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Fast Statistical Alignment

Figure 5

The Java GUI allows users to visualize the estimated alignment accuracy under FSA's statistical model.

FSA's alignment is colored according the expected accuracy under FSA's statistical model (top) as well as according to the “true” accuracy (bottom) given from a comparison between FSA's alignment and the reference structural alignment. It is clear from inspection that accuracies estimated under FSA's statistical model correspond closely to the true accuracies. Sequences are from alignment BBS12030 in the RV12 dataset of BAliBASE 3 [24].

Figure 5