CM000455 pviv_synteny_improved gene 1747571 1757920 . + . ID=PFL1085w_ortholog;query=PFL1085w;improved=1;replaced_genes=PVX_123760;Name=PVX_123760;description=hypothetical+protein;gene_type=protein CM000455 pviv_synteny_improved mRNA 1747571 1757920 . + . ID=rna_PFL1085w_ortholog-1;ontology_term=GO:0005634,GO:0003700;description=hypothetical+protein;Dbxref=ApiDB_PlasmoDB:PFL1085w_ortholog,NCBI_gi:148806188,NCBI_gi:156103243,taxon:126793;size=1494;Parent=PFL1085w_ortholog CM000455 pviv_synteny_improved CDS 1747571 1757920 . + 0 ID=cds_PFL1085w_ortholog-1;description=.;size=1494;Parent=rna_PFL1085w_ortholog-1 CM000452 pviv_synteny_improved gene 1706837 1715341 . - . ID=PVX_113550;clustalpid=22.74;queryCoverage=99.93;AlignmentGaps=51;pseudogene=0;gene_type=protein;bitscore=271.48;truncated=1;alignmentLen=2801;query=PFF0380w;queryLen=2752;improved=1;replaced_genes=PVX_113550;Name=PVX_113550 CM000452 pviv_synteny_improved mRNA 1706837 1715341 . - . ID=rna_PVX_113550;truncated=1;pseudogene=0;Name=rna_PVX_113550;Parent=PVX_113550 CM000452 pviv_synteny_improved CDS 1713850 1715341 . - 0 ID=cds_PVX_113550-1;truncated=1;pseudogene=0;Name=cds_PVX_113550-1;Parent=rna_PVX_113550 CM000452 pviv_synteny_improved CDS 1711101 1713639 . - 1 ID=cds_PVX_113550-2;truncated=1;pseudogene=0;Name=cds_PVX_113550-2;Parent=rna_PVX_113550 CM000452 pviv_synteny_improved CDS 1710847 1710935 . - 2 ID=cds_PVX_113550-3;truncated=1;pseudogene=0;Name=cds_PVX_113550-3;Parent=rna_PVX_113550 CM000452 pviv_synteny_improved CDS 1708291 1710699 . - 1 ID=cds_PVX_113550-4;truncated=1;pseudogene=0;Name=cds_PVX_113550-4;Parent=rna_PVX_113550 CM000452 pviv_synteny_improved CDS 1706837 1707945 . - 1 ID=cds_PVX_113550-5;truncated=1;pseudogene=0;Name=cds_PVX_113550-5;Parent=rna_PVX_113550 CM000452 pviv_synteny_improved gene 1694022 1697534 . - . ID=PVX_300054;clustalpid=30.56;pseudogene=0;queryCoverage=100.00;AlignmentGaps=30;gene_type=protein;bitscore=499.98;truncated=1;alignmentLen=1352;query=PFF0400w;queryLen=1322;improved=1;Name=PVX_300054 CM000452 pviv_synteny_improved mRNA 1694022 1697534 . - . ID=rna_PVX_300054;truncated=1;pseudogene=0;Name=rna_PVX_300054;Parent=PVX_300054 CM000452 pviv_synteny_improved CDS 1694591 1697534 . - 0 ID=cds_PVX_300054-1;truncated=1;pseudogene=0;Name=cds_PVX_300054-1;Parent=rna_PVX_300054 CM000452 pviv_synteny_improved CDS 1694022 1694506 . - 1 ID=cds_PVX_300054-2;truncated=1;pseudogene=0;Name=cds_PVX_300054-2;Parent=rna_PVX_300054 CM000442 pviv_synteny_improved gene 357337 361136 . - . ID=PVX_300055;clustalpid=46.94;pseudogene=0;queryCoverage=99.74;AlignmentGaps=35;gene_type=protein;bitscore=1135.86;truncated=1;alignmentLen=1188;query=MAL7P1.28;queryLen=1156;improved=1;Name=PVX_300055 CM000442 pviv_synteny_improved mRNA 357337 361136 . - . ID=rna_PVX_300055;truncated=1;pseudogene=0;Name=rna_PVX_300055;Parent=PVX_300055 CM000442 pviv_synteny_improved CDS 358322 361136 . - 0 ID=cds_PVX_300055-1;truncated=1;pseudogene=0;Name=cds_PVX_300055-1;Parent=rna_PVX_300055 CM000442 pviv_synteny_improved CDS 357755 358129 . - 1 ID=cds_PVX_300055-2;truncated=1;pseudogene=0;Name=cds_PVX_300055-2;Parent=rna_PVX_300055 CM000442 pviv_synteny_improved CDS 357505 357597 . - 1 ID=cds_PVX_300055-3;truncated=1;pseudogene=0;Name=cds_PVX_300055-3;Parent=rna_PVX_300055 CM000442 pviv_synteny_improved CDS 357337 357377 . - 1 ID=cds_PVX_300055-4;truncated=1;pseudogene=0;Name=cds_PVX_300055-4;Parent=rna_PVX_300055 CM000453 pviv_synteny_improved gene 1745628 1764442 . + . ID=PF14_0600a_ortholog;clustalpid=0.97;query=PF14_0600a;description=hypothetical+protein;gene_type=protein;improved=1;replaced_genes=PVX_117305,PVX_117310;Name=PVX_117305 CM000453 pviv_synteny_improved mRNA 1745628 1764442 . + . ID=rna_PF14_0600a_ortholog-1;Name=PF14_0600a_ortholog-1;Parent=PF14_0600a_ortholog CM000453 pviv_synteny_improved CDS 1763775 1764164 . + 0 ID=cds_PF14_0600a_ortholog-10;Name=cds_PF14_0600a_ortholog-10;description=.;size=390;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1746550 1746614 . + 0 ID=cds_PF14_0600a_ortholog-4;Name=cds_PF14_0600a_ortholog-4;description=.;size=65;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1746029 1746114 . + 0 ID=cds_PF14_0600a_ortholog-2;Name=cds_PF14_0600a_ortholog-2;description=.;size=86;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1745628 1745915 . + 0 ID=cds_PF14_0600a_ortholog-1;Name=cds_PF14_0600a_ortholog-1;description=.;size=288;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1746762 1746821 . + 1 ID=cds_PF14_0600a_ortholog-5;Name=cds_PF14_0600a_ortholog-5;description=.;size=60;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1759218 1763538 . + 0 ID=cds_PF14_0600a_ortholog-9;Name=cds_PF14_0600a_ortholog-9;description=.;size=4305;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1746261 1746393 . + 1 ID=cds_PF14_0600a_ortholog-3;Name=cds_PF14_0600a_ortholog-3;description=.;size=133;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1747422 1747514 . + 1 ID=cds_PF14_0600a_ortholog-7;Name=cds_PF14_0600a_ortholog-7;description=.;size=93;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1747661 1759036 . + 1 ID=cds_PF14_0600a_ortholog-8;Name=cds_PF14_0600a_ortholog-8;description=.;size=11389;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1764365 1764442 . + 0 ID=cds_PF14_0600a_ortholog-11;Name=cds_PF14_0600a_ortholog-11;description=.;size=78;Parent=rna_PF14_0600a_ortholog-1 CM000453 pviv_synteny_improved CDS 1747007 1747090 . + 1 ID=cds_PF14_0600a_ortholog-6;Name=cds_PF14_0600a_ortholog-6;description=.;size=84;Parent=rna_PF14_0600a_ortholog-1 CM000450 pviv_synteny_improved gene 60977 61162 . + . ID=PF11_0050_ortholog;clustalpid=50.82;query=PF11_0050;description=hypothetical+protein,+conserved;gene_type=protein;improved=1;replaced_genes=PVX_090875;Name=PVX_090875b CM000450 pviv_synteny_improved mRNA 60977 61162 . + . ID=rna_PF11_0050_ortholog-1;Name=PF11_0050_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PVX_090875,taxon:126793;Parent=PF11_0050_ortholog CM000450 pviv_synteny_improved CDS 60977 61162 . + 0 ID=cds_PF11_0050_ortholog-2;Name=cds_PF11_0050_ortholog-2;Parent=rna_PF11_0050_ortholog-1 CM000450 pviv_synteny_improved gene 49497 59804 . + . ID=PF11_0049_ortholog;clustalpid=39.40;query=PF11_0049;description=hypothetical+protein,+conserved;gene_type=protein;improved=1;replaced_genes=PVX_090875;Name=PVX_090875a CM000450 pviv_synteny_improved mRNA 49497 59804 . + . ID=rna_PF11_0049_ortholog-1;Name=PF11_0049_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PVX_090875,taxon:126793;Parent=PF11_0049_ortholog CM000450 pviv_synteny_improved CDS 49497 59804 . + 0 ID=cds_PF11_0049_ortholog-1;Name=cds_PF11_0049_ortholog-1;Parent=rna_PF11_0049_ortholog-1 CM000450 pviv_synteny_improved gene 1860604 1861474 . - . ID=PVX_300057;clustalpid=58.82;pseudogene=0;queryCoverage=98.04;AlignmentGaps=0;gene_type=protein;bitscore=84.15;truncated=1;alignmentLen=100;query=PF11_0480a;queryLen=102;improved=1;Name=PVX_300057 CM000450 pviv_synteny_improved mRNA 1860604 1861474 . - . ID=rna_PVX_300057;truncated=1;pseudogene=0;Name=rna_PVX_300057;Parent=PVX_300057 CM000450 pviv_synteny_improved CDS 1861345 1861474 . - 0 ID=cds_PVX_300057-1;truncated=1;pseudogene=0;Name=cds_PVX_300057-1;Parent=rna_PVX_300057 CM000450 pviv_synteny_improved CDS 1861158 1861227 . - 1 ID=cds_PVX_300057-2;truncated=1;pseudogene=0;Name=cds_PVX_300057-2;Parent=rna_PVX_300057 CM000450 pviv_synteny_improved CDS 1860914 1860977 . - 2 ID=cds_PVX_300057-3;truncated=1;pseudogene=0;Name=cds_PVX_300057-3;Parent=rna_PVX_300057 CM000450 pviv_synteny_improved CDS 1860604 1860645 . - 0 ID=cds_PVX_300057-4;truncated=1;pseudogene=0;Name=cds_PVX_300057-4;Parent=rna_PVX_300057 CM000450 pviv_synteny_improved gene 421023 421568 . + . ID=PVX_300058;clustalpid=35.61;pseudogene=0;queryCoverage=100.00;AlignmentGaps=4;gene_type=protein;bitscore=37.56;truncated=1;alignmentLen=133;query=PF11_0140;queryLen=129;improved=1;Name=PVX_300058 CM000450 pviv_synteny_improved mRNA 421023 421568 . + . ID=rna_PVX_300058;truncated=1;pseudogene=0;Name=rna_PVX_300058;Parent=PVX_300058 CM000450 pviv_synteny_improved CDS 421023 421316 . + 0 ID=cds_PVX_300058-1;truncated=1;pseudogene=0;Name=cds_PVX_300058-1;Parent=rna_PVX_300058 CM000450 pviv_synteny_improved CDS 421479 421568 . + 0 ID=cds_PVX_300058-2;truncated=1;pseudogene=0;Name=cds_PVX_300058-2;Parent=rna_PVX_300058 CM000444 pviv_synteny_improved gene 652987 655194 . + . ID=PVX_300059;clustalpid=16.92;pseudogene=0;queryCoverage=100.00;AlignmentGaps=21;gene_type=protein;bitscore=-52.68;truncated=1;alignmentLen=800;query=MAL7P1.115;queryLen=779;improved=1;Name=PVX_300059 CM000444 pviv_synteny_improved mRNA 652987 655194 . + . ID=rna_PVX_300059;truncated=1;pseudogene=0;Name=rna_PVX_300059;Parent=PVX_300059 CM000444 pviv_synteny_improved CDS 652987 655194 . + 0 ID=cds_PVX_300059-1;truncated=1;pseudogene=0;Name=cds_PVX_300059-1;Parent=rna_PVX_300059 CM000455 pviv_synteny_improved gene 1390709 1391185 . - . ID=PVX_300060;clustalpid=36.61;pseudogene=0;queryCoverage=99.10;AlignmentGaps=1;gene_type=protein;bitscore=60.51;truncated=1;alignmentLen=111;query=PFL0645c;queryLen=111;improved=1;Name=PVX_300060 CM000455 pviv_synteny_improved mRNA 1390709 1391185 . - . ID=rna_PVX_300060;truncated=1;pseudogene=0;Name=rna_PVX_300060;Parent=PVX_300060 CM000455 pviv_synteny_improved CDS 1391028 1391185 . - 0 ID=cds_PVX_300060-1;truncated=1;pseudogene=0;Name=cds_PVX_300060-1;Parent=rna_PVX_300060 CM000455 pviv_synteny_improved CDS 1390709 1390883 . - 2 ID=cds_PVX_300060-2;truncated=1;pseudogene=0;Name=cds_PVX_300060-2;Parent=rna_PVX_300060 CM000448 pviv_synteny_improved gene 1034847 1038134 . - . ID=PVX_099775;clustalpid=19.35;query=PFI1315c;improved=1;replaced_genes=PVX_099775%2CPVX_099770;gene_type=protein;Name=PVX_099775 CM000448 pviv_synteny_improved mRNA 1034847 1038134 . - . ID=mrna_PVX_099775;Name=mrna_PVX_099775;Parent=PVX_099775 CM000448 pviv_synteny_improved CDS 1036402 1038134 . - . ID=cds_gw_PVX_099775-3;Name=cds_gw_PVX_099775-3;Parent=mrna_PVX_099775 CM000448 pviv_synteny_improved CDS 1034847 1036332 . - . ID=cds_gw_PVX_099775-4;Name=cds_gw_PVX_099775-4;Parent=mrna_PVX_099775 CM000451 pviv_synteny_improved gene 963023 963662 . + . ID=PVX_300061;clustalpid=55.91;pseudogene=0;queryCoverage=100.00;AlignmentGaps=12;gene_type=protein;bitscore=125.74;truncated=1;alignmentLen=127;query=PFE0460c;queryLen=115;improved=1;Name=PVX_300061 CM000451 pviv_synteny_improved mRNA 963023 963662 . + . ID=rna_PVX_300061;truncated=1;pseudogene=0;Name=rna_PVX_300061;Parent=PVX_300061 CM000451 pviv_synteny_improved CDS 963023 963118 . + 0 ID=cds_PVX_300061-1;truncated=1;pseudogene=0;Name=cds_PVX_300061-1;Parent=rna_PVX_300061 CM000451 pviv_synteny_improved CDS 963378 963662 . + 0 ID=cds_PVX_300061-2;truncated=1;pseudogene=0;Name=cds_PVX_300061-2;Parent=rna_PVX_300061 CM000446 pviv_synteny_improved gene 654785 657586 . + . ID=PF08_0060_ortholog;query=PF08_0060;improved=1;replaced_genes=PVX_089545;Name=PVX_089545;description=hypothetical+protein;gene_type=protein CM000446 pviv_synteny_improved mRNA 654785 657586 . + . ID=rna_PF08_0060_ortholog-1;Name=PF08_0060_ortholog-1;description=hypothetical+protein;Dbxref=ApiDB_PlasmoDB:PF08_0060_ortholog,NCBI_gi:148803872,NCBI_gi:156097931,taxon:126793;size=777;Parent=PF08_0060_ortholog CM000446 pviv_synteny_improved CDS 654785 657586 . + 0 ID=cds_PF08_0060_ortholog-1;Name=cds_PF08_0060_ortholog-1;description=.;size=777;Parent=rna_PF08_0060_ortholog-1 CM000446 pviv_synteny_improved gene 215292 218894 . - . ID=PF08_0017_ortholog;clustalpid=14.49;query=PF08_0017;description=hypothetical+protein;gene_type=protein;improved=1;replaced_genes=PVX_089005,PVX_089000;Name=PVX_089005 CM000446 pviv_synteny_improved mRNA 215292 218894 . - . ID=rna_PF08_0017_ortholog-1;Name=PF08_0017_ortholog-1;description=hypothetical+protein;size=1228;Parent=PF08_0017_ortholog CM000446 pviv_synteny_improved CDS 215292 218894 . - 0 ID=cds_PF08_0017_ortholog-1;Name=cds_PF08_0017_ortholog-1;Parent=rna_PF08_0017_ortholog-1 CM000442 pviv_synteny_improved gene 371197 378848 . - . ID=MAL7P1.29_ortholog;clustalpid=37.05;query=MAL7P1.29;improved=1;replaced_genes=PVX_088030,PVX_088025;Name=PVX_088030;gene_type=protein CM000442 pviv_synteny_improved mRNA 371197 378848 . - . ID=mrna_MAL7P1.29_ortholog;Name=mrna_MAL7P1.29_ortholog;Parent=MAL7P1.29_ortholog CM000442 pviv_synteny_improved CDS 372782 378848 . - . ID=cds_gw_MAL7P1.29_ortholog-1;Name=cds_gw_MAL7P1.29_ortholog-1;Parent=mrna_MAL7P1.29_ortholog CM000442 pviv_synteny_improved CDS 371197 372206 . - . ID=cds_down_MAL7P1.29_ortholog-2;Name=cds_down_MAL7P1.29_ortholog-2;Parent=mrna_MAL7P1.29_ortholog CM000448 pviv_synteny_improved gene 991258 1001001 . - . ID=PFI1280c_ortholog;clustalpid=19.90;query=PFI1280c;description=protein+kinase,+putative;Note=PFI1280c (19.9/100.0);gene_type=protein;improved=1;replaced_genes=PVX_099730,PVX_099725;Name=PVX_099730 CM000448 pviv_synteny_improved mRNA 991258 1001001 . - . ID=rna_PFI1280c_ortholog-1;description=protein+kinase,+putative;size=4065;ontology_term=GO:0006468,GO:0004672,GO:0004674,GO:0004713,GO:0005524;Dbxref=ApiDB_PlasmoDB:PVX_099725,NCBI_gi:148803668,NCBI_gi:156097522,taxon:126793;Name=PFI1280c_ortholog-1;Parent=PFI1280c_ortholog CM000448 pviv_synteny_improved CDS 991258 1001001 . - . ID=cds_PFI1280c_ortholog-1;Name=cds_PFI1280c_ortholog-1;description=.;size=4065;Parent=rna_PFI1280c_ortholog-1 CM000454 pviv_synteny_improved gene 542354 543210 . - . ID=PVX_300062;clustalpid=36.71;pseudogene=0;queryCoverage=99.37;AlignmentGaps=0;gene_type=protein;bitscore=74.84;truncated=1;alignmentLen=157;query=PF14_0351;queryLen=158;improved=1;Name=PVX_300062 CM000454 pviv_synteny_improved mRNA 542354 543210 . - . ID=rna_PVX_300062;truncated=1;pseudogene=0;Name=rna_PVX_300062;Parent=PVX_300062 CM000454 pviv_synteny_improved CDS 542955 543210 . - 0 ID=cds_PVX_300062-1;truncated=1;pseudogene=0;Name=cds_PVX_300062-1;Parent=rna_PVX_300062 CM000454 pviv_synteny_improved CDS 542619 542764 . - 1 ID=cds_PVX_300062-2;truncated=1;pseudogene=0;Name=cds_PVX_300062-2;Parent=rna_PVX_300062 CM000454 pviv_synteny_improved CDS 542354 542410 . - 0 ID=cds_PVX_300062-3;truncated=1;pseudogene=0;Name=cds_PVX_300062-3;Parent=rna_PVX_300062 CM000448 pviv_synteny_improved gene 455994 457484 . + . ID=PVX_099020;clustalpid=26.65;queryCoverage=100.00;AlignmentGaps=12;pseudogene=0;gene_type=protein;bitscore=153.60;truncated=0;alignmentLen=522;query=PFI0565w;queryLen=510;improved=1;replaced_genes=PVX_099020;Name=PVX_099020 CM000448 pviv_synteny_improved mRNA 455994 457484 . + . ID=rna_PVX_099020;truncated=0;pseudogene=0;Name=rna_PVX_099020;Parent=PVX_099020 CM000448 pviv_synteny_improved CDS 455994 457484 . + 0 ID=cds_PVX_099020-1;truncated=0;pseudogene=0;Name=cds_PVX_099020-1;Parent=rna_PVX_099020 CM000445 pviv_synteny_improved gene 110882 111697 . + . ID=PFB0900c_ortholog;query=PFB0900c;improved=1;replaced_genes=PVX_002570;Name=PVX_002570;description=hypothetical+protein;gene_type=protein CM000445 pviv_synteny_improved mRNA 110882 111697 . + . ID=rna_PFB0900c_ortholog-1;Name=PFB0900c_ortholog-1;description=hypothetical+protein;Dbxref=ApiDB_PlasmoDB:PFB0900c_ortholog,NCBI_gi:148801727,NCBI_gi:156093629,taxon:126793;size=351;Parent=PFB0900c_ortholog CM000445 pviv_synteny_improved CDS 110882 111697 . + 0 ID=cds_PFB0900c_ortholog-1;Name=cds_PFB0900c_ortholog-1;description=.;size=351;Parent=rna_PFB0900c_ortholog-1 CM000454 pviv_synteny_improved gene 280143 281876 . - . ID=PFL0380c_ortholog;query=PFL0380c;improved=1;pseudogene=0;Name=PVX_300063;gene_type=protein CM000454 pviv_synteny_improved mRNA 280143 281876 . - . ID=rna_PFL0380c_ortholog;pseudogene=0;Name=rna_PFL0380c_ortholog;Parent=PFL0380c_ortholog CM000454 pviv_synteny_improved CDS 280143 281876 . - 0 ID=cds_PFL0380c_ortholog-1;pseudogene=0;Name=cds_PFL0380c_ortholog-1;Parent=rna_PFL0380c_ortholog CM000448 pviv_synteny_improved gene 1048805 1053069 . + . ID=PFI1335w_ortholog;clustalpid=17.26;query=PFI1335w;description=hypothetical+protein,+conserved;Note=PFI1335w (17.3/100.0);gene_type=protein;improved=1;replaced_genes=PVX_099795,PVX_099800;Name=PVX_099795 CM000448 pviv_synteny_improved mRNA 1048805 1053069 . + . ID=rna_PFI1335w_ortholog-1;description=hypothetical+protein,+conserved;size=849;ontology_term=GO:0003676,GO:0008270;Dbxref=ApiDB_PlasmoDB:PVX_099795,NCBI_gi:148803682,NCBI_gi:156097550,taxon:126793;Name=PFI1335w_ortholog-1;Parent=PFI1335w_ortholog CM000448 pviv_synteny_improved CDS 1050032 1050847 . + 1 ID=cds_PFI1335w_ortholog-4;Name=cds_PFI1335w_ortholog-4;Parent=rna_PFI1335w_ortholog-1 CM000448 pviv_synteny_improved CDS 1049414 1049848 . + 1 ID=cds_PFI1335w_ortholog-3;Name=cds_PFI1335w_ortholog-3;Parent=rna_PFI1335w_ortholog-1 CM000448 pviv_synteny_improved CDS 1050965 1053069 . + 1 ID=cds_PFI1335w_ortholog-5;Name=cds_PFI1335w_ortholog-5;Parent=rna_PFI1335w_ortholog-1 CM000448 pviv_synteny_improved CDS 1049029 1049158 . + 0 ID=cds_PFI1335w_ortholog-2;Name=cds_PFI1335w_ortholog-2;Parent=rna_PFI1335w_ortholog-1 CM000448 pviv_synteny_improved CDS 1048805 1048918 . + 0 ID=cds_PFI1335w_ortholog-1;Name=cds_PFI1335w_ortholog-1;Parent=rna_PFI1335w_ortholog-1 CM000448 pviv_synteny_improved gene 520430 521011 . + . ID=PVX_300064;clustalpid=34.88;pseudogene=0;queryCoverage=98.84;AlignmentGaps=0;gene_type=protein;bitscore=32.65;truncated=0;alignmentLen=85;query=PFI0675w;queryLen=86;improved=1;Name=PVX_300064 CM000448 pviv_synteny_improved mRNA 520430 521011 . + . ID=rna_PVX_300064;truncated=0;pseudogene=0;Name=rna_PVX_300064;Parent=PVX_300064 CM000448 pviv_synteny_improved CDS 520430 520559 . + 0 ID=cds_PVX_300064-1;truncated=0;pseudogene=0;Name=cds_PVX_300064-1;Parent=rna_PVX_300064 CM000448 pviv_synteny_improved CDS 520926 521011 . + 1 ID=cds_PVX_300064-2;truncated=0;pseudogene=0;Name=cds_PVX_300064-2;Parent=rna_PVX_300064 CM000445 pviv_synteny_improved gene 766712 767634 . + . ID=PVX_300065;clustalpid=44.35;pseudogene=0;queryCoverage=98.33;AlignmentGaps=4;gene_type=protein;bitscore=97.08;truncated=1;alignmentLen=122;query=PFB0135w;queryLen=120;improved=1;Name=PVX_300065 CM000445 pviv_synteny_improved mRNA 766712 767634 . + . ID=rna_PVX_300065;truncated=1;pseudogene=0;Name=rna_PVX_300065;Parent=PVX_300065 CM000445 pviv_synteny_improved CDS 766712 766748 . + 0 ID=cds_PVX_300065-1;truncated=1;pseudogene=0;Name=cds_PVX_300065-1;Parent=rna_PVX_300065 CM000445 pviv_synteny_improved CDS 766980 767060 . + 1 ID=cds_PVX_300065-2;truncated=1;pseudogene=0;Name=cds_PVX_300065-2;Parent=rna_PVX_300065 CM000445 pviv_synteny_improved CDS 767381 767634 . + 1 ID=cds_PVX_300065-3;truncated=1;pseudogene=0;Name=cds_PVX_300065-3;Parent=rna_PVX_300065 CM000444 pviv_synteny_improved gene 608154 608645 . - . ID=PVX_300066;clustalpid=41.90;pseudogene=0;queryCoverage=99.04;AlignmentGaps=1;gene_type=protein;bitscore=85.02;truncated=1;alignmentLen=104;query=MAL7P1.105;queryLen=104;improved=1;Name=PVX_300066 CM000444 pviv_synteny_improved mRNA 608154 608645 . - . ID=rna_PVX_300066;truncated=1;pseudogene=0;Name=rna_PVX_300066;Parent=PVX_300066 