pola)) + (- (Tuk_zeta * x(idx_Tuk_polt)))); % nor4ririlc_r_it0.tf.pola_eq (EQUATION) % dx(idx_Tgt_pola) f(idx_Tgt_pola_eq) = ((R0n_k_el * x(idx_R0n_polb)) + (- (Tgt_k_el * x(idx_Tgt_pola)))); % nor4ririlc_r_it0.te.polt_eq (EQUATION) % dx(idx_T70_polt) f(idx_T70_polt_eq) = ((Tgt_k_el * x(idx_Tgt_pola)) + (- (T70_zeta * x(idx_T70_polt)))); % nor4ririlc_r_it1.tf.pola_eq (EQUATION) % dx(idx_T6u_pola) f(idx_T6u_pola_eq) = ((R67_k_el * x(idx_R67_polb)) + (- (T6u_k_el * x(idx_T6u_pola)))); % nor4ririlc_r_it1.te.polt_eq (EQUATION) % dx(idx_Tcl_polt) f(idx_Tcl_polt_eq) = ((T6u_k_el * x(idx_T6u_pola)) + (- (Tcl_zeta * x(idx_Tcl_polt)))); % nor4riracc_r_it2.tf.pola_eq (EQUATION) % dx(idx_Tih_pola) f(idx_Tih_pola_eq) = ((Rqa_k_el * x(idx_Rqa_polb)) + (- (Tih_k_el * x(idx_Tih_pola)))); % nor4riracc_r_it2.te.polt_eq (EQUATION) % dx(idx_Tzw_polt) f(idx_Tzw_polt_eq) = ((Tih_k_el * x(idx_Tih_pola)) + (- (Tzw_zeta * x(idx_Tzw_polt)))); % nor4rirall_r_it3.tf.pola_eq (EQUATION) % dx(idx_Twd_pola) f(idx_Twd_pola_eq) = ((Rdk_k_el * x(idx_Rdk_polb)) + (- (Twd_k_el * x(idx_Twd_pola)))); % nor4rirall_r_it3.te.polt_eq (EQUATION) % dx(idx_T23_polt) f(idx_T23_polt_eq) = ((Twd_k_el * x(idx_Twd_pola)) + (- (T23_zeta * x(idx_T23_polt)))); % nor4raralc_r_it4.tf.pola_eq (EQUATION) % dx(idx_Tvf_pola) f(idx_Tvf_pola_eq) = ((R6h_k_el * x(idx_R6h_polb)) + (- (Tvf_k_el * x(idx_Tvf_pola)))); % nor4raralc_r_it4.te.polt_eq (EQUATION) % dx(idx_T16_polt) f(idx_T16_polt_eq) = ((Tvf_k_el * x(idx_Tvf_pola)) + (- (T16_zeta * x(idx_T16_polt)))); % polpool.pol_free_eq (EQUATION) % dx(idx_P4i_pol_free) f(idx_P4i_pol_free_eq) = ((Tyh_zeta * x(idx_Tyh_polt)) + (Trq_zeta * x(idx_Trq_polt)) + (T4b_zeta * x(idx_T4b_polt)) + (Txk_zeta * x(idx_Txk_polt)) + (Tj1_zeta * x(idx_Tj1_polt)) + (Toq_zeta * x(idx_Toq_polt)) + (Tov_zeta * x(idx_Tov_polt)) + (Tuk_zeta * x(idx_Tuk_polt)) + (T70_zeta * x(idx_T70_polt)) + (Tcl_zeta * x(idx_Tcl_polt)) + (Tzw_zeta * x(idx_Tzw_polt)) + (T23_zeta * x(idx_T23_polt)) + (T16_zeta * x(idx_T16_polt)) + (T6r_zeta * x(idx_T6r_polt)) + (Tuz_zeta * x(idx_Tuz_polt)) + (T8u_zeta * x(idx_T8u_polt)) + (Tu1_zeta * x(idx_Tu1_polt)) + (- (P9k_k1 * x(idx_P4i_pol_free) * x(idx_P9k_o1f))) + (P9k_k_1 * x(idx_P9k_polo1f)) + (- (Ps2_k1 * x(idx_P4i_pol_free) * x(idx_Ps2_p_free))) + (Ps2_k_1 * x(idx_Ps2_ppol)) + (- (Pfe_k1 * x(idx_P4i_pol_free) * x(idx_Pfe_o1f))) + (Pfe_k_1 * x(idx_Pfe_polo1f)) + (- (Pxw_k1 * x(idx_P4i_pol_free) * x(idx_Pxw_p_free))) + (Pxw_k_1 * x(idx_Pxw_ppol)) + (Plw_k_d12p * x(idx_Plw_polo1t)) + (- (Plw_k1 * x(idx_P4i_pol_free) * x(idx_Plw_o1t))) + (Plw_k_1 * x(idx_Plw_polo1t)) + (- (Pmw_k1 * x(idx_P4i_pol_free) * x(idx_Pmw_p_free))) + (Pmw_k_1 * x(idx_Pmw_ppol)) + (Prq_k_d12p * x(idx_Prq_polo1t)) + (- (Prq_k1 * x(idx_P4i_pol_free) * x(idx_Prq_o1t))) + (Prq_k_1 * x(idx_Prq_polo1t)) + (- (Psq_k1 * x(idx_P4i_pol_free) * x(idx_Psq_p_free))) + (Psq_k_1 * x(idx_Psq_ppol)) + (- (Pht_k1 * x(idx_P4i_pol_free) * x(idx_Pht_o1fo2f))) + (Pht_k_1 * x(idx_Pht_polo1fo2f)) + (- (Pnd_k1 * x(idx_P4i_pol_free) * x(idx_Pnd_o1fo2f))) + (Pnd_k_1 * x(idx_Pnd_polo1fo2f)) + (- (Pe8_k1 * x(idx_P4i_pol_free) * x(idx_Pe8_o1fo2f))) + (Pe8_k_1 * x(idx_Pe8_polo1fo2f)) + (- (Ps3_k1 * x(idx_P4i_pol_free) * x(idx_Ps3_o1fo2f))) + (Ps3_k_1 * x(idx_Ps3_polo1fo2f)) + (- (P5e_k1 * x(idx_P4i_pol_free) * x(idx_P5e_o1fo2f))) + (P5e_k_1 * x(idx_P5e_polo1fo2f)) + (- (Pzb_k1 * x(idx_P4i_pol_free) * x(idx_Pzb_o1fo2f))) + (Pzb_k_1 * x(idx_Pzb_polo1fo2f)) + (- (P9b_k1 * x(idx_P4i_pol_free) * x(idx_P9b_o1fo2f))) + (P9b_k_1 * x(idx_P9b_polo1fo2f)) + (- (Pn6_k1 * x(idx_P4i_pol_free) * x(idx_Pn6_o1fo2f))) + (Pn6_k_1 * x(idx_Pn6_polo1fo2f)) + (- (Pas_k1 * x(idx_P4i_pol_free) * x(idx_Pas_o1f))) + (Pas_k_1 * x(idx_Pas_polo1f))); % nor4raralc_r_it4.praranor.o1fo2f_eq (EQUATION) % dx(idx_P5e_o1fo2f) f(idx_P5e_o1fo2f_eq) = ((P5e_beta1f * x(idx_P5e_o1to2f)) + (P5e_beta2f * x(idx_P5e_o1fo2t)) + (P5e_k_d13 * x(idx_P5e_o1to2f)) + (P5e_k_d22 * x(idx_P5e_o1fo2t)) + (P5e_k_1 * x(idx_P5e_polo1fo2f)) + (P5e_k2 * x(idx_P5e_polo1fo2f)) + (- (P5e_alpha1f * x(idx_Ach_fd) * x(idx_P5e_o1fo2f))) + (- (P5e_alpha2f * x(idx_Bci_fd) * x(idx_P5e_o1fo2f))) + (- (P5e_k1 * x(idx_P4i_pol_free) * x(idx_P5e_o1fo2f)))); % a_neg_pool.fm_eq (EQUATION) % dx(idx_Ach_fm) f(idx_Ach_fm_eq) = ((2 * Ach_epsilon * x(idx_Ach_fd)) + (- (2 * Ach_delta * (x(idx_Ach_fm) ^ 2))) + (- (Ach_k_dm * x(idx_Ach_fm))) + (Tst_k_el_r * x(idx_Tst_ra))); % a_neg_pool.fd_eq (EQUATION) % dx(idx_Ach_fd) f(idx_Ach_fd_eq) = ((Ach_delta * (x(idx_Ach_fm) ^ 2)) + (- (Ach_epsilon * x(idx_Ach_fd))) + (- (P5e_alpha1t * x(idx_Ach_fd) * x(idx_P5e_o1fo2t))) + (- (P5e_alpha1f * x(idx_Ach_fd) * x(idx_P5e_o1fo2f))) + (P5e_beta1t * x(idx_P5e_o1to2t)) + (P5e_beta1f * x(idx_P5e_o1to2f)) + (- (Pzb_alpha1t * x(idx_Ach_fd) * x(idx_Pzb_o1fo2t))) + (- (Pzb_alpha1f * x(idx_Ach_fd) * x(idx_Pzb_o1fo2f))) + (Pzb_beta1t * x(idx_Pzb_o1to2t)) + (Pzb_beta1f * x(idx_Pzb_o1to2f)) + (- (P9b_alpha2t * x(idx_Ach_fd) * x(idx_P9b_o1to2f))) + (- (P9b_alpha2f * x(idx_Ach_fd) * x(idx_P9b_o1fo2f))) + (P9b_beta2t * x(idx_P9b_o1to2t)) + (P9b_beta2f * x(idx_P9b_o1fo2t)) + (- (Pn6_alpha2t * x(idx_Ach_fd) * x(idx_Pn6_o1to2f))) + (- (Pn6_alpha2f * x(idx_Ach_fd) * x(idx_Pn6_o1fo2f))) + (Pn6_beta2t * x(idx_Pn6_o1to2t)) + (Pn6_beta2f * x(idx_Pn6_o1fo2t)) + (- (Ach_k_dd * x(idx_Ach_fd)))); % nor1r_f_sf0.fp.product_eq (EQUATION) % dx(idx_F3m_z) f(idx_F3m_product_eq) = ((F3m_k_el_r * x(idx_F3m_ra)) + (- (F3m_k_d * x(idx_F3m_z)))); % nor1r_f_sf0.sips_off_1.sig_free_eq (EQUATION) % dx(idx_Sri_sig_free) f(idx_Sri_sig_free_eq) = (Sri_k_s + (- (Sri_k_d * x(idx_Sri_sig_free)))); % nor4raralc_r_it4.sips_off_1.sig_free_eq (EQUATION) % dx(idx_Ssm_sig_free) f(idx_Ssm_sig_free_eq) = (Ssm_k_s + (- (Ssm_k_d * x(idx_Ssm_sig_free)))); % nor4raralc_r_it4.sips_off_2.sig_free_eq (EQUATION) % dx(idx_Swe_sig_free) f(idx_Swe_sig_free_eq) = (Swe_k_s + (- (Swe_k_d * x(idx_Swe_sig_free)))); % nor4raralc_r_it5.sips_off_1.sig_free_eq (EQUATION) % dx(idx_Sy7_sig_free) f(idx_Sy7_sig_free_eq) = (Sy7_k_s + (- (Sy7_k_d * x(idx_Sy7_sig_free)))); % nor4raralc_r_it5.sips_off_2.sig_free_eq (EQUATION) % dx(idx_S1z_sig_free) f(idx_S1z_sig_free_eq) = (S1z_k_s + (- (S1z_k_d * x(idx_S1z_sig_free)))); % nor4riracc_r_it2.sips_off_2.sig_free_eq (EQUATION) % dx(idx_Sjg_sig_free) f(idx_Sjg_sig_free_eq) = (Sjg_k_s + (- (Sjg_k_d * x(idx_Sjg_sig_free)))); % nor4riracc_r_it6.sips_off_2.sig_free_eq (EQUATION) % dx(idx_Sq7_sig_free) f(idx_Sq7_sig_free_eq) = (Sq7_k_s + (- (Sq7_k_d * x(idx_Sq7_sig_free)))); % nor4rirall_r_it3.sips_off_2.sig_free_eq (EQUATION) % dx(idx_Sxb_sig_free) f(idx_Sxb_sig_free_eq) = (Sxb_k_s + (- (Sxb_k_d * x(idx_Sxb_sig_free)))); % nor4rirall_r_it7.sips_off_2.sig_free_eq (EQUATION) % dx(idx_S42_sig_free) f(idx_S42_sig_free_eq) = (S42_k_s + (- (S42_k_d * x(idx_S42_sig_free)))); % not3_ip2.sips_off_1.sig_free_eq (EQUATION) % dx(idx_Sug_sig_free) f(idx_Sug_sig_free_eq) = (Sug_k_s + (- (Sug_k_d * x(idx_Sug_sig_free)))); % not3_ip3.sips_off_1.sig_free_eq (EQUATION) % dx(idx_S0a_sig_free) f(idx_S0a_sig_free_eq) = (S0a_k_s + (- (S0a_k_d * x(idx_S0a_sig_free)))); varargout{1}=f; %Mass Matrix Calculation case 'mass' % % We generate a sparse matrix b and fill up the entries for % all equations. Since usually the rows are zero or have one % diagonal entry this is justified. The rows are % the equation number the columns are the (derivative) % state numbers % b=sparse(234,234); % ribpool.r_free_eq (EQUATION) b(idx_Rxm_r_free_eq,idx_Rxm_r_free) = 1.0d0; % dx(idx_Rxm_r_free) % % polpool.pol_free_eq (EQUATION) b(idx_P4i_pol_free_eq,idx_P4i_pol_free) = 1.0d0; % dx(idx_P4i_pol_free) % % not3_ip3.tf.ru_eq (EQUATION) b(idx_Tow_ru_eq,idx_Tow_ru) = 1.0d0; % dx(idx_Tow_ru) % % not3_ip3.tf.ra_eq (EQUATION) b(idx_Tow_ra_eq,idx_Tow_ra) = 1.0d0; % dx(idx_Tow_ra) % % not3_ip3.tf.pola_eq (EQUATION) b(idx_Tow_pola_eq,idx_Tow_pola) = 1.0d0; % dx(idx_Tow_pola) % % not3_ip3.tes.polt_eq (EQUATION) b(idx_Tov_polt_eq,idx_Tov_polt) = 1.0d0; % dx(idx_Tov_polt) % % not3_ip3.te.polt_eq (EQUATION) b(idx_Tuk_polt_eq,idx_Tuk_polt) = 1.0d0; % dx(idx_Tuk_polt) % % not3_ip3.sips_off_1.sig_free_eq (EQUATION) b(idx_S0a_sig_free_eq,idx_S0a_sig_free) = 1.0d0; % dx(idx_S0a_sig_free) % % not3_ip3.s0.pols_eq (EQUATION) b(idx_S2y_pols_eq,idx_S2y_pols) = 1.0d0; % dx(idx_S2y_pols) % % not3_ip3.rcnot.rb1n_eq (EQUATION) b(idx_R35_rb1n_eq,idx_R35_rb1n) = 1.0d0; % dx(idx_R35_rb1n) % % not3_ip3.rcnot.polb_eq (EQUATION) b(idx_R35_polb_eq,idx_R35_polb) = 1.0d0; % dx(idx_R35_polb) % % not3_ip3.rcnot.b1n_eq (EQUATION) b(idx_R35_b1n_eq,idx_R35_b1n) = 1.0d0; % dx(idx_R35_b1n) % % not3_ip3.rcnot.b1f_eq (EQUATION) b(idx_R35_b1f_eq,idx_R35_b1f) = 1.0d0; % dx(idx_R35_b1f) % % not3_ip3.paanot3pos_s.polo1t_eq (EQUATION) b(idx_Prq_polo1t_eq,idx_Prq_polo1t) = 1.0d0; % dx(idx_Prq_polo1t) % % not3_ip3.paanot3pos_s.o1t_eq (EQUATION) b(idx_Prq_o1t_eq,idx_Prq_o1t) = 1.0d0; % dx(idx_Prq_o1t) % % not3_ip3.paanot3pos_s.o1f_eq (EQUATION) b(idx_Prq_o1f_eq,idx_Prq_o1f) = 1.0d0; % dx(idx_Prq_o1f) % % not3_ip3.p0not3pos.ppol_eq (EQUATION) b(idx_Psq_ppol_eq,idx_Psq_ppol) = 1.0d0; % dx(idx_Psq_ppol) % % not3_ip3.p0not3pos.p_free_eq (EQUATION) b(idx_Psq_p_free_eq,idx_Psq_p_free) = 1.0d0; % dx(idx_Psq_p_free) % % not3_ip2.tf.ru_eq (EQUATION) b(idx_Tj2_ru_eq,idx_Tj2_ru) = 1.0d0; % dx(idx_Tj2_ru) % % not3_ip2.tf.ra_eq (EQUATION) b(idx_Tj2_ra_eq,idx_Tj2_ra) = 1.0d0; % dx(idx_Tj2_ra) % % not3_ip2.tf.pola_eq (EQUATION) b(idx_Tj2_pola_eq,idx_Tj2_pola) = 1.0d0; % dx(idx_Tj2_pola) % % not3_ip2.tes.polt_eq (EQUATION) b(idx_Tj1_polt_eq,idx_Tj1_polt) = 1.0d0; % dx(idx_Tj1_polt) % % not3_ip2.te.polt_eq (EQUATION) b(idx_Toq_polt_eq,idx_Toq_polt) = 1.0d0; % dx(idx_Toq_polt) % % not3_ip2.sips_off_1.sig_free_eq (EQUATION) b(idx_Sug_sig_free_eq,idx_Sug_sig_free) = 1.0d0; % dx(idx_Sug_sig_free) % % not3_ip2.s0.pols_eq (EQUATION) b(idx_Sx4_pols_eq,idx_Sx4_pols) = 1.0d0; % dx(idx_Sx4_pols) % % not3_ip2.rcnot.rb1n_eq (EQUATION) b(idx_Rxb_rb1n_eq,idx_Rxb_rb1n) = 1.0d0; % dx(idx_Rxb_rb1n) % % not3_ip2.rcnot.polb_eq (EQUATION) b(idx_Rxb_polb_eq,idx_Rxb_polb) = 1.0d0; % dx(idx_Rxb_polb) % % not3_ip2.rcnot.b1n_eq (EQUATION) b(idx_Rxb_b1n_eq,idx_Rxb_b1n) = 1.0d0; % dx(idx_Rxb_b1n) % % not3_ip2.rcnot.b1f_eq (EQUATION) b(idx_Rxb_b1f_eq,idx_Rxb_b1f) = 1.0d0; % dx(idx_Rxb_b1f) % % not3_ip2.paanot3pos_s.polo1t_eq (EQUATION) b(idx_Plw_polo1t_eq,idx_Plw_polo1t) = 1.0d0; % dx(idx_Plw_polo1t) % % not3_ip2.paanot3pos_s.o1t_eq (EQUATION) b(idx_Plw_o1t_eq,idx_Plw_o1t) = 1.0d0; % dx(idx_Plw_o1t) % % not3_ip2.paanot3pos_s.o1f_eq (EQUATION) b(idx_Plw_o1f_eq,idx_Plw_o1f) = 1.0d0; % dx(idx_Plw_o1f) % % not3_ip2.p0not3pos.ppol_eq (EQUATION) b(idx_Pmw_ppol_eq,idx_Pmw_ppol) = 1.0d0; % dx(idx_Pmw_ppol) % % not3_ip2.p0not3pos.p_free_eq (EQUATION) b(idx_Pmw_p_free_eq,idx_Pmw_p_free) = 1.0d0; % dx(idx_Pmw_p_free) % % not0_ip1.tf_2.ru_eq (EQUATION) b(idx_Tyn_ru_eq,idx_Tyn_ru) = 1.0d0; % dx(idx_Tyn_ru) % % not0_ip1.tf_2.ra_eq (EQUATION) b(idx_Tyn_ra_eq,idx_Tyn_ra) = 1.0d0; % dx(idx_Tyn_ra) % % not0_ip1.tf_2.pola_eq (EQUATION) b(idx_Tyn_pola_eq,idx_Tyn_pola) = 1.0d0; % dx(idx_Tyn_pola) % % not0_ip1.tf.ru_eq (EQUATION) b(idx_Trw_ru_eq,idx_Trw_ru) = 1.0d0; % dx(idx_Trw_ru) % % not0_ip1.tf.ra_eq (EQUATION) b(idx_Trw_ra_eq,idx_Trw_ra) = 1.0d0; % dx(idx_Trw_ra) % % not0_ip1.tf.pola_eq (EQUATION) b(idx_Trw_pola_eq,idx_Trw_pola) = 1.0d0; % dx(idx_Trw_pola) % % not0_ip1.te_2.polt_eq (EQUATION) b(idx_T4b_polt_eq,idx_T4b_polt) = 1.0d0; % dx(idx_T4b_polt) % % not0_ip1.te.polt_eq (EQUATION) b(idx_Txk_polt_eq,idx_Txk_polt) = 1.0d0; % dx(idx_Txk_polt) % % not0_ip1.r0_2.rb_eq (EQUATION) b(idx_Raw_rb_eq,idx_Raw_rb) = 1.0d0; % dx(idx_Raw_rb) % % not0_ip1.r0_2.polb_eq (EQUATION) b(idx_Raw_polb_eq,idx_Raw_polb) = 1.0d0; % dx(idx_Raw_polb) % % not0_ip1.r0_2.b_free_eq (EQUATION) b(idx_Raw_b_free_eq,idx_Raw_b_free) = 1.0d0; % dx(idx_Raw_b_free) % % not0_ip1.r0.rb_eq (EQUATION) b(idx_R45_rb_eq,idx_R45_rb) = 1.0d0; % dx(idx_R45_rb) % % not0_ip1.r0.polb_eq (EQUATION) b(idx_R45_polb_eq,idx_R45_polb) = 1.0d0; % dx(idx_R45_polb) % % not0_ip1.r0.b_free_eq (EQUATION) b(idx_R45_b_free_eq,idx_R45_b_free) = 1.0d0; % dx(idx_R45_b_free) % % not0_ip1.prinot0pos.polo1f_eq (EQUATION) b(idx_Pfe_polo1f_eq,idx_Pfe_polo1f) = 1.0d0; % dx(idx_Pfe_polo1f) % % not0_ip1.prinot0pos.o1t_eq (EQUATION) b(idx_Pfe_o1t_eq,idx_Pfe_o1t) = 