Improving pairwise comparison of protein sequences with domain co-occurrence
Table 1
Summary of the number of new domain occurrences identified by the approach.
In the “Without Pfam integration” experiment, analyses were done on the entire genome, without masking the already known Pfam domain occurrences in the BLAST search nor using them as potential co-occuring hits in the co-occurrence analysis. On the contrary, in the “With Pfam integration” experiment the already known Pfam domain occurrences were masked in the BLAST search and used as potential co-occuring hits in the co-occurrence analysis.