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Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model

Figure 8

Quantile-quantile (QQ) plots for 230 loop predictions by Rosetta using different Ramchandran distributions.

Each figure plots the numerically sorted Cα RMSDs for predictions from one form of Ramachandran distributions against the numerically sorted Cα RMSDs from another. A: neighbor-independent TCB distributions vs. original distributions in Rosetta; B: neighbor-dependent TCB distributions vs Rosetta original distributions; C: neighbor-dependent TCB distributions vs neighbor-independent TCB distributions; D: neighbor-dependent TCB distributions vs neighbor-dependent TCBIG distributions.

Figure 8

doi: https://doi.org/10.1371/journal.pcbi.1000763.g008