1.0d0; % dx(idx_Pfe_o1t) % % not0_ip1.prinot0pos.o1f_eq (EQUATION) b(idx_Pfe_o1f_eq,idx_Pfe_o1f) = 1.0d0; % dx(idx_Pfe_o1f) % % not0_ip1.p0not0pos.ppol_eq (EQUATION) b(idx_Pxw_ppol_eq,idx_Pxw_ppol) = 1.0d0; % dx(idx_Pxw_ppol) % % not0_ip1.p0not0pos.p_free_eq (EQUATION) b(idx_Pxw_p_free_eq,idx_Pxw_p_free) = 1.0d0; % dx(idx_Pxw_p_free) % % not0_ip0.tf_2.ru_eq (EQUATION) b(idx_Tst_ru_eq,idx_Tst_ru) = 1.0d0; % dx(idx_Tst_ru) % % not0_ip0.tf_2.ra_eq (EQUATION) b(idx_Tst_ra_eq,idx_Tst_ra) = 1.0d0; % dx(idx_Tst_ra) % % not0_ip0.tf_2.pola_eq (EQUATION) b(idx_Tst_pola_eq,idx_Tst_pola) = 1.0d0; % dx(idx_Tst_pola) % % not0_ip0.tf.ru_eq (EQUATION) b(idx_Tm2_ru_eq,idx_Tm2_ru) = 1.0d0; % dx(idx_Tm2_ru) % % not0_ip0.tf.ra_eq (EQUATION) b(idx_Tm2_ra_eq,idx_Tm2_ra) = 1.0d0; % dx(idx_Tm2_ra) % % not0_ip0.tf.pola_eq (EQUATION) b(idx_Tm2_pola_eq,idx_Tm2_pola) = 1.0d0; % dx(idx_Tm2_pola) % % not0_ip0.te_2.polt_eq (EQUATION) b(idx_Tyh_polt_eq,idx_Tyh_polt) = 1.0d0; % dx(idx_Tyh_polt) % % not0_ip0.te.polt_eq (EQUATION) b(idx_Trq_polt_eq,idx_Trq_polt) = 1.0d0; % dx(idx_Trq_polt) % % not0_ip0.r0_2.rb_eq (EQUATION) b(idx_R52_rb_eq,idx_R52_rb) = 1.0d0; % dx(idx_R52_rb) % % not0_ip0.r0_2.polb_eq (EQUATION) b(idx_R52_polb_eq,idx_R52_polb) = 1.0d0; % dx(idx_R52_polb) % % not0_ip0.r0_2.b_free_eq (EQUATION) b(idx_R52_b_free_eq,idx_R52_b_free) = 1.0d0; % dx(idx_R52_b_free) % % not0_ip0.r0.rb_eq (EQUATION) b(idx_Ryb_rb_eq,idx_Ryb_rb) = 1.0d0; % dx(idx_Ryb_rb) % % not0_ip0.r0.polb_eq (EQUATION) b(idx_Ryb_polb_eq,idx_Ryb_polb) = 1.0d0; % dx(idx_Ryb_polb) % % not0_ip0.r0.b_free_eq (EQUATION) b(idx_Ryb_b_free_eq,idx_Ryb_b_free) = 1.0d0; % dx(idx_Ryb_b_free) % % not0_ip0.prinot0pos.polo1f_eq (EQUATION) b(idx_P9k_polo1f_eq,idx_P9k_polo1f) = 1.0d0; % dx(idx_P9k_polo1f) % % not0_ip0.prinot0pos.o1t_eq (EQUATION) b(idx_P9k_o1t_eq,idx_P9k_o1t) = 1.0d0; % dx(idx_P9k_o1t) % % not0_ip0.prinot0pos.o1f_eq (EQUATION) b(idx_P9k_o1f_eq,idx_P9k_o1f) = 1.0d0; % dx(idx_P9k_o1f) % % not0_ip0.p0not0pos.ppol_eq (EQUATION) b(idx_Ps2_ppol_eq,idx_Ps2_ppol) = 1.0d0; % dx(idx_Ps2_ppol) % % not0_ip0.p0not0pos.p_free_eq (EQUATION) b(idx_Ps2_p_free_eq,idx_Ps2_p_free) = 1.0d0; % dx(idx_Ps2_p_free) % % nor4ririlc_r_it1.tf.ru_eq (EQUATION) b(idx_T6u_ru_eq,idx_T6u_ru) = 1.0d0; % dx(idx_T6u_ru) % % nor4ririlc_r_it1.tf.ra_eq (EQUATION) b(idx_T6u_ra_eq,idx_T6u_ra) = 1.0d0; % dx(idx_T6u_ra) % % nor4ririlc_r_it1.tf.pola_eq (EQUATION) b(idx_T6u_pola_eq,idx_T6u_pola) = 1.0d0; % dx(idx_T6u_pola) % % nor4ririlc_r_it1.te.polt_eq (EQUATION) b(idx_Tcl_polt_eq,idx_Tcl_polt) = 1.0d0; % dx(idx_Tcl_polt) % % nor4ririlc_r_it1.rclnor.rb1nb2n_eq (EQUATION) b(idx_R67_rb1nb2n_eq,idx_R67_rb1nb2n) = 1.0d0; % dx(idx_R67_rb1nb2n) % % nor4ririlc_r_it1.rclnor.polb_eq (EQUATION) b(idx_R67_polb_eq,idx_R67_polb) = 1.0d0; % dx(idx_R67_polb) % % nor4ririlc_r_it1.rclnor.b1nb2n_eq (EQUATION) b(idx_R67_b1nb2n_eq,idx_R67_b1nb2n) = 1.0d0; % dx(idx_R67_b1nb2n) % % nor4ririlc_r_it1.rclnor.b1nb2f_eq (EQUATION) b(idx_R67_b1nb2f_eq,idx_R67_b1nb2f) = 1.0d0; % dx(idx_R67_b1nb2f) % % nor4ririlc_r_it1.rclnor.b1fb2n_eq (EQUATION) b(idx_R67_b1fb2n_eq,idx_R67_b1fb2n) = 1.0d0; % dx(idx_R67_b1fb2n) % % nor4ririlc_r_it1.rclnor.b1fb2f_eq (EQUATION) b(idx_R67_b1fb2f_eq,idx_R67_b1fb2f) = 1.0d0; % dx(idx_R67_b1fb2f) % % nor4ririlc_r_it1.pririnor.polo1fo2f_eq (EQUATION) b(idx_Pnd_polo1fo2f_eq,idx_Pnd_polo1fo2f) = 1.0d0; % dx(idx_Pnd_polo1fo2f) % % nor4ririlc_r_it1.pririnor.o1to2t_eq (EQUATION) b(idx_Pnd_o1to2t_eq,idx_Pnd_o1to2t) = 1.0d0; % dx(idx_Pnd_o1to2t) % % nor4ririlc_r_it1.pririnor.o1to2f_eq (EQUATION) b(idx_Pnd_o1to2f_eq,idx_Pnd_o1to2f) = 1.0d0; % dx(idx_Pnd_o1to2f) % % nor4ririlc_r_it1.pririnor.o1fo2t_eq (EQUATION) b(idx_Pnd_o1fo2t_eq,idx_Pnd_o1fo2t) = 1.0d0; % dx(idx_Pnd_o1fo2t) % % nor4ririlc_r_it1.pririnor.o1fo2f_eq (EQUATION) b(idx_Pnd_o1fo2f_eq,idx_Pnd_o1fo2f) = 1.0d0; % dx(idx_Pnd_o1fo2f) % % nor4ririlc_r_it0.tf.ru_eq (EQUATION) b(idx_Tgt_ru_eq,idx_Tgt_ru) = 1.0d0; % dx(idx_Tgt_ru) % % nor4ririlc_r_it0.tf.ra_eq (EQUATION) b(idx_Tgt_ra_eq,idx_Tgt_ra) = 1.0d0; % dx(idx_Tgt_ra) % % nor4ririlc_r_it0.tf.pola_eq (EQUATION) b(idx_Tgt_pola_eq,idx_Tgt_pola) = 1.0d0; % dx(idx_Tgt_pola) % % nor4ririlc_r_it0.te.polt_eq (EQUATION) b(idx_T70_polt_eq,idx_T70_polt) = 1.0d0; % dx(idx_T70_polt) % % nor4ririlc_r_it0.rclnor.rb1nb2n_eq (EQUATION) b(idx_R0n_rb1nb2n_eq,idx_R0n_rb1nb2n) = 1.0d0; % dx(idx_R0n_rb1nb2n) % % nor4ririlc_r_it0.rclnor.polb_eq (EQUATION) b(idx_R0n_polb_eq,idx_R0n_polb) = 1.0d0; % dx(idx_R0n_polb) % % nor4ririlc_r_it0.rclnor.b1nb2n_eq (EQUATION) b(idx_R0n_b1nb2n_eq,idx_R0n_b1nb2n) = 1.0d0; % dx(idx_R0n_b1nb2n) % % nor4ririlc_r_it0.rclnor.b1nb2f_eq (EQUATION) b(idx_R0n_b1nb2f_eq,idx_R0n_b1nb2f) = 1.0d0; % dx(idx_R0n_b1nb2f) % % nor4ririlc_r_it0.rclnor.b1fb2n_eq (EQUATION) b(idx_R0n_b1fb2n_eq,idx_R0n_b1fb2n) = 1.0d0; % dx(idx_R0n_b1fb2n) % % nor4ririlc_r_it0.rclnor.b1fb2f_eq (EQUATION) b(idx_R0n_b1fb2f_eq,idx_R0n_b1fb2f) = 1.0d0; % dx(idx_R0n_b1fb2f) % % nor4ririlc_r_it0.pririnor.polo1fo2f_eq (EQUATION) b(idx_Pht_polo1fo2f_eq,idx_Pht_polo1fo2f) = 1.0d0; % dx(idx_Pht_polo1fo2f) % % nor4ririlc_r_it0.pririnor.o1to2t_eq (EQUATION) b(idx_Pht_o1to2t_eq,idx_Pht_o1to2t) = 1.0d0; % dx(idx_Pht_o1to2t) % % nor4ririlc_r_it0.pririnor.o1to2f_eq (EQUATION) b(idx_Pht_o1to2f_eq,idx_Pht_o1to2f) = 1.0d0; % dx(idx_Pht_o1to2f) % % nor4ririlc_r_it0.pririnor.o1fo2t_eq (EQUATION) b(idx_Pht_o1fo2t_eq,idx_Pht_o1fo2t) = 1.0d0; % dx(idx_Pht_o1fo2t) % % nor4ririlc_r_it0.pririnor.o1fo2f_eq (EQUATION) b(idx_Pht_o1fo2f_eq,idx_Pht_o1fo2f) = 1.0d0; % dx(idx_Pht_o1fo2f) % % nor4rirall_r_it7.tf.ru_eq (EQUATION) b(idx_T34_ru_eq,idx_T34_ru) = 1.0d0; % dx(idx_T34_ru) % % nor4rirall_r_it7.tf.ra_eq (EQUATION) b(idx_T34_ra_eq,idx_T34_ra) = 1.0d0; % dx(idx_T34_ra) % % nor4rirall_r_it7.tf.pola_eq (EQUATION) b(idx_T34_pola_eq,idx_T34_pola) = 1.0d0; % dx(idx_T34_pola) % % nor4rirall_r_it7.te.polt_eq (EQUATION) b(idx_T8u_polt_eq,idx_T8u_polt) = 1.0d0; % dx(idx_T8u_polt) % % nor4rirall_r_it7.sips_off_2.sig_free_eq (EQUATION) b(idx_S42_sig_free_eq,idx_S42_sig_free) = 1.0d0; % dx(idx_S42_sig_free) % % nor4rirall_r_it7.rllnor.rb1nb2n_eq (EQUATION) b(idx_Rkb_rb1nb2n_eq,idx_Rkb_rb1nb2n) = 1.0d0; % dx(idx_Rkb_rb1nb2n) % % nor4rirall_r_it7.rllnor.polb_eq (EQUATION) b(idx_Rkb_polb_eq,idx_Rkb_polb) = 1.0d0; % dx(idx_Rkb_polb) % % nor4rirall_r_it7.rllnor.b1nb2n_eq (EQUATION) b(idx_Rkb_b1nb2n_eq,idx_Rkb_b1nb2n) = 1.0d0; % dx(idx_Rkb_b1nb2n) % % nor4rirall_r_it7.rllnor.b1nb2f_eq (EQUATION) b(idx_Rkb_b1nb2f_eq,idx_Rkb_b1nb2f) = 1.0d0; % dx(idx_Rkb_b1nb2f) % % nor4rirall_r_it7.rllnor.b1fb2n_eq (EQUATION) b(idx_Rkb_b1fb2n_eq,idx_Rkb_b1fb2n) = 1.0d0; % dx(idx_Rkb_b1fb2n) % % nor4rirall_r_it7.rllnor.b1fb2f_eq (EQUATION) b(idx_Rkb_b1fb2f_eq,idx_Rkb_b1fb2f) = 1.0d0; % dx(idx_Rkb_b1fb2f) % % nor4rirall_r_it7.priranor.polo1fo2f_eq (EQUATION) b(idx_Pn6_polo1fo2f_eq,idx_Pn6_polo1fo2f) = 1.0d0; % dx(idx_Pn6_polo1fo2f) % % nor4rirall_r_it7.priranor.o1to2t_eq (EQUATION) b(idx_Pn6_o1to2t_eq,idx_Pn6_o1to2t) = 1.0d0; % dx(idx_Pn6_o1to2t) % % nor4rirall_r_it7.priranor.o1to2f_eq (EQUATION) b(idx_Pn6_o1to2f_eq,idx_Pn6_o1to2f) = 1.0d0; % dx(idx_Pn6_o1to2f) % % nor4rirall_r_it7.priranor.o1fo2t_eq (EQUATION) b(idx_Pn6_o1fo2t_eq,idx_Pn6_o1fo2t) = 1.0d0; % dx(idx_Pn6_o1fo2t) % % nor4rirall_r_it7.priranor.o1fo2f_eq (EQUATION) b(idx_Pn6_o1fo2f_eq,idx_Pn6_o1fo2f) = 1.0d0; % dx(idx_Pn6_o1fo2f) % % nor4rirall_r_it3.tf.ru_eq (EQUATION) b(idx_Twd_ru_eq,idx_Twd_ru) = 1.0d0; % dx(idx_Twd_ru) % % nor4rirall_r_it3.tf.ra_eq (EQUATION) b(idx_Twd_ra_eq,idx_Twd_ra) = 1.0d0; % dx(idx_Twd_ra) % % nor4rirall_r_it3.tf.pola_eq (EQUATION) b(idx_Twd_pola_eq,idx_Twd_pola) = 1.0d0; % dx(idx_Twd_pola) % % nor4rirall_r_it3.te.polt_eq (EQUATION) b(idx_T23_polt_eq,idx_T23_polt) = 1.0d0; % dx(idx_T23_polt) % % nor4rirall_r_it3.sips_off_2.sig_free_eq (EQUATION) b(idx_Sxb_sig_free_eq,idx_Sxb_sig_free) = 1.0d0; % dx(idx_Sxb_sig_free) % % nor4rirall_r_it3.rllnor.rb1nb2n_eq (EQUATION) b(idx_Rdk_rb1nb2n_eq,idx_Rdk_rb1nb2n) = 1.0d0; % dx(idx_Rdk_rb1nb2n) % % nor4rirall_r_it3.rllnor.polb_eq (EQUATION) b(idx_Rdk_polb_eq,idx_Rdk_polb) = 1.0d0; % dx(idx_Rdk_polb) % % nor4rirall_r_it3.rllnor.b1nb2n_eq (EQUATION) b(idx_Rdk_b1nb2n_eq,idx_Rdk_b1nb2n) = 