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Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag

Figure 10

Performance on data generated from the mixed-clade B/C dataset.

Precision-recall (A) and calibration curves (B) of the models with respect to HLA-codon associations; precision-recall (C) and calibration curves (D) of the models with respect to both HLA-codon and codon-codon associations. “PLC Strat” and “LC Strat” refer to running and , respectively, on data stratified by clade. The curves reflect the combined results from the two strata.

Figure 10

doi: https://doi.org/10.1371/journal.pcbi.1000225.g010