CM000444 pviv_synteny_improved CDS 608560 608645 . - 0 ID=cds_PVX_300066-1;truncated=1;pseudogene=0;Name=cds_PVX_300066-1;Parent=rna_PVX_300066 CM000444 pviv_synteny_improved CDS 608154 608379 . - 2 ID=cds_PVX_300066-2;truncated=1;pseudogene=0;Name=cds_PVX_300066-2;Parent=rna_PVX_300066 CM000443 pviv_synteny_improved gene 416095 427505 . - . ID=PFA0220w_ortholog;clustalpid=23.26;query=PFA0220w;improved=1;replaced_genes=PVX_081540,PVX_081545;Name=PVX_081545;gene_type=protein CM000443 pviv_synteny_improved mRNA 416095 427505 . - . ID=mRNA_PFA0220w_ortholog;Parent=PFA0220w_ortholog CM000443 pviv_synteny_improved CDS 416095 416434 . - . ID=cds_PFA0220w_ortholog-1;Parent=mRNA_PFA0220w_ortholog CM000443 pviv_synteny_improved CDS 419493 427505 . - . ID=cds_PFA0220w_ortholog-3;Parent=mRNA_PFA0220w_ortholog CM000443 pviv_synteny_improved CDS 416632 419306 . - . ID=cds_PFA0220w_ortholog-2;Parent=mRNA_PFA0220w_ortholog CM000443 pviv_synteny_improved gene 605003 605936 . - . ID=PVX_300067;clustalpid=55.24;pseudogene=0;queryCoverage=98.60;AlignmentGaps=0;gene_type=protein;bitscore=135.07;truncated=0;alignmentLen=141;query=MAL7P1.154a;queryLen=143;improved=1;Name=PVX_300067 CM000443 pviv_synteny_improved mRNA 605003 605936 . - . ID=rna_PVX_300067;truncated=0;pseudogene=0;Name=rna_PVX_300067;Parent=PVX_300067 CM000443 pviv_synteny_improved CDS 605794 605936 . - 0 ID=cds_PVX_300067-1;truncated=0;pseudogene=0;Name=cds_PVX_300067-1;Parent=rna_PVX_300067 CM000443 pviv_synteny_improved CDS 605380 605522 . - 2 ID=cds_PVX_300067-2;truncated=0;pseudogene=0;Name=cds_PVX_300067-2;Parent=rna_PVX_300067 CM000443 pviv_synteny_improved CDS 605137 605234 . - 1 ID=cds_PVX_300067-3;truncated=0;pseudogene=0;Name=cds_PVX_300067-3;Parent=rna_PVX_300067 CM000443 pviv_synteny_improved CDS 605003 605047 . - 0 ID=cds_PVX_300067-4;truncated=0;pseudogene=0;Name=cds_PVX_300067-4;Parent=rna_PVX_300067 CM000445 pviv_synteny_improved gene 684206 686277 . + . ID=PFB0227c_ortholog;query=PFB0227c;improved=1;replaced_genes=PVX_003685;Name=PVX_003685;description=hypothetical+protein;gene_type=protein CM000445 pviv_synteny_improved mRNA 684206 686277 . + . ID=rna_PFB0227c_ortholog-1;Name=PFB0227c_ortholog-1;description=hypothetical+protein;Dbxref=ApiDB_PlasmoDB:PFB0227c_ortholog,NCBI_gi:148801850,NCBI_gi:156093876,taxon:126793;size=588;Parent=PFB0227c_ortholog CM000445 pviv_synteny_improved CDS 684568 684645 . + 1 ID=cds_PFB0227c_ortholog-2;Name=cds_PFB0227c_ortholog-2;Parent=rna_PFB0227c_ortholog-1 CM000445 pviv_synteny_improved CDS 684206 684440 . + 0 ID=cds_PFB0227c_ortholog-1;Name=cds_PFB0227c_ortholog-1;Parent=rna_PFB0227c_ortholog-1 CM000445 pviv_synteny_improved CDS 684818 685340 . + 1 ID=cds_PFB0227c_ortholog-3;Name=cds_PFB0227c_ortholog-3;Parent=rna_PFB0227c_ortholog-1 CM000445 pviv_synteny_improved CDS 685690 686277 . + 0 ID=cds_PFB0227c_ortholog-4;Name=cds_PFB0227c_ortholog-4;Parent=rna_PFB0227c_ortholog-1 CM000451 pviv_synteny_improved gene 828231 828824 . + . ID=PVX_300068;clustalpid=31.10;pseudogene=0;queryCoverage=100.00;AlignmentGaps=4;gene_type=protein;bitscore=97.67;truncated=0;alignmentLen=212;query=PFE0575c;queryLen=208;improved=1;Name=PVX_300068 CM000451 pviv_synteny_improved mRNA 828231 828824 . + . ID=rna_PVX_300068;truncated=0;pseudogene=0;Name=rna_PVX_300068;Parent=PVX_300068 CM000451 pviv_synteny_improved CDS 828231 828824 . + 0 ID=cds_PVX_300068-1;truncated=0;pseudogene=0;Name=cds_PVX_300068-1;Parent=rna_PVX_300068 CM000447 pviv_synteny_improved gene 414496 418710 . - . ID=PF10_0234_ortholog;clustalpid=10.68;query=PF10_0234;improved=1;replaced_genes=PVX_111505,PVX_111510;Name=PVX_111505;gene_type=protein CM000447 pviv_synteny_improved mRNA 414496 418710 . - . ID=rna_PF10_0234_ortholog-1;Name=PF10_0234_ortholog-1;Parent=PF10_0234_ortholog CM000447 pviv_synteny_improved CDS 414496 418710 . - . ID=cds_PF10_0234_ortholog-1;Name=cds_PF10_0234_ortholog-1;Parent=rna_PF10_0234_ortholog-1 CM000450 pviv_synteny_improved gene 258773 259274 . + . ID=PVX_300069;clustalpid=47.66;pseudogene=0;queryCoverage=100.00;AlignmentGaps=0;gene_type=protein;bitscore=123.95;truncated=1;alignmentLen=107;query=PF11_0095a;queryLen=107;improved=1;Name=PVX_300069 CM000450 pviv_synteny_improved mRNA 258773 259274 . + . ID=rna_PVX_300069;truncated=1;pseudogene=0;Name=rna_PVX_300069;Parent=PVX_300069 CM000450 pviv_synteny_improved CDS 258773 258889 . + 0 ID=cds_PVX_300069-1;truncated=1;pseudogene=0;Name=cds_PVX_300069-1;Parent=rna_PVX_300069 CM000450 pviv_synteny_improved CDS 259071 259274 . + 0 ID=cds_PVX_300069-2;truncated=1;pseudogene=0;Name=cds_PVX_300069-2;Parent=rna_PVX_300069 CM000452 pviv_synteny_improved gene 521780 524903 . + . ID=MAL13P1.294_ortholog;clustalpid=95.37;query=MAL13P1.294,PFE1215c;improved=1;replaced_genes=PVX_114920,PVX_114915;Name=PVX_114920;gene_type=protein CM000452 pviv_synteny_improved mRNA 521780 524903 . + . ID=rna_MAL13P1.294_ortholog-1;Parent=MAL13P1.294_ortholog CM000452 pviv_synteny_improved CDS 522884 522975 . + 1 ID=cds_MAL13P1.294_ortholog-6;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 523314 523359 . + 2 ID=cds_MAL13P1.294_ortholog-8;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 521882 521938 . + 0 ID=cds_MAL13P1.294_ortholog-2;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 524217 524371 . + 2 ID=cds_MAL13P1.294_ortholog-12;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 522110 522150 . + 0 ID=cds_MAL13P1.294_ortholog-3;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 523135 523220 . + 0 ID=cds_MAL13P1.294_ortholog-7;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 524857 524903 . + 1 ID=cds_MAL13P1.294_ortholog-15;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 524660 524735 . + 0 ID=cds_MAL13P1.294_ortholog-14;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 523730 523810 . + 0 ID=cds_MAL13P1.294_ortholog-10;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 522596 522723 . + 2 ID=cds_MAL13P1.294_ortholog-5;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 524521 524561 . + 1 ID=cds_MAL13P1.294_ortholog-13;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 521780 521794 . + 0 ID=cds_MAL13P1.294_ortholog-1;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 523525 523587 . + 0 ID=cds_MAL13P1.294_ortholog-9;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 523923 524035 . + 0 ID=cds_MAL13P1.294_ortholog-11;Parent=rna_MAL13P1.294_ortholog-1 CM000452 pviv_synteny_improved CDS 522379 522438 . + 2 ID=cds_MAL13P1.294_ortholog-4;Parent=rna_MAL13P1.294_ortholog-1 CM000449 pviv_synteny_improved gene 265523 266284 . - . ID=PVX_300070;clustalpid=26.49;pseudogene=0;queryCoverage=100.00;AlignmentGaps=7;gene_type=protein;bitscore=55.88;truncated=1;alignmentLen=273;query=PF10_0056;queryLen=266;improved=1;Name=PVX_300070 CM000449 pviv_synteny_improved mRNA 265523 266284 . - . ID=rna_PVX_300070;truncated=1;pseudogene=0;Name=rna_PVX_300070;Parent=PVX_300070 CM000449 pviv_synteny_improved CDS 265523 266284 . - 0 ID=cds_PVX_300070-1;truncated=1;pseudogene=0;Name=cds_PVX_300070-1;Parent=rna_PVX_300070 CM000454 pviv_synteny_improved gene 138234 139116 . + . ID=PFL0245w_ortholog;query=PFL0245w;pseudogene=0;gene_type=protein;truncated=1;improved=1;Name=PVX_300071 CM000454 pviv_synteny_improved mRNA 138234 139116 . + . ID=rna_PFL0245w_ortholog;truncated=1;pseudogene=0;Parent=PFL0245w_ortholog CM000454 pviv_synteny_improved CDS 139000 139116 . + 0 ID=cds_PFL0245w_ortholog-4;truncated=1;pseudogene=0;Parent=rna_PFL0245w_ortholog CM000454 pviv_synteny_improved CDS 138369 138434 . + 1 ID=cds_PFL0245w_ortholog-2;truncated=1;pseudogene=0;Parent=rna_PFL0245w_ortholog CM000454 pviv_synteny_improved CDS 138234 138270 . + 0 ID=cds_PFL0245w_ortholog-1;truncated=1;pseudogene=0;Parent=rna_PFL0245w_ortholog CM000454 pviv_synteny_improved CDS 138713 138828 . + 1 ID=cds_PFL0245w_ortholog-3;truncated=1;pseudogene=0;Parent=rna_PFL0245w_ortholog CM000453 pviv_synteny_improved gene 366921 372360 . - . ID=MAL13P1.222_ortholog;clustalpid=8.47;query=MAL13P1.222;description=hypothetical+protein;Note=MAL13P1.222 (22.5/100.0);gene_type=protein;improved=1;replaced_genes=PVX_083140,PVX_083145;Name=PVX_083140 CM000453 pviv_synteny_improved mRNA 366921 372360 . - . ID=rna_MAL13P1.222_ortholog-1;Name=MAL13P1.222_ortholog-1;description=hypothetical+protein;Dbxref=ApiDB_PlasmoDB:PVX_083140,NCBI_gi:148803101,NCBI_gi:156096386,taxon:126793;size=2781;Parent=MAL13P1.222_ortholog CM000453 pviv_synteny_improved UTR 371669 372360 . - . ID=utr_MAL13P1.222_ortholog-1R;Name=utr_MAL13P1.222_ortholog-1R;description=exon;size=2749;Parent=rna_MAL13P1.222_ortholog-1 CM000453 pviv_synteny_improved CDS 366921 371669 . - 0 ID=cds_MAL13P1.222_ortholog-1;Name=cds_MAL13P1.222_ortholog-1;description=.;size=2749;Parent=rna_MAL13P1.222_ortholog-1 CM000452 pviv_synteny_improved gene 1522396 1522752 . - . ID=PVX_300073;clustalpid=47.06;pseudogene=0;queryCoverage=100.00;AlignmentGaps=1;gene_type=protein;bitscore=152.87;truncated=0;alignmentLen=119;query=PFF0600w;queryLen=118;improved=1;Name=PVX_300073 CM000452 pviv_synteny_improved mRNA 1522396 1522752 . - . ID=rna_PVX_300073;truncated=0;pseudogene=0;Name=rna_PVX_300073;Parent=PVX_300073 CM000452 pviv_synteny_improved CDS 1522396 1522752 . - 0 ID=cds_PVX_300073-1;truncated=0;pseudogene=0;Name=cds_PVX_300073-1;Parent=rna_PVX_300073 CM000453 pviv_synteny_improved gene 1130456 1132945 . - . ID=MAL13P1.138_ortholog;clustalpid=38.04;query=MAL13P1.138;description=hypothetical+protein,+conserved;gene_type=protein;improved=1;replaced_genes=PVX_116605;Name=PVX_116605b CM000453 pviv_synteny_improved mRNA 1130456 1132945 . - . ID=rna_MAL13P1.138_ortholog-1;Name=MAL13P1.138_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PVX_116605,taxon:126793;Parent=MAL13P1.138_ortholog CM000453 pviv_synteny_improved CDS 1130934 1131079 . - 1 ID=cds_MAL13P1.138_ortholog-4;Name=cds_MAL13P1.138_ortholog-4;description=.;size=146;Parent=rna_MAL13P1.138_ortholog-1 CM000453 pviv_synteny_improved CDS 1131649 1132945 . - 0 ID=cds_MAL13P1.138_ortholog-2;Name=cds_MAL13P1.138_ortholog-2;description=.;size=1006;Parent=rna_MAL13P1.138_ortholog-1 CM000453 pviv_synteny_improved CDS 1130456 1130522 . - 1 ID=cds_MAL13P1.138_ortholog-6;Name=cds_MAL13P1.138_ortholog-6;description=.;size=67;Parent=rna_MAL13P1.138_ortholog-1 CM000453 pviv_synteny_improved CDS 1131208 1131250 . - 2 ID=cds_MAL13P1.138_ortholog-3;Name=cds_MAL13P1.138_ortholog-3;description=.;size=43;Parent=rna_MAL13P1.138_ortholog-1 CM000453 pviv_synteny_improved CDS 1130675 1130807 . - 2 ID=cds_MAL13P1.138_ortholog-5;Name=cds_MAL13P1.138_ortholog-5;description=.;size=133;Parent=rna_MAL13P1.138_ortholog-1 CM000453 pviv_synteny_improved gene 1133589 1142444 . - . ID=MAL13P1.137_ortholog;clustalpid=13.28;query=MAL13P1.137;description=hypothetical+protein,+conserved;gene_type=protein;improved=1;replaced_genes=PVX_116605;Name=PVX_116605a CM000453 pviv_synteny_improved mRNA 1133589 1142444 . - . ID=rna_MAL13P1.137_ortholog-1;Name=MAL13P1.137_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PVX_116605,taxon:126793;Parent=MAL13P1.137_ortholog CM000453 pviv_synteny_improved CDS 1133589 1142444 . - 0 ID=cds_MAL13P1.137_ortholog-1;Name=cds_MAL13P1.137_ortholog-1;description=.;size=8793;Parent=rna_MAL13P1.137_ortholog-1 CM000443 pviv_synteny_improved gene 226218 227211 . + . ID=PVX_300074;clustalpid=52.96;pseudogene=0;queryCoverage=99.60;AlignmentGaps=4;gene_type=protein;bitscore=276.08;truncated=1;alignmentLen=252;query=PFA0505c;queryLen=249;improved=1;Name=PVX_300074 CM000443 pviv_synteny_improved mRNA 226218 227211 . + . ID=rna_PVX_300074;truncated=1;pseudogene=0;Name=rna_PVX_300074;Parent=PVX_300074 CM000443 pviv_synteny_improved CDS 226218 226384 . + 0 ID=cds_PVX_300074-1;truncated=1;pseudogene=0;Name=cds_PVX_300074-1;Parent=rna_PVX_300074 CM000443 pviv_synteny_improved CDS 226629 227211 . + 2 ID=cds_PVX_300074-2;truncated=1;pseudogene=0;Name=cds_PVX_300074-2;Parent=rna_PVX_300074 CM000454 pviv_synteny_improved gene 1963522 1964805 . + . ID=PF14_0031b_ortholog;clustalpid=20.33;query=PF14_0031b;description=hypothetical+protein;Note=PF14_0031b (20.6/100.0);gene_type=protein;improved=1;replaced_genes=PVX_086270;Name=PVX_086270b CM000454 pviv_synteny_improved mRNA 1963522 1964805 . + . ID=rna_PF14_0031b_ortholog-1;Name=PF14_0031b_ortholog-1;description=hypothetical+protein;Dbxref=ApiDB_PlasmoDB:PF14_0031b_ortholog,NCBI_gi:148805791,NCBI_gi:156102448,taxon:126793;size=5880;Parent=PF14_0031b_ortholog CM000454 pviv_synteny_improved CDS 1963522 1964805 . + 0 ID=cds_PF14_0031b_ortholog-2;Name=cds_PF14_0031b_ortholog-2;description=.;size=1284;Parent=rna_PF14_0031b_ortholog-1 CM000454 pviv_synteny_improved gene 1958926 1962606 . + . ID=PF14_0031_ortholog;clustalpid=27.41;query=PF14_0031;description=hypothetical+protein;Note=PF14_0031 (27.4/100.0);gene_type=protein;improved=1;replaced_genes=PVX_086270;Name=PVX_086270a CM000454 pviv_synteny_improved mRNA 1958926 1962606 . + . ID=rna_PF14_0031_ortholog-1;Name=PF14_0031_ortholog-1;description=hypothetical+protein;Dbxref=ApiDB_PlasmoDB:PF14_0031_ortholog,NCBI_gi:148805791,NCBI_gi:156102448,taxon:126793;size=5880;Parent=PF14_0031_ortholog CM000454 pviv_synteny_improved CDS 1958926 1962606 . + 0 ID=cds_PF14_0031_ortholog-1;Name=cds_PF14_0031_ortholog-1;description=.;size=3681;Parent=rna_PF14_0031_ortholog-1 CM000443 pviv_synteny_improved gene 614859 617373 . - . ID=PVX_081735;clustalpid=41.11;query=MAL7P1.156;improved=1;replaced_genes=PVX_081735%2CPVX_081730;gene_type=protein;Name=PVX_081735 CM000443 pviv_synteny_improved mRNA 614859 617373 . - . ID=mrna_PVX_081735;Name=mrna_PVX_081735;Parent=PVX_081735 CM000443 pviv_synteny_improved CDS 617338 617373 . - . ID=cds_up_PVX_081735-1;Name=cds_up_PVX_081735-1;Parent=mrna_PVX_081735 CM000443 pviv_synteny_improved CDS 616457 617215 . - . ID=cds_up_PVX_081735-2;Name=cds_up_PVX_081735-2;Parent=mrna_PVX_081735 CM000443 pviv_synteny_improved CDS 616075 616175 . - . ID=cds_gw_PVX_081735-4;Name=cds_gw_PVX_081735-4;Parent=mrna_PVX_081735 CM000443 pviv_synteny_improved CDS 614859 615717 . - . ID=cds_gw_PVX_081735-5;Name=cds_gw_PVX_081735-5;Parent=mrna_PVX_081735 CM000452 pviv_synteny_improved gene 871533 879299 . - . ID=PFF1370w_ortholog;query=PFF1370w;improved=1;pseudogene=0;Name=PVX_300076;gene_type=protein CM000452 pviv_synteny_improved mRNA 871533 879299 . - . ID=rna_PFF1370w_ortholog-1;pseudogene=0;Name=rna_PFF1370w_ortholog-1;Parent=PFF1370w_ortholog CM000452 pviv_synteny_improved CDS 871533 879299 . - 0 ID=cds_PFF1370w_ortholog-1;pseudogene=0;Name=cds_PFF1370w_ortholog-1;Parent=rna_PFF1370w_ortholog-1 CM000453 pviv_synteny_improved gene 2577504 2578749 . - . ID=PVX_300077;clustalpid=49.34;pseudogene=0;queryCoverage=99.12;AlignmentGaps=0;gene_type=protein;bitscore=191.89;truncated=0;alignmentLen=225;query=PF14_0418;queryLen=227;improved=1;Name=PVX_300077 CM000453 pviv_synteny_improved mRNA 2577504 2578749 . - . ID=rna_PVX_300077;truncated=0;pseudogene=0;Name=rna_PVX_300077;Parent=PVX_300077 CM000453 pviv_synteny_improved CDS 2578649 2578749 . - 0 ID=cds_PVX_300077-1;truncated=0;pseudogene=0;Name=cds_PVX_300077-1;Parent=rna_PVX_300077 CM000453 pviv_synteny_improved CDS 2578316 2578513 . - 2 ID=cds_PVX_300077-2;truncated=0;pseudogene=0;Name=cds_PVX_300077-2;Parent=rna_PVX_300077 CM000453 pviv_synteny_improved CDS 2577883 2578030 . - 2 ID=cds_PVX_300077-3;truncated=0;pseudogene=0;Name=cds_PVX_300077-3;Parent=rna_PVX_300077 CM000453 pviv_synteny_improved CDS 2577504 2577737 . - 0 ID=cds_PVX_300077-4;truncated=0;pseudogene=0;Name=cds_PVX_300077-4;Parent=rna_PVX_300077 CM000455 pviv_synteny_improved gene 2267117 2278042 . + . ID=PVX_300078;clustalpid=22.66;pseudogene=0;queryCoverage=99.97;AlignmentGaps=92;gene_type=protein;bitscore=590.41;truncated=1;alignmentLen=3987;query=PFL1645w;queryLen=3896;improved=1;Name=PVX_300078 CM000455 pviv_synteny_improved mRNA 2267117 2278042 . + . ID=rna_PVX_300078;truncated=1;pseudogene=0;Name=rna_PVX_300078;Parent=PVX_300078 CM000455 pviv_synteny_improved CDS 2267117 2267292 . + 0 ID=cds_PVX_300078-1;truncated=1;pseudogene=0;Name=cds_PVX_300078-1;Parent=rna_PVX_300078 CM000455 pviv_synteny_improved CDS 2267899 2271434 . + 2 ID=cds_PVX_300078-2;truncated=1;pseudogene=0;Name=cds_PVX_300078-2;Parent=rna_PVX_300078 CM000455 pviv_synteny_improved CDS 2271501 2278042 . + 1 ID=cds_PVX_300078-3;truncated=1;pseudogene=0;Name=cds_PVX_300078-3;Parent=rna_PVX_300078 CM000453 pviv_synteny_improved gene 2398187 2404013 . + . ID=PVX_118080;clustalpid=49.30;query=PF14_0458;improved=1;replaced_genes=PVX_118080%2CPVX_118085;gene_type=protein;Name=PVX_118080 CM000453 pviv_synteny_improved mRNA 2398187 2404013 . + . ID=mrna_PVX_118080;Name=mrna_PVX_118080;Parent=PVX_118080 CM000453 pviv_synteny_improved CDS 2398187 2398252 . + . ID=cds_up_PVX_118080-1;Name=cds_up_PVX_118080-1;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2398423 2398563 . + . ID=cds_up_PVX_118080-2;Name=cds_up_PVX_118080-2;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2398691 2398832 . + . ID=cds_up_PVX_118080-3;Name=cds_up_PVX_118080-3;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2398948 2399102 . + . ID=cds_up_PVX_118080-4;Name=cds_up_PVX_118080-4;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2399224 2399363 . + . ID=cds_up_PVX_118080-5;Name=cds_up_PVX_118080-5;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2399520 2399589 . + . ID=cds_up_PVX_118080-6;Name=cds_up_PVX_118080-6;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2399782 2399859 . + . ID=cds_up_PVX_118080-7;Name=cds_up_PVX_118080-7;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2399984 2400114 . + . ID=cds_up_PVX_118080-8;Name=cds_up_PVX_118080-8;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2400272 2400335 . + . ID=cds_up_PVX_118080-9;Name=cds_up_PVX_118080-9;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2400514 2400576 . + . ID=cds_gw_PVX_118080-11;Name=cds_gw_PVX_118080-11;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2400781 2400824 . + . ID=cds_gw_PVX_118080-12;Name=cds_gw_PVX_118080-12;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2400988 2401066 . + . ID=cds_gw_PVX_118080-13;Name=cds_gw_PVX_118080-13;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2401259 2403174 . + . ID=cds_gw_PVX_118080-14;Name=cds_gw_PVX_118080-14;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2403437 2403551 . + . ID=cds_down_PVX_118080-15;Name=cds_down_PVX_118080-15;Parent=mrna_PVX_118080 CM000453 pviv_synteny_improved CDS 2403654 2404013 . + . ID=cds_down_PVX_118080-16;Name=cds_down_PVX_118080-16;Parent=mrna_PVX_118080 CM000448 pviv_synteny_improved gene 293239 295165 . - . ID=PFI0390c_ortholog;query=PFI0390c;improved=1;pseudogene=0;Name=PVX_300079;gene_type=protein CM000448 pviv_synteny_improved mRNA 293239 295165 . - . ID=rna_PFI0390c_ortholog;pseudogene=0;Name=rna_PFI0390c_ortholog;Parent=PFI0390c_ortholog CM000448 pviv_synteny_improved CDS 293801 295165 . - 0 ID=cds_PFI0390c_ortholog-1;pseudogene=0;Name=cds_PFI0390c_ortholog-1;Parent=rna_PFI0390c_ortholog