The authors have declared that no competing interests exist.
¶ Membership in the GOBLET Consortium is listed in the Acknowledgments.
In recent years, high-throughput technologies have brought big data to the life sciences. The march of progress has been rapid, leaving in its wake a demand for courses in data analysis, data stewardship, computing fundamentals, etc., a need that universities have not yet been able to satisfy—paradoxically, many are actually closing “niche” bioinformatics courses at a time of critical need. The impact of this is being felt across continents, as many students and early-stage researchers are being left without appropriate skills to manage, analyse, and interpret their data with confidence. This situation has galvanised a group of scientists to address the problems on an international scale. For the first time, bioinformatics educators and trainers across the globe have come together to address common needs, rising above institutional and international boundaries to cooperate in sharing bioinformatics training expertise, experience, and resources, aiming to put ad hoc training practices on a more professional footing for the benefit of all.
Bioinformatics has become essential to the life sciences, especially important for supporting “omic” technologies. Now commonplace, these comprehensive studies bring new challenges (e.g., [
Universities and research institutions are aware of this demand, but provision of bioinformatics training for life scientists is still patchy. Consequently, many students are not being equipped to get the most from currently available technologies. The problem stems partly from how much bioinformatics has changed, and partly from how it is taught. The latter can be especially difficult [
Bioinformatics training needs are global, but training provision has been ad hoc, and repeatedly duplicated in a host of organisations across the world. Of course, having access to multiple training opportunities across the world is a good thing; however, no systematic endeavour had been made to coordinate these efforts. As a result, opportunities to share materials, courses, and even trainers, have been lost, and potential trainees have had no single place to find training information relevant to their needs. Each institution or country may have unique challenges, but there are many overlaps. It seemed likely, therefore, that global benefits could accrue for trainers, organisers, and trainees, were concerted efforts made to pool efforts and resources. With this harmonising vision and practical goals in mind, a group of like-minded scientists joined forces to create the Global Organisation for Bioinformatics Learning, Education and Training, (GOBLET,
In 2009, the Bioinformatics Training Network (BTN) emerged as an outcome of SLING (Serving Life-science Information for the Next Generation), a European Seventh Framework Integrating Activity project. The BTN met regularly, discussing issues like the challenges and support requirements for bioinformatics training [
However, the bioinformatics training landscape clearly doesn’t stop at European borders. Virtually every bioinformatics and computational biology society, network, and institute includes some sort of education and training committee, each with a similar mission, and each with a similar problem: how to deliver tangible benefits with limited funds and a handful of volunteers? In 2012, representatives of ten such organisations met under the aegis of the 24th Annual General Meeting (AGM) of EMBnet (the Global Bioinformatics Network) to discuss this issue [
The conclusion of the meeting was to create a single, dedicated foundation to allow the work of the BTN to continue beyond Europe. This was a vital decision, as funding for the BTN was coming to a close [
Sharing knowledge and developing the bioinformatics skills of learners lie at the heart of GOBLET. This is reflected in the foundation’s ethos (which embraces inclusivity, sharing, and openness) and drives its mission to provide an open, sustainable support structure to foster the global community of bioinformatics trainers and trainees. The foundation has already amassed an international array of educators who are now sharing their expertise, best practices, and resources (adhering to Creative Commons Licences) across continents. They are also building synergistic relationships with users and beneficiaries, both via surveys and workshops, and through active dialogue with students and student bodies, for whom education and training are top priorities.
Providing bioinformatics education and training on a global scale is a challenge that will require time, focused effort, and innovative ideas. Members of GOBLET are embracing this challenge in a collective effort to make bioinformatics knowledge and skills available for all. Many training ventures will, of course, require local solutions that use local resources, and part of the challenge will be to help design training materials and programmes for countries with varying levels of infrastructure support. Nevertheless, with its global perspective and the combined experience and expertise of its members, GOBLET is ideally and uniquely placed to discuss, devise, and implement appropriate solutions.
