About the Authors
- Xiao-yong Li
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Contributed equally to this work with: Xiao-yong Li, Stewart MacArthur
Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Stewart MacArthur
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Contributed equally to this work with: Xiao-yong Li, Stewart MacArthur
Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Richard Bourgon
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Current address: EMBL-EBI, Hinxton, Cambridgeshire, United Kingdom
Affiliation Statistics Department, University of California Berkeley, Berkeley, California, United States of America
- David Nix
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Current address: Huntsman Cancer Institute, University of Utah, Salt Lake City, Utah, United States of America
Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Daniel A Pollard
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Affiliation Biophysics Graduate Group, University of California Berkeley, Berkeley, California, United States of America
- Venky N Iyer
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Affiliation Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, California, United States of America
- Aaron Hechmer
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Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Lisa Simirenko
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Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Mark Stapleton
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Affiliation Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Cris L. Luengo Hendriks
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Affiliation Biophysics Graduate Group, University of California Berkeley, Berkeley, California, United States of America
- Hou Cheng Chu
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Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Nobuo Ogawa
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Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- William Inwood
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Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Victor Sementchenko
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Affiliation Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Amy Beaton
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Affiliation Biophysics Graduate Group, University of California Berkeley, Berkeley, California, United States of America
- Richard Weiszmann
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Affiliation Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Susan E Celniker
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Affiliation Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- David W Knowles
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Affiliation Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
- Tom Gingeras
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Affiliation Affymetrix, Inc., Santa Clara, California, United States of America
- Terence P Speed
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Affiliation Statistics Department, University of California Berkeley, Berkeley, California, United States of America
- Michael B Eisen
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*To whom correspondence should be addressed. E-mail: mbeisen@lbl.gov (MBE); mdbiggin@lbl.gov (MDB)
¶These authors are joint senior authors on this work.
Affiliations Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America , Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, California, United States of America , Center for Integrative Genomics, University of California Berkeley, Berkeley, California, United States of America , California Institute for Quantitative Biosciences, Berkeley, California, United States of America
- Mark D Biggin
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*To whom correspondence should be addressed. E-mail: mbeisen@lbl.gov (MBE); mdbiggin@lbl.gov (MDB)
¶These authors are joint senior authors on this work.
Affiliation Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
Competing Interests
The authors have declared that no competing interests exist.
Author Contributions
XL, SM, MBE, and MDB conceived and designed the experiments and analyses and wrote the paper. XL, HCC, WI performed the experiments. XL, SM, RB. DN, DAP, VNI, AH, CLLH, MBE, and MDB analyzed the data. DAP, VNI, AH, LS, MS, CLLH, HCC, NO, WI, VS, AB, RW, SEC, DWK, TG, TPS, MBE, and MDB contributed reagents/materials/analysis tools.