chromosome start end distance gene symbol biotype mRNA pvalue mRNA phase #E1 #E1-E2 conservation ZT2 ZT6 ZT10 ZT14 ZT18 ZT22 chr18 40467871 40467921 -49747 ENSMUST00000145732 lincRNA NA NA 0 0 0 226 250 171 177 114 205 chr11 98644730 98644780 -8108 Nr1d1 protein_coding 0.00245800489848959 5.85 1 1 1 239 335 238 89 23 64 chr11 68908356 68908406 -338 Per1 protein_coding 0.0276212817635928 11.19 2 0 1 243 270 190 75 19 159 chr7 52963048 52963098 -186 Dbp retained_intron 0.00133675431703184 9.05 2 1 1 226 268 215 76 13 109 chr14 19071183 19071233 337 Nr1d2 retained_intron 0.00437705533460028 9.58 2 0 1 188 285 204 89 18 79 chr11 98636639 98636689 -17 Nr1d1 protein_coding 0.00245800489848959 5.85 3 0 1 208 242 187 77 13 85 chr11 98635135 98635185 1487 Nr1d1 protein_coding 0.00245800489848959 5.85 1 1 1 193 200 125 69 14 120 chr11 68908640 68908690 -54 Per1 protein_coding 0.0276212817635928 11.19 0 0 1 176 215 146 56 10 109 chr3 95686179 95686229 -53 Gm129 protein_coding 0.0202997070855071 10.83 1 1 1 156 226 180 55 8 70 chr11 90279481 90279531 -27275 Hlf protein_coding 0.00347982362518568 12.57 0 1 0.985 122 212 153 64 23 84 chr1 93355876 93355926 6 Per2 protein_coding 0.0032953809358429 15.09 0 1 1 135 177 167 77 22 74 chr3 95686563 95686613 -437 Gm129 protein_coding 0.0202997070855071 10.83 1 0 0.996 125 258 156 50 4 48 chr7 52960315 52960365 -118 Dbp protein_coding 0.00133675431703184 9.05 1 0 0.984 95 252 159 63 15 55 chr15 81641369 81641419 -482 Tef protein_coding 0.000118217645722963 11.4 0 1 1 124 202 153 62 16 68 chr15 81641672 81641722 -179 Tef protein_coding 0.000118217645722963 11.4 0 1 1 159 159 142 53 9 81 chr2 92264001 92264051 8523 Cry2 processed_transcript 0.194449750225981 12.05 0 0 1 161 158 142 50 10 59 chr3 94175706 94175756 -985 Rorc protein_coding 0.00212814248234893 19.67 2 0 1 132 137 112 35 7 113 chr5 149806877 149806927 -103 Katnal1 processed_transcript 0.0261411873465676 6.82 1 0 0.999 94 155 129 76 9 40 chr19 23210285 23210335 920 ENSMUST00000058189 protein_coding NA NA 0 0 1 126 216 73 30 8 32 chr2 92274369 92274419 -194 Cry2 protein_coding 0.194449750225981 12.05 0 0 1 110 133 116 49 10 64 chr16 8829424 8829474 -745 1810013L24Rik protein_coding NA NA 1 1 0.908 84 176 121 34 8 39 chr11 98635465 98635515 1157 Nr1d1 protein_coding 0.00245800489848959 5.85 2 0 1 110 112 105 48 6 69 chr1 174240290 174240340 -1587 Igsf8 protein_coding 0.222506859179462 7.43 1 0 0.346 108 114 109 51 14 46 chr6 94949235 94949285 101041 ENSMUST00000083129 snRNA NA NA 2 0 0.094 134 131 43 17 7 109 chr15 84753380 84753430 -418 Nup50 protein_coding 0.0525567693850681 9.71 1 1 0.42 87 181 100 31 4 18 chr11 98636962 98637012 -340 Nr1d1 protein_coding 0.00245800489848959 5.85 1 0 1 115 116 88 46 10 39 chr10 84647838 84647888 -65 Cry1 protein_coding 0.0183383821940144 18.68 2 0 1 106 134 76 42 10 42 chr17 8541935 8541985 8689 Prr18 protein_coding 0.0521534215679535 18.12 2 0 0.188 143 115 61 20 13 53 chr1 88255374 88255424 -252 ENSMUST00000116471 pseudogene NA NA 2 