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Enhanced Methods for Local Ancestry Assignment in Sequenced Admixed Individuals

Figure 9

The average number of sCSVs from each 1000 Genomes population observed per megabase on the African-African called local ancestry regions of the real ASW individuals on chromosome 10.

The large number of YRI sCSVs seen in these regions supports the hypothesis that the African admixture component in African Americans comes from western Africa. We plot the expected number of observed sCSVs per megabase on a YRI haplotype (red diamonds) and the expected number of observed sCSVs on an LWK haplotype (green squares). The observed counts more closely resemble the count profile expected from the YRI haplotypes.

Figure 9

doi: https://doi.org/10.1371/journal.pcbi.1003555.g009