Deciphering the Code for Retroviral Integration Target Site Selection
Figure 5
Association (F score) between HIV-1 proviruses and two markers as a function of window size in kB.
The first marker is H3K4me3 sites in HeLa (green solid line). The second is a virtual marker placed in the promoter region of transcribed genes in HeLa cells (blue dashed line), assuming a uniform distribution of integration sites in transcribed regions. The median length of transcribed genes in HeLa is ∼20kB.