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Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing

Fig 3

Performance of ILP solver compared to DOCKS.

For each combination of 5 ≤ k ≤ 10 and 20 ≤ L ≤ 200 we ran the ILP solver for up to 24 hours starting from a DOCKS feasible solution. The histograms show the percent improvement of the k-mer set size generated by the ILP solver compared to DOCKS. For L > 60 and all tested values of k, the improvement was <1%.

Fig 3

doi: https://doi.org/10.1371/journal.pcbi.1005777.g003