Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution
Figure 6
Conservation of predicted binding sites in regions bound by TFs in the Drosophila blastoderm.
(A) Expressed/Unexpressed: sequences that are associated with genes that are expressed/unexpressed in stage 4–6 according to BDGP; Unbound: randomly chosen intronic sequences. (B) Proximal: sequences that are less than 2 kb from the TSS of the associated genes; Distal: sequences that are more than 10 kb from the TSS of the associated genes.