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Microbial Co-occurrence Relationships in the Human Microbiome

Figure 4

Co-occurrence of microbial clades within and among body areas.

Nodes represent microbial classes colored by phylum, with edges summarizing aspects of their interactions over all body sites. Classes are linked when the number of edges between them is significantly larger than expected (randomization p<0.05, see Methods). Edge type (solid or dashed) indicates the body area contributing the most edges to the total interactions between two classes, with the label specifying the percentage contributed by this dominant body area. For instance, 80% of the edges between Bacilli and Actinobacteria come from skin sites. Green indicates co-occurrence, red exclusion. Most inter-class interactions occur in the mouth, with the Actinobacteria and Bacilli forming negative hubs.

Figure 4

doi: https://doi.org/10.1371/journal.pcbi.1002606.g004