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Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

Figure 2

Results of phylogenetic tree test.

The mean fraction of correct split of ML trees for gene trees from three different kingdoms are shown. The higher the values, the better the gene trees agree with the species tree. On the left, the pairwise results between every project and OMA are shown, whereas on the right, the result for the comparison on the common set of proteins of a larger number of projects is shown. Note that the pairwise project comparisons are made based on varying protein sets, and thus can not be compared to each other. Error bars indicate the 95% confidence intervals of the estimated means. Projects with too little appropriate data could not be evaluated, which explains absent bars.

Figure 2

doi: https://doi.org/10.1371/journal.pcbi.1000262.g002