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CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

Figure 3

Neighbor-joining [57] trees built from matrices of pairwise substitution spectrum distances (Eq. 2) computed between different models fitted to the HIV-1 group M pol alignment, and between models inferred from different alignments.

Figure 3

doi: https://doi.org/10.1371/journal.pcbi.1000885.g003