0 0.999 120 148 67 19 2 40 chr2 126378656 126378706 538 Slc27a2 protein_coding 0.181186104608734 13.94 0 1 0.918 112 96 73 58 9 48 chr7 52961389 52961439 420 Dbp protein_coding 0.00133675431703184 9.05 0 1 1 66 146 99 51 5 28 chr15 84753615 84753665 -183 Nup50 protein_coding 0.0525567693850681 9.71 0 0 0.398 85 160 98 24 4 18 chr6 108609423 108609473 -1175 Bhlhe40 protein_coding 0.00980338467028005 12.81 1 1 1 71 145 103 33 8 25 chr9 42280331 42280381 -8 Tbcel protein_coding 0.0146484092272636 4.46 2 0 1 133 121 54 31 4 42 chr9 43894103 43894153 1125 Usp2 protein_coding 0.00467964559120413 11.64 0 0 1 85 112 94 40 14 40 chr6 145814862 145814912 -809 Bhlhe41 protein_coding 0.129685992170396 22.5 0 1 1 61 154 91 44 7 24 chr4 133466678 133466728 -22994 Rps6ka1 protein_coding 0.0258917067497433 6.26 0 0 0.298 101 133 72 34 13 27 chr7 56607465 56607515 -12962 Nav2 protein_coding 0.120754177593073 1.06 0 0 0.897 99 166 60 28 7 20 chr5 113582309 113582359 10037 2900026A02Rik protein_coding 0.0442860056114222 7.03 1 0 0.939 77 106 97 32 17 37 chr2 167829185 167829235 -6819 ENSMUST00000142374 processed_transcript NA NA 1 0 0.022 100 145 50 19 8 42 chr15 82184693 82184743 -48 Ndufa6 protein_coding 0.71342104920939 1.15 0 0 0.8 74 128 90 32 8 29 chr4 34830211 34830261 -27 Zfp292 protein_coding 0.171017633905487 12.25 1 0 1 105 162 46 15 4 27 chr15 58830962 58831012 65622 Ndufb9 protein_coding 0.138715989842778 3.22 0 1 0.063 74 126 79 33 5 32 chr2 29478949 29478999 3684 Rapgef1 protein_coding 0.055698389858411 8.65 0 1 0.756 91 66 89 34 12 56 chr8 126789981 126790031 -28997 Usp10 processed_transcript 0.00580440237360566 10.93 2 0 0.26 88 89 73 38 6 51 chr7 35019183 35019233 -114 ENSMUST00000140881 processed_transcript NA NA 1 0 0.128 76 108 97 28 10 25 chr9 66359612 66359662 2759 Fbxl22 protein_coding NA NA 2 0 1 106 67 74 45 7 45 chr3 138105697 138105747 -406 Adh5 protein_coding 0.561818476294694 11.81 3 0 0.277 105 82 71 27 6 51 chr4 128624066 128624116 10842 ENSMUST00000154515 processed_transcript NA NA 1 1 0.414 94 122 57 27 5 34 chr5 136150838 136150888 408 Por protein_coding 0.00539808694215799 13.63 0 1 0.906 87 99 75 34 19 25 chr19 36806032 36806082 5086 Ppp1r3c protein_coding 0.00205981940848371 21.67 0 1 0.112 103 108 55 27 9 35 chr6 90413726 90413776 1181 Klf15 protein_coding 0.0493188930731104 11.24 0 1 1 64 128 78 30 13 23 chr1 64789541 64789591 -5242 Fzd5 protein_coding 0.797794011241999 21.67 1 1 0.705 82 69 96 38 12 36 chr5 93015101 93015151 14563 Fam47e protein_coding 0.0681566565861701 15.47 0 1 0.078 79 83 79 33 15 42 chr13 53070213 53070263 6204 Nfil3 protein_coding 0.00040445455252189 22 3 0 0.704 97 87 53 24 7 63 chr9 21172128 21172178 -234 Ilf3 protein_coding 0.103750515302425 5.38 2 0 0.351 86 137 61 18 5 23 chr8 79568908 79568958 -82979 Nr3c2 processed_transcript 0.0133492519131299 6.98 0 0 0.038 101 90 72 17 4 43 chr3 41368526 41368576 8897 Phf17 protein_coding 0.0187572877903138 7.45 0 1 1 81 91 86 32 1 35 chr11 118127158 118127208 179 Usp36 