CM000448 pviv_synteny_improved CDS 293239 293349 . - 0 ID=cds_PFI0390c_ortholog-3;pseudogene=0;Name=cds_PFI0390c_ortholog-3;Parent=rna_PFI0390c_ortholog CM000448 pviv_synteny_improved CDS 293507 293581 . - 0 ID=cds_PFI0390c_ortholog-2;pseudogene=0;Name=cds_PFI0390c_ortholog-2;Parent=rna_PFI0390c_ortholog CM000449 pviv_synteny_improved gene 1370213 1375522 . + . ID=PFC0385c_ortholog;query=PFC0385c;improved=1;replaced_genes=PVX_119575;Name=PVX_119575;description=serine/threonine+protein+kinase+6,+putative;gene_type=protein CM000449 pviv_synteny_improved mRNA 1370213 1375522 . + . ID=rna_PFC0385c_ortholog-1;description=serine/threonine+protein+kinase+6,+putative;size=1362;ontology_term=GO:0006468,GO:0004672,GO:0004674,GO:0004713,GO:0005524;Dbxref=ApiDB_PlasmoDB:PFC0385c_ortholog,NCBI_gi:148801986,NCBI_gi:156094149,taxon:126793;Name=PFC0385c_ortholog-1;Parent=PFC0385c_ortholog CM000449 pviv_synteny_improved CDS 1375445 1375522 . + 0 ID=cds_PFC0385c_ortholog-3;Name=cds_PFC0385c_ortholog-3;description=.;size=78;Parent=rna_PFC0385c_ortholog-1 CM000449 pviv_synteny_improved CDS 1375044 1375127 . + 0 ID=cds_PFC0385c_ortholog-2;Name=cds_PFC0385c_ortholog-2;description=.;size=84;Parent=rna_PFC0385c_ortholog-1 CM000449 pviv_synteny_improved CDS 1370213 1374874 . + 0 ID=cds_PFC0385c_ortholog-1;Name=cds_PFC0385c_ortholog-1;description=.;size=714;Parent=rna_PFC0385c_ortholog-1 CM000454 pviv_synteny_improved gene 725430 742391 . + . ID=PF14_0315_ortholog;clustalpid=23.10;query=PF14_0315;improved=1;replaced_genes=PVX_084860,PVX_084865;Name=PVX_084860;gene_type=protein CM000454 pviv_synteny_improved mRNA 725430 742391 . + . ID=rna_PF14_0315_ortholog;Name=rna_PF14_0315_ortholog;Parent=PF14_0315_ortholog CM000454 pviv_synteny_improved CDS 725430 742391 . + 0 ID=cds_PF14_0315_ortholog-1;Name=cds_PF14_0315_ortholog-1;Parent=rna_PF14_0315_ortholog CM000453 pviv_synteny_improved gene 1369946 1373524 . - . ID=PF14_0683_ortholog;query=PF14_0683;improved=1;pseudogene=0;Name=PVX_300080;gene_type=protein CM000453 pviv_synteny_improved mRNA 1369946 1373524 . - . ID=rna_PF14_0683_ortholog;pseudogene=0;Name=rna_PF14_0683_ortholog;Parent=PF14_0683_ortholog CM000453 pviv_synteny_improved CDS 1369946 1373524 . - 0 ID=cds_PF14_0683_ortholog;pseudogene=0;Name=cds_PF14_0683_ortholog;Parent=rna_PF14_0683_ortholog CM000443 pviv_synteny_improved gene 449320 451447 . - . ID=PFA0185w_ortholog;query=PFA0185w;improved=1;pseudogene=0;Name=PVX_300081;gene_type=protein CM000443 pviv_synteny_improved mRNA 449320 451447 . - . ID=rna_PFA0185w_ortholog;pseudogene=0;Name=rna_PFA0185w_ortholog;Parent=PFA0185w_ortholog CM000443 pviv_synteny_improved CDS 449834 450103 . - 1 ID=cds_PFA0185w_ortholog-2;pseudogene=0;Name=cds_PFA0185w_ortholog-2;Parent=rna_PFA0185w_ortholog CM000443 pviv_synteny_improved CDS 449582 449724 . - 1 ID=cds_PFA0185w_ortholog-3;pseudogene=0;Name=cds_PFA0185w_ortholog-3;Parent=rna_PFA0185w_ortholog CM000443 pviv_synteny_improved CDS 449320 449397 . - 0 ID=cds_PFA0185w_ortholog-4;pseudogene=0;Name=cds_PFA0185w_ortholog-4;Parent=rna_PFA0185w_ortholog CM000443 pviv_synteny_improved CDS 450274 451447 . - 0 ID=cds_PFA0185w_ortholog-1;pseudogene=0;Name=cds_PFA0185w_ortholog-1;Parent=rna_PFA0185w_ortholog CM000451 pviv_synteny_improved gene 428931 429870 . - . ID=PVX_300082;clustalpid=53.21;pseudogene=0;queryCoverage=100.00;AlignmentGaps=2;gene_type=protein;bitscore=72.71;truncated=1;alignmentLen=109;query=PFE1100w;queryLen=107;improved=1;Name=PVX_300082 CM000451 pviv_synteny_improved mRNA 428931 429870 . - . ID=rna_PVX_300082;truncated=1;pseudogene=0;Name=rna_PVX_300082;Parent=PVX_300082 CM000451 pviv_synteny_improved CDS 429790 429870 . - 0 ID=cds_PVX_300082-1;truncated=1;pseudogene=0;Name=cds_PVX_300082-1;Parent=rna_PVX_300082 CM000451 pviv_synteny_improved CDS 429451 429513 . - 0 ID=cds_PVX_300082-2;truncated=1;pseudogene=0;Name=cds_PVX_300082-2;Parent=rna_PVX_300082 CM000451 pviv_synteny_improved CDS 428931 429113 . - 0 ID=cds_PVX_300082-3;truncated=1;pseudogene=0;Name=cds_PVX_300082-3;Parent=rna_PVX_300082 CM000448 pviv_synteny_improved gene 1216435 1217133 . + . ID=PVX_300083;clustalpid=51.07;pseudogene=0;queryCoverage=99.56;AlignmentGaps=5;gene_type=protein;bitscore=267.17;truncated=1;alignmentLen=233;query=PFI1515w;queryLen=229;improved=1;Name=PVX_300083 CM000448 pviv_synteny_improved mRNA 1216435 1217133 . + . ID=rna_PVX_300083;truncated=1;pseudogene=0;Name=rna_PVX_300083;Parent=PVX_300083 CM000448 pviv_synteny_improved CDS 1216435 1217133 . + 0 ID=cds_PVX_300083-1;truncated=1;pseudogene=0;Name=cds_PVX_300083-1;Parent=rna_PVX_300083 CM000452 pviv_synteny_improved gene 945288 946540 . + . ID=PVX_114465;clustalpid=58.27;queryCoverage=95.68;AlignmentGaps=0;pseudogene=0;gene_type=protein;bitscore=89.93;truncated=1;alignmentLen=133;query=PFF1320c;queryLen=139;improved=1;replaced_genes=PVX_114465;Name=PVX_114465 CM000452 pviv_synteny_improved mRNA 945288 946540 . + . ID=rna_PVX_114465;truncated=1;pseudogene=0;Name=rna_PVX_114465;Parent=PVX_114465 CM000452 pviv_synteny_improved CDS 945288 945338 . + 0 ID=cds_PVX_114465-1;truncated=1;pseudogene=0;Name=cds_PVX_114465-1;Parent=rna_PVX_114465 CM000452 pviv_synteny_improved CDS 945545 945598 . + 0 ID=cds_PVX_114465-2;truncated=1;pseudogene=0;Name=cds_PVX_114465-2;Parent=rna_PVX_114465 CM000452 pviv_synteny_improved CDS 945758 945809 . + 0 ID=cds_PVX_114465-3;truncated=1;pseudogene=0;Name=cds_PVX_114465-3;Parent=rna_PVX_114465 CM000452 pviv_synteny_improved CDS 945939 946042 . + 1 ID=cds_PVX_114465-4;truncated=1;pseudogene=0;Name=cds_PVX_114465-4;Parent=rna_PVX_114465 CM000452 pviv_synteny_improved CDS 946253 946344 . + 0 ID=cds_PVX_114465-5;truncated=1;pseudogene=0;Name=cds_PVX_114465-5;Parent=rna_PVX_114465 CM000452 pviv_synteny_improved CDS 946489 946540 . + 2 ID=cds_PVX_114465-6;truncated=1;pseudogene=0;Name=cds_PVX_114465-6;Parent=rna_PVX_114465 CM000446 pviv_synteny_improved gene 972932 989248 . + . ID=PFD0840w_ortholog;clustalpid=19.17;query=PFD0840w;description=hypothetical+protein;Note=PFD0840w (19.2/100.0);gene_type=protein;improved=1;replaced_genes=PVX_089960,PVX_089965;Name=PVX_089960 CM000446 pviv_synteny_improved mRNA 972932 989248 . + . ID=rna_PFD0840w_ortholog-1;Name=PFD0840w_ortholog-1;description=hypothetical+protein;Dbxref=ApiDB_PlasmoDB:PVX_089960,NCBI_gi:148803958,NCBI_gi:156098103,taxon:126793;Parent=PFD0840w_ortholog CM000446 pviv_synteny_improved CDS 972932 989248 . + . ID=cds_PFD0840w_ortholog-1;Name=cds_PFD0840w_ortholog-1;description=.;size=1373;Parent=rna_PFD0840w_ortholog-1 CM000451 pviv_synteny_improved gene 1175002 1176114 . + . ID=PVX_300084;clustalpid=49.71;pseudogene=0;queryCoverage=100.00;AlignmentGaps=0;gene_type=protein;bitscore=142.56;truncated=1;alignmentLen=173;query=PFE0200c;queryLen=173;improved=1;Name=PVX_300084 CM000451 pviv_synteny_improved mRNA 1175002 1176114 . + . ID=rna_PVX_300084;truncated=1;pseudogene=0;Name=rna_PVX_300084;Parent=PVX_300084 CM000451 pviv_synteny_improved CDS 1175002 1175097 . + 0 ID=cds_PVX_300084-1;truncated=1;pseudogene=0;Name=cds_PVX_300084-1;Parent=rna_PVX_300084 CM000451 pviv_synteny_improved CDS 1175352 1175459 . + 0 ID=cds_PVX_300084-2;truncated=1;pseudogene=0;Name=cds_PVX_300084-2;Parent=rna_PVX_300084 CM000451 pviv_synteny_improved CDS 1175622 1175714 . + 0 ID=cds_PVX_300084-3;truncated=1;pseudogene=0;Name=cds_PVX_300084-3;Parent=rna_PVX_300084 CM000451 pviv_synteny_improved CDS 1175944 1176114 . + 0 ID=cds_PVX_300084-4;truncated=1;pseudogene=0;Name=cds_PVX_300084-4;Parent=rna_PVX_300084 CM000446 pviv_synteny_improved gene 997678 999906 . + . ID=PVX_089975;clustalpid=29.07;queryCoverage=99.61;AlignmentGaps=18;pseudogene=0;gene_type=protein;bitscore=80.02;truncated=1;alignmentLen=529;query=PFD0860w;queryLen=513;improved=1;replaced_genes=PVX_089975;Name=PVX_089975 CM000446 pviv_synteny_improved mRNA 997678 999906 . + . ID=rna_PVX_089975;truncated=1;pseudogene=0;Name=rna_PVX_089975;Parent=PVX_089975 CM000446 pviv_synteny_improved CDS 997678 997723 . + 0 ID=cds_PVX_089975-1;truncated=1;pseudogene=0;Name=cds_PVX_089975-1;Parent=rna_PVX_089975 CM000446 pviv_synteny_improved CDS 997840 997934 . + 1 ID=cds_PVX_089975-2;truncated=1;pseudogene=0;Name=cds_PVX_089975-2;Parent=rna_PVX_089975 CM000446 pviv_synteny_improved CDS 998100 998183 . + 0 ID=cds_PVX_089975-3;truncated=1;pseudogene=0;Name=cds_PVX_089975-3;Parent=rna_PVX_089975 CM000446 pviv_synteny_improved CDS 998383 998557 . + 0 ID=cds_PVX_089975-4;truncated=1;pseudogene=0;Name=cds_PVX_089975-4;Parent=rna_PVX_089975 CM000446 pviv_synteny_improved CDS 998834 999906 . + 1 ID=cds_PVX_089975-5;truncated=1;pseudogene=0;Name=cds_PVX_089975-5;Parent=rna_PVX_089975 CM000450 pviv_synteny_improved gene 787741 788415 . - . ID=PVX_300085;clustalpid=34.73;pseudogene=0;queryCoverage=100.00;AlignmentGaps=8;gene_type=protein;bitscore=138.27;truncated=1;alignmentLen=262;query=PF11_0238;queryLen=254;improved=1;Name=PVX_300085 CM000450 pviv_synteny_improved mRNA 787741 788415 . - . ID=rna_PVX_300085;truncated=1;pseudogene=0;Name=rna_PVX_300085;Parent=PVX_300085 CM000450 pviv_synteny_improved CDS 787741 788415 . - 0 ID=cds_PVX_300085-1;truncated=1;pseudogene=0;Name=cds_PVX_300085-1;Parent=rna_PVX_300085 CM000455 pviv_synteny_improved gene 2219021 2226467 . - . ID=PFL1600c_ortholog;clustalpid=11.42;query=PFL1600c;description=hypothetical+protein;gene_type=protein;improved=1;replaced_genes=PVX_100620,PVX_100615;Name=PVX_100620 CM000455 pviv_synteny_improved mRNA 2219021 2226467 . - . ID=rna_PFL1600c_ortholog-1;Name=PFL1600c_ortholog-1;Parent=PFL1600c_ortholog CM000455 pviv_synteny_improved CDS 2220665 2226467 . - 0 ID=cds_PFL1600c_ortholog-1;Name=cds_PFL1600c_ortholog-1;Parent=rna_PFL1600c_ortholog-1 CM000455 pviv_synteny_improved CDS 2219021 2219058 . - 2 ID=cds_PFL1600c_ortholog-3;Name=cds_PFL1600c_ortholog-3;Parent=rna_PFL1600c_ortholog-1 CM000455 pviv_synteny_improved CDS 2219135 2220301 . - 2 ID=cds_PFL1600c_ortholog-2;Name=cds_PFL1600c_ortholog-2;Parent=rna_PFL1600c_ortholog-1 CM000442 pviv_synteny_improved gene 538952 540693 . + . ID=PVX_300161;clustalpid=30.49;query=MAL8P1.136;improved=1;replaced_genes=PVX_088255;gene_type=protein;Name=PVX_300161 CM000442 pviv_synteny_improved mRNA 538952 540693 . + . ID=mrna_PVX_300161;Name=mrna_PVX_300161;Parent=PVX_300161 CM000442 pviv_synteny_improved CDS 538952 539004 . + . ID=cds_PVX_300161-1;Name=cds_PVX_300161-1;Parent=mrna_PVX_300161 CM000442 pviv_synteny_improved CDS 539181 539331 . + . ID=cds_PVX_300161-2;Name=cds_PVX_300161-2;Parent=mrna_PVX_300161 CM000442 pviv_synteny_improved CDS 539519 539611 . + . ID=cds_PVX_300161-3;Name=cds_PVX_300161-3;Parent=mrna_PVX_300161 CM000442 pviv_synteny_improved CDS 539740 539880 . + . ID=cds_PVX_300161-4;Name=cds_PVX_300161-4;Parent=mrna_PVX_300161 CM000442 pviv_synteny_improved CDS 540021 540375 . + . ID=cds_PVX_300161-5;Name=cds_PVX_300161-5;Parent=mrna_PVX_300161 CM000442 pviv_synteny_improved CDS 541320 540693 . + . ID=cds_PVX_300161-6;Name=cds_PVX_300161-6;Parent=mrna_PVX_300161 CM000442 pviv_synteny_improved gene 541397 542689 . + . ID=PVX_300162;clustalpid=34.19;query=MAL8P1.136a;improved=1;replaced_genes=PVX_088255;gene_type=protein;Name=PVX_300162 CM000442 pviv_synteny_improved mRNA 541397 542689 . + . ID=mrna_PVX_300162;Name=mrna_PVX_300162;Parent=PVX_300162 CM000442 pviv_synteny_improved CDS 541397 542689 . + . ID=cds_PVX_300162-1;Name=cds_PVX_300162-1;Parent=mrna_PVX_300162 CM000446 pviv_synteny_improved gene 649795 651174 . + . ID=PVX_300086;clustalpid=18.34;pseudogene=0;queryCoverage=100.00;AlignmentGaps=1;gene_type=protein;bitscore=-42.14;truncated=1;alignmentLen=726;query=MAL8P1.74;queryLen=725;improved=1;Name=PVX_300086 CM000446 pviv_synteny_improved mRNA 649795 651174 . + . ID=rna_PVX_300086;truncated=1;pseudogene=0;Name=rna_PVX_300086;Parent=PVX_300086 CM000446 pviv_synteny_improved CDS 649795 651174 . + 0 ID=cds_PVX_300086-1;truncated=1;pseudogene=0;Name=cds_PVX_300086-1;Parent=rna_PVX_300086 CM000442 pviv_synteny_improved gene 676336 677863 . - . ID=MAL8P1.149_ortholog;query=MAL8P1.149;improved=1;pseudogene=0;Name=PVX_300087;gene_type=protein CM000442 pviv_synteny_improved mRNA 676336 677863 . - . ID=rna_MAL8P1.149_ortholog;pseudogene=0;Name=rna_MAL8P1.149_ortholog;Parent=MAL8P1.149_ortholog CM000442 pviv_synteny_improved CDS 676336 676428 . - 0 ID=cds_MAL8P1.149_ortholog-5;pseudogene=0;Name=cds_MAL8P1.149_ortholog-5;Parent=rna_MAL8P1.149_ortholog CM000442 pviv_synteny_improved CDS 677280 677494 . - 1 ID=cds_MAL8P1.149_ortholog-2;pseudogene=0;Name=cds_MAL8P1.149_ortholog-2;Parent=rna_MAL8P1.149_ortholog CM000442 pviv_synteny_improved CDS 676549 676884 . - 0 ID=cds_MAL8P1.149_ortholog-4;pseudogene=0;Name=cds_MAL8P1.149_ortholog-4;Parent=rna_MAL8P1.149_ortholog CM000442 pviv_synteny_improved CDS 677734 677863 . - 0 ID=cds_MAL8P1.149_ortholog-1;pseudogene=0;Name=cds_MAL8P1.149_ortholog-1;Parent=rna_MAL8P1.149_ortholog CM000442 pviv_synteny_improved CDS 676996 677169 . - 0 ID=cds_MAL8P1.149_ortholog-3;pseudogene=0;Name=cds_MAL8P1.149_ortholog-3;Parent=rna_MAL8P1.149_ortholog CM000453 pviv_synteny_improved gene 1358325 1364611 . + . ID=PVX_116882;clustalpid=20.53;query=PF14_0686;improved=1;replaced_genes=PVX_116882%2CPVX_116885;gene_type=protein;Name=PVX_116882 CM000453 pviv_synteny_improved mRNA 1358325 1364611 . + . ID=mrna_PVX_116882;Name=mrna_PVX_116882;Parent=PVX_116882 CM000453 pviv_synteny_improved CDS 1358325 1360151 . + . ID=cds_gw_PVX_116882-2;Name=cds_gw_PVX_116882-2;Parent=mrna_PVX_116882 CM000453 pviv_synteny_improved CDS 1360430 1364611 . + . ID=cds_gw_PVX_116882-3;Name=cds_gw_PVX_116882-3;Parent=mrna_PVX_116882 CM000453 pviv_synteny_improved gene 1366824 1369118 . - . ID=PF14_0684_ortholog;query=PF14_0684;improved=1;pseudogene=0;Name=PVX_300088;gene_type=protein CM000453 pviv_synteny_improved mRNA 1366824 1369118 . - . ID=rna_PF14_0684_ortholog;pseudogene=0;Name=rna_PF14_0684_ortholog;Parent=PF14_0684_ortholog CM000453 pviv_synteny_improved CDS 1366824 1369118 . - 0 ID=cds_PF14_0684_ortholog;pseudogene=0;Name=cds_PF14_0684_ortholog;Parent=rna_PF14_0684_ortholog CM000453 pviv_synteny_improved gene 54766 58068 . + . ID=PVX_083525;clustalpid=47.69;query=MAL13P1.267;improved=1;replaced_genes=PVX_083525%2CPVX_083520;gene_type=protein;Name=PVX_083525 CM000453 pviv_synteny_improved mRNA 54766 58068 . + . ID=mrna_PVX_083525;Name=mrna_PVX_083525;Parent=PVX_083525 CM000453 pviv_synteny_improved CDS 54766 55075 . + . ID=cds_up_PVX_083525-1;Name=cds_up_PVX_083525-1;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 55221 55294 . + . ID=cds_up_PVX_083525-2;Name=cds_up_PVX_083525-2;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 55465 55511 . + . ID=cds_up_PVX_083525-3;Name=cds_up_PVX_083525-3;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 55658 55755 . + . ID=cds_up_PVX_083525-4;Name=cds_up_PVX_083525-4;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 56143 56279 . + . ID=cds_gw_PVX_083525-6;Name=cds_gw_PVX_083525-6;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 56361 56470 . + . ID=cds_gw_PVX_083525-7;Name=cds_gw_PVX_083525-7;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 56724 56816 . + . ID=cds_gw_PVX_083525-8;Name=cds_gw_PVX_083525-8;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 56965 57050 . + . ID=cds_gw_PVX_083525-9;Name=cds_gw_PVX_083525-9;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 57181 57284 . + . ID=cds_gw_PVX_083525-10;Name=cds_gw_PVX_083525-10;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 57564 57618 . + . ID=cds_gw_PVX_083525-11;Name=cds_gw_PVX_083525-11;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 57756 57839 . + . ID=cds_down_PVX_083525-12;Name=cds_down_PVX_083525-12;Parent=mrna_PVX_083525 CM000453 pviv_synteny_improved CDS 58031 58068 . + . ID=cds_down_PVX_083525-13;Name=cds_down_PVX_083525-13;Parent=mrna_PVX_083525 CM000455 pviv_synteny_improved gene 2824410 2825700 . - . ID=PVX_300089;clustalpid=56.60;pseudogene=0;queryCoverage=100.00;AlignmentGaps=0;gene_type=protein;bitscore=93.18;truncated=1;alignmentLen=159;query=PFL2375c;queryLen=159;improved=1;Name=PVX_300089 CM000455 pviv_synteny_improved mRNA 2824410 2825700 . - . ID=rna_PVX_300089;truncated=1;pseudogene=0;Name=rna_PVX_300089;Parent=PVX_300089 CM000455 pviv_synteny_improved CDS 2825494 2825700 . - 0 ID=cds_PVX_300089-1;truncated=1;pseudogene=0;Name=cds_PVX_300089-1;Parent=rna_PVX_300089 CM000455 pviv_synteny_improved CDS 2825195 2825287 . - 0 ID=cds_PVX_300089-2;truncated=1;pseudogene=0;Name=cds_PVX_300089-2;Parent=rna_PVX_300089 CM000455 pviv_synteny_improved CDS 2824946 2825044 . - 0 ID=cds_PVX_300089-3;truncated=1;pseudogene=0;Name=cds_PVX_300089-3;Parent=rna_PVX_300089 CM000455 pviv_synteny_improved CDS 2824787 2824819 . - 0 ID=cds_PVX_300089-4;truncated=1;pseudogene=0;Name=cds_PVX_300089-4;Parent=rna_PVX_300089 CM000455 pviv_synteny_improved CDS 2824410 2824448 . - 0 ID=cds_PVX_300089-5;truncated=1;pseudogene=0;Name=cds_PVX_300089-5;Parent=rna_PVX_300089 CM000448 pviv_synteny_improved gene 174257 178412 . - . ID=PVX_300090;clustalpid=53.09;pseudogene=0;queryCoverage=99.44;AlignmentGaps=9;gene_type=protein;bitscore=1036.52;truncated=0;alignmentLen=901;query=PFI0265c;queryLen=897;improved=1;Name=PVX_300090 CM000448 pviv_synteny_improved mRNA 174257 178412 . - . ID=rna_PVX_300090;truncated=0;pseudogene=0;Name=rna_PVX_300090;Parent=PVX_300090 CM000448 pviv_synteny_improved CDS 178349 178412 . - 0 ID=cds_PVX_300090-1;truncated=0;pseudogene=0;Name=cds_PVX_300090-1;Parent=rna_PVX_300090 CM000448 pviv_synteny_improved CDS 178065 178174 . - 1 ID=cds_PVX_300090-2;truncated=0;pseudogene=0;Name=cds_PVX_300090-2;Parent=rna_PVX_300090 CM000448 pviv_synteny_improved CDS 176516 177473 . - 0 ID=cds_PVX_300090-3;truncated=0;pseudogene=0;Name=cds_PVX_300090-3;Parent=rna_PVX_300090 CM000448 pviv_synteny_improved CDS 176333 176395 . - 1 ID=cds_PVX_300090-4;truncated=0;pseudogene=0;Name=cds_PVX_300090-4;Parent=rna_PVX_300090 CM000448 pviv_synteny_improved CDS 175987 176043 . - 1 ID=cds_PVX_300090-5;truncated=0;pseudogene=0;Name=cds_PVX_300090-5;Parent=rna_PVX_300090 CM000448 pviv_synteny_improved CDS 175028 175807 . - 1 ID=cds_PVX_300090-6;truncated=0;pseudogene=0;Name=cds_PVX_300090-6;Parent=rna_PVX_300090 CM000448 pviv_synteny_improved CDS 174257 174894 . - 1 ID=cds_PVX_300090-7;truncated=0;pseudogene=0;Name=cds_PVX_300090-7;Parent=rna_PVX_300090 CM000443 pviv_synteny_improved gene 583714 598638 . - . ID=PVX_300091;clustalpid=33.09;pseudogene=0;queryCoverage=99.95;AlignmentGaps=134;gene_type=protein;bitscore=2574.69;truncated=0;alignmentLen=5692;query=PF07_0118;queryLen=5561;improved=1;Name=PVX_300091 CM000443 pviv_synteny_improved mRNA 583714 598638 . - . ID=rna_PVX_300091;truncated=0;pseudogene=0;Name=rna_PVX_300091;Parent=PVX_300091 CM000443 pviv_synteny_improved CDS 592872 598638 . - 0 ID=cds_PVX_300091-1;truncated=0;pseudogene=0;Name=cds_PVX_300091-1;Parent=rna_PVX_300091 CM000443 pviv_synteny_improved CDS 589680 592592 . - 1 ID=cds_PVX_300091-2;truncated=0;pseudogene=0;Name=cds_PVX_300091-2;Parent=rna_PVX_300091 