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An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1

Figure 7

An instance when a sequence unclassified by REGA is inferred to be a novel recombinant form by SCUEAL; the A–J mosaic structure is also confirmed by trees and bootscan plots based on the REGA reference alignment.

Figure 7

doi: https://doi.org/10.1371/journal.pcbi.1000581.g007