retained_intron 0.0346705644769682 11.47 0 0 0.145 75 114 71 30 13 23 chr8 87502750 87502800 -447 Junb protein_coding 0.0955733536687706 5.21 0 0 1 70 94 90 41 13 17 chr11 68912249 68912299 -176 Per1 protein_coding 0.0276212817635928 11.19 1 0 1 69 90 91 25 5 44 chr15 88681011 88681061 -11869 Pim3 protein_coding 0.00171830351914160 10.22 1 0 0.417 83 70 87 29 2 47 chr7 127986305 127986355 -15 Eef2k protein_coding 0.107460116199303 9.34 2 0 0.489 66 107 84 28 11 20 chr1 93356248 93356298 -366 Per2 protein_coding 0.0032953809358429 15.09 0 0 0.134 56 105 70 35 11 34 chr2 11457128 11457178 13819 Gm10851 protein_coding NA NA 2 0 1 72 121 63 27 3 25 chr7 87591303 87591353 17232 ENSMUST00000118776 processed_pseudogene NA NA 0 0 0.441 93 100 44 21 5 48 chr10 6372778 6372828 594 Mthfd1l protein_coding 0.0758985462569961 12.97 0 1 0.911 82 79 75 38 5 32 chr1 187027867 187027917 -229 Rab3gap2 protein_coding 0.142902222850106 8.87 2 0 0.103 83 104 61 31 6 20 chr6 116287962 116288012 -55 March8 protein_coding 0.0882922786398682 11.89 1 0 0.889 86 132 43 23 4 16 chr15 58831179 58831229 65839 Ndufb9 protein_coding 0.138715989842778 3.22 0 0 0.172 53 122 67 22 6 32 chr15 64176758 64176808 -16412 Gm10926 protein_coding NA NA 1 1 1 72 100 63 27 9 31 chr7 134397715 134397765 6483 Dctpp1 protein_coding 0.177608456590748 12.15 1 0 1 71 78 70 41 12 28 chr11 94410278 94410328 -197 Rsad1 processed_transcript 0.0254372256343818 8.11 1 0 1 64 94 63 37 6 34 chr6 71185282 71185332 26917 Smyd1 processed_transcript 0.00144779576889649 8.62 2 0 1 94 112 40 15 10 25 chr7 104572473 104572523 -6258 Thrsp protein_coding 0.00984038984859858 15.78 1 0 0.195 64 76 73 34 10 39 chr6 91549142 91549192 83126 Lsm3 retained_intron 0.739125294928476 12.37 0 2 0.682 58 101 91 24 4 17 chr17 29533863 29533913 20442 Fgd2 processed_transcript 0.193580781004999 3.64 2 0 1 104 77 44 20 5 44 chr19 23564396 23564446 -41533 Mamdc2 protein_coding 0.511329959350358 11.44 2 0 0.074 75 58 76 34 6 43 chr7 38870205 38870255 14158 Ccne1 processed_transcript 0.161978741533970 11.47 2 0 0.999 80 144 30 12 7 18 chr7 106331520 106331570 -318 Dgat2 protein_coding 0.0305562844867885 15.09 1 0 0.597 83 86 55 21 5 41 chr2 3249853 3249903 37 Rpp38 protein_coding NA NA 1 0 0.544 62 118 59 25 2 24 chr4 149506866 149506916 3836 Slc2a5 processed_transcript 0.0121892901685412 7.72 1 0 0.492 75 118 58 20 4 14 chr19 42203806 42203856 -314 Avpi1 protein_coding 0.892716388450065 6.87 1 0 1 43 98 93 24 10 21 chr4 132478642 132478692 -194 Fam76a protein_coding 0.0132566519041376 9.87 0 1 1 42 122 85 27 2 10 chr5 139848219 139848269 -2545 ENSMUST00000083659 miRNA 0.352185875671662 0.59 0 1 0.87 59 114 64 18 14 19 chr15 101934668 101934718 1327 Tenc1 protein_coding 0.00508098547633972 7 1 0 0.938 71 65 80 33 10 29 chr19 46577302 46577352 -55 Gm9798 protein_coding 0.176399924854207 22.33 0 1 1 62 93 68 22 7 32 chr15 81353726 81353776 56948 Rbx1 protein_coding 0.214040956614742 8.61 1 0 0.994 73 118 41 17 5 29 chr5 73865834 73865884 2733 