CM000443 pviv_synteny_improved CDS 584876 589220 . - 1 ID=cds_PVX_300091-3;truncated=0;pseudogene=0;Name=cds_PVX_300091-3;Parent=rna_PVX_300091 CM000443 pviv_synteny_improved CDS 583714 584800 . - 2 ID=cds_PVX_300091-4;truncated=0;pseudogene=0;Name=cds_PVX_300091-4;Parent=rna_PVX_300091 CM000453 pviv_synteny_improved gene 570102 573644 . + . ID=PVX_082940a;clustalpid=29.37;query=PF13_0221;improved=1;replaced_genes=PVX_082940;gene_type=protein;Name=PVX_082940a CM000453 pviv_synteny_improved mRNA 570102 573644 . + . ID=mrna_PVX_082940a;Name=mrna_PVX_082940a;Parent=PVX_082940a CM000453 pviv_synteny_improved CDS 570102 573644 . + . ID=cds_PVX_082940a-1;Name=cds_PVX_082940a-1;Parent=mrna_PVX_082940a CM000453 pviv_synteny_improved gene 575291 576529 . + . ID=PVX_082940b;clustalpid=37.44;query=PF13_0220;improved=1;replaced_genes=PVX_082940;gene_type=protein;Name=PVX_082940b CM000453 pviv_synteny_improved mRNA 575291 576529 . + . ID=mrna_PVX_082940b;Name=mrna_PVX_082940b;Parent=PVX_082940b CM000453 pviv_synteny_improved CDS 575291 575416 . + . ID=cds_PVX_082940b-1;Name=cds_PVX_082940b-1;Parent=mrna_PVX_082940b CM000453 pviv_synteny_improved CDS 575555 576529 . + . ID=cds_PVX_082940b-2;Name=cds_PVX_082940b-2;Parent=mrna_PVX_082940b CM000450 pviv_synteny_improved gene 143183 143578 . + . ID=PVX_300092;clustalpid=41.67;pseudogene=0;queryCoverage=100.00;AlignmentGaps=0;gene_type=protein;bitscore=132.94;truncated=0;alignmentLen=132;query=PF11_0070;queryLen=132;improved=1;Name=PVX_300092 CM000450 pviv_synteny_improved mRNA 143183 143578 . + . ID=rna_PVX_300092;truncated=0;pseudogene=0;Name=rna_PVX_300092;Parent=PVX_300092 CM000450 pviv_synteny_improved CDS 143183 143578 . + 0 ID=cds_PVX_300092-1;truncated=0;pseudogene=0;Name=cds_PVX_300092-1;Parent=rna_PVX_300092 CM000454 pviv_synteny_improved gene 1586344 1589280 . - . ID=PVX_300093;clustalpid=47.90;pseudogene=0;queryCoverage=99.79;AlignmentGaps=4;gene_type=protein;bitscore=802.20;truncated=0;alignmentLen=949;query=PF14_0113;queryLen=947;improved=1;Name=PVX_300093 CM000454 pviv_synteny_improved mRNA 1586344 1589280 . - . ID=rna_PVX_300093;truncated=0;pseudogene=0;Name=rna_PVX_300093;Parent=PVX_300093 CM000454 pviv_synteny_improved CDS 1589259 1589280 . - 0 ID=cds_PVX_300093-1;truncated=0;pseudogene=0;Name=cds_PVX_300093-1;Parent=rna_PVX_300093 CM000454 pviv_synteny_improved CDS 1587932 1589041 . - 1 ID=cds_PVX_300093-2;truncated=0;pseudogene=0;Name=cds_PVX_300093-2;Parent=rna_PVX_300093 CM000454 pviv_synteny_improved CDS 1587163 1587838 . - 1 ID=cds_PVX_300093-3;truncated=0;pseudogene=0;Name=cds_PVX_300093-3;Parent=rna_PVX_300093 CM000454 pviv_synteny_improved CDS 1586344 1587133 . - 2 ID=cds_PVX_300093-4;truncated=0;pseudogene=0;Name=cds_PVX_300093-4;Parent=rna_PVX_300093 CM000446 pviv_synteny_improved gene 993618 996661 . - . ID=PVX_300094;clustalpid=40.68;pseudogene=0;queryCoverage=99.75;AlignmentGaps=25;gene_type=protein;bitscore=533.94;truncated=1;alignmentLen=830;query=PFD0855c;queryLen=807;improved=1;Name=PVX_300094 CM000446 pviv_synteny_improved mRNA 993618 996661 . - . ID=rna_PVX_300094;truncated=1;pseudogene=0;Name=rna_PVX_300094;Parent=PVX_300094 CM000446 pviv_synteny_improved CDS 996586 996661 . - 0 ID=cds_PVX_300094-1;truncated=1;pseudogene=0;Name=cds_PVX_300094-1;Parent=rna_PVX_300094 CM000446 pviv_synteny_improved CDS 996268 996380 . - 1 ID=cds_PVX_300094-2;truncated=1;pseudogene=0;Name=cds_PVX_300094-2;Parent=rna_PVX_300094 CM000446 pviv_synteny_improved CDS 995531 996006 . - 0 ID=cds_PVX_300094-3;truncated=1;pseudogene=0;Name=cds_PVX_300094-3;Parent=rna_PVX_300094 CM000446 pviv_synteny_improved CDS 993618 995349 . - 2 ID=cds_PVX_300094-4;truncated=1;pseudogene=0;Name=cds_PVX_300094-4;Parent=rna_PVX_300094 CM000452 pviv_synteny_improved gene 1501346 1501522 . - . ID=PVX_300095;clustalpid=60.00;pseudogene=0;queryCoverage=100.00;AlignmentGaps=0;gene_type=protein;bitscore=73.49;truncated=1;alignmentLen=60;query=PFF0640w;queryLen=60;improved=1;Name=PVX_300095 CM000452 pviv_synteny_improved mRNA 1501346 1501522 . - . ID=rna_PVX_300095;truncated=1;pseudogene=0;Name=rna_PVX_300095;Parent=PVX_300095 CM000452 pviv_synteny_improved CDS 1501346 1501522 . - 0 ID=cds_PVX_300095-1;truncated=1;pseudogene=0;Name=cds_PVX_300095-1;Parent=rna_PVX_300095 CM000448 pviv_synteny_improved gene 239481 241997 . - . ID=PVX_098775;clustalpid=39.60;queryCoverage=100.00;AlignmentGaps=14;pseudogene=0;gene_type=protein;bitscore=525.63;truncated=1;alignmentLen=857;query=PFI0325c;queryLen=843;improved=1;replaced_genes=PVX_098775;Name=PVX_098775 CM000448 pviv_synteny_improved mRNA 239481 241997 . - . ID=rna_PVX_098775;truncated=1;pseudogene=0;Name=rna_PVX_098775;Parent=PVX_098775 CM000448 pviv_synteny_improved CDS 240928 241997 . - 0 ID=cds_PVX_098775-1;truncated=1;pseudogene=0;Name=cds_PVX_098775-1;Parent=rna_PVX_098775 CM000448 pviv_synteny_improved CDS 239481 240645 . - 2 ID=cds_PVX_098775-2;truncated=1;pseudogene=0;Name=cds_PVX_098775-2;Parent=rna_PVX_098775 CM000449 pviv_synteny_improved gene 279647 281985 . - . ID=PVX_094480;clustalpid=39.69;query=PF10_0058;improved=1;replaced_genes=PVX_094480%2CPVX_094475;gene_type=protein;Name=PVX_094480 CM000449 pviv_synteny_improved mRNA 279647 281985 . - . ID=mrna_PVX_094480;Name=mrna_PVX_094480;Parent=PVX_094480 CM000449 pviv_synteny_improved CDS 281492 281985 . - . ID=cds_gw_PVX_094480-2;Name=cds_gw_PVX_094480-2;Parent=mrna_PVX_094480 CM000449 pviv_synteny_improved CDS 280042 281348 . - . ID=cds_gw_PVX_094480-3;Name=cds_gw_PVX_094480-3;Parent=mrna_PVX_094480 CM000449 pviv_synteny_improved CDS 279647 279987 . - . ID=cds_gw_PVX_094480-4;Name=cds_gw_PVX_094480-4;Parent=mrna_PVX_094480 CM000450 pviv_synteny_improved gene 514245 516904 . - . ID=PF11_0168_ortholog;clustalpid=32.72;query=PF11_0168;description=hypothetical+protein,+conserved;Note=PF11_0168 (36.6/100.0);gene_type=protein;improved=1;replaced_genes=PVX_091435;Name=PVX_091435b CM000450 pviv_synteny_improved mRNA 514245 516904 . - . ID=rna_PF11_0168_ortholog-1;Name=PF11_0168_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PF11_0168_ortholog,taxon:126793;size=8437;Parent=PF11_0168_ortholog CM000450 pviv_synteny_improved CDS 514245 514435 . - 2 ID=cds_PF11_0168_ortholog-3;Name=cds_PF11_0168_ortholog-3;description=.;size=191;Parent=rna_PF11_0168_ortholog-1 CM000450 pviv_synteny_improved CDS 516826 516904 . - 1 ID=cds_PF11_0168_ortholog-1;Name=cds_PF11_0168_ortholog-1;description=.;size=86;Parent=rna_PF11_0168_ortholog-1 CM000450 pviv_synteny_improved CDS 514599 516611 . - 0 ID=cds_PF11_0168_ortholog-2;Name=cds_PF11_0168_ortholog-2;description=.;size=1183;Parent=rna_PF11_0168_ortholog-1 CM000450 pviv_synteny_improved gene 518310 522681 . - . ID=PF11_0168a_ortholog;clustalpid=36.60;query=PF11_0168a;description=hypothetical+protein,+conserved;Note=PF11_0168a (32.7/100.0);gene_type=protein;improved=1;replaced_genes=PVX_091435;Name=PVX_091435a CM000450 pviv_synteny_improved mRNA 518310 522681 . - . ID=rna_PF11_0168a_ortholog-1;Name=PF11_0168a_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PF11_0168a_ortholog,taxon:126793;size=8437;Parent=PF11_0168a_ortholog CM000450 pviv_synteny_improved CDS 518310 522681 . - 0 ID=cds_PF11_0168a_ortholog-1;Name=cds_PF11_0168a_ortholog-1;description=.;size=4338;Parent=rna_PF11_0168a_ortholog-1 CM000451 pviv_synteny_improved gene 964071 965769 . - . ID=PVX_300096;clustalpid=52.69;pseudogene=0;queryCoverage=99.11;AlignmentGaps=15;gene_type=protein;bitscore=357.84;truncated=1;alignmentLen=350;query=PFE0455w;queryLen=338;improved=1;Name=PVX_300096 CM000451 pviv_synteny_improved mRNA 964071 965769 . - . ID=rna_PVX_300096;truncated=1;pseudogene=0;Name=rna_PVX_300096;Parent=PVX_300096 CM000451 pviv_synteny_improved CDS 965712 965769 . - 0 ID=cds_PVX_300096-1;truncated=1;pseudogene=0;Name=cds_PVX_300096-1;Parent=rna_PVX_300096 CM000451 pviv_synteny_improved CDS 965376 965547 . - 1 ID=cds_PVX_300096-2;truncated=1;pseudogene=0;Name=cds_PVX_300096-2;Parent=rna_PVX_300096 CM000451 pviv_synteny_improved CDS 965088 965250 . - 2 ID=cds_PVX_300096-3;truncated=1;pseudogene=0;Name=cds_PVX_300096-3;Parent=rna_PVX_300096 CM000451 pviv_synteny_improved CDS 964447 964918 . - 0 ID=cds_PVX_300096-4;truncated=1;pseudogene=0;Name=cds_PVX_300096-4;Parent=rna_PVX_300096 CM000451 pviv_synteny_improved CDS 964071 964258 . - 1 ID=cds_PVX_300096-5;truncated=1;pseudogene=0;Name=cds_PVX_300096-5;Parent=rna_PVX_300096 CM000452 pviv_synteny_improved gene 542191 543104 . - . ID=PVX_300097;clustalpid=53.19;pseudogene=0;queryCoverage=99.28;AlignmentGaps=2;gene_type=protein;bitscore=146.47;truncated=1;alignmentLen=140;query=MAL13P1.287;queryLen=139;improved=1;Name=PVX_300097 CM000452 pviv_synteny_improved mRNA 542191 543104 . - . ID=rna_PVX_300097;truncated=1;pseudogene=0;Name=rna_PVX_300097;Parent=PVX_300097 CM000452 pviv_synteny_improved CDS 542992 543104 . - 0 ID=cds_PVX_300097-1;truncated=1;pseudogene=0;Name=cds_PVX_300097-1;Parent=rna_PVX_300097 CM000452 pviv_synteny_improved CDS 542541 542649 . - 2 ID=cds_PVX_300097-2;truncated=1;pseudogene=0;Name=cds_PVX_300097-2;Parent=rna_PVX_300097 CM000452 pviv_synteny_improved CDS 542191 542388 . - 0 ID=cds_PVX_300097-3;truncated=1;pseudogene=0;Name=cds_PVX_300097-3;Parent=rna_PVX_300097 CM000453 pviv_synteny_improved gene 1020972 1022172 . - . ID=PVX_300152;clustalpid=56.83;pseudogene=0;queryCoverage=99.28;AlignmentGaps=0;gene_type=protein;bitscore=86.14;truncated=1;alignmentLen=137;query=PF13_0156a;queryLen=138;improved=1;Name=PVX_300152 CM000453 pviv_synteny_improved mRNA 1020972 1022172 . - . ID=rna_PVX_300152;truncated=1;pseudogene=0;Name=rna_PVX_300152;Parent=PVX_300152 CM000453 pviv_synteny_improved CDS 1022071 1022172 . - 0 ID=cds_PVX_300152-1;truncated=1;pseudogene=0;Name=cds_PVX_300152-1;Parent=rna_PVX_300152 CM000453 pviv_synteny_improved CDS 1021730 1021833 . - 0 ID=cds_PVX_300152-2;truncated=1;pseudogene=0;Name=cds_PVX_300152-2;Parent=rna_PVX_300152 CM000453 pviv_synteny_improved CDS 1021613 1021629 . - 2 ID=cds_PVX_300152-3;truncated=1;pseudogene=0;Name=cds_PVX_300152-3;Parent=rna_PVX_300152 CM000453 pviv_synteny_improved CDS 1021206 1021276 . - 1 ID=cds_PVX_300152-4;truncated=1;pseudogene=0;Name=cds_PVX_300152-4;Parent=rna_PVX_300152 CM000453 pviv_synteny_improved CDS 1020972 1021067 . - 0 ID=cds_PVX_300152-5;truncated=1;pseudogene=0;Name=cds_PVX_300152-5;Parent=rna_PVX_300152 CM000452 pviv_synteny_improved gene 1447085 1449478 . + . ID=PVX_113845a;clustalpid=42.32;query=PFF0685c;improved=1;replaced_genes=PVX_113845;gene_type=protein;Name=PVX_113845a CM000452 pviv_synteny_improved mRNA 1447085 1449478 . + . ID=mrna_PVX_113845a;Name=mrna_PVX_113845a;Parent=PVX_113845a CM000452 pviv_synteny_improved CDS 1447085 1448798 . + . ID=cds_PVX_113845a-1;Name=cds_PVX_113845a-1;Parent=mrna_PVX_113845a CM000452 pviv_synteny_improved CDS 1448880 1449478 . + . ID=cds_PVX_113845a-2;Name=cds_PVX_113845a-2;Parent=mrna_PVX_113845a CM000452 pviv_synteny_improved gene 1450896 1453199 . + . ID=PVX_113845b;clustalpid=30.27;query=PFF0683c;improved=1;replaced_genes=PVX_113845;gene_type=protein;Name=PVX_113845b CM000452 pviv_synteny_improved mRNA 1450896 1453199 . + . ID=mrna_PVX_113845b;Name=mrna_PVX_113845b;Parent=PVX_113845b CM000452 pviv_synteny_improved CDS 1450896 1453199 . + . ID=cds_PVX_113845b-1;Name=cds_PVX_113845b-1;Parent=mrna_PVX_113845b CM000453 pviv_synteny_improved gene 269764 271381 . + . ID=PVX_300098;clustalpid=56.44;pseudogene=0;queryCoverage=100.00;AlignmentGaps=2;gene_type=protein;bitscore=174.72;truncated=1;alignmentLen=203;query=MAL13P1.235;queryLen=201;improved=1;Name=PVX_300098 CM000453 pviv_synteny_improved mRNA 269764 271381 . + . ID=rna_PVX_300098;truncated=1;pseudogene=0;Name=rna_PVX_300098;Parent=PVX_300098 CM000453 pviv_synteny_improved CDS 269764 269901 . + 0 ID=cds_PVX_300098-1;truncated=1;pseudogene=0;Name=cds_PVX_300098-1;Parent=rna_PVX_300098 CM000453 pviv_synteny_improved CDS 270408 270566 . + 0 ID=cds_PVX_300098-2;truncated=1;pseudogene=0;Name=cds_PVX_300098-2;Parent=rna_PVX_300098 CM000453 pviv_synteny_improved CDS 270734 270796 . + 0 ID=cds_PVX_300098-3;truncated=1;pseudogene=0;Name=cds_PVX_300098-3;Parent=rna_PVX_300098 CM000453 pviv_synteny_improved CDS 270975 271154 . + 0 ID=cds_PVX_300098-4;truncated=1;pseudogene=0;Name=cds_PVX_300098-4;Parent=rna_PVX_300098 CM000453 pviv_synteny_improved CDS 271322 271381 . + 0 ID=cds_PVX_300098-5;truncated=1;pseudogene=0;Name=cds_PVX_300098-5;Parent=rna_PVX_300098 CM000451 pviv_synteny_improved gene 85868 92405 . - . ID=PVX_300099;clustalpid=41.01;pseudogene=0;queryCoverage=99.95;AlignmentGaps=40;gene_type=protein;bitscore=1206.02;truncated=1;alignmentLen=1945;query=PFE1485w;queryLen=1906;improved=1;Name=PVX_300099 CM000451 pviv_synteny_improved mRNA 85868 92405 . - . ID=rna_PVX_300099;truncated=1;pseudogene=0;Name=rna_PVX_300099;Parent=PVX_300099 CM000451 pviv_synteny_improved CDS 92178 92405 . - 0 ID=cds_PVX_300099-1;truncated=1;pseudogene=0;Name=cds_PVX_300099-1;Parent=rna_PVX_300099 CM000451 pviv_synteny_improved CDS 87957 91348 . - 0 ID=cds_PVX_300099-2;truncated=1;pseudogene=0;Name=cds_PVX_300099-2;Parent=rna_PVX_300099 CM000451 pviv_synteny_improved CDS 85868 87635 . - 2 ID=cds_PVX_300099-3;truncated=1;pseudogene=0;Name=cds_PVX_300099-3;Parent=rna_PVX_300099 CM000442 pviv_synteny_improved gene 638700 647067 . - . ID=MAL8P1.143_ortholog;query=MAL8P1.143-b;improved=1;replaced_genes=PVX_093565;Name=PVX_093565;gene_type=protein CM000442 pviv_synteny_improved mRNA 638700 647067 . - . ID=rna_MAL8P1.143_ortholog;Name=rna_MAL8P1.143_ortholog;Parent=MAL8P1.143_ortholog CM000442 pviv_synteny_improved CDS 645702 646024 . - 2 ID=cds_MAL8P1.143_ortholog-2;Name=cds_MAL8P1.143_ortholog-2;Parent=rna_MAL8P1.143_ortholog CM000442 pviv_synteny_improved CDS 638700 638770 . - 1 ID=cds_MAL8P1.143_ortholog-6;Name=cds_MAL8P1.143_ortholog-6;Parent=rna_MAL8P1.143_ortholog CM000442 pviv_synteny_improved CDS 641986 642245 . - 2 ID=cds_MAL8P1.143_ortholog-4;Name=cds_MAL8P1.143_ortholog-4;Parent=rna_MAL8P1.143_ortholog CM000442 pviv_synteny_improved CDS 638894 641777 . - 1 ID=cds_MAL8P1.143_ortholog-5;Name=cds_MAL8P1.143_ortholog-5;Parent=rna_MAL8P1.143_ortholog CM000442 pviv_synteny_improved CDS 646304 647067 . - 0 ID=cds_MAL8P1.143_ortholog-1;Name=cds_MAL8P1.143_ortholog-1;Parent=rna_MAL8P1.143_ortholog CM000455 pviv_synteny_improved gene 2893877 2895468 . - . ID=PVX_300100;clustalpid=52.45;pseudogene=0;queryCoverage=97.86;AlignmentGaps=5;gene_type=protein;bitscore=39.67;truncated=1;alignmentLen=142;query=PFL2450c;queryLen=140;improved=1;Name=PVX_300100 CM000455 pviv_synteny_improved mRNA 2893877 2895468 . - . ID=rna_PVX_300100;truncated=1;pseudogene=0;Name=rna_PVX_300100;Parent=PVX_300100 CM000455 pviv_synteny_improved CDS 2895437 2895468 . - 0 ID=cds_PVX_300100-1;truncated=1;pseudogene=0;Name=cds_PVX_300100-1;Parent=rna_PVX_300100 CM000455 pviv_synteny_improved CDS 2894962 2895043 . - 2 ID=cds_PVX_300100-2;truncated=1;pseudogene=0;Name=cds_PVX_300100-2;Parent=rna_PVX_300100 CM000455 pviv_synteny_improved CDS 2894729 2894788 . - 0 ID=cds_PVX_300100-3;truncated=1;pseudogene=0;Name=cds_PVX_300100-3;Parent=rna_PVX_300100 CM000455 pviv_synteny_improved CDS 2894544 2894623 . - 0 ID=cds_PVX_300100-4;truncated=1;pseudogene=0;Name=cds_PVX_300100-4;Parent=rna_PVX_300100 CM000455 pviv_synteny_improved CDS 2894315 2894353 . - 2 ID=cds_PVX_300100-5;truncated=1;pseudogene=0;Name=cds_PVX_300100-5;Parent=rna_PVX_300100 CM000455 pviv_synteny_improved CDS 2894114 2894192 . - 2 ID=cds_PVX_300100-6;truncated=1;pseudogene=0;Name=cds_PVX_300100-6;Parent=rna_PVX_300100 CM000455 pviv_synteny_improved CDS 2893877 2893930 . - 0 ID=cds_PVX_300100-7;truncated=1;pseudogene=0;Name=cds_PVX_300100-7;Parent=rna_PVX_300100 CM000448 pviv_synteny_improved gene 615680 621511 . + . ID=PFI0805w_ortholog;query=PFI0805w;improved=1;pseudogene=0;Name=PVX_300101;gene_type=protein CM000448 pviv_synteny_improved mRNA 615680 621511 . + . ID=rna_PFI0805w_ortholog;pseudogene=0;Name=rna_PFI0805w_ortholog;Parent=PFI0805w_ortholog CM000448 pviv_synteny_improved CDS 615680 621511 . + 0 ID=cds_PFI0805w_ortholog-1;pseudogene=0;Name=cds_PFI0805w_ortholog-1;Parent=rna_PFI0805w_ortholog CM000454 pviv_synteny_improved gene 1007162 1011247 . + . ID=PVX_300102;clustalpid=19.60;pseudogene=0;queryCoverage=100.00;AlignmentGaps=87;gene_type=protein;bitscore=42.28;truncated=1;alignmentLen=1518;query=PF14_0245;queryLen=1431;improved=1;Name=PVX_300102 CM000454 pviv_synteny_improved mRNA 1007162 1011247 . + . ID=rna_PVX_300102;truncated=1;pseudogene=0;Name=rna_PVX_300102;Parent=PVX_300102 CM000454 pviv_synteny_improved CDS 1007162 1011247 . + 0 ID=cds_PVX_300102-1;truncated=1;pseudogene=0;Name=cds_PVX_300102-1;Parent=rna_PVX_300102 CM000455 pviv_synteny_improved gene 739923 740658 . - . ID=PVX_300103;clustalpid=58.65;pseudogene=0;queryCoverage=99.04;AlignmentGaps=0;gene_type=protein;bitscore=59.72;truncated=1;alignmentLen=103;query=PF13_0090a;queryLen=104;improved=1;Name=PVX_300103 CM000455 pviv_synteny_improved mRNA 739923 740658 . - . ID=rna_PVX_300103;truncated=1;pseudogene=0;Name=rna_PVX_300103;Parent=PVX_300103 CM000455 pviv_synteny_improved CDS 740575 740658 . - 0 ID=cds_PVX_300103-1;truncated=1;pseudogene=0;Name=cds_PVX_300103-1;Parent=rna_PVX_300103 CM000455 pviv_synteny_improved CDS 740446 740497 . - 0 ID=cds_PVX_300103-2;truncated=1;pseudogene=0;Name=cds_PVX_300103-2;Parent=rna_PVX_300103 CM000455 pviv_synteny_improved CDS 740281 740342 . - 1 ID=cds_PVX_300103-3;truncated=1;pseudogene=0;Name=cds_PVX_300103-3;Parent=rna_PVX_300103 CM000455 pviv_synteny_improved CDS 740127 740195 . - 0 ID=cds_PVX_300103-4;truncated=1;pseudogene=0;Name=cds_PVX_300103-4;Parent=rna_PVX_300103 CM000455 pviv_synteny_improved CDS 739923 739967 . - 0 ID=cds_PVX_300103-5;truncated=1;pseudogene=0;Name=cds_PVX_300103-5;Parent=rna_PVX_300103 CM000448 pviv_synteny_improved gene 1282167 1283066 . + . ID=PVX_300159;clustalpid=30.37;pseudogene=0;queryCoverage=99.63;AlignmentGaps=4;gene_type=protein;bitscore=101.87;truncated=1;alignmentLen=271;query=PFI1617w;queryLen=268;improved=1;Name=PVX_300159 CM000448 pviv_synteny_improved mRNA 1282167 1283066 . + . ID=rna_PVX_300159;truncated=1;pseudogene=0;Name=rna_PVX_300159;Parent=PVX_300159 CM000448 pviv_synteny_improved CDS 1282167 1282840 . + 0 ID=cds_PVX_300159-1;truncated=1;pseudogene=0;Name=cds_PVX_300159-1;Parent=rna_PVX_300159 CM000448 pviv_synteny_improved CDS 1282976 1283066 . + 2 ID=cds_PVX_300159-2;truncated=1;pseudogene=0;Name=cds_PVX_300159-2;Parent=rna_PVX_300159 CM000443 pviv_synteny_improved gene 242271 242969 . + . ID=PVX_300104;clustalpid=52.63;pseudogene=0;queryCoverage=98.67;AlignmentGaps=2;gene_type=protein;bitscore=155.12;truncated=0;alignmentLen=150;query=PFA0470c;queryLen=150;improved=1;Name=PVX_300104 CM000443 pviv_synteny_improved mRNA 242271 242969 . + . ID=rna_PVX_300104;truncated=0;pseudogene=0;Name=rna_PVX_300104;Parent=PVX_300104 CM000443 pviv_synteny_improved CDS 242271 242415 . + 0 ID=cds_PVX_300104-1;truncated=0;pseudogene=0;Name=cds_PVX_300104-1;Parent=rna_PVX_300104 