Temporal Expression-based Analysis of Metabolism
Figure 6
A comparison of internal flux profiles for two different penalty thresholds.
Superposition of metabolic flux onto central carbon metabolism of S. oneidensis. Top panel corresponds to a Type 2 penalty threshold of 65%, and bottom panel to a Type 2 penalty threshold of 85%. Large nodes and edges on the networks represent reactions and small nodes correspond to metabolites. The colors of the large nodes correspond to the penalty associated with that reaction. Colored squares on the network plots identify the transport reactions for each exchange metabolite. A network key and reaction and metabolite details can be found in Figure S3, Table S1 and Table S2 respectively. Detailed time-course flux predictions are provided in Supplementary Dataset S1.