1.0d0; % dx(idx_Rdk_b1nb2n) % % nor4rirall_r_it3.rllnor.b1nb2f_eq (EQUATION) b(idx_Rdk_b1nb2f_eq,idx_Rdk_b1nb2f) = 1.0d0; % dx(idx_Rdk_b1nb2f) % % nor4rirall_r_it3.rllnor.b1fb2n_eq (EQUATION) b(idx_Rdk_b1fb2n_eq,idx_Rdk_b1fb2n) = 1.0d0; % dx(idx_Rdk_b1fb2n) % % nor4rirall_r_it3.rllnor.b1fb2f_eq (EQUATION) b(idx_Rdk_b1fb2f_eq,idx_Rdk_b1fb2f) = 1.0d0; % dx(idx_Rdk_b1fb2f) % % nor4rirall_r_it3.priranor.polo1fo2f_eq (EQUATION) b(idx_Ps3_polo1fo2f_eq,idx_Ps3_polo1fo2f) = 1.0d0; % dx(idx_Ps3_polo1fo2f) % % nor4rirall_r_it3.priranor.o1to2t_eq (EQUATION) b(idx_Ps3_o1to2t_eq,idx_Ps3_o1to2t) = 1.0d0; % dx(idx_Ps3_o1to2t) % % nor4rirall_r_it3.priranor.o1to2f_eq (EQUATION) b(idx_Ps3_o1to2f_eq,idx_Ps3_o1to2f) = 1.0d0; % dx(idx_Ps3_o1to2f) % % nor4rirall_r_it3.priranor.o1fo2t_eq (EQUATION) b(idx_Ps3_o1fo2t_eq,idx_Ps3_o1fo2t) = 1.0d0; % dx(idx_Ps3_o1fo2t) % % nor4rirall_r_it3.priranor.o1fo2f_eq (EQUATION) b(idx_Ps3_o1fo2f_eq,idx_Ps3_o1fo2f) = 1.0d0; % dx(idx_Ps3_o1fo2f) % % nor4riracc_r_it6.tf.ru_eq (EQUATION) b(idx_Tp8_ru_eq,idx_Tp8_ru) = 1.0d0; % dx(idx_Tp8_ru) % % nor4riracc_r_it6.tf.ra_eq (EQUATION) b(idx_Tp8_ra_eq,idx_Tp8_ra) = 1.0d0; % dx(idx_Tp8_ra) % % nor4riracc_r_it6.tf.pola_eq (EQUATION) b(idx_Tp8_pola_eq,idx_Tp8_pola) = 1.0d0; % dx(idx_Tp8_pola) % % nor4riracc_r_it6.te.polt_eq (EQUATION) b(idx_Tuz_polt_eq,idx_Tuz_polt) = 1.0d0; % dx(idx_Tuz_polt) % % nor4riracc_r_it6.sips_off_2.sig_free_eq (EQUATION) b(idx_Sq7_sig_free_eq,idx_Sq7_sig_free) = 1.0d0; % dx(idx_Sq7_sig_free) % % nor4riracc_r_it6.rccnor.rb1nb2n_eq (EQUATION) b(idx_Rcl_rb1nb2n_eq,idx_Rcl_rb1nb2n) = 1.0d0; % dx(idx_Rcl_rb1nb2n) % % nor4riracc_r_it6.rccnor.polb_eq (EQUATION) b(idx_Rcl_polb_eq,idx_Rcl_polb) = 1.0d0; % dx(idx_Rcl_polb) % % nor4riracc_r_it6.rccnor.b1nb2n_eq (EQUATION) b(idx_Rcl_b1nb2n_eq,idx_Rcl_b1nb2n) = 1.0d0; % dx(idx_Rcl_b1nb2n) % % nor4riracc_r_it6.rccnor.b1nb2f_eq (EQUATION) b(idx_Rcl_b1nb2f_eq,idx_Rcl_b1nb2f) = 1.0d0; % dx(idx_Rcl_b1nb2f) % % nor4riracc_r_it6.rccnor.b1fb2n_eq (EQUATION) b(idx_Rcl_b1fb2n_eq,idx_Rcl_b1fb2n) = 1.0d0; % dx(idx_Rcl_b1fb2n) % % nor4riracc_r_it6.rccnor.b1fb2f_eq (EQUATION) b(idx_Rcl_b1fb2f_eq,idx_Rcl_b1fb2f) = 1.0d0; % dx(idx_Rcl_b1fb2f) % % nor4riracc_r_it6.priranor.polo1fo2f_eq (EQUATION) b(idx_P9b_polo1fo2f_eq,idx_P9b_polo1fo2f) = 1.0d0; % dx(idx_P9b_polo1fo2f) % % nor4riracc_r_it6.priranor.o1to2t_eq (EQUATION) b(idx_P9b_o1to2t_eq,idx_P9b_o1to2t) = 1.0d0; % dx(idx_P9b_o1to2t) % % nor4riracc_r_it6.priranor.o1to2f_eq (EQUATION) b(idx_P9b_o1to2f_eq,idx_P9b_o1to2f) = 1.0d0; % dx(idx_P9b_o1to2f) % % nor4riracc_r_it6.priranor.o1fo2t_eq (EQUATION) b(idx_P9b_o1fo2t_eq,idx_P9b_o1fo2t) = 1.0d0; % dx(idx_P9b_o1fo2t) % % nor4riracc_r_it6.priranor.o1fo2f_eq (EQUATION) b(idx_P9b_o1fo2f_eq,idx_P9b_o1fo2f) = 1.0d0; % dx(idx_P9b_o1fo2f) % % nor4riracc_r_it2.tf.ru_eq (EQUATION) b(idx_Tih_ru_eq,idx_Tih_ru) = 1.0d0; % dx(idx_Tih_ru) % % nor4riracc_r_it2.tf.ra_eq (EQUATION) b(idx_Tih_ra_eq,idx_Tih_ra) = 1.0d0; % dx(idx_Tih_ra) % % nor4riracc_r_it2.tf.pola_eq (EQUATION) b(idx_Tih_pola_eq,idx_Tih_pola) = 1.0d0; % dx(idx_Tih_pola) % % nor4riracc_r_it2.te.polt_eq (EQUATION) b(idx_Tzw_polt_eq,idx_Tzw_polt) = 1.0d0; % dx(idx_Tzw_polt) % % nor4riracc_r_it2.sips_off_2.sig_free_eq (EQUATION) b(idx_Sjg_sig_free_eq,idx_Sjg_sig_free) = 1.0d0; % dx(idx_Sjg_sig_free) % % nor4riracc_r_it2.rccnor.rb1nb2n_eq (EQUATION) b(idx_Rqa_rb1nb2n_eq,idx_Rqa_rb1nb2n) = 1.0d0; % dx(idx_Rqa_rb1nb2n) % % nor4riracc_r_it2.rccnor.polb_eq (EQUATION) b(idx_Rqa_polb_eq,idx_Rqa_polb) = 1.0d0; % dx(idx_Rqa_polb) % % nor4riracc_r_it2.rccnor.b1nb2n_eq (EQUATION) b(idx_Rqa_b1nb2n_eq,idx_Rqa_b1nb2n) = 1.0d0; % dx(idx_Rqa_b1nb2n) % % nor4riracc_r_it2.rccnor.b1nb2f_eq (EQUATION) b(idx_Rqa_b1nb2f_eq,idx_Rqa_b1nb2f) = 1.0d0; % dx(idx_Rqa_b1nb2f) % % nor4riracc_r_it2.rccnor.b1fb2n_eq (EQUATION) b(idx_Rqa_b1fb2n_eq,idx_Rqa_b1fb2n) = 1.0d0; % dx(idx_Rqa_b1fb2n) % % nor4riracc_r_it2.rccnor.b1fb2f_eq (EQUATION) b(idx_Rqa_b1fb2f_eq,idx_Rqa_b1fb2f) = 1.0d0; % dx(idx_Rqa_b1fb2f) % % nor4riracc_r_it2.priranor.polo1fo2f_eq (EQUATION) b(idx_Pe8_polo1fo2f_eq,idx_Pe8_polo1fo2f) = 