A variety of stakeholders stand to benefit from the cooperative, collaborative framework that GOBLET provides, albeit in different ways:
As an organisation of organisations, GOBLET largely comprises organisational members (societies, networks, institutes, etc.). For them, benefits include opportunities to network with trainers from other organisations; to identify other trainers with whom to work; to publicise training events; and to acquire coordinated views of the training landscape. By exploiting GOBLET, organisations may share existing materials, curricula, etc., and avoid duplicating the same resources in-house. As part of a consortium with a critical mass of respected national and international members, organisations may also cooperate in developing coordinated funding proposals and work together to help shape future support policies for bioinformatics training.
The same is true for smaller research groups and consortia; for them, however, particular advantages are the gearing that may be achieved from interaction with a much larger, established community of trainers and the wider opportunities this may afford to participate in global training events and to discover potential future collaborators.
In addition to these benefits, what may be particularly beneficial to companies is the ability to use GOBLET as a platform to express the specific training needs of industry, and to increase the visibility of the industrial sector, either as training consumers or as training providers; for them, GOBLET may also provide an opportunity for establishing training collaborations.
Increasingly, delivery of bioinformatics training is being embedded in grant awards in the life sciences. For funding bodies, then, the foundation offers a partner organisation with which to discuss, coordinate and identify relevant training needs and resources, and to help formulate policies on how best to support bioinformatics training in the future. In turn, GOBLET offers a global platform for advertising training activities that such bodies support.
GOBLET grew from a vision of organisers and trainers to harmonise bioinformatics training globally. Trainers may now profit from existing experience on course design, from recommendations of trainers, IT infrastructures, etc.; they may exchange training materials and methods, and gain inspiration from those of others; they may learn about pedagogical advances, and discuss the pros and cons of different training approaches. Similarly, organisers may promote their courses, share and disseminate their resources via a single portal, devise new courses to plug training gaps, discuss the challenges they face, and involve trainers in mitigating some of the issues.
The main value for trainees is access to an organised, professional network of trainers and their know-how. Those wanting to take specific courses benefit from being able to consult a single portal with the latest news on local and globally distributed training events, where they may download relevant tutorials, case studies, data-sets, etc. By becoming involved, trainees may use GOBLET to express their training requirements, to influence future development of bioinformatics training materials, and to lobby for core bioinformatics topics that they believe should make it onto course curricula and degree programmes.
The foundation’s priorities fall into several broad themes: these encompass
Longer-term aims include plugging gaps where there is known to be a dearth of training materials (e.g., in standards development and use of standards in biocuration [
These priority areas suggested a natural framework for organising GOBLET’s work, and five committees were duly established as part of a formal governance structure (
The operational board comprises the executive board and committee chairs. The general constituency includes representatives of member organisations, and individuals.
To try to sustain the foundation’s work, the Fund-raising Committee is tasked with stimulating collaborative projects within GOBLET and with other training communities. Alongside this work, the Outreach and PR (public relations) Committee is responsible for promoting GOBLET, maintaining its social networking interactions (twitter @mygobletorg) and galvanising communities to participate in its initiatives.
Overall, the foundation’s work is orchestrated by an executive board, which liaises with the committee chairs to form an operational board that ensures that the foundation’s activities are in harmony with the foundation’s core mission, aligned with the needs of trainees worldwide and, importantly, in line with its own statutes and bylaws. These Boards report formally to the full constituency at AGMs. Committee chairs and members of the first formal executive board were elected in autumn 2013, and took up their roles at the first AGM in November 2013 [
Supported by this governance structure, GOBLET’s work is driven by its members. The membership categories, mentioned earlier (
A wave of enthusiasm arose with the creation of GOBLET, a testament to the keenly felt need to galvanise national and international bioinformatics training communities. Since its inception, there have been several notable achievements:
