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Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag

Figure 8

Performance on data generated from the 97% clade B HOMER cohort.

Precision-recall (A) and calibration curves (B) of the models with respect to HLA-codon associations; precision-recall (C) and calibration curves (D) of the models with respect to both HLA-codon and codon-codon associations. Better precision-recall curves are ones that tend toward the upper right of the plot. Curves with perfect calibration follow the diagonal.

Figure 8

doi: https://doi.org/10.1371/journal.pcbi.1000225.g008