CM000443 pviv_synteny_improved CDS 242582 242635 . + 1 ID=cds_PVX_300104-2;truncated=0;pseudogene=0;Name=cds_PVX_300104-2;Parent=rna_PVX_300104 CM000443 pviv_synteny_improved CDS 242737 242969 . + 1 ID=cds_PVX_300104-3;truncated=0;pseudogene=0;Name=cds_PVX_300104-3;Parent=rna_PVX_300104 CM000447 pviv_synteny_improved gene 575467 576791 . - . ID=PF10_0280_ortholog;query=PF10_0280;improved=1;pseudogene=0;Name=PVX_300105;gene_type=protein CM000447 pviv_synteny_improved mRNA 575467 576791 . - . ID=rna_PF10_0280_ortholog;pseudogene=0;Name=rna_PF10_0280_ortholog;Parent=PF10_0280_ortholog CM000447 pviv_synteny_improved CDS 575467 575545 . - . ID=cds_PF10_0280_ortholog-4;pseudogene=0;Name=cds_PF10_0280_ortholog-4;Parent=rna_PF10_0280_ortholog CM000447 pviv_synteny_improved CDS 576060 576149 . - . ID=cds_PF10_0280_ortholog-2;pseudogene=0;Name=cds_PF10_0280_ortholog-2;Parent=rna_PF10_0280_ortholog CM000447 pviv_synteny_improved CDS 576670 576791 . - . ID=cds_PF10_0280_ortholog-1;pseudogene=0;Name=cds_PF10_0280_ortholog-1;Parent=rna_PF10_0280_ortholog CM000447 pviv_synteny_improved CDS 575709 575858 . - . ID=cds_PF10_0280_ortholog-3;pseudogene=0;Name=cds_PF10_0280_ortholog-3;Parent=rna_PF10_0280_ortholog CM000453 pviv_synteny_improved gene 723923 724713 . - . ID=PVX_300106;clustalpid=56.17;pseudogene=0;queryCoverage=100.00;AlignmentGaps=7;gene_type=protein;bitscore=195.64;truncated=1;alignmentLen=162;query=PF13_0202;queryLen=155;improved=1;Name=PVX_300106 CM000453 pviv_synteny_improved mRNA 723923 724713 . - . ID=rna_PVX_300106;truncated=1;pseudogene=0;Name=rna_PVX_300106;Parent=PVX_300106 CM000453 pviv_synteny_improved CDS 724414 724713 . - 0 ID=cds_PVX_300106-1;truncated=1;pseudogene=0;Name=cds_PVX_300106-1;Parent=rna_PVX_300106 CM000453 pviv_synteny_improved CDS 723923 724108 . - 0 ID=cds_PVX_300106-2;truncated=1;pseudogene=0;Name=cds_PVX_300106-2;Parent=rna_PVX_300106 CM000450 pviv_synteny_improved gene 188161 191514 . + . ID=PVX_091032;clustalpid=52.03;query=PF11_0084;improved=1;replaced_genes=PVX_091032%2CPVX_091035;gene_type=protein;Name=PVX_091032 CM000450 pviv_synteny_improved mRNA 188161 191514 . + . ID=mrna_PVX_091032;Name=mrna_PVX_091032;Parent=PVX_091032 CM000450 pviv_synteny_improved CDS 188161 188251 . + . ID=cds_gw_PVX_091032-3;Name=cds_gw_PVX_091032-3;Parent=mrna_PVX_091032 CM000450 pviv_synteny_improved CDS 188486 188815 . + . ID=cds_gw_PVX_091032-4;Name=cds_gw_PVX_091032-4;Parent=mrna_PVX_091032 CM000450 pviv_synteny_improved CDS 189170 189268 . + . ID=cds_gw_PVX_091032-5;Name=cds_gw_PVX_091032-5;Parent=mrna_PVX_091032 CM000450 pviv_synteny_improved CDS 189483 189538 . + . ID=cds_gw_PVX_091032-6;Name=cds_gw_PVX_091032-6;Parent=mrna_PVX_091032 CM000450 pviv_synteny_improved CDS 189698 189838 . + . ID=cds_gw_PVX_091032-7;Name=cds_gw_PVX_091032-7;Parent=mrna_PVX_091032 CM000450 pviv_synteny_improved CDS 189990 190052 . + . ID=cds_down_PVX_091032-8;Name=cds_down_PVX_091032-8;Parent=mrna_PVX_091032 CM000450 pviv_synteny_improved CDS 190227 190303 . + . ID=cds_down_PVX_091032-9;Name=cds_down_PVX_091032-9;Parent=mrna_PVX_091032 CM000450 pviv_synteny_improved CDS 190476 191514 . + . ID=cds_down_PVX_091032-10;Name=cds_down_PVX_091032-10;Parent=mrna_PVX_091032 CM000449 pviv_synteny_improved gene 1402363 1407276 . - . ID=PVX_119525;clustalpid=29.52;queryCoverage=100.00;AlignmentGaps=42;pseudogene=0;gene_type=protein;bitscore=697.42;truncated=0;alignmentLen=1753;query=PFC0345w;queryLen=1711;improved=1;replaced_genes=PVX_119525;Name=PVX_119525 CM000449 pviv_synteny_improved mRNA 1402363 1407276 . - . ID=rna_PVX_119525;truncated=0;pseudogene=0;Name=rna_PVX_119525;Parent=PVX_119525 CM000449 pviv_synteny_improved CDS 1403523 1407276 . - 0 ID=cds_PVX_119525-1;truncated=0;pseudogene=0;Name=cds_PVX_119525-1;Parent=rna_PVX_119525 CM000449 pviv_synteny_improved CDS 1402363 1403345 . - 1 ID=cds_PVX_119525-2;truncated=0;pseudogene=0;Name=cds_PVX_119525-2;Parent=rna_PVX_119525 CM000449 pviv_synteny_improved gene 1117678 1120726 . - . ID=PVX_300107;clustalpid=20.78;pseudogene=0;queryCoverage=99.59;AlignmentGaps=2;gene_type=protein;bitscore=-20.86;truncated=1;alignmentLen=485;query=PFC0680w;queryLen=485;improved=1;Name=PVX_300107 CM000449 pviv_synteny_improved mRNA 1117678 1120726 . - . ID=rna_PVX_300107;truncated=1;pseudogene=0;Name=rna_PVX_300107;Parent=PVX_300107 CM000449 pviv_synteny_improved CDS 1120330 1120726 . - 0 ID=cds_PVX_300107-1;truncated=1;pseudogene=0;Name=cds_PVX_300107-1;Parent=rna_PVX_300107 CM000449 pviv_synteny_improved CDS 1119939 1120178 . - 1 ID=cds_PVX_300107-2;truncated=1;pseudogene=0;Name=cds_PVX_300107-2;Parent=rna_PVX_300107 CM000449 pviv_synteny_improved CDS 1118723 1119041 . - 1 ID=cds_PVX_300107-3;truncated=1;pseudogene=0;Name=cds_PVX_300107-3;Parent=rna_PVX_300107 CM000449 pviv_synteny_improved CDS 1117678 1118065 . - 2 ID=cds_PVX_300107-4;truncated=1;pseudogene=0;Name=cds_PVX_300107-4;Parent=rna_PVX_300107 CM000449 pviv_synteny_improved gene 969378 970659 . - . ID=PVX_300108;clustalpid=31.67;pseudogene=1;queryCoverage=99.16;AlignmentGaps=2;gene_type=protein;bitscore=16.11;truncated=1;alignmentLen=120;query=PFC0830w;queryLen=119;improved=1;Name=PVX_300108 CM000449 pviv_synteny_improved mRNA 969378 970659 . - . ID=rna_PVX_300108;truncated=1;pseudogene=1;Name=rna_PVX_300108;Parent=PVX_300108 CM000449 pviv_synteny_improved CDS 970503 970659 . - 0 ID=cds_PVX_300108-1;truncated=1;pseudogene=1;Name=cds_PVX_300108-1;Parent=rna_PVX_300108 CM000449 pviv_synteny_improved CDS 969378 969573 . - 1 ID=cds_PVX_300108-2;truncated=1;pseudogene=1;Name=cds_PVX_300108-2;Parent=rna_PVX_300108 CM000454 pviv_synteny_improved gene 1089057 1094062 . - . ID=PF14_0225_ortholog;query=PF14_0225;improved=1;replaced_genes=PVX_085310;Name=PVX_085310;description=hypothetical+protein,+conserved;gene_type=protein CM000454 pviv_synteny_improved mRNA 1089057 1094062 . - . ID=rna_PF14_0225_ortholog-1;Name=PF14_0225_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PF14_0225_ortholog,NCBI_gi:148805601,NCBI_gi:156102068,taxon:126793;size=2788;Parent=PF14_0225_ortholog CM000454 pviv_synteny_improved CDS 1089057 1093307 . - 0 ID=cds_PF14_0225_ortholog-4;Name=cds_PF14_0225_ortholog-4;description=.;size=1725;Parent=rna_PF14_0225_ortholog-1 CM000454 pviv_synteny_improved CDS 1094015 1094062 . - 0 ID=cds_PF14_0225_ortholog-1;Name=cds_PF14_0225_ortholog-1;description=.;size=48;Parent=rna_PF14_0225_ortholog-1 CM000454 pviv_synteny_improved CDS 1093769 1093811 . - 0 ID=cds_PF14_0225_ortholog-2;Name=cds_PF14_0225_ortholog-2;description=.;size=43;Parent=rna_PF14_0225_ortholog-1 CM000454 pviv_synteny_improved CDS 1093494 1093573 . - 2 ID=cds_PF14_0225_ortholog-3;Name=cds_PF14_0225_ortholog-3;description=.;size=80;Parent=rna_PF14_0225_ortholog-1 CM000446 pviv_synteny_improved gene 806052 808448 . - . ID=PFD0775c_ortholog;query=PFD0775c;improved=1;replaced_genes=PVX_089755;Name=PVX_089755;gene_type=protein CM000446 pviv_synteny_improved mRNA 806052 808448 . - . ID=rna_PFD0775c_ortholog;Name=rna_PFD0775c_ortholog;Parent=PFD0775c_ortholog CM000446 pviv_synteny_improved CDS 806052 806104 . - 1 ID=cds_PFD0775c_ortholog-6;Name=cds_PFD0775c_ortholog-6;Parent=rna_PFD0775c_ortholog CM000446 pviv_synteny_improved CDS 807623 808448 . - 0 ID=cds_PFD0775c_ortholog-1;Name=cds_PFD0775c_ortholog-1;Parent=rna_PFD0775c_ortholog CM000446 pviv_synteny_improved CDS 806731 806906 . - 1 ID=cds_PFD0775c_ortholog-3;Name=cds_PFD0775c_ortholog-3;Parent=rna_PFD0775c_ortholog CM000446 pviv_synteny_improved CDS 806297 806360 . - 0 ID=cds_PFD0775c_ortholog-5;Name=cds_PFD0775c_ortholog-5;Parent=rna_PFD0775c_ortholog CM000446 pviv_synteny_improved CDS 807228 807491 . - 1 ID=cds_PFD0775c_ortholog-2;Name=cds_PFD0775c_ortholog-2;Parent=rna_PFD0775c_ortholog CM000446 pviv_synteny_improved CDS 806492 806581 . - 0 ID=cds_PFD0775c_ortholog-4;Name=cds_PFD0775c_ortholog-4;Parent=rna_PFD0775c_ortholog CM000451 pviv_synteny_improved gene 1068265 1079312 . - . ID=PFE0320w_ortholog;clustalpid=15.08;query=PFE0320w;description=hypothetical+protein;Note=PFE0320w (15.1/100.0);gene_type=protein;improved=1;replaced_genes=PVX_097880,PVX_097885;Name=PVX_097880 CM000451 pviv_synteny_improved mRNA 1068265 1079312 . - . ID=rna_PFE0320w_ortholog-1;Name=PFE0320w_ortholog-1;description=hypothetical+protein;Parent=PFE0320w_ortholog CM000451 pviv_synteny_improved CDS 1068265 1071299 . - 2 ID=cds_PFE0320w_ortholog-3;Name=cds_PFE0320w_ortholog-3;Parent=rna_PFE0320w_ortholog-1 CM000451 pviv_synteny_improved CDS 1071462 1075799 . - 2 ID=cds_PFE0320w_ortholog-2;Name=cds_PFE0320w_ortholog-2;Parent=rna_PFE0320w_ortholog-1 CM000451 pviv_synteny_improved CDS 1076021 1079312 . - 0 ID=cds_PFE0320w_ortholog-1;Name=cds_PFE0320w_ortholog-1;Parent=rna_PFE0320w_ortholog-1 CM000450 pviv_synteny_improved gene 948811 952542 . - . ID=PVX_300109;clustalpid=33.26;pseudogene=0;queryCoverage=99.92;AlignmentGaps=39;gene_type=protein;bitscore=563.31;truncated=1;alignmentLen=1354;query=PF11_0271;queryLen=1316;improved=1;Name=PVX_300109 CM000450 pviv_synteny_improved mRNA 948811 952542 . - . ID=rna_PVX_300109;truncated=1;pseudogene=0;Name=rna_PVX_300109;Parent=PVX_300109 CM000450 pviv_synteny_improved CDS 952155 952542 . - 0 ID=cds_PVX_300109-1;truncated=1;pseudogene=0;Name=cds_PVX_300109-1;Parent=rna_PVX_300109 CM000450 pviv_synteny_improved CDS 949333 952064 . - 1 ID=cds_PVX_300109-2;truncated=1;pseudogene=0;Name=cds_PVX_300109-2;Parent=rna_PVX_300109 CM000450 pviv_synteny_improved CDS 949042 949221 . - 0 ID=cds_PVX_300109-3;truncated=1;pseudogene=0;Name=cds_PVX_300109-3;Parent=rna_PVX_300109 CM000450 pviv_synteny_improved CDS 948811 948894 . - 0 ID=cds_PVX_300109-4;truncated=1;pseudogene=0;Name=cds_PVX_300109-4;Parent=rna_PVX_300109 CM000450 pviv_synteny_improved gene 1805850 1808383 . + . ID=PF11_0470_ortholog;query=PF11_0470;improved=1;pseudogene=0;Name=PVX_300110;gene_type=protein CM000450 pviv_synteny_improved mRNA 1805850 1808383 . + . ID=rna_PF11_0470_ortholog;pseudogene=0;Name=rna_PF11_0470_ortholog;Parent=PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1806601 1806696 . + 0 ID=cds_PF11_0470_ortholog-3;pseudogene=0;Name=cds_PF11_0470_ortholog-3;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1806001 1806422 . + 1 ID=cds_PF11_0470_ortholog-2;pseudogene=0;Name=cds_PF11_0470_ortholog-2;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1808039 1808100 . + 0 ID=cds_PF11_0470_ortholog-10;pseudogene=0;Name=cds_PF11_0470_ortholog-10;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1806843 1806908 . + 0 ID=cds_PF11_0470_ortholog-4;pseudogene=0;Name=cds_PF11_0470_ortholog-4;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1805850 1805871 . + 0 ID=cds_PF11_0470_ortholog-1;pseudogene=0;Name=cds_PF11_0470_ortholog-1;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1807874 1807902 . + 1 ID=cds_PF11_0470_ortholog-9;pseudogene=0;Name=cds_PF11_0470_ortholog-9;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1806999 1807078 . + 0 ID=cds_PF11_0470_ortholog-5;pseudogene=0;Name=cds_PF11_0470_ortholog-5;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1807402 1807444 . + 1 ID=cds_PF11_0470_ortholog-7;pseudogene=0;Name=cds_PF11_0470_ortholog-7;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1807244 1807284 . + 2 ID=cds_PF11_0470_ortholog-6;pseudogene=0;Name=cds_PF11_0470_ortholog-6;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1808320 1808383 . + 2 ID=cds_PF11_0470_ortholog-11;pseudogene=0;Name=cds_PF11_0470_ortholog-11;Parent=rna_PF11_0470_ortholog CM000450 pviv_synteny_improved CDS 1807630 1807712 . + 2 ID=cds_PF11_0470_ortholog-8;pseudogene=0;Name=cds_PF11_0470_ortholog-8;Parent=rna_PF11_0470_ortholog CM000455 pviv_synteny_improved gene 830213 832081 . + . ID=PVX_300111;clustalpid=59.21;pseudogene=0;queryCoverage=99.12;AlignmentGaps=0;gene_type=protein;bitscore=179.23;truncated=0;alignmentLen=226;query=MAL13P1.97;queryLen=228;improved=1;Name=PVX_300111 CM000455 pviv_synteny_improved mRNA 830213 832081 . + . ID=rna_PVX_300111;truncated=0;pseudogene=0;Name=rna_PVX_300111;Parent=PVX_300111 CM000455 pviv_synteny_improved CDS 830213 830254 . + 0 ID=cds_PVX_300111-1;truncated=0;pseudogene=0;Name=cds_PVX_300111-1;Parent=rna_PVX_300111 CM000455 pviv_synteny_improved CDS 830471 830536 . + 0 ID=cds_PVX_300111-2;truncated=0;pseudogene=0;Name=cds_PVX_300111-2;Parent=rna_PVX_300111 CM000455 pviv_synteny_improved CDS 830654 830800 . + 0 ID=cds_PVX_300111-3;truncated=0;pseudogene=0;Name=cds_PVX_300111-3;Parent=rna_PVX_300111 CM000455 pviv_synteny_improved CDS 830938 831051 . + 0 ID=cds_PVX_300111-4;truncated=0;pseudogene=0;Name=cds_PVX_300111-4;Parent=rna_PVX_300111 CM000455 pviv_synteny_improved CDS 831217 831314 . + 0 ID=cds_PVX_300111-5;truncated=0;pseudogene=0;Name=cds_PVX_300111-5;Parent=rna_PVX_300111 CM000455 pviv_synteny_improved CDS 831451 831515 . + 2 ID=cds_PVX_300111-6;truncated=0;pseudogene=0;Name=cds_PVX_300111-6;Parent=rna_PVX_300111 CM000455 pviv_synteny_improved CDS 831704 831810 . + 1 ID=cds_PVX_300111-7;truncated=0;pseudogene=0;Name=cds_PVX_300111-7;Parent=rna_PVX_300111 CM000455 pviv_synteny_improved CDS 832037 832081 . + 0 ID=cds_PVX_300111-8;truncated=0;pseudogene=0;Name=cds_PVX_300111-8;Parent=rna_PVX_300111 CM000444 pviv_synteny_improved gene 438561 439696 . + . ID=MAL7P1.78_ortholog;clustalpid=59.90;query=MAL7P1.78;description=hypothetical+protein,+conserved;gene_type=protein;improved=1;replaced_genes=PVX_000605;Name=PVX_000605a CM000444 pviv_synteny_improved mRNA 438561 439696 . + . ID=rna_MAL7P1.78_ortholog-1;Name=MAL7P1.78_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PVX_000605,taxon:126793;Parent=MAL7P1.78_ortholog CM000444 pviv_synteny_improved CDS 438878 438967 . + 2 ID=cds_MAL7P1.78_ortholog-2;Name=cds_MAL7P1.78_ortholog-2;Parent=rna_MAL7P1.78_ortholog-1 CM000444 pviv_synteny_improved CDS 439430 439501 . + 0 ID=cds_MAL7P1.78_ortholog-4;Name=cds_MAL7P1.78_ortholog-4;Parent=rna_MAL7P1.78_ortholog-1 CM000444 pviv_synteny_improved CDS 439149 439306 . + 2 ID=cds_MAL7P1.78_ortholog-3;Name=cds_MAL7P1.78_ortholog-3;Parent=rna_MAL7P1.78_ortholog-1 CM000444 pviv_synteny_improved CDS 439646 439696 . + 0 ID=cds_MAL7P1.78_ortholog-5;Name=cds_MAL7P1.78_ortholog-5;Parent=rna_MAL7P1.78_ortholog-1 CM000444 pviv_synteny_improved CDS 438561 438771 . + 0 ID=cds_MAL7P1.78_ortholog-1;Name=cds_MAL7P1.78_ortholog-1;Parent=rna_MAL7P1.78_ortholog-1 CM000444 pviv_synteny_improved gene 439891 442542 . + . ID=MAL7P1.79_ortholog;clustalpid=11.13;query=MAL7P1.79;description=hypothetical+protein,+conserved;gene_type=protein;improved=1;replaced_genes=PVX_000605;Name=PVX_000605b CM000444 pviv_synteny_improved mRNA 439891 442542 . + . ID=rna_MAL7P1.79_ortholog-1;Name=MAL7P1.79_ortholog-1;description=hypothetical+protein,+conserved;Dbxref=ApiDB_PlasmoDB:PVX_000605,taxon:126793;Parent=MAL7P1.79_ortholog CM000444 pviv_synteny_improved CDS 441439 441666 . + 0 ID=cds_MAL7P1.79_ortholog-10;Name=cds_MAL7P1.79_ortholog-10;Parent=rna_MAL7P1.79_ortholog-1 CM000444 pviv_synteny_improved CDS 441211 441250 . + 1 ID=cds_MAL7P1.79_ortholog-9;Name=cds_MAL7P1.79_ortholog-9;Parent=rna_MAL7P1.79_ortholog-1 CM000444 pviv_synteny_improved CDS 442372 442542 . + 0 ID=cds_MAL7P1.79_ortholog-13;Name=cds_MAL7P1.79_ortholog-13;Parent=rna_MAL7P1.79_ortholog-1 CM000444 pviv_synteny_improved CDS 441789 441940 . + 0 ID=cds_MAL7P1.79_ortholog-11;Name=cds_MAL7P1.79_ortholog-11;Parent=rna_MAL7P1.79_ortholog-1 CM000444 pviv_synteny_improved CDS 442099 442198 . + 1 ID=cds_MAL7P1.79_ortholog-12;Name=cds_MAL7P1.79_ortholog-12;Parent=rna_MAL7P1.79_ortholog-1 CM000444 pviv_synteny_improved CDS 440840 440989 . + 1 ID=cds_MAL7P1.79_ortholog-8;Name=cds_MAL7P1.79_ortholog-8;Parent=rna_MAL7P1.79_ortholog-1 CM000444 pviv_synteny_improved CDS 440458 440716 . + 2 ID=cds_MAL7P1.79_ortholog-7;Name=cds_MAL7P1.79_ortholog-7;Parent=rna_MAL7P1.79_ortholog-1 CM000444 pviv_synteny_improved CDS 439891 440281 . + 0 ID=cds_MAL7P1.79_ortholog-6;Name=cds_MAL7P1.79_ortholog-6;Parent=rna_MAL7P1.79_ortholog-1 CM000444 pviv_synteny_improved CDS 439891 439917 . + 0 ID=cds_MAL7P1.79_ortholog-6;Name=cds_MAL7P1.79_ortholog-6;Parent=cds_MAL7P1.79_ortholog-6 CM000444 pviv_synteny_improved CDS 440061 440281 . + 1 ID=cds_MAL7P1.79_ortholog-6;Name=cds_MAL7P1.79_ortholog-6;Parent=cds_MAL7P1.79_ortholog-6 CM000452 pviv_synteny_improved gene 1036528 1038062 . + . ID=PVX_114345b;clustalpid=35.27;query=PFF1190c;improved=1;replaced_genes=PVX_114345;gene_type=protein;Name=PVX_114345b CM000452 pviv_synteny_improved mRNA 1036528 1038062 . + . ID=mrna_PVX_114345b;Name=mrna_PVX_114345b;Parent=PVX_114345b CM000452 pviv_synteny_improved CDS 1036528 1036905 . + . ID=cds_PVX_114345b-1;Name=cds_PVX_114345b-1;Parent=mrna_PVX_114345b CM000452 pviv_synteny_improved CDS 1037432 1037436 . + . ID=cds_PVX_114345b-2;Name=cds_PVX_114345b-2;Parent=mrna_PVX_114345b CM000452 pviv_synteny_improved CDS 1037583 1037597 . + . ID=cds_PVX_114345b-3;Name=cds_PVX_114345b-3;Parent=mrna_PVX_114345b CM000452 pviv_synteny_improved CDS 1037717 1037779 . + . ID=cds_PVX_114345b-4;Name=cds_PVX_114345b-4;Parent=mrna_PVX_114345b CM000452 pviv_synteny_improved CDS 1038026 1038062 . + . ID=cds_PVX_114345b-5;Name=cds_PVX_114345b-5;Parent=mrna_PVX_114345b CM000452 pviv_synteny_improved gene 1030115 1035654 . + . ID=PVX_114345a;clustalpid=22.17;query=PFF1195c;improved=1;replaced_genes=PVX_114345;gene_type=protein;Name=PVX_114345a CM000452 pviv_synteny_improved mRNA 1030115 1035654 . + . ID=mrna_PVX_114345a;Name=mrna_PVX_114345a;Parent=PVX_114345a CM000452 pviv_synteny_improved CDS 1030115 1030184 . + . ID=cds_PVX_114345a-1;Name=cds_PVX_114345a-1;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1030440 1030469 . + . ID=cds_PVX_114345a-2;Name=cds_PVX_114345a-2;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1030747 1030776 . + . ID=cds_PVX_114345a-3;Name=cds_PVX_114345a-3;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1030928 1030957 . + . ID=cds_PVX_114345a-4;Name=cds_PVX_114345a-4;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1031110 1031130 . + . ID=cds_PVX_114345a-5;Name=cds_PVX_114345a-5;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1031270 1031296 . + . ID=cds_PVX_114345a-6;Name=cds_PVX_114345a-6;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1031532 1031558 . + . ID=cds_PVX_114345a-7;Name=cds_PVX_114345a-7;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1031702 1031728 . + . ID=cds_PVX_114345a-8;Name=cds_PVX_114345a-8;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1031903 1031941 . + . ID=cds_PVX_114345a-9;Name=cds_PVX_114345a-9;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1032036 1032062 . + . ID=cds_PVX_114345a-10;Name=cds_PVX_114345a-10;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1032190 1032225 . + . ID=cds_PVX_114345a-11;Name=cds_PVX_114345a-11;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1032350 1032388 . + . ID=cds_PVX_114345a-12;Name=cds_PVX_114345a-12;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1032496 1032534 . + . ID=cds_PVX_114345a-13;Name=cds_PVX_114345a-13;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1032823 