ENSMUST00000119247 processed_pseudogene NA NA 0 1 0.065 77 84 60 25 6 29 chr5 77380117 77380167 48 Ppat retained_intron 0.0505102630348035 11.35 0 1 1 58 81 71 35 8 25 chr7 54101112 54101162 -72 Ldha protein_coding 0.362325393200288 7.23 0 0 1 79 90 41 25 3 40 chr1 155544857 155544907 30263 Rgs8 processed_transcript 0.459890940923889 10.72 2 0 0.979 44 121 61 24 9 17 chr10 11000761 11000811 11 ENSMUST00000134889 lincRNA 0.969020643921256 21.44 0 1 0.436 48 93 79 32 6 16 chr10 79785802 79785852 44 Pcsk4 retained_intron 0.00635251736555203 11.81 1 0 1 59 128 43 19 7 18 chr1 55109391 55109441 -198 Coq10b protein_coding 0.0020187746340226 11.34 0 0 0.341 33 101 93 25 6 15 chr11 98634375 98634425 2247 Nr1d1 protein_coding 0.00245800489848959 5.85 2 0 1 88 55 66 25 3 36 chr6 55126068 55126118 -1056 Inmt protein_coding 0.578744561239428 18.02 0 0 0.157 64 84 62 26 6 30 chr10 84648114 84648164 -341 Cry1 protein_coding 0.0183383821940144 18.68 1 0 1 77 83 49 28 3 32 chr12 106225262 106225312 11600 4831426I19Rik protein_coding 0.341656033250627 10.4 1 1 0.146 55 74 57 21 16 47 chr7 134397915 134397965 6283 Dctpp1 protein_coding 0.177608456590748 12.15 0 0 1 72 58 67 37 11 23 chr15 76528412 76528462 1274 Gpt protein_coding 0.146890043019270 15.7 1 0 0.999 63 72 72 26 8 26 chr6 124624827 124624877 11619 Lpcat3 retained_intron 0.0241993629351666 5.59 1 1 0.253 63 85 63 18 2 32 chr4 57125245 57125295 7662 Epb4.1l4b processed_transcript 0.000426245670782354 10.02 0 0 0.213 95 56 50 19 11 31 chr5 45841169 45841219 10 Qdpr protein_coding 0.0072062619813781 4.58 1 0 0.994 65 94 43 23 8 29 chr6 146219749 146219799 23032 Itpr2 processed_transcript 0.0368303033076469 17.75 1 0 1 41 76 81 30 9 25 chr9 55278148 55278198 57147 Etfa processed_transcript 0.983031986683986 9.8 1 0 1 76 125 25 20 3 13 chr11 69814013 69814063 -59 Dvl2 protein_coding 0.0184438802505043 10.93 3 0 1 80 79 55 16 6 26 chr2 58607416 58607466 88 Upp2 protein_coding 0.0125276939486327 11.98 1 1 0.978 56 99 58 24 6 18 chr7 148662232 148662282 -42 Tspan4 protein_coding 1.68276342795532e-05 15.47 0 1 0.997 59 75 72 22 3 30 chr19 7568854 7568904 -92 Atl3 protein_coding 0.169277312542831 7.3 2 0 0.238 57 88 55 31 10 20 chr8 118243164 118243214 -11495 Maf protein_coding 0.221943787156832 11.02 2 0 0.125 83 69 42 24 6 36 chr9 21171921 21171971 -441 Ilf3 protein_coding 0.103750515302425 5.38 1 0 0.48 72 102 51 15 4 16 chr19 5457540 5457590 -58 ENSMUST00000053754 pseudogene 0.00113569080969798 10.53 1 1 1 41 99 72 31 4 13 chr6 91107153 91107203 20 Hdac11 retained_intron 0.0853138213394557 6.23 1 1 0.942 42 98 56 32 9 22 chr3 89577177 89577227 -40 4632404H12Rik protein_coding 0.0330106290609845 6.9 1 0 1 45 118 49 24 3 19 chr10 79397175 79397225 4031 Arid3a protein_coding 0.616225233424652 6.01 1 0 1 64 69 53 24 8 40 chr4 124371038 124371088 -219 Utp11l protein_coding 0.44598800472687 8.94 2 0 1 55 96 45 25 4 32 chr9 75257917 75257967 -49 ENSMUST00000132931 lincRNA 0.962467596956584 0.93 2 0 1 55 81 64 28 8 21 chr11 