SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
Fig 2
Identification of Major Lung Cell Types.
Cells (n = 148) from two sample preparations from fetal mouse lung at E16.5 were assigned into 9 clusters via hierarchical clustering using average linkage and centered Pearson’s correlation. Each color represents a distinct cell cluster, labeled as C1-C9. The rectangles represent single lung cells from the first preparation and the ellipses consist of single cells from a second independent preparation. Connection lines indicate the z-score correlation between the two cells > = 0.05. The blue lines connect cells within the same preparation, while the red lines connect cells across preparations.