1032861 . + . ID=cds_PVX_114345a-14;Name=cds_PVX_114345a-14;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1032993 1033040 . + . ID=cds_PVX_114345a-15;Name=cds_PVX_114345a-15;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1033246 1033388 . + . ID=cds_PVX_114345a-16;Name=cds_PVX_114345a-16;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1033516 1033723 . + . ID=cds_PVX_114345a-17;Name=cds_PVX_114345a-17;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1033862 1033903 . + . ID=cds_PVX_114345a-18;Name=cds_PVX_114345a-18;Parent=mrna_PVX_114345a CM000452 pviv_synteny_improved CDS 1034135 1035654 . + . ID=cds_PVX_114345a-19;Name=cds_PVX_114345a-19;Parent=mrna_PVX_114345a CM000450 pviv_synteny_improved gene 1236980 1239835 . + . ID=PF11_0347_ortholog;clustalpid=36.44;query=PF11_0347;description=hypothetical+protein,+conserved;gene_type=protein;improved=1;replaced_genes=PVX_092290,PVX_092295;Name=PVX_092290 CM000450 pviv_synteny_improved mRNA 1236980 1239835 . + . ID=rna_PF11_0347_ortholog-1;description=hypothetical+protein,+conserved;size=2230;ontology_term=GO:0003676;Dbxref=ApiDB_PlasmoDB:PF11_0347_ortholog,NCBI_gi:148804324,NCBI_gi:156098869,taxon:126793;Name=PF11_0347_ortholog-1;Parent=PF11_0347_ortholog CM000450 pviv_synteny_improved CDS 1237423 1237854 . + 0 ID=cds_PF11_0347_ortholog-1;Name=cds_PF11_0347_ortholog-1;description=.;size=875;Parent=rna_PF11_0347_ortholog-1 CM000450 pviv_synteny_improved CDS 1238026 1239835 . + 0 ID=cds_PF11_0347_ortholog-2;Name=cds_PF11_0347_ortholog-2;description=.;size=1155;Parent=rna_PF11_0347_ortholog-1 CM000447 pviv_synteny_improved gene 486424 492418 . - . ID=PF10_0254_ortholog;query=PF10_0254;improved=1;replaced_genes=PVX_111415;Name=PVX_111415;description=hypothetical+protein;gene_type=protein;size=2448 CM000447 pviv_synteny_improved mRNA 486424 492418 . - . ID=rna_PF10_0254_ortholog-1;description=hypothetical+protein;size=2448;ontology_term=GO:0016740;Dbxref=ApiDB_PlasmoDB:PF10_0254_ortholog,NCBI_gi:148801079,NCBI_gi:156082031,taxon:126793;Name=PF10_0254_ortholog-1;Parent=PF10_0254_ortholog CM000447 pviv_synteny_improved CDS 488921 489015 . - . ID=cds_PF10_0254_ortholog-5;Name=cds_PF10_0254_ortholog-5;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 486980 487051 . - . ID=cds_PF10_0254_ortholog-9;Name=cds_PF10_0254_ortholog-9;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 490055 492418 . - . ID=cds_PF10_0254_ortholog-1;Name=cds_PF10_0254_ortholog-1;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 486424 486456 . - . ID=cds_PF10_0254_ortholog-11;Name=cds_PF10_0254_ortholog-11;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 486719 486844 . - . ID=cds_PF10_0254_ortholog-10;Name=cds_PF10_0254_ortholog-10;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 489186 489251 . - . ID=cds_PF10_0254_ortholog-4;Name=cds_PF10_0254_ortholog-4;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 489578 489949 . - . ID=cds_PF10_0254_ortholog-2;Name=cds_PF10_0254_ortholog-2;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 489348 489443 . - . ID=cds_PF10_0254_ortholog-3;Name=cds_PF10_0254_ortholog-3;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 487452 487760 . - . ID=cds_PF10_0254_ortholog-8;Name=cds_PF10_0254_ortholog-8;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 488534 488682 . - . ID=cds_PF10_0254_ortholog-6;Name=cds_PF10_0254_ortholog-6;Parent=rna_PF10_0254_ortholog-1 CM000447 pviv_synteny_improved CDS 487827 488065 . - . ID=cds_PF10_0254_ortholog-7;Name=cds_PF10_0254_ortholog-7;Parent=rna_PF10_0254_ortholog-1 CM000444 pviv_synteny_improved gene 569013 569981 . + . ID=PVX_300112;clustalpid=57.26;pseudogene=0;queryCoverage=100.00;AlignmentGaps=0;gene_type=protein;bitscore=302.76;truncated=1;alignmentLen=234;query=MAL7P1.97;queryLen=234;improved=1;Name=PVX_300112 CM000444 pviv_synteny_improved mRNA 569013 569981 . + . ID=rna_PVX_300112;truncated=1;pseudogene=0;Name=rna_PVX_300112;Parent=PVX_300112 CM000444 pviv_synteny_improved CDS 569013 569429 . + 0 ID=cds_PVX_300112-1;truncated=1;pseudogene=0;Name=cds_PVX_300112-1;Parent=rna_PVX_300112 CM000444 pviv_synteny_improved CDS 569697 569981 . + 0 ID=cds_PVX_300112-2;truncated=1;pseudogene=0;Name=cds_PVX_300112-2;Parent=rna_PVX_300112 CM000448 pviv_synteny_improved gene 1279284 1281896 . + . ID=PFI1615w_ortholog;query=PFI1615w;improved=1;pseudogene=0;Name=PVX_300113;gene_type=protein CM000448 pviv_synteny_improved mRNA 1279284 1281896 . + . ID=rna_PFI1615w_ortholog;pseudogene=0;Name=rna_PFI1615w_ortholog;Parent=PFI1615w_ortholog CM000448 pviv_synteny_improved CDS 1279284 1281896 . + 0 ID=cds_PFI1615w_ortholog-1;pseudogene=0;Name=cds_PFI1615w_ortholog-1;Parent=rna_PFI1615w_ortholog CM000452 pviv_synteny_improved gene 420690 422985 . + . ID=MAL13P1.302_ortholog;clustalpid=66.67;query=MAL13P1.302;improved=1;replaced_genes=PVX_114995;Name=PVX_114995a;gene_type=protein CM000452 pviv_synteny_improved mRNA 420690 422985 . + . ID=mRNA_MAL13P1.302_ortholog;Parent=MAL13P1.302_ortholog CM000452 pviv_synteny_improved CDS 420848 421075 . + . ID=MAL13P1.302_ortholog-E2;Parent=mRNA_MAL13P1.302_ortholog CM000452 pviv_synteny_improved CDS 420690 420727 . + . ID=MAL13P1.302_ortholog-E1;Parent=mRNA_MAL13P1.302_ortholog CM000452 pviv_synteny_improved CDS 421587 422681 . + . ID=MAL13P1.302_ortholog-E4;Parent=mRNA_MAL13P1.302_ortholog CM000452 pviv_synteny_improved CDS 421199 421314 . + . ID=MAL13P1.302_ortholog-E3;Parent=mRNA_MAL13P1.302_ortholog CM000452 pviv_synteny_improved CDS 422840 422985 . + . ID=MAL13P1.302_ortholog-E5;Parent=mRNA_MAL13P1.302_ortholog CM000452 pviv_synteny_improved gene 423999 425528 . + . ID=PF13_0321_ortholog;clustalpid=15.86;query=PF13_0321;improved=1;replaced_genes=PVX_114995;Name=PVX_114995b;gene_type=protein CM000452 pviv_synteny_improved mRNA 423999 425528 . + . ID=rna_PF13_0321_ortholog;Parent=PF13_0321_ortholog CM000452 pviv_synteny_improved CDS 423999 425528 . + 0 ID=cds_PF13_0321_ortholog-1;Parent=rna_PF13_0321_ortholog CM000454 pviv_synteny_improved gene 1700774 1704664 . - . ID=PF14_0093_ortholog;query=PF14_0093;improved=1;pseudogene=0;Name=PVX_300114;gene_type=protein CM000454 pviv_synteny_improved mRNA 1700774 1704664 . - . ID=rna_PF14_0093_ortholog;pseudogene=0;Name=rna_PF14_0093_ortholog;Parent=PF14_0093_ortholog CM000454 pviv_synteny_improved CDS 1700774 1704664 . - 0 ID=cds_PF14_0093_ortholog;pseudogene=0;Name=cds_PF14_0093_ortholog;Parent=rna_PF14_0093_ortholog CM000454 pviv_synteny_improved gene 688096 694830 . - . ID=PF14_0320_ortholog;query=PF14_0320;improved=1;pseudogene=0;Name=PVX_300115;gene_type=protein CM000454 pviv_synteny_improved mRNA 688096 694830 . - . ID=rna_PF14_0320_ortholog;pseudogene=0;Name=rna_PF14_0320_ortholog;Parent=PF14_0320_ortholog CM000454 pviv_synteny_improved CDS 688096 694830 . - 0 ID=cds_PF14_0320_ortholog;pseudogene=0;Name=cds_PF14_0320_ortholog;Parent=rna_PF14_0320_ortholog CM000450 pviv_synteny_improved gene 306745 308068 . - . ID=PVX_091165;clustalpid=45.45;queryCoverage=99.10;AlignmentGaps=11;pseudogene=0;gene_type=protein;bitscore=130.71;truncated=1;alignmentLen=230;query=PF11_0109;queryLen=221;improved=1;replaced_genes=PVX_091165;Name=PVX_091165 CM000450 pviv_synteny_improved mRNA 306745 308068 . - . ID=rna_PVX_091165;truncated=1;pseudogene=0;Name=rna_PVX_091165;Parent=PVX_091165 CM000450 pviv_synteny_improved CDS 308029 308068 . - 0 ID=cds_PVX_091165-1;truncated=1;pseudogene=0;Name=cds_PVX_091165-1;Parent=rna_PVX_091165 CM000450 pviv_synteny_improved CDS 307644 307710 . - 1 ID=cds_PVX_091165-2;truncated=1;pseudogene=0;Name=cds_PVX_091165-2;Parent=rna_PVX_091165 CM000450 pviv_synteny_improved CDS 307432 307504 . - 2 ID=cds_PVX_091165-3;truncated=1;pseudogene=0;Name=cds_PVX_091165-3;Parent=rna_PVX_091165 CM000450 pviv_synteny_improved CDS 306745 307245 . - 0 ID=cds_PVX_091165-4;truncated=1;pseudogene=0;Name=cds_PVX_091165-4;Parent=rna_PVX_091165 CM000455 pviv_synteny_improved gene 1038833 1039322 . - . ID=PVX_300116;clustalpid=47.71;pseudogene=0;queryCoverage=100.00;AlignmentGaps=1;gene_type=protein;bitscore=80.24;truncated=1;alignmentLen=109;query=PF07_0060;queryLen=108;improved=1;Name=PVX_300116 CM000455 pviv_synteny_improved mRNA 1038833 1039322 . - . ID=rna_PVX_300116;truncated=1;pseudogene=0;Name=rna_PVX_300116;Parent=PVX_300116 CM000455 pviv_synteny_improved CDS 1039154 1039322 . - 0 ID=cds_PVX_300116-1;truncated=1;pseudogene=0;Name=cds_PVX_300116-1;Parent=rna_PVX_300116 CM000455 pviv_synteny_improved CDS 1038833 1038972 . - 1 ID=cds_PVX_300116-2;truncated=1;pseudogene=0;Name=cds_PVX_300116-2;Parent=rna_PVX_300116 CM000452 pviv_synteny_improved gene 1641447 1644343 . - . ID=PVX_300117;clustalpid=29.76;pseudogene=0;queryCoverage=99.57;AlignmentGaps=9;gene_type=protein;bitscore=143.74;truncated=1;alignmentLen=472;query=PFF0455w;queryLen=465;improved=1;Name=PVX_300117 CM000452 pviv_synteny_improved mRNA 1641447 1644343 . - . ID=rna_PVX_300117;truncated=1;pseudogene=0;Name=rna_PVX_300117;Parent=PVX_300117 CM000452 pviv_synteny_improved CDS 1644142 1644343 . - 0 ID=cds_PVX_300117-1;truncated=1;pseudogene=0;Name=cds_PVX_300117-1;Parent=rna_PVX_300117 CM000452 pviv_synteny_improved CDS 1642028 1642738 . - 1 ID=cds_PVX_300117-2;truncated=1;pseudogene=0;Name=cds_PVX_300117-2;Parent=rna_PVX_300117 CM000452 pviv_synteny_improved CDS 1641447 1641865 . - 1 ID=cds_PVX_300117-3;truncated=1;pseudogene=0;Name=cds_PVX_300117-3;Parent=rna_PVX_300117 CM000455 pviv_synteny_improved gene 1333558 1336200 . - . ID=PVX_300118;clustalpid=43.72;pseudogene=0;queryCoverage=100.00;AlignmentGaps=29;gene_type=protein;bitscore=689.12;truncated=0;alignmentLen=879;query=PF08_0101;queryLen=850;improved=1;Name=PVX_300118 CM000455 pviv_synteny_improved mRNA 1333558 1336200 . - . ID=rna_PVX_300118;truncated=0;pseudogene=0;Name=rna_PVX_300118;Parent=PVX_300118 CM000455 pviv_synteny_improved CDS 1335618 1336200 . - 0 ID=cds_PVX_300118-1;truncated=0;pseudogene=0;Name=cds_PVX_300118-1;Parent=rna_PVX_300118 CM000455 pviv_synteny_improved CDS 1333558 1335470 . - 1 ID=cds_PVX_300118-2;truncated=0;pseudogene=0;Name=cds_PVX_300118-2;Parent=rna_PVX_300118 CM000455 pviv_synteny_improved gene 374998 375276 . - . ID=PVX_300119;clustalpid=53.19;pseudogene=0;queryCoverage=100.00;AlignmentGaps=6;gene_type=protein;bitscore=90.87;truncated=0;alignmentLen=94;query=PF13_0039;queryLen=88;improved=1;Name=PVX_300119 CM000455 pviv_synteny_improved mRNA 374998 375276 . - . ID=rna_PVX_300119;truncated=0;pseudogene=0;Name=rna_PVX_300119;Parent=PVX_300119 CM000455 pviv_synteny_improved CDS 374998 375276 . - 0 ID=cds_PVX_300119-1;truncated=0;pseudogene=0;Name=cds_PVX_300119-1;Parent=rna_PVX_300119 CM000454 pviv_synteny_improved gene 890378 893882 . + . ID=PVX_085075;clustalpid=53.40;query=PF14_0272;improved=1;replaced_genes=PVX_085075%2CPVX_085080;gene_type=protein;Name=PVX_085075 CM000454 pviv_synteny_improved mRNA 890378 893882 . + . ID=mrna_PVX_085075;Name=mrna_PVX_085075;Parent=PVX_085075 CM000454 pviv_synteny_improved CDS 890378 890450 . + . ID=cds_up_PVX_085075-1;Name=cds_up_PVX_085075-1;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 890619 890658 . + . ID=cds_up_PVX_085075-2;Name=cds_up_PVX_085075-2;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 890845 890861 . + . ID=cds_up_PVX_085075-3;Name=cds_up_PVX_085075-3;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 891022 891154 . + . ID=cds_up_PVX_085075-4;Name=cds_up_PVX_085075-4;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 891293 891393 . + . ID=cds_up_PVX_085075-5;Name=cds_up_PVX_085075-5;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 891503 891594 . + . ID=cds_gw_PVX_085075-7;Name=cds_gw_PVX_085075-7;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 891691 891748 . + . ID=cds_gw_PVX_085075-8;Name=cds_gw_PVX_085075-8;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 891954 892039 . + . ID=cds_gw_PVX_085075-9;Name=cds_gw_PVX_085075-9;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 892213 892281 . + . ID=cds_gw_PVX_085075-10;Name=cds_gw_PVX_085075-10;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 892465 892573 . + . ID=cds_gw_PVX_085075-11;Name=cds_gw_PVX_085075-11;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 892735 892803 . + . ID=cds_gw_PVX_085075-12;Name=cds_gw_PVX_085075-12;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 893052 893110 . + . ID=cds_gw_PVX_085075-13;Name=cds_gw_PVX_085075-13;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 893338 893440 . + . ID=cds_down_PVX_085075-14;Name=cds_down_PVX_085075-14;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 893624 893677 . + . ID=cds_down_PVX_085075-15;Name=cds_down_PVX_085075-15;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved CDS 893806 893882 . + . ID=cds_down_PVX_085075-16;Name=cds_down_PVX_085075-16;Parent=mrna_PVX_085075 CM000454 pviv_synteny_improved gene 37121 59181 . + . ID=PVX_084145;clustalpid=54.58;query=PFL0115w;improved=1;replaced_genes=PVX_084145%2CPVX_084160;gene_type=protein;Name=PVX_084145 CM000454 pviv_synteny_improved mRNA 37121 59181 . + . ID=mrna_PVX_084145;Name=mrna_PVX_084145;Parent=PVX_084145 CM000454 pviv_synteny_improved CDS 37121 37210 . + . ID=cds_up_PVX_084145-1;Name=cds_up_PVX_084145-1;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 37325 37412 . + . ID=cds_up_PVX_084145-2;Name=cds_up_PVX_084145-2;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 37515 41520 . + . ID=cds_up_PVX_084145-3;Name=cds_up_PVX_084145-3;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 41722 42007 . + . ID=cds_up_PVX_084145-4;Name=cds_up_PVX_084145-4;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 42139 42226 . + . ID=cds_up_PVX_084145-5;Name=cds_up_PVX_084145-5;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 42362 42591 . + . ID=cds_up_PVX_084145-6;Name=cds_up_PVX_084145-6;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 42907 43182 . + . ID=cds_up_PVX_084145-7;Name=cds_up_PVX_084145-7;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 43362 43613 . + . ID=cds_up_PVX_084145-8;Name=cds_up_PVX_084145-8;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 43768 44065 . + . ID=cds_up_PVX_084145-9;Name=cds_up_PVX_084145-9;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 44195 44277 . + . ID=cds_up_PVX_084145-10;Name=cds_up_PVX_084145-10;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 44438 44595 . + . ID=cds_up_PVX_084145-11;Name=cds_up_PVX_084145-11;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 44944 45085 . + . ID=cds_up_PVX_084145-12;Name=cds_up_PVX_084145-12;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 45210 45430 . + . ID=cds_up_PVX_084145-13;Name=cds_up_PVX_084145-13;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 45615 45674 . + . ID=cds_up_PVX_084145-14;Name=cds_up_PVX_084145-14;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 46567 46969 . + . ID=cds_up_PVX_084145-15;Name=cds_up_PVX_084145-15;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 47093 47297 . + . ID=cds_up_PVX_084145-16;Name=cds_up_PVX_084145-16;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 47461 47666 . + . ID=cds_gw_PVX_084145-18;Name=cds_gw_PVX_084145-18;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 48081 49037 . + . ID=cds_gw_PVX_084145-19;Name=cds_gw_PVX_084145-19;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 49161 49287 . + . ID=cds_down_PVX_084145-20;Name=cds_down_PVX_084145-20;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 49565 49761 . + . ID=cds_down_PVX_084145-21;Name=cds_down_PVX_084145-21;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 49894 50145 . + . ID=cds_down_PVX_084145-22;Name=cds_down_PVX_084145-22;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 50268 50455 . + . ID=cds_down_PVX_084145-23;Name=cds_down_PVX_084145-23;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 50644 50720 . + . ID=cds_down_PVX_084145-24;Name=cds_down_PVX_084145-24;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 50838 50911 . + . ID=cds_down_PVX_084145-25;Name=cds_down_PVX_084145-25;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 51047 51526 . + . ID=cds_down_PVX_084145-26;Name=cds_down_PVX_084145-26;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 51765 55161 . + . ID=cds_down_PVX_084145-27;Name=cds_down_PVX_084145-27;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 55291 57091 . + . ID=cds_down_PVX_084145-28;Name=cds_down_PVX_084145-28;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 57228 57420 . + . ID=cds_down_PVX_084145-29;Name=cds_down_PVX_084145-29;Parent=mrna_PVX_084145 CM000454 pviv_synteny_improved CDS 57532 59181 . + . ID=cds_down_PVX_084145-30;Name=cds_down_PVX_084145-30;Parent=mrna_PVX_084145 CM000450 pviv_synteny_improved gene 1557435 1560165 . + . ID=PVX_300120;clustalpid=28.41;pseudogene=1;queryCoverage=99.33;AlignmentGaps=2;gene_type=protein;bitscore=30.42;truncated=1;alignmentLen=598;query=PF11_0411;queryLen=600;improved=1;Name=PVX_300120 CM000450 pviv_synteny_improved mRNA 1557435 1560165 . + . ID=rna_PVX_300120;truncated=1;pseudogene=1;Name=rna_PVX_300120;Parent=PVX_300120 CM000450 pviv_synteny_improved CDS 1557435 1557504 . + 0 ID=cds_PVX_300120-1;truncated=1;pseudogene=1;Name=cds_PVX_300120-1;Parent=rna_PVX_300120 CM000450 pviv_synteny_improved CDS 1558166 1558313 . + 1 ID=cds_PVX_300120-2;truncated=1;pseudogene=1;Name=cds_PVX_300120-2;Parent=rna_PVX_300120 CM000450 pviv_synteny_improved CDS 1558327 1558592 . + 2 ID=cds_PVX_300120-3;truncated=1;pseudogene=1;Name=cds_PVX_300120-3;Parent=rna_PVX_300120 CM000450 pviv_synteny_improved CDS 1558671 1559291 . + 1 ID=cds_PVX_300120-4;truncated=1;pseudogene=1;Name=cds_PVX_300120-4;Parent=rna_PVX_300120 CM000450 pviv_synteny_improved CDS 1559355 1559747 . + 1 ID=cds_PVX_300120-5;truncated=1;pseudogene=1;Name=cds_PVX_300120-5;Parent=rna_PVX_300120 CM000450 pviv_synteny_improved CDS 1560087 1560165 . + 2 ID=cds_PVX_300120-6;truncated=1;pseudogene=1;Name=cds_PVX_300120-6;Parent=rna_PVX_300120 CM000455 pviv_synteny_improved gene 2838682 2847692 . - . ID=PVX_101385;clustalpid=34.25;query=PFL2390c;improved=1;replaced_genes=PVX_101385%2CPVX_101380;gene_type=protein;Name=PVX_101385 CM000455 pviv_synteny_improved mRNA 2838682 2847692 . - . ID=mrna_PVX_101385;Name=mrna_PVX_101385;Parent=PVX_101385 CM000455 pviv_synteny_improved CDS 2840671 2847692 . - . ID=cds_up_PVX_101385-1;Name=cds_up_PVX_101385-1;Parent=mrna_PVX_101385 CM000455 pviv_synteny_improved CDS 2840480 2840559 . - . ID=cds_up_PVX_101385-2;Name=cds_up_PVX_101385-2;Parent=mrna_PVX_101385 CM000455 pviv_synteny_improved CDS 2840224 2840340 . - . ID=cds_up_PVX_101385-3;Name=cds_up_PVX_101385-3;Parent=mrna_PVX_101385 CM000455 pviv_synteny_improved CDS 2839869 2839971 . - . ID=cds_gw_PVX_101385-5;Name=cds_gw_PVX_101385-5;Parent=mrna_PVX_101385 CM000455 pviv_synteny_improved CDS 2838682 2839012 . - . ID=cds_gw_PVX_101385-6;Name=cds_gw_PVX_101385-6;Parent=mrna_PVX_101385 CM000446 pviv_synteny_improved gene 435726 436707 . - . ID=PVX_300121;clustalpid=46.67;pseudogene=0;queryCoverage=100.00;AlignmentGaps=12;gene_type=protein;bitscore=78.32;truncated=0;alignmentLen=136;query=MAL8P1.52;queryLen=124;improved=1;Name=PVX_300121 CM000446 pviv_synteny_improved mRNA 435726 436707 . - . ID=rna_PVX_300121;truncated=0;pseudogene=0;Name=rna_PVX_300121;Parent=PVX_300121 CM000446 pviv_synteny_improved CDS 436630 436707 . - 0 ID=cds_PVX_300121-1;truncated=0;pseudogene=0;Name=cds_PVX_300121-1;Parent=rna_PVX_300121 CM000446 pviv_synteny_improved CDS 435726 436037 . - 0 ID=cds_PVX_300121-2;truncated=0;pseudogene=0;Name=cds_PVX_300121-2;Parent=rna_PVX_300121 CM000455 pviv_synteny_improved gene 2108558 2110846 . + . ID=PVX_124175;clustalpid=41.95;queryCoverage=99.15;AlignmentGaps=21;pseudogene=0;gene_type=protein;bitscore=602.08;truncated=0;alignmentLen=836;query=PFL1480w;queryLen=822;improved=1;replaced_genes=PVX_124175;Name=PVX_124175 CM000455 pviv_synteny_improved mRNA 2108558 2110846 . + . ID=rna_PVX_124175;truncated=0;pseudogene=0;Name=rna_PVX_124175;Parent=PVX_124175 CM000455 pviv_synteny_improved CDS 2108558 2110846 . + 0 ID=cds_PVX_124175-1;truncated=0;pseudogene=0;Name=cds_PVX_124175-1;Parent=rna_PVX_124175 CM000454 pviv_synteny_improved gene 1756079 1756578 . - . ID=PF14_0082_ortholog;query=PF14_0082;improved=1;pseudogene=0;Name=PVX_300123;gene_type=protein CM000454 pviv_synteny_improved mRNA 1756079 1756578 . - . ID=rna_PF14_0082_ortholog;pseudogene=0;Name=rna_PF14_0082_ortholog;Parent=PF14_0082_ortholog CM000454 pviv_synteny_improved CDS 1756079 1756578 . - 0 ID=cds_PF14_0082_ortholog-1;pseudogene=0;Name=cds_PF14_0082_ortholog-1;Parent=rna_PF14_0082_ortholog CM000444 pviv_synteny_improved gene 667653 668855 . + . ID=PVX_300124;clustalpid=59.55;pseudogene=0;queryCoverage=100.00;AlignmentGaps=0;gene_type=protein;bitscore=601.57;truncated=1;alignmentLen=403;query=MAL7P1.118;queryLen=403;improved=1;Name=PVX_300124 CM000444 pviv_synteny_improved mRNA 667653 668855 . + . ID=rna_PVX_300124;truncated=1;pseudogene=0;Name=rna_PVX_300124;Parent=PVX_300124 CM000444 pviv_synteny_improved CDS 667653 668855 . + 0 ID=cds_PVX_300124-1;truncated=1;pseudogene=0;Name=cds_PVX_300124-1;Parent=rna_PVX_300124 CM000454 pviv_synteny_improved gene 1066248 1070846 . - . ID=PVX_085290;clustalpid=30.51;query=PF14_0229;improved=1;replaced_genes=PVX_085290%2CPVX_085285;gene_type=protein;Name=PVX_085290 CM000454 pviv_synteny_improved mRNA 1066248 1070846 . - . ID=mrna_PVX_085290;Name=mrna_PVX_085290;Parent=PVX_085290 CM000454 pviv_synteny_improved CDS 1067893 1070846 . - . ID=cds_gw_PVX_085290-2;Name=cds_gw_PVX_085290-2;Parent=mrna_PVX_085290 CM000454 pviv_synteny_improved CDS 1067212 1067739 . - . ID=cds_gw_PVX_085290-3;Name=cds_gw_PVX_085290-3;Parent=mrna_PVX_085290 CM000454 pviv_synteny_improved CDS 1066468 1067043 . - . ID=cds_gw_PVX_085290-4;Name=cds_gw_PVX_085290-4;Parent=mrna_PVX_085290 CM000454 pviv_synteny_improved CDS 1066248 1066347 . - . ID=cds_gw_PVX_085290-5;Name=cds_gw_PVX_085290-5;Parent=mrna_PVX_085290 CM000446 pviv_synteny_improved gene 1169360 1169581 . + . ID=PVX_300125;clustalpid=33.78;pseudogene=0;queryCoverage=100.00;AlignmentGaps=4;gene_type=protein;bitscore=37.05;truncated=1;alignmentLen=75;query=PFD1007w;queryLen=71;improved=1;Name=PVX_300125 CM000446 pviv_synteny_improved mRNA 1169360 1169581 . + . ID=rna_PVX_300125;truncated=1;pseudogene=0;Name=rna_PVX_300125;Parent=PVX_300125 CM000446 pviv_synteny_improved CDS 1169360 1169581 . + 0 ID=cds_PVX_300125-1;truncated=1;pseudogene=0;Name=cds_PVX_300125-1;Parent=rna_PVX_300125 CM000444 pviv_synteny_improved gene 665693 666421 . + . ID=PVX_300126;clustalpid=30.92;pseudogene=0;queryCoverage=100.00;AlignmentGaps=4;gene_type=protein;bitscore=106.45;truncated=1;alignmentLen=249;query=PF07_0090;queryLen=245;improved=1;Name=PVX_300126 CM000444 pviv_synteny_improved mRNA 665693 666421 . + . ID=rna_PVX_300126;truncated=1;pseudogene=0;Name=rna_PVX_300126;Parent=PVX_300126 CM000444 pviv_synteny_improved CDS 665693 666421 . + 0 ID=cds_PVX_300126-1;truncated=1;pseudogene=0;Name=cds_PVX_300126-1;Parent=rna_PVX_300126 CM000453 pviv_synteny_improved gene 1520088 1527446 . - . ID=PVX_300127;clustalpid=42.94;pseudogene=0;queryCoverage=99.69;AlignmentGaps=52;gene_type=protein;bitscore=1530.10;truncated=1;alignmentLen=2012;query=PF14_0648;queryLen=1966;improved=1;Name=PVX_300127 CM000453 pviv_synteny_improved mRNA 1520088 1527446 . - . ID=rna_PVX_300127;truncated=1;pseudogene=0;Name=rna_PVX_300127;Parent=PVX_300127 CM000453 pviv_synteny_improved CDS 1527403 1527446 . - 0 ID=cds_PVX_300127-1;truncated=1;pseudogene=0;Name=cds_PVX_300127-1;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1526645 1527087 . - 2 ID=cds_PVX_300127-2;truncated=1;pseudogene=0;Name=cds_PVX_300127-2;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1526168 1526375 . - 1 ID=cds_PVX_300127-3;truncated=1;pseudogene=0;Name=cds_PVX_300127-3;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1525907 1525977 . - 2 ID=cds_PVX_300127-4;truncated=1;pseudogene=0;Name=cds_PVX_300127-4;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1525622 1525740 . - 1 ID=cds_PVX_300127-5;truncated=1;pseudogene=0;Name=cds_PVX_300127-5;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1525339 1525460 . - 0 ID=cds_PVX_300127-6;truncated=1;pseudogene=0;Name=cds_PVX_300127-6;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1522267 1525224 . - 2 ID=cds_PVX_300127-7;truncated=1;pseudogene=0;Name=cds_PVX_300127-7;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1521999 1522110 . - 2 ID=cds_PVX_300127-8;truncated=1;pseudogene=0;Name=cds_PVX_300127-8;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1521282 1521893 . - 0 ID=cds_PVX_300127-9;truncated=1;pseudogene=0;Name=cds_PVX_300127-9;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1520942 1521101 . - 0 ID=cds_PVX_300127-10;truncated=1;pseudogene=0;Name=cds_PVX_300127-10;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved CDS 1520088 1520845 . - 1 ID=cds_PVX_300127-11;truncated=1;pseudogene=0;Name=cds_PVX_300127-11;Parent=rna_PVX_300127 CM000453 pviv_synteny_improved gene 907828 909900 . - . ID=PVX_30128;clustalpid=21.82;pseudogene=0;queryCoverage=99.86;AlignmentGaps=14;gene_type=protein;bitscore=85.61;truncated=1;alignmentLen=720;query=MAL13P1.158;queryLen=707;improved=1;Name=PVX_30128 CM000453 pviv_synteny_improved mRNA 907828 909900 . - . ID=rna_PVX_30128;truncated=1;pseudogene=0;Name=rna_PVX_30128;Parent=PVX_30128 CM000453 pviv_synteny_improved CDS 908931 909900 . - 0 ID=cds_PVX_30128-1;truncated=1;pseudogene=0;Name=cds_PVX_30128-1;Parent=rna_PVX_30128 CM000453 pviv_synteny_improved CDS 907828 908771 . - 1 ID=cds_PVX_30128-2;truncated=1;pseudogene=0;Name=cds_PVX_30128-2;Parent=rna_PVX_30128 CM000450 pviv_synteny_improved gene 279221 283500 . - . ID=PVX_091135b;clustalpid=22.78;query=PF11_0540a;improved=1;replaced_genes=PVX_091135;gene_type=protein;Name=PVX_091135b CM000450 pviv_synteny_improved mRNA 279221 283500 . - . ID=mrna_PVX_091135b;Name=mrna_PVX_091135b;Parent=PVX_091135b CM000450 pviv_synteny_improved CDS 282096 283500 . - . ID=cds_PVX_091135b-1;Name=cds_PVX_091135b-1;Parent=mrna_PVX_091135b CM000450 pviv_synteny_improved CDS 279221 281850 . - . ID=cds_PVX_091135b-2;Name=cds_PVX_091135b-2;Parent=mrna_PVX_091135b CM000450 pviv_synteny_improved gene 284486 286008 . - . ID=PVX_091135a;clustalpid=50.00;query=PF11_0540;improved=1;replaced_genes=PVX_091135;gene_type=protein;Name=PVX_091135a CM000450 pviv_synteny_improved mRNA 284486 286008 . - . ID=mrna_PVX_091135a;Name=mrna_PVX_091135a;Parent=PVX_091135a CM000450 pviv_synteny_improved CDS 285424 286008 . - . ID=cds_PVX_091135a-1;Name=cds_PVX_091135a-1;Parent=mrna_PVX_091135a CM000450 pviv_synteny_improved CDS 284837 285284 . - . ID=cds_PVX_091135a-2;Name=cds_PVX_091135a-2;Parent=mrna_PVX_091135a CM000450 pviv_synteny_improved CDS 284486 284748 . - . ID=cds_PVX_091135a-3;Name=cds_PVX_091135a-3;Parent=mrna_PVX_091135a CM000450 pviv_synteny_improved gene 704777 705004 . + . ID=PVX_300129;clustalpid=54.76;pseudogene=0;queryCoverage=100.00;AlignmentGaps=1;gene_type=protein;bitscore=98.79;truncated=1;alignmentLen=84;query=PF11_0215;queryLen=83;improved=1;Name=PVX_300129 CM000450 pviv_synteny_improved mRNA 704777 705004 . + . ID=rna_PVX_300129;truncated=1;pseudogene=0;Name=rna_PVX_300129;Parent=PVX_300129 CM000450 pviv_synteny_improved CDS 704777 705004 . + 0 ID=cds_PVX_300129-1;truncated=1;pseudogene=0;Name=cds_PVX_300129-1;Parent=rna_PVX_300129 CM000454 pviv_synteny_improved gene 748596 751976 . + . ID=PVX_084875;clustalpid=28.78;query=PF14_0313;improved=1;replaced_genes=PVX_084875%2CPVX_084880;gene_type=protein;Name=PVX_084875 CM000454 pviv_synteny_improved mRNA 748596 751976 . + . ID=mrna_PVX_084875;Name=mrna_PVX_084875;Parent=PVX_084875 CM000454 pviv_synteny_improved CDS 748596 748685 . + . ID=cds_gw_PVX_084875-3;Name=cds_gw_PVX_084875-3;Parent=mrna_PVX_084875 CM000454 pviv_synteny_improved CDS 748791 751976 . + . ID=cds_gw_PVX_084875-4;Name=cds_gw_PVX_084875-4;Parent=mrna_PVX_084875 Pk_strainH_chr12 pkno_synteny_improved gene 54075 57240 . + . ID=PKH_120130;clustalpid=40.83;query=MAL13P1.267;improved=1;replaced_genes=PKH_120130%2CPKH_120140;gene_type=protein;Name=PKH_120130 Pk_strainH_chr12 pkno_synteny_improved mRNA 54075 57240 . + . ID=mrna_PKH_120130;Name=mrna_PKH_120130;Parent=PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 54075 54384 . + . ID=cds_up_PKH_120130-1;Name=cds_up_PKH_120130-1;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 54547 54620 . + . ID=cds_up_PKH_120130-2;Name=cds_up_PKH_120130-2;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 54812 54858 . + . ID=cds_up_PKH_120130-3;Name=cds_up_PKH_120130-3;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 54993 55090 . + . ID=cds_up_PKH_120130-4;Name=cds_up_PKH_120130-4;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 55487 55678 . + . ID=cds_gw_PKH_120130-6;Name=cds_gw_PKH_120130-6;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 56072 56174 . + . ID=cds_gw_PKH_120130-7;Name=cds_gw_PKH_120130-7;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 56339 56442 . + . ID=cds_down_PKH_120130-8;Name=cds_down_PKH_120130-8;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 56556 56675 . + . ID=cds_down_PKH_120130-9;Name=cds_down_PKH_120130-9;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 56916 57005 . + . ID=cds_down_PKH_120130-10;Name=cds_down_PKH_120130-10;Parent=mrna_PKH_120130 Pk_strainH_chr12 pkno_synteny_improved CDS 57143 57240 . + . ID=cds_down_PKH_120130-11;Name=cds_down_PKH_120130-11;Parent=mrna_PKH_120130 Pk_strainH_chr09 pkno_synteny_improved gene 2020308 2021145 . - . ID=PKH_094445;clustalpid=57.84;pseudogene=0;queryCoverage=98.04;AlignmentGaps=0;gene_type=protein;bitscore=82.64;truncated=1;alignmentLen=100;query=PF11_0480a;queryLen=102;improved=1;Name=PKH_094445 Pk_strainH_chr09 pkno_synteny_improved mRNA 2020308 2021145 . - . ID=rna_PKH_094445;truncated=1;pseudogene=0;Name=rna_PKH_094445;Parent=PKH_094445 Pk_strainH_chr09 pkno_synteny_improved CDS 2021016 2021145 . - 0 ID=cds_PKH_094445-1;truncated=1;pseudogene=0;Name=cds_PKH_094445-1;Parent=rna_PKH_094445 Pk_strainH_chr09 pkno_synteny_improved CDS 2020813 2020882 . - 1 ID=cds_PKH_094445-2;truncated=1;pseudogene=0;Name=cds_PKH_094445-2;Parent=rna_PKH_094445 Pk_strainH_chr09 pkno_synteny_improved CDS 2020560 2020623 . - 2 ID=cds_PKH_094445-3;truncated=1;pseudogene=0;Name=cds_PKH_094445-3;Parent=rna_PKH_094445 Pk_strainH_chr09 pkno_synteny_improved CDS 2020308 2020349 . - 0 ID=cds_PKH_094445-4;truncated=1;pseudogene=0;Name=cds_PKH_094445-4;Parent=rna_PKH_094445 Pk_strainH_chr07 pkno_synteny_improved gene 557830 558392 . + . ID=PKH_071105;clustalpid=40.70;pseudogene=0;queryCoverage=98.84;AlignmentGaps=0;gene_type=protein;bitscore=43.49;truncated=0;alignmentLen=85;query=PFI0675w;queryLen=86;improved=1;Name=PKH_071105 Pk_strainH_chr07 pkno_synteny_improved mRNA 557830 558392 . + . ID=rna_PKH_071105;truncated=0;pseudogene=0;Name=rna_PKH_071105;Parent=PKH_071105 Pk_strainH_chr07 pkno_synteny_improved CDS 557830 557959 . + 0 ID=cds_PKH_071105-1;truncated=0;pseudogene=0;Name=cds_PKH_071105-1;Parent=rna_PKH_071105 Pk_strainH_chr07 pkno_synteny_improved CDS 558307 558392 . + 1 ID=cds_PKH_071105-2;truncated=0;pseudogene=0;Name=cds_PKH_071105-2;Parent=rna_PKH_071105 Pk_strainH_chr11 pkno_synteny_improved gene 204290 217336 . + . ID=PKH_110430;clustalpid=39.13;query=MAL13P1.334;improved=1;replaced_genes=PKH_110430%2CPKH_110440;gene_type=protein;Name=PKH_110430 Pk_strainH_chr11 pkno_synteny_improved mRNA 204290 217336 . + . ID=mrna_PKH_110430;Name=mrna_PKH_110430;Parent=PKH_110430 Pk_strainH_chr11 pkno_synteny_improved CDS 204290 205167 . + . ID=cds_up_PKH_110430-1;Name=cds_up_PKH_110430-1;Parent=mrna_PKH_110430 Pk_strainH_chr11 pkno_synteny_improved CDS 205308 206346 . + . ID=cds_gw_PKH_110430-3;Name=cds_gw_PKH_110430-3;Parent=mrna_PKH_110430 Pk_strainH_chr11 pkno_synteny_improved CDS 207651 207718 . + . ID=cds_gw_PKH_110430-4;Name=cds_gw_PKH_110430-4;Parent=mrna_PKH_110430 Pk_strainH_chr11 pkno_synteny_improved CDS 207907 216162 . + . ID=cds_gw_PKH_110430-5;Name=cds_gw_PKH_110430-5;Parent=mrna_PKH_110430 Pk_strainH_chr11 pkno_synteny_improved CDS 216493 217336 . + . ID=cds_gw_PKH_110430-6;Name=cds_gw_PKH_110430-6;Parent=mrna_PKH_110430 Pk_strainH_chr09 pkno_synteny_improved gene 253224 253808 . + . ID=PKH_090555;clustalpid=50.47;pseudogene=0;queryCoverage=100.00;AlignmentGaps=0;gene_type=protein;bitscore=122.65;truncated=1;alignmentLen=107;query=PF11_0095a;queryLen=107;improved=1;Name=PKH_090555 Pk_strainH_chr09 pkno_synteny_improved mRNA 253224 253808 . + . ID=rna_PKH_090555;truncated=1;pseudogene=0;Name=rna_PKH_090555;Parent=PKH_090555 Pk_strainH_chr09 pkno_synteny_improved CDS 253224 253340 . + 0 ID=cds_PKH_090555-1;truncated=1;pseudogene=0;Name=cds_PKH_090555-1;Parent=rna_PKH_090555 Pk_strainH_chr09 pkno_synteny_improved CDS 253611 253808 . + 0 ID=cds_PKH_090555-2;truncated=1;pseudogene=0;Name=cds_PKH_090555-2;Parent=rna_PKH_090555 Pk_strainH_chr11 pkno_synteny_improved gene 1724320 1724676 . - . ID=PKH_113655;clustalpid=50.42;pseudogene=0;queryCoverage=100.00;AlignmentGaps=1;gene_type=protein;bitscore=161.37;truncated=0;alignmentLen=119;query=PFF0600w;queryLen=118;improved=1;Name=PKH_113655 Pk_strainH_chr11 pkno_synteny_improved mRNA 1724320 1724676 . - . ID=rna_PKH_113655;truncated=0;pseudogene=0;Name=rna_PKH_113655;Parent=PKH_113655 Pk_strainH_chr11 pkno_synteny_improved CDS 1724320 1724676 . - 0 ID=cds_PKH_113655-1;truncated=0;pseudogene=0;Name=cds_PKH_113655-1;Parent=rna_PKH_113655 Pk_strainH_chr13 pkno_synteny_improved gene 2097673 2098746 21.5 + . ID=PF14_0031b_ortholog;clustalpid=23.76;query=PF14_0031b;improved=1;replaced_genes=PKH_134370;Name=PKH_134370b;gene_type=protein Pk_strainH_chr13 pkno_synteny_improved mRNA 2097673 2098746 . + . ID=rna_PF14_0031b_ortholog;Parent=PF14_0031b_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 2097673 2098746 . + . ID=cds_PF14_0031b_ortholog-1;Parent=rna_PF14_0031b_ortholog Pk_strainH_chr13 pkno_synteny_improved gene 2092887 2096672 . + . ID=PF14_0031_ortholog;clustalpid=28.78;query=PF14_0031;improved=1;replaced_genes=PKH_134370;Name=PKH_134370a;gene_type=protein Pk_strainH_chr13 pkno_synteny_improved mRNA 2092887 2096672 . + . ID=rna_PF14_0031_ortholog;Parent=PF14_0031_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 2092887 2096672 . + . ID=cds_PF14_0031_ortholog-1;Parent=rna_PF14_0031_ortholog Pk_strainH_chr11 pkno_synteny_improved gene 1985371 1991200 . - . ID=PFF0410w_ortholog;clustalpid=33.76;query=PFF0410w;improved=1;replaced_genes=PKH_114100,PKH_114090;Name=PKH_114100;gene_type=protein Pk_strainH_chr11 pkno_synteny_improved mRNA 1985371 1991200 . - . ID=rna_PFF0410w_ortholog;Parent=PFF0410w_ortholog Pk_strainH_chr11 pkno_synteny_improved CDS 1985371 1986829 . - . ID=cds_PFF0410w_ortholog-1;Parent=rna_PFF0410w_ortholog Pk_strainH_chr11 pkno_synteny_improved CDS 1987437 1991200 . - . ID=cds_PFF0410w_ortholog-3;Parent=rna_PFF0410w_ortholog Pk_strainH_chr11 pkno_synteny_improved CDS 1987197 1987397 . - . ID=cds_PFF0410w_ortholog-2;Parent=rna_PFF0410w_ortholog Pk_strainH_chr06 pkno_synteny_improved gene 452952 458341 . - . ID=PKH_060970;clustalpid=33.72;query=PF10_0248;improved=1;replaced_genes=PKH_060970%2CPKH_060960;gene_type=protein;Name=PKH_060970 Pk_strainH_chr06 pkno_synteny_improved mRNA 452952 458341 . - . ID=mrna_PKH_060970;Name=mrna_PKH_060970;Parent=PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 457966 458341 . - . ID=cds_up_PKH_060970-1;Name=cds_up_PKH_060970-1;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 457709 457853 . - . ID=cds_up_PKH_060970-2;Name=cds_up_PKH_060970-2;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 457470 457543 . - . ID=cds_up_PKH_060970-3;Name=cds_up_PKH_060970-3;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 457095 457313 . - . ID=cds_up_PKH_060970-4;Name=cds_up_PKH_060970-4;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 456783 456968 . - . ID=cds_up_PKH_060970-5;Name=cds_up_PKH_060970-5;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 456552 456647 . - . ID=cds_gw_PKH_060970-7;Name=cds_gw_PKH_060970-7;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 456210 456385 . - . ID=cds_gw_PKH_060970-8;Name=cds_gw_PKH_060970-8;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 455833 456049 . - . ID=cds_gw_PKH_060970-9;Name=cds_gw_PKH_060970-9;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 455646 455699 . - . ID=cds_gw_PKH_060970-10;Name=cds_gw_PKH_060970-10;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 455384 455502 . - . ID=cds_gw_PKH_060970-11;Name=cds_gw_PKH_060970-11;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 454680 455229 . - . ID=cds_gw_PKH_060970-12;Name=cds_gw_PKH_060970-12;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 453254 454540 . - . ID=cds_down_PKH_060970-13;Name=cds_down_PKH_060970-13;Parent=mrna_PKH_060970 Pk_strainH_chr06 pkno_synteny_improved CDS 452952 453067 . - . ID=cds_down_PKH_060970-14;Name=cds_down_PKH_060970-14;Parent=mrna_PKH_060970 Pk_strainH_chr13 pkno_synteny_improved gene 1857325 1858294 . + . ID=PF14_0089b_ortholog;query=PF14_0089-b;improved=1;pseudogene=0;Name=PKH_133845;gene_type=protein Pk_strainH_chr13 pkno_synteny_improved mRNA 1857325 1858294 . + . ID=rna_PF14_0089b_ortholog;pseudogene=0;Parent=PF14_0089b_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 1857541 1857997 . + 1 ID=cds_PF14_0089b_ortholog-2;pseudogene=0;Parent=rna_PF14_0089b_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 1857325 1857379 . + 0 ID=cds_PF14_0089b_ortholog-1;pseudogene=0;Parent=rna_PF14_0089b_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 1858150 1858294 . + 2 ID=cds_PF14_0089b_ortholog-3;pseudogene=0;Parent=rna_PF14_0089b_ortholog Pk_strainH_chr13 pkno_synteny_improved gene 1044848 1045423 . - . ID=PKH_132175;clustalpid=3.27;pseudogene=1;queryCoverage=4.67;AlignmentGaps=0;gene_type=protein;bitscore=-155.24;truncated=1;alignmentLen=110;query=PF14_0264;queryLen=2353;improved=1;Name=PKH_132175 Pk_strainH_chr13 