69232389 69232439 -5237 Kdm6b protein_coding 0.586450453561625 12.09 0 0 1 58 77 50 29 8 34 chr5 118695237 118695287 26 2410131K14Rik protein_coding 0.133933795520950 22.23 1 0 0.858 46 107 51 22 10 19 chr8 123071586 123071636 -10154 1700016A09Rik protein_coding 0.543975020395667 18.86 1 0 0.454 50 61 67 26 15 34 chr10 93003282 93003332 -70 Ccdc38 protein_coding 0.458850377663841 13.84 1 0 0.894 72 78 47 25 6 25 chr13 113777859 113777909 -126 Ccno protein_coding 0.371369069857607 5.26 0 0 0.971 49 96 63 25 2 17 chr18 84545953 84546003 35834 Zfp407 processed_transcript 0.152134154194709 20.55 2 0 0.005 60 81 63 15 3 30 chr7 71218862 71218912 -79844 Trpm1 protein_coding 0.160702632394354 18.35 0 0 0 47 36 55 43 19 51 chr6 142419817 142419867 1787 Gys2 protein_coding 0.0020225325126973 12.68 0 0 0.237 47 81 55 27 7 33 chr11 44332140 44332190 -301 Rnf145 protein_coding 7.40269381450139e-05 10.38 0 0 1 51 103 54 24 3 14 chr17 87682208 87682258 0 Ttc7 processed_transcript 0.0593949430335338 3.08 0 0 0.997 48 85 66 17 8 25 chr2 75541823 75541873 698 Nfe2l2 processed_transcript 0.26740990506123 12.32 0 0 0.988 67 76 51 32 3 19 chr3 41368960 41369010 9331 Phf17 protein_coding 0.0187572877903138 7.45 2 0 1 74 122 20 11 2 18 chr7 28271945 28271995 41 Sertad1 protein_coding 0.0362025501893899 8.95 0 0 1 51 75 62 27 9 23 chr14 51550754 51550804 -253 Tmem55b protein_coding 0.0130200427219371 5.81 1 0 1 63 80 46 20 9 29 chr4 149957766 149957816 9385 protein_coding NA NA 3 0 0.013 55 77 51 30 10 21 chr7 71062755 71062805 1037 ENSMUST00000126152 lincRNA NA NA 1 1 0.048 46 56 76 22 16 27 chr13 43400246 43400296 -730 Gfod1 protein_coding 0.0153383347716833 0.76 1 0 0.02 89 70 32 22 10 20 chr17 3036395 3036445 8313 ENSMUST00000089221 retrotransposed 0.135196639277901 21.92 0 0 0 43 31 60 36 15 58 chr10 80139389 80139439 -376 Mknk2 protein_coding 0.0497170251157431 11.54 1 0 0.025 55 86 57 21 6 17 chr9 107490414 107490464 390 Ifrd2 protein_coding 0.051292971773671 12.04 3 0 1 59 74 54 24 11 19 chr18 68221900 68221950 129014 D18Ertd653e protein_coding 0.200250890013865 4.5 1 1 0.81 55 87 55 24 0 20 chr3 101609762 101609812 30359 BC037703 protein_coding 0.475698043596931 16.7 2 0 0.02 70 107 28 11 4 19 chr4 131472464 131472514 -1058 ENSMUST00000132111 processed_transcript 0.983558991623738 16.27 2 0 0.368 61 90 46 15 4 23 chr15 3945735 3945785 -14 AW549877 protein_coding 0.71290939452198 18.21 0 1 1 53 91 44 18 3 30 chr2 129024031 129024081 -444 Slc20a1 protein_coding 0.00778455294449942 12.11 2 0 1 57 92 49 17 7 16 chr3 87709931 87709981 -510 Hdgf protein_coding 0.156147882472918 10.87 1 0 0.095 49 91 55 12 8 23 chr12 16660480 16660530 199 Ntsr2 protein_coding 0.739202741170566 17.75 0 1 1 68 71 47 26 4 22 chr3 3001810 3001860 -506195 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 43 33 53 43 20 45 chr14 47441903 47441953 -11 Gmfb protein_coding 0.323721899358962 5.88 1 0 1 40 103 55 13 3 23 chr16 8829812 8829862 -357 1810013L24Rik protein_coding NA NA 0 0 0.851 37 111 58 17 