1.0d0; % dx(idx_Pe8_polo1fo2f) % % nor4riracc_r_it2.priranor.o1to2t_eq (EQUATION) b(idx_Pe8_o1to2t_eq,idx_Pe8_o1to2t) = 1.0d0; % dx(idx_Pe8_o1to2t) % % nor4riracc_r_it2.priranor.o1to2f_eq (EQUATION) b(idx_Pe8_o1to2f_eq,idx_Pe8_o1to2f) = 1.0d0; % dx(idx_Pe8_o1to2f) % % nor4riracc_r_it2.priranor.o1fo2t_eq (EQUATION) b(idx_Pe8_o1fo2t_eq,idx_Pe8_o1fo2t) = 1.0d0; % dx(idx_Pe8_o1fo2t) % % nor4riracc_r_it2.priranor.o1fo2f_eq (EQUATION) b(idx_Pe8_o1fo2f_eq,idx_Pe8_o1fo2f) = 1.0d0; % dx(idx_Pe8_o1fo2f) % % nor4raralc_r_it5.tf.ru_eq (EQUATION) b(idx_T10_ru_eq,idx_T10_ru) = 1.0d0; % dx(idx_T10_ru) % % nor4raralc_r_it5.tf.ra_eq (EQUATION) b(idx_T10_ra_eq,idx_T10_ra) = 1.0d0; % dx(idx_T10_ra) % % nor4raralc_r_it5.tf.pola_eq (EQUATION) b(idx_T10_pola_eq,idx_T10_pola) = 1.0d0; % dx(idx_T10_pola) % % nor4raralc_r_it5.te.polt_eq (EQUATION) b(idx_T6r_polt_eq,idx_T6r_polt) = 1.0d0; % dx(idx_T6r_polt) % % nor4raralc_r_it5.sips_off_2.sig_free_eq (EQUATION) b(idx_S1z_sig_free_eq,idx_S1z_sig_free) = 1.0d0; % dx(idx_S1z_sig_free) % % nor4raralc_r_it5.sips_off_1.sig_free_eq (EQUATION) b(idx_Sy7_sig_free_eq,idx_Sy7_sig_free) = 1.0d0; % dx(idx_Sy7_sig_free) % % nor4raralc_r_it5.rclnor.rb1nb2n_eq (EQUATION) b(idx_Rc2_rb1nb2n_eq,idx_Rc2_rb1nb2n) = 1.0d0; % dx(idx_Rc2_rb1nb2n) % % nor4raralc_r_it5.rclnor.polb_eq (EQUATION) b(idx_Rc2_polb_eq,idx_Rc2_polb) = 1.0d0; % dx(idx_Rc2_polb) % % nor4raralc_r_it5.rclnor.b1nb2n_eq (EQUATION) b(idx_Rc2_b1nb2n_eq,idx_Rc2_b1nb2n) = 1.0d0; % dx(idx_Rc2_b1nb2n) % % nor4raralc_r_it5.rclnor.b1nb2f_eq (EQUATION) b(idx_Rc2_b1nb2f_eq,idx_Rc2_b1nb2f) = 1.0d0; % dx(idx_Rc2_b1nb2f) % % nor4raralc_r_it5.rclnor.b1fb2n_eq (EQUATION) b(idx_Rc2_b1fb2n_eq,idx_Rc2_b1fb2n) = 1.0d0; % dx(idx_Rc2_b1fb2n) % % nor4raralc_r_it5.rclnor.b1fb2f_eq (EQUATION) b(idx_Rc2_b1fb2f_eq,idx_Rc2_b1fb2f) = 1.0d0; % dx(idx_Rc2_b1fb2f) % % nor4raralc_r_it5.praranor.polo1fo2f_eq (EQUATION) b(idx_Pzb_polo1fo2f_eq,idx_Pzb_polo1fo2f) = 1.0d0; % dx(idx_Pzb_polo1fo2f) % % nor4raralc_r_it5.praranor.o1to2t_eq (EQUATION) b(idx_Pzb_o1to2t_eq,idx_Pzb_o1to2t) = 1.0d0; % dx(idx_Pzb_o1to2t) % % nor4raralc_r_it5.praranor.o1to2f_eq (EQUATION) b(idx_Pzb_o1to2f_eq,idx_Pzb_o1to2f) = 1.0d0; % dx(idx_Pzb_o1to2f) % % nor4raralc_r_it5.praranor.o1fo2t_eq (EQUATION) b(idx_Pzb_o1fo2t_eq,idx_Pzb_o1fo2t) = 1.0d0; % dx(idx_Pzb_o1fo2t) % % nor4raralc_r_it5.praranor.o1fo2f_eq (EQUATION) b(idx_Pzb_o1fo2f_eq,idx_Pzb_o1fo2f) = 1.0d0; % dx(idx_Pzb_o1fo2f) % % nor4raralc_r_it4.tf.ru_eq (EQUATION) b(idx_Tvf_ru_eq,idx_Tvf_ru) = 1.0d0; % dx(idx_Tvf_ru) % % nor4raralc_r_it4.tf.ra_eq (EQUATION) b(idx_Tvf_ra_eq,idx_Tvf_ra) = 1.0d0; % dx(idx_Tvf_ra) % % nor4raralc_r_it4.tf.pola_eq (EQUATION) b(idx_Tvf_pola_eq,idx_Tvf_pola) = 1.0d0; % dx(idx_Tvf_pola) % % nor4raralc_r_it4.te.polt_eq (EQUATION) b(idx_T16_polt_eq,idx_T16_polt) = 1.0d0; % dx(idx_T16_polt) % % nor4raralc_r_it4.sips_off_2.sig_free_eq (EQUATION) b(idx_Swe_sig_free_eq,idx_Swe_sig_free) = 1.0d0; % dx(idx_Swe_sig_free) % % nor4raralc_r_it4.sips_off_1.sig_free_eq (EQUATION) b(idx_Ssm_sig_free_eq,idx_Ssm_sig_free) = 1.0d0; % dx(idx_Ssm_sig_free) % % nor4raralc_r_it4.rclnor.rb1nb2n_eq (EQUATION) b(idx_R6h_rb1nb2n_eq,idx_R6h_rb1nb2n) = 1.0d0; % dx(idx_R6h_rb1nb2n) % % nor4raralc_r_it4.rclnor.polb_eq (EQUATION) b(idx_R6h_polb_eq,idx_R6h_polb) = 1.0d0; % dx(idx_R6h_polb) % % nor4raralc_r_it4.rclnor.b1nb2n_eq (EQUATION) b(idx_R6h_b1nb2n_eq,idx_R6h_b1nb2n) = 1.0d0; % dx(idx_R6h_b1nb2n) % % nor4raralc_r_it4.rclnor.b1nb2f_eq (EQUATION) b(idx_R6h_b1nb2f_eq,idx_R6h_b1nb2f) = 1.0d0; % dx(idx_R6h_b1nb2f) % % nor4raralc_r_it4.rclnor.b1fb2n_eq (EQUATION) b(idx_R6h_b1fb2n_eq,idx_R6h_b1fb2n) = 1.0d0; % dx(idx_R6h_b1fb2n) % % nor4raralc_r_it4.rclnor.b1fb2f_eq (EQUATION) b(idx_R6h_b1fb2f_eq,idx_R6h_b1fb2f) = 1.0d0; % dx(idx_R6h_b1fb2f) % % nor4raralc_r_it4.praranor.polo1fo2f_eq (EQUATION) b(idx_P5e_polo1fo2f_eq,idx_P5e_polo1fo2f) = 1.0d0; % dx(idx_P5e_polo1fo2f) % % nor4raralc_r_it4.praranor.o1to2t_eq (EQUATION) b(idx_P5e_o1to2t_eq,idx_P5e_o1to2t) = 1.0d0; % dx(idx_P5e_o1to2t) % % nor4raralc_r_it4.praranor.o1to2f_eq (EQUATION) b(idx_P5e_o1to2f_eq,idx_P5e_o1to2f) = 