To engage with likely beneficiaries, we began by working with the Society for Experimental Biology (SEB) to solicit the type and level of bioinformatics training that biologists need to facilitate their work. The results were of sufficient interest to push the survey out more widely through GOBLET partner organisations, to see whether the initial findings were general across global communities. The outcomes were presented at a satellite workshop at the SEB 2014 Annual Meeting, where reactions to the results were gathered, additional issues identified, and ideas for prioritising and addressing the training needs and gaps were discussed [
We also worked with the ISCB to create an education poster track for the Intelligent Systems for Molecular Biology (ISMB) international conferences (GOBLET had submissions accepted in 2013 and 2014). A particular highlight at ISMB 2014 was the launch of a Community of Special Interest (COSI) around Computational Biology Education (CoBE), aiming to provide a supportive environment where ISCB and GOBLET communities can work together and reach out to those with similar interests (cosi.iscb.org/wiki/CoBE:Home). Led by the ISCB Education committee, another collaborative activity here was a teacher-training workshop to help bring bioinformatics activities into high school classrooms, an activity that has been growing and where there is increasing interest among teachers [
Many other community-building events and workshops have been held (
Date | Host/Location | Description |
---|---|---|
June 2012 | EMBnet AGM, Uppsala, SE | Inaugural meeting to discuss the formation of a bioinformatics training foundation |
November 2012 | NBIC, Amsterdam, NL | GOBLET 2012, 1st formal meeting |
March 2013 | The Genome Analysis Centre (TGAC), Norwich, UK | ELIXIR-UK/GOBLET Workshop |
July 2013 | ISCB, Berlin, DE | Workshop on bioinformatics education |
November 2013 | TGAC, Norwich, UK | Pan-European bioinformatics training strategy workshop |
November 2013 | TGAC, Norwich, UK | GOBLET 2013 AGM |
July 2014 | SEB Annual Meeting, Manchester, UK | Bioinformatics workshop—an essential tool for experimental biologists |
July 2014 | ISMB 2014, Boston, US | High-school teacher workshop |
November 2014 | Bioinformatics.ca, Toronto, CA | GOBLET 2014 AGM |
Early on, we launched a training portal, which we are beginning to shape into a significant community asset, providing a non-redundant, centralised repository of bioinformatics training information, courses, materials, etc., accessible to all [
For international groups, face-to-face meetings are expensive. We were thus fortunate to have Bioinformatics.ca win a grant from the Canadian Institutes for Health Research to help support GOBLET’s 2014 AGM in Toronto. In the very positive feedback received, one reviewer commented, “This proposal seeks… to develop an Action Plan to coordinate global bioinformatics training. This is an important undertaking…and a critical step forward.” Another success was a small Australian Bioinformatics Network Connection Grant to fund a GOBLET speaker to headline an education session at the 13th International Conference on Bioinformatics (InCoB 2014) in Sydney. Such efforts bear witness to the importance attached to the international dimension that GOBLET provides.
GOBLET offers an opportunity to become part of an active, worldwide community of bioinformatics educators and trainers. Since the 10 founding partners met in 2012, membership has increased 4-fold, including 28 national and international organisations. Further success depends on global participation, so we warmly encourage all relevant institutions and motivated individuals across continents to join the foundation and its activities—the wider the membership, the broader our perspective will be on global challenges in bioinformatics education and training, and the greater our ability to address them. But perhaps amongst the greatest rewards and incentives are the inspiration that comes from working towards common goals, the
GOBLET was created as an umbrella organisation, to harmonise worldwide bioinformatics training activities, and to allow its members to work together more powerfully towards a sustainable future. To this end, the foundation exploits a mixed funding model (including grants, donations, and member subscriptions), in order to withstand funding deserts or sudden changes in institutional funding policies. To try to be inclusive, the membership structure offers various tiers, each with specific benefits (details at
To date, GOBLET has been able to subsidise meetings, to fund outreach and PR activities (including speakers and posters at meetings and conferences), and to maintain the training portal. As it matures, the foundation aims to support an increasing portfolio of activities: e.g., publication of articles, guidelines and opinion pieces; production and maintenance of high-quality, comprehensive training materials and data-sets; an annual conference; further outreach to schools; and perhaps also a discussion forum, especially to engage with and benefit students/early-stage researchers. We welcome wider input to these exciting initiatives, to collectively nurture the GOBLET foundation, and ultimately help it to evolve into the professional body for bioinformatics educators and trainers it aspires to be.
We would like to thank Barbara van Kampen for providing administrative support. We are also grateful to the presidents and directors of GOBLET’s member organisations for their strong support, including all those who signed the Memorandum of Understanding prior to the formal creation of GOBLET (
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