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Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection

Figure 4

Summary statistics from HIV gene genealogies versus the fraction of transmissions attributable to early/acute infection.

The threshold TMRCA was five years before the most recent sample. Sample size and distribution of samples over time was matched to the Detroit MSM phylogeny.

Figure 4

doi: https://doi.org/10.1371/journal.pcbi.1002552.g004