1 13 chr1 88929130 88929180 57348 Alppl2 protein_coding 0.654513487199337 18.8 1 0 0.967 70 84 32 23 8 18 chr7 71218628 71218678 -80078 Trpm1 protein_coding 0.160702632394354 18.35 0 0 0 38 30 48 43 29 46 chr9 21859346 21859396 -16105 ENSMUST00000128844 lincRNA 0.068686716065134 15.28 1 0 1 72 52 51 19 7 33 chr17 36106780 36106830 -110 Abcf1 protein_coding 0.0924800366945344 12.6 1 0 0.99 54 95 43 25 9 8 chr3 146252577 146252627 6974 Dnase2b protein_coding 0.0295525450266016 17.16 4 0 0.378 76 69 43 14 6 24 chr16 20672764 20672814 -7 Eif4g1 protein_coding 0.0345973380214766 8.64 3 0 1 56 102 27 20 4 23 chr17 66426414 66426464 -10 Ankrd12 retained_intron 0.0715011013362058 7.94 2 1 1 58 75 46 22 4 27 chr10 40219786 40219836 -70331 Slc22a16 protein_coding 0.828188839849819 12.48 2 0 1 50 58 64 26 4 27 chr1 182126160 182126210 -93 Cabc1 protein_coding 0.00052845624808172 1.26 0 0 0.999 52 97 40 13 6 19 chr3 121129000 121129050 -427 Cnn3 protein_coding 0.385574548799158 14.2 0 0 0.52 52 80 56 21 4 13 chr10 60283471 60283521 10833 Unc5b protein_coding 0.221436290753051 0.02 1 0 1 49 72 37 29 9 30 chr13 44401692 44401742 -424923 Jarid2 protein_coding 0.148670386587353 12.49 2 1 0.978 47 76 57 23 6 17 chr10 127382709 127382759 7497 ENSMUST00000158062 snoRNA NA NA 1 0 0.089 85 78 26 9 3 24 chr17 32250605 32250655 -13399 ENSMUST00000002868 protein_coding NA NA 2 0 0.066 47 92 51 18 6 11 chr8 76143110 76143160 22269 ENSMUST00000102244 miRNA NA NA 0 0 0 44 32 48 34 21 45 chr11 51570039 51570089 56 Sec24a protein_coding 0.0328068157981793 12.96 1 0 1 45 73 59 20 6 21 chr6 54710113 54710163 -56772 Znrf2 protein_coding 0.148774091628948 8.98 2 0 1 72 67 33 19 8 24 chr8 74945444 74945494 8382 ENSMUST00000120752 processed_pseudogene 0.182057524310778 12.35 1 0 0.995 56 60 60 22 12 13 chr4 139141717 139141767 10445 Iffo2 protein_coding 0.0279106093505533 6.85 1 0 0.026 49 56 58 19 7 33 chr17 5893255 5893305 6363 Snx9 protein_coding 0.0137981369282266 4.03 1 0 0.464 52 58 58 20 8 26 chr1 26744387 26744437 -107 4931408C20Rik protein_coding NA NA 0 0 0.829 39 56 25 50 20 31 chr6 145815234 145815284 -1181 Bhlhe41 protein_coding 0.129685992170396 22.5 1 0 1 32 93 43 18 11 24 chr10 75994380 75994430 42 Lss protein_coding 0.258750541761545 22.7 1 0 0.998 52 64 64 18 10 13 chr10 77472455 77472505 72 Pfkl protein_coding 0.462494836776421 5.35 0 1 0.988 50 71 56 20 6 18 chr16 18412057 18412107 1505 Comt1 protein_coding 0.0695712756119328 23.94 1 0 0.609 52 53 55 28 6 27 chr7 38869941 38869991 14422 Ccne1 processed_transcript 0.161978741533970 11.47 1 0 0.043 55 89 37 15 5 19 chr19 32830669 32830719 -1293 Pten protein_coding 0.184157079597635 13.22 1 0 1 47 82 51 21 9 9 chr3 101609481 101609531 30640 BC037703 protein_coding 0.475698043596931 16.7 0 1 1 61 88 32 13 4 20 chr7 6362894 6362944 -68 Olfr1344 protein_coding 0.994133110483955 5.76 1 0 0.43 66 50 43 19 8 32 chr16 45970475 45970525 -16789 Phldb2 protein_coding 0.502700645297639 4.92 2 0 0.18 44 75 61 14 6 18 chr18 61533746 61533796 