pkno_synteny_improved mRNA 1044848 1045423 . - . ID=rna_PKH_132175;truncated=1;pseudogene=1;Name=rna_PKH_132175;Parent=PKH_132175 Pk_strainH_chr13 pkno_synteny_improved CDS 1045388 1045423 . - 0 ID=cds_PKH_132175-1;truncated=1;pseudogene=1;Name=cds_PKH_132175-1;Parent=rna_PKH_132175 Pk_strainH_chr13 pkno_synteny_improved CDS 1044848 1045131 . - 0 ID=cds_PKH_132175-2;truncated=1;pseudogene=1;Name=cds_PKH_132175-2;Parent=rna_PKH_132175 Pk_strainH_chr12 pkno_synteny_improved gene 1414494 1417937 . - . ID=PF14_0683_ortholog;clustalpid=21.67;query=PF14_0683;improved=1;replaced_genes=PKH_123370;Name=PKH_123370a;gene_type=protein Pk_strainH_chr12 pkno_synteny_improved mRNA 1414494 1417937 . - . ID=rna_PF14_0683_ortholog;Parent=PF14_0683_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1414494 1417937 . - 0 ID=cds_PF14_0683_ortholog-1;Parent=rna_PF14_0683_ortholog Pk_strainH_chr12 pkno_synteny_improved gene 1411516 1413777 . - . ID=PF14_0684_ortholog;clustalpid=13.77;query=PF14_0684;improved=1;replaced_genes=PKH_123370;Name=PKH_123370b;gene_type=protein Pk_strainH_chr12 pkno_synteny_improved mRNA 1411516 1413777 . - . ID=rna_PF14_0684_ortholog;Parent=PF14_0684_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1411516 1413777 . - 0 ID=cds_PF14_0684_ortholog-1;Parent=rna_PF14_0684_ortholog Pk_strainH_chr01 pkno_synteny_improved gene 22130 22613 . - . ID=PF07_0008_ortholog;query=PF07_0008;improved=1;replaced_genes=PKH_010080;Name=PKH_010080;gene_type=protein Pk_strainH_chr01 pkno_synteny_improved mRNA 22130 22613 . - . ID=rna_PF07_0008_ortholog;Parent=PF07_0008_ortholog Pk_strainH_chr01 pkno_synteny_improved CDS 22404 22613 . - 0 ID=cds_PF07_0008_ortholog-1;Parent=rna_PF07_0008_ortholog Pk_strainH_chr01 pkno_synteny_improved CDS 22130 22228 . - 0 ID=cds_PF07_0008_ortholog-2;Parent=rna_PF07_0008_ortholog Pk_strainH_chr12 pkno_synteny_improved gene 1646614 1647628 . - . ID=PF14_0633a_ortholog;query=PF14_0633a;improved=1;pseudogene=0;Name=PKH_123915;gene_type=protein Pk_strainH_chr12 pkno_synteny_improved mRNA 1646614 1647628 . - . ID=rna_PF14_0633a_ortholog;pseudogene=0;Parent=PF14_0633a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1646614 1646669 . - 1 ID=cds_PF14_0633a_ortholog-6;pseudogene=0;Parent=rna_PF14_0633a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1647321 1647385 . - 2 ID=cds_PF14_0633a_ortholog-2;pseudogene=0;Parent=rna_PF14_0633a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1647151 1647210 . - 1 ID=cds_PF14_0633a_ortholog-3;pseudogene=0;Parent=rna_PF14_0633a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1647040 1647050 . - 1 ID=cds_PF14_0633a_ortholog-4;pseudogene=0;Parent=rna_PF14_0633a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1647510 1647628 . - 0 ID=cds_PF14_0633a_ortholog-1;pseudogene=0;Parent=rna_PF14_0633a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1646763 1646841 . - 0 ID=cds_PF14_0633a_ortholog-5;pseudogene=0;Parent=rna_PF14_0633a_ortholog Pk_strainH_chr10 pkno_synteny_improved gene 845234 848733 . + . ID=PKH_101755;clustalpid=17.68;pseudogene=1;queryCoverage=98.98;AlignmentGaps=9;gene_type=protein;bitscore=-137.43;truncated=1;alignmentLen=492;query=PFE0755c;queryLen=488;improved=1;Name=PKH_101755 Pk_strainH_chr10 pkno_synteny_improved mRNA 845234 848733 . + . ID=rna_PKH_101755;truncated=1;pseudogene=1;Name=rna_PKH_101755;Parent=PKH_101755 Pk_strainH_chr10 pkno_synteny_improved CDS 845234 845668 . + 0 ID=cds_PKH_101755-1;truncated=1;pseudogene=1;Name=cds_PKH_101755-1;Parent=rna_PKH_101755 Pk_strainH_chr10 pkno_synteny_improved CDS 845683 845771 . + 2 ID=cds_PKH_101755-2;truncated=1;pseudogene=1;Name=cds_PKH_101755-2;Parent=rna_PKH_101755 Pk_strainH_chr10 pkno_synteny_improved CDS 846560 846826 . + 1 ID=cds_PKH_101755-3;truncated=1;pseudogene=1;Name=cds_PKH_101755-3;Parent=rna_PKH_101755 Pk_strainH_chr10 pkno_synteny_improved CDS 846886 847138 . + 1 ID=cds_PKH_101755-4;truncated=1;pseudogene=1;Name=cds_PKH_101755-4;Parent=rna_PKH_101755 Pk_strainH_chr10 pkno_synteny_improved CDS 847917 848137 . + 2 ID=cds_PKH_101755-5;truncated=1;pseudogene=1;Name=cds_PKH_101755-5;Parent=rna_PKH_101755 Pk_strainH_chr10 pkno_synteny_improved CDS 848657 848733 . + 1 ID=cds_PKH_101755-6;truncated=1;pseudogene=1;Name=cds_PKH_101755-6;Parent=rna_PKH_101755 Pk_strainH_chr12 pkno_synteny_improved gene 1069758 1070977 . - . ID=PKH_122505;clustalpid=57.55;pseudogene=0;queryCoverage=99.28;AlignmentGaps=0;gene_type=protein;bitscore=86.23;truncated=1;alignmentLen=137;query=PF13_0156a;queryLen=138;improved=1;Name=PKH_122505 Pk_strainH_chr12 pkno_synteny_improved mRNA 1069758 1070977 . - . ID=rna_PKH_122505;truncated=1;pseudogene=0;Name=rna_PKH_122505;Parent=PKH_122505 Pk_strainH_chr12 pkno_synteny_improved CDS 1070876 1070977 . - 0 ID=cds_PKH_122505-1;truncated=1;pseudogene=0;Name=cds_PKH_122505-1;Parent=rna_PKH_122505 Pk_strainH_chr12 pkno_synteny_improved CDS 1070534 1070637 . - 0 ID=cds_PKH_122505-2;truncated=1;pseudogene=0;Name=cds_PKH_122505-2;Parent=rna_PKH_122505 Pk_strainH_chr12 pkno_synteny_improved CDS 1070418 1070434 . - 2 ID=cds_PKH_122505-3;truncated=1;pseudogene=0;Name=cds_PKH_122505-3;Parent=rna_PKH_122505 Pk_strainH_chr12 pkno_synteny_improved CDS 1070000 1070070 . - 1 ID=cds_PKH_122505-4;truncated=1;pseudogene=0;Name=cds_PKH_122505-4;Parent=rna_PKH_122505 Pk_strainH_chr12 pkno_synteny_improved CDS 1069758 1069853 . - 0 ID=cds_PKH_122505-5;truncated=1;pseudogene=0;Name=cds_PKH_122505-5;Parent=rna_PKH_122505 Pk_strainH_chr12 pkno_synteny_improved gene 1809666 1828698 . + . ID=PF14_0600a_ortholog;clustalpid=0.93;query=PF14_0600a;improved=1;replaced_genes=PKH_124250,PKH_124260;Name=PKH_124250;gene_type=protein Pk_strainH_chr12 pkno_synteny_improved mRNA 1809666 1828698 . + . ID=rna_PF14_0600a_ortholog;Parent=PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1809666 1809953 . + 0 ID=cds_PF14_0600a_ortholog-1;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1810599 1810663 . + 0 ID=cds_PF14_0600a_ortholog-4;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1811731 1823241 . + 2 ID=cds_PF14_0600a_ortholog-8;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1810072 1810157 . + 0 ID=cds_PF14_0600a_ortholog-2;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1823468 1827767 . + 2 ID=cds_PF14_0600a_ortholog-9;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1828031 1828420 . + 0 ID=cds_PF14_0600a_ortholog-10;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1810310 1810442 . + 2 ID=cds_PF14_0600a_ortholog-3;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1828624 1828698 . + 0 ID=cds_PF14_0600a_ortholog-11;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1811476 1811568 . + 2 ID=cds_PF14_0600a_ortholog-7;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1810801 1810860 . + 2 ID=cds_PF14_0600a_ortholog-5;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr12 pkno_synteny_improved CDS 1811050 1811133 . + 2 ID=cds_PF14_0600a_ortholog-6;Parent=rna_PF14_0600a_ortholog Pk_strainH_chr06 pkno_synteny_improved gene 480982 486788 . - . ID=PF10_0254_ortholog;clustalpid=28.19;query=PF10_0254;improved=1;replaced_genes=PKH_061040,PKH_061030,PKH_061020;Name=PKH_061040;gene_type=protein Pk_strainH_chr06 pkno_synteny_improved mRNA 480982 486788 . - . ID=rna_PF10_0254_ortholog;Parent=PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 482941 483089 . - . ID=cds_PF10_0254_ortholog-8;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 483506 483571 . - . ID=cds_PF10_0254_ortholog-10;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 481176 481283 . - . ID=cds_PF10_0254_ortholog-2;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 481425 481496 . - . ID=cds_PF10_0254_ortholog-3;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 482459 482730 . - . ID=cds_PF10_0254_ortholog-7;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 486269 486788 . - . ID=cds_PF10_0254_ortholog-14;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 483253 483347 . - . ID=cds_PF10_0254_ortholog-9;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 484527 486205 . - . ID=cds_PF10_0254_ortholog-13;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 480982 481080 . - . ID=cds_PF10_0254_ortholog-1;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 481871 482158 . - . ID=cds_PF10_0254_ortholog-5;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 483797 483892 . - . ID=cds_PF10_0254_ortholog-11;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 484023 484394 . - . ID=cds_PF10_0254_ortholog-12;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 481652 481690 . - . ID=cds_PF10_0254_ortholog-4;Parent=rna_PF10_0254_ortholog Pk_strainH_chr06 pkno_synteny_improved CDS 482283 482321 . - . ID=cds_PF10_0254_ortholog-6;Parent=rna_PF10_0254_ortholog Pk_strainH_chr05 pkno_synteny_improved gene 866139 868540 . - . ID=PFD0775c_ortholog;query=PFD0775c;improved=1;replaced_genes=PKH_051970;Name=PKH_051970;gene_type=protein Pk_strainH_chr05 pkno_synteny_improved mRNA 866139 868540 . - . ID=rna_PFD0775c_ortholog;Parent=PFD0775c_ortholog Pk_strainH_chr05 pkno_synteny_improved CDS 866633 866722 . - . ID=cds_PFD0775c_ortholog-3;Parent=rna_PFD0775c_ortholog Pk_strainH_chr05 pkno_synteny_improved CDS 866139 866191 . - . ID=cds_PFD0775c_ortholog-1;Parent=rna_PFD0775c_ortholog Pk_strainH_chr05 pkno_synteny_improved CDS 866835 866941 . - . ID=cds_PFD0775c_ortholog-4;Parent=rna_PFD0775c_ortholog Pk_strainH_chr05 pkno_synteny_improved CDS 867532 868540 . - . ID=cds_PFD0775c_ortholog-6;Parent=rna_PFD0775c_ortholog Pk_strainH_chr05 pkno_synteny_improved CDS 866389 866452 . - . ID=cds_PFD0775c_ortholog-2;Parent=rna_PFD0775c_ortholog Pk_strainH_chr05 pkno_synteny_improved CDS 867104 867190 . - . ID=cds_PFD0775c_ortholog-5;Parent=rna_PFD0775c_ortholog Pk_strainH_chr03 pkno_synteny_improved gene 155552 158109 . - . ID=PKH_030210b;clustalpid=42.61;queryCoverage=99.10;AlignmentGaps=14;pseudogene=0;gene_type=protein;bitscore=300.85;truncated=1;query=MAL7P1.79;alignmentLen=456;queryLen=446;improved=1;replaced_genes=PKH_030210;Name=PKH_030210b Pk_strainH_chr03 pkno_synteny_improved mRNA 155552 158109 . - . ID=rna_PKH_030210b;truncated=1;pseudogene=0;Name=rna_PKH_030210b;Parent=PKH_030210b Pk_strainH_chr03 pkno_synteny_improved CDS 157863 158109 . - 0 ID=cds_PKH_030210b-1;truncated=1;pseudogene=0;Name=cds_PKH_030210b-1;Parent=rna_PKH_030210b Pk_strainH_chr03 pkno_synteny_improved CDS 157456 157714 . - 1 ID=cds_PKH_030210b-2;truncated=1;pseudogene=0;Name=cds_PKH_030210b-2;Parent=rna_PKH_030210b Pk_strainH_chr03 pkno_synteny_improved CDS 157196 157345 . - 2 ID=cds_PKH_030210b-3;truncated=1;pseudogene=0;Name=cds_PKH_030210b-3;Parent=rna_PKH_030210b Pk_strainH_chr03 pkno_synteny_improved CDS 156909 157002 . - 2 ID=cds_PKH_030210b-4;truncated=1;pseudogene=0;Name=cds_PKH_030210b-4;Parent=rna_PKH_030210b Pk_strainH_chr03 pkno_synteny_improved CDS 156555 156764 . - 0 ID=cds_PKH_030210b-5;truncated=1;pseudogene=0;Name=cds_PKH_030210b-5;Parent=rna_PKH_030210b Pk_strainH_chr03 pkno_synteny_improved CDS 156270 156424 . - 0 ID=cds_PKH_030210b-6;truncated=1;pseudogene=0;Name=cds_PKH_030210b-6;Parent=rna_PKH_030210b Pk_strainH_chr03 pkno_synteny_improved CDS 155888 155987 . - 2 ID=cds_PKH_030210b-7;truncated=1;pseudogene=0;Name=cds_PKH_030210b-7;Parent=rna_PKH_030210b Pk_strainH_chr03 pkno_synteny_improved CDS 155552 155716 . - 0 ID=cds_PKH_030210b-8;truncated=1;pseudogene=0;Name=cds_PKH_030210b-8;Parent=rna_PKH_030210b Pk_strainH_chr03 pkno_synteny_improved gene 158478 159576 . - . ID=PKH_030210a;clustalpid=58.38;queryCoverage=98.98;AlignmentGaps=0;pseudogene=0;gene_type=protein;bitscore=184.47;truncated=0;query=MAL7P1.78;alignmentLen=195;queryLen=197;improved=1;replaced_genes=PKH_030210;Name=PKH_030210a Pk_strainH_chr03 pkno_synteny_improved mRNA 158478 159576 . - . ID=rna_PKH_030210a;truncated=0;pseudogene=0;Name=rna_PKH_030210a;Parent=PKH_030210a Pk_strainH_chr03 pkno_synteny_improved CDS 159366 159576 . - 0 ID=cds_PKH_030210a-1;truncated=0;pseudogene=0;Name=cds_PKH_030210a-1;Parent=rna_PKH_030210a Pk_strainH_chr03 pkno_synteny_improved CDS 159175 159264 . - 1 ID=cds_PKH_030210a-2;truncated=0;pseudogene=0;Name=cds_PKH_030210a-2;Parent=rna_PKH_030210a Pk_strainH_chr03 pkno_synteny_improved CDS 158854 158975 . - 1 ID=cds_PKH_030210a-3;truncated=0;pseudogene=0;Name=cds_PKH_030210a-3;Parent=rna_PKH_030210a Pk_strainH_chr03 pkno_synteny_improved CDS 158651 158722 . - 0 ID=cds_PKH_030210a-4;truncated=0;pseudogene=0;Name=cds_PKH_030210a-4;Parent=rna_PKH_030210a Pk_strainH_chr03 pkno_synteny_improved CDS 158478 158528 . - 0 ID=cds_PKH_030210a-5;truncated=0;pseudogene=0;Name=cds_PKH_030210a-5;Parent=rna_PKH_030210a Pk_strainH_chr11 pkno_synteny_improved gene 1220098 1224633 . + . ID=PKH_112480a;clustalpid=22.60;query=PFF1195c;improved=1;replaced_genes=PKH_112480;gene_type=protein;Name=PKH_112480a Pk_strainH_chr11 pkno_synteny_improved mRNA 1220098 1224633 . + . ID=mrna_PKH_112480a;Name=mrna_PKH_112480a;Parent=PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1220098 1220167 . + . ID=cds_PKH_112480a-1;Name=cds_PKH_112480a-1;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1220344 1220373 . + . ID=cds_PKH_112480a-2;Name=cds_PKH_112480a-2;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1220665 1220694 . + . ID=cds_PKH_112480a-3;Name=cds_PKH_112480a-3;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1220849 1220878 . + . ID=cds_PKH_112480a-4;Name=cds_PKH_112480a-4;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1221143 1221217 . + . ID=cds_PKH_112480a-5;Name=cds_PKH_112480a-5;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1221739 1221777 . + . ID=cds_PKH_112480a-6;Name=cds_PKH_112480a-6;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1221875 1221901 . + . ID=cds_PKH_112480a-7;Name=cds_PKH_112480a-7;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1222064 1222206 . + . ID=cds_PKH_112480a-8;Name=cds_PKH_112480a-8;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1222334 1222541 . + . ID=cds_PKH_112480a-9;Name=cds_PKH_112480a-9;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1222657 1222698 . + . ID=cds_PKH_112480a-10;Name=cds_PKH_112480a-10;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved CDS 1222907 1224633 . + . ID=cds_PKH_112480a-11;Name=cds_PKH_112480a-11;Parent=mrna_PKH_112480a Pk_strainH_chr11 pkno_synteny_improved gene 1225426 1226363 . + . ID=PKH_112480b;clustalpid=34.75;query=PFF1190c;improved=1;replaced_genes=PKH_112480;gene_type=protein;Name=PKH_112480b Pk_strainH_chr11 pkno_synteny_improved mRNA 1225426 1226363 . + . ID=mrna_PKH_112480b;Name=mrna_PKH_112480b;Parent=PKH_112480b Pk_strainH_chr11 pkno_synteny_improved CDS 1225426 1225848 . + . ID=cds_PKH_112480b-1;Name=cds_PKH_112480b-1;Parent=mrna_PKH_112480b Pk_strainH_chr11 pkno_synteny_improved CDS 1226199 1226363 . + . ID=cds_PKH_112480b-2;Name=cds_PKH_112480b-2;Parent=mrna_PKH_112480b Pk_strainH_chr12 pkno_synteny_improved gene 1402877 1409126 . + . ID=PKH_123340;clustalpid=22.39;query=PF14_0686;improved=1;replaced_genes=PKH_123340%2CPKH_123350;gene_type=protein;Name=PKH_123340 Pk_strainH_chr12 pkno_synteny_improved mRNA 1402877 1409126 . + . ID=mrna_PKH_123340;Name=mrna_PKH_123340;Parent=PKH_123340 Pk_strainH_chr12 pkno_synteny_improved CDS 1402877 1404646 . + . ID=cds_gw_PKH_123340-2;Name=cds_gw_PKH_123340-2;Parent=mrna_PKH_123340 Pk_strainH_chr12 pkno_synteny_improved CDS 1404996 1409126 . + . ID=cds_gw_PKH_123340-3;Name=cds_gw_PKH_123340-3;Parent=mrna_PKH_123340 Pk_strainH_chr14 pkno_synteny_improved gene 2688252 2688458 . + . ID=PKH_145930a;clustalpid=57.97;queryCoverage=100.00;AlignmentGaps=1;pseudogene=0;gene_type=protein;bitscore=84.09;truncated=1;query=PFL2025w;alignmentLen=69;queryLen=68;improved=1;replaced_genes=PKH_145930;Name=PKH_145930a Pk_strainH_chr14 pkno_synteny_improved mRNA 2688252 2688458 . + . ID=rna_PKH_145930a;truncated=1;pseudogene=0;Name=rna_PKH_145930a;Parent=PKH_145930a Pk_strainH_chr14 pkno_synteny_improved CDS 2688252 2688458 . + 0 ID=cds_PKH_145930a-1;truncated=1;pseudogene=0;Name=cds_PKH_145930a-1;Parent=rna_PKH_145930a Pk_strainH_chr14 pkno_synteny_improved gene 2688745 2690640 . + . ID=PKH_145930b;clustalpid=50.45;queryCoverage=100.00;AlignmentGaps=21;pseudogene=0;gene_type=protein;bitscore=723.60;truncated=0;query=PFL2030w;alignmentLen=660;queryLen=639;improved=1;replaced_genes=PKH_145930;Name=PKH_145930b Pk_strainH_chr14 pkno_synteny_improved mRNA 2688745 2690640 . + . ID=rna_PKH_145930b;truncated=0;pseudogene=0;Name=rna_PKH_145930b;Parent=PKH_145930b Pk_strainH_chr14 pkno_synteny_improved CDS 2688745 2690640 . + 0 ID=cds_PKH_145930b-1;truncated=0;pseudogene=0;Name=cds_PKH_145930b-1;Parent=rna_PKH_145930b Pk_strainH_chr13 pkno_synteny_improved gene 140867 141801 . + . ID=PFL0245w_ortholog;truncated=1;query=PFL0245w;improved=1;replaced_genes=PKH_130340;Name=PKH_130340;gene_type=protein Pk_strainH_chr13 pkno_synteny_improved mRNA 140867 141801 . + . ID=rna_PFL0245w_ortholog;truncated=1;Parent=PFL0245w_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 141001 141066 . + 1 ID=cds_PFL0245w_ortholog-2;truncated=1;Parent=rna_PFL0245w_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 141685 141801 . + 0 ID=cds_PFL0245w_ortholog-5;truncated=1;Parent=rna_PFL0245w_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 141286 141332 . + 1 ID=cds_PFL0245w_ortholog-3;truncated=1;Parent=rna_PFL0245w_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 141452 141505 . + 0 ID=cds_PFL0245w_ortholog-4;truncated=1;Parent=rna_PFL0245w_ortholog Pk_strainH_chr13 pkno_synteny_improved CDS 140867 140903 . + 0 ID=cds_PFL0245w_ortholog-1;truncated=1;Parent=rna_PFL0245w_ortholog Pk_strainH_chr09 pkno_synteny_improved gene 184769 188042 . + . ID=PKH_090440;clustalpid=54.33;query=PF11_0084;improved=1;replaced_genes=PKH_090440%2CPKH_090450;gene_type=protein;Name=PKH_090440 Pk_strainH_chr09 pkno_synteny_improved mRNA 184769 188042 . + . ID=mrna_PKH_090440;Name=mrna_PKH_090440;Parent=PKH_090440 Pk_strainH_chr09 pkno_synteny_improved CDS 184769 184859 . + . ID=cds_gw_PKH_090440-3;Name=cds_gw_PKH_090440-3;Parent=mrna_PKH_090440 Pk_strainH_chr09 pkno_synteny_improved CDS 185082 185411 . + . ID=cds_gw_PKH_090440-4;Name=cds_gw_PKH_090440-4;Parent=mrna_PKH_090440 Pk_strainH_chr09 pkno_synteny_improved CDS 185687 185785 . + . ID=cds_gw_PKH_090440-5;Name=cds_gw_PKH_090440-5;Parent=mrna_PKH_090440 Pk_strainH_chr09 pkno_synteny_improved CDS 185992 186047 . + . ID=cds_gw_PKH_090440-6;Name=cds_gw_PKH_090440-6;Parent=mrna_PKH_090440 Pk_strainH_chr09 pkno_synteny_improved CDS 186209 186349 . + . ID=cds_gw_PKH_090440-7;Name=cds_gw_PKH_090440-7;Parent=mrna_PKH_090440 Pk_strainH_chr09 pkno_synteny_improved CDS 186526 186588 . + . ID=cds_down_PKH_090440-8;Name=cds_down_PKH_090440-8;Parent=mrna_PKH_090440 Pk_strainH_chr09 pkno_synteny_improved CDS 186774 186850 . + . ID=cds_down_PKH_090440-9;Name=cds_down_PKH_090440-9;Parent=mrna_PKH_090440 Pk_strainH_chr09 pkno_synteny_improved CDS 187001 188042 . + . ID=cds_down_PKH_090440-10;Name=cds_down_PKH_090440-10;Parent=mrna_PKH_090440