1.0d0; % dx(idx_P5e_o1to2f) % % nor4raralc_r_it4.praranor.o1fo2t_eq (EQUATION) b(idx_P5e_o1fo2t_eq,idx_P5e_o1fo2t) = 1.0d0; % dx(idx_P5e_o1fo2t) % % nor4raralc_r_it4.praranor.o1fo2f_eq (EQUATION) b(idx_P5e_o1fo2f_eq,idx_P5e_o1fo2f) = 1.0d0; % dx(idx_P5e_o1fo2f) % % nor1r_f_sf0.te.polt_eq (EQUATION) b(idx_Tu1_polt_eq,idx_Tu1_polt) = 1.0d0; % dx(idx_Tu1_polt) % % nor1r_f_sf0.sips_off_1.sig_free_eq (EQUATION) b(idx_Sri_sig_free_eq,idx_Sri_sig_free) = 1.0d0; % dx(idx_Sri_sig_free) % % nor1r_f_sf0.r0.rb_eq (EQUATION) b(idx_R56_rb_eq,idx_R56_rb) = 1.0d0; % dx(idx_R56_rb) % % nor1r_f_sf0.r0.polb_eq (EQUATION) b(idx_R56_polb_eq,idx_R56_polb) = 1.0d0; % dx(idx_R56_polb) % % nor1r_f_sf0.r0.b_free_eq (EQUATION) b(idx_R56_b_free_eq,idx_R56_b_free) = 1.0d0; % dx(idx_R56_b_free) % % nor1r_f_sf0.pranor.polo1f_eq (EQUATION) b(idx_Pas_polo1f_eq,idx_Pas_polo1f) = 1.0d0; % dx(idx_Pas_polo1f) % % nor1r_f_sf0.pranor.o1t_eq (EQUATION) b(idx_Pas_o1t_eq,idx_Pas_o1t) = 1.0d0; % dx(idx_Pas_o1t) % % nor1r_f_sf0.pranor.o1f_eq (EQUATION) b(idx_Pas_o1f_eq,idx_Pas_o1f) = 1.0d0; % dx(idx_Pas_o1f) % % nor1r_f_sf0.fp.ru_eq (EQUATION) b(idx_F3m_ru_eq,idx_F3m_ru) = 1.0d0; % dx(idx_F3m_ru) % % nor1r_f_sf0.fp.ra_eq (EQUATION) b(idx_F3m_ra_eq,idx_F3m_ra) = 1.0d0; % dx(idx_F3m_ra) % % nor1r_f_sf0.fp.product_eq (EQUATION) b(idx_F3m_product_eq,idx_F3m_z) = 1.0d0; % dx(idx_F3m_z) % % nor1r_f_sf0.fp.pola_eq (EQUATION) b(idx_F3m_pola_eq,idx_F3m_pola) = 1.0d0; % dx(idx_F3m_pola) % % int_r_pool.fm_eq (EQUATION) b(idx_I9r_fm_eq,idx_I9r_fm) = 1.0d0; % dx(idx_I9r_fm) % % int_r_pool.fd_eq (EQUATION) b(idx_I9r_fd_eq,idx_I9r_fd) = 1.0d0; % dx(idx_I9r_fd) % % inp3_pool.fm_eq (EQUATION) b(idx_Ii6_fm_eq,idx_Ii6_fm) = 1.0d0; % dx(idx_Ii6_fm) % % inp3_pool.fd_eq (EQUATION) b(idx_Ii6_fd_eq,idx_Ii6_fd) = 1.0d0; % dx(idx_Ii6_fd) % % inp2_pool.fm_eq (EQUATION) b(idx_Ib2_fm_eq,idx_Ib2_fm) = 1.0d0; % dx(idx_Ib2_fm) % % inp2_pool.fd_eq (EQUATION) b(idx_Ib2_fd_eq,idx_Ib2_fd) = 1.0d0; % dx(idx_Ib2_fd) % % d_pool.sig_free_eq (EQUATION) b(idx_D5f_sig_free_eq,idx_D5f_sig_free) = 1.0d0; % dx(idx_D5f_sig_free) % % d_neg_pool.srna_free_eq (EQUATION) b(idx_Dck_srna_free_eq,idx_Dck_srna_free) = 1.0d0; % dx(idx_Dck_srna_free) % % c_pool.sig_free_eq (EQUATION) b(idx_C5e_sig_free_eq,idx_C5e_sig_free) = 1.0d0; % dx(idx_C5e_sig_free) % % c_neg_pool.srna_free_eq (EQUATION) b(idx_Ccj_srna_free_eq,idx_Ccj_srna_free) = 1.0d0; % dx(idx_Ccj_srna_free) % % b_pos_pool.fm_eq (EQUATION) b(idx_Bh0_fm_eq,idx_Bh0_fm) = 1.0d0; % dx(idx_Bh0_fm) % % b_pos_pool.fdi_eq (EQUATION) b(idx_Bh0_fdi_eq,idx_Bh0_fdi) = 1.0d0; % dx(idx_Bh0_fdi) % % b_pos_pool.fd_eq (EQUATION) b(idx_Bh0_fd_eq,idx_Bh0_fd) = 1.0d0; % dx(idx_Bh0_fd) % % b_pool.sig_free_eq (EQUATION) b(idx_B5d_sig_free_eq,idx_B5d_sig_free) = 1.0d0; % dx(idx_B5d_sig_free) % % b_neg_pool.fm_eq (EQUATION) b(idx_Bci_fm_eq,idx_Bci_fm) = 1.0d0; % dx(idx_Bci_fm) % % b_neg_pool.fd_eq (EQUATION) b(idx_Bci_fd_eq,idx_Bci_fd) = 1.0d0; % dx(idx_Bci_fd) % % a_pos_pool.fm_eq (EQUATION) b(idx_Agz_fm_eq,idx_Agz_fm) = 1.0d0; % dx(idx_Agz_fm) % % a_pos_pool.fdi_eq (EQUATION) b(idx_Agz_fdi_eq,idx_Agz_fdi) = 1.0d0; % dx(idx_Agz_fdi) % % a_pos_pool.fd_eq (EQUATION) b(idx_Agz_fd_eq,idx_Agz_fd) = 1.0d0; % dx(idx_Agz_fd) % % a_pool.sig_free_eq (EQUATION) b(idx_A5c_sig_free_eq,idx_A5c_sig_free) = 1.0d0; % dx(idx_A5c_sig_free) % % a_neg_pool.fm_eq (EQUATION) b(idx_Ach_fm_eq,idx_Ach_fm) = 1.0d0; % dx(idx_Ach_fm) % % a_neg_pool.fd_eq (EQUATION) b(idx_Ach_fd_eq,idx_Ach_fd) = 1.0d0; % dx(idx_Ach_fd) % varargout{1}=b; % End of mass-matrix entries case 'init' %% Initial values for states varargout {2}=[0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0; 0; 0; 0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 2.1d-6; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 1.0d-9; 0.0d0; 1.0d-9; 1.0d-9; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 4.2d-6; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0; 0.0d0]; %% Output definition according to :report varargout {3}=odeset('Mass','M','MassSingular','maybe'); otherwise error(['Unknown flag ' flag]); end;