23783 ENSMUST00000083601 miRNA NA NA 2 0 0.018 59 81 37 19 1 21 chr1 172815172 172815222 355 Dusp12 protein_coding 0.0592906158377278 1.99 1 0 1 53 70 51 22 4 17 chr4 123668034 123668084 64582 ENSMUST00000118389 processed_pseudogene NA NA 0 0 1 49 65 51 26 3 23 chr9 61154221 61154271 65003 Gm10655 protein_coding NA NA 2 0 0.112 63 60 41 20 6 27 chr11 118151445 118151495 24 Usp36 protein_coding 0.0346705644769682 11.47 1 0 1 64 77 41 13 4 17 chr1 180299194 180299244 -21731 ENSMUST00000083020 snRNA NA NA 1 0 0.114 41 74 57 15 9 19 chr10 80040726 80040776 -685 Klf16 protein_coding 0.109202043543791 9.13 1 0 0.988 40 98 46 14 7 10 chr5 136578198 136578248 -1541 Rasa4 protein_coding 0.783010407239637 11.4 0 1 1 53 78 40 21 4 18 chr5 138696673 138696723 -261 0910001L09Rik protein_coding 0.95096362856114 15.83 0 0 0.062 61 69 25 15 5 39 chr6 142400199 142400249 21405 Gys2 protein_coding 0.0020225325126973 12.68 2 0 1 44 78 56 21 4 11 chr11 6428785 6428835 -47 ENSMUST00000147762 processed_transcript NA NA 2 0 0.232 60 70 50 13 3 18 chr11 31724721 31724771 -222 ENSMUST00000134944 processed_transcript 0.143559209493947 7.15 1 0 0.133 45 94 35 14 3 23 chr19 36811253 36811303 -135 Ppp1r3c protein_coding 0.00205981940848371 21.67 0 1 0.894 51 89 36 16 7 15 chr5 125976234 125976284 -10260 Aacs retained_intron 0.0706426478982074 16.98 2 0 0.032 68 65 40 19 4 17 chr5 144670445 144670495 183 Aimp2 retained_intron 0.00992194316579293 12.29 1 0 1 45 75 48 17 4 24 chr6 145804344 145804394 9453 Bhlhe41 protein_coding 0.129685992170396 22.5 0 0 1 52 74 41 20 3 23 chr4 141297980 141298030 -4582 Agmat protein_coding 0.29221548512185 1.91 1 0 0.249 55 36 63 17 13 28 chr7 150943055 150943105 -190 Osbpl5 protein_coding 0.0276812653751416 13.76 1 0 0.013 33 70 60 21 6 22 chr15 38498331 38498381 -49335 Azin1 protein_coding 0.569989661895459 11.91 0 1 0.267 49 70 56 15 4 18 chr17 27076682 27076732 -284 Cuta protein_coding 0.667815847059104 16.44 1 0 0.989 47 83 44 19 4 15 chr5 111934351 111934401 -76205 C130026L21Rik protein_coding NA NA 1 0 0.118 74 54 24 21 5 32 chr10 77472062 77472112 465 Pfkl protein_coding 0.462494836776421 5.35 0 0 0.189 43 75 44 23 6 19 chr4 133467035 133467085 -23351 Rps6ka1 protein_coding 0.0258917067497433 6.26 0 0 0.014 56 52 45 25 4 27 chr9 119841726 119841776 4901 Gorasp1 protein_coding 0.47371907657697 14.08 0 0 1 69 60 46 14 5 15 chr11 55281713 55281763 -1449 G3bp1 protein_coding 0.563239087088603 0.1 1 0 0.319 92 64 17 12 5 19 chr6 124915247 124915297 36 Cops7a protein_coding 0.819771686851245 14.89 2 0 1 36 71 51 25 6 19 chr4 129419718 129419768 -196 Khdrbs1 retained_intron 0.22211154174164 6.87 2 0 1 34 89 51 19 5 9 chr1 26745062 26745112 -782 4931408C20Rik protein_coding NA NA 0 0 0.032 39 31 35 43 17 41 chr7 74807396 74807446 -4253 Ttc23 processed_transcript 0.976537814512228 18.81 2 0 0.983 67 79 14 7 8 31 chr17 27023119 27023169 -30892 Kifc1 protein_coding 0.37327066262365 1.21 1 0 0.026 54 77 30 18 5 22 chr13 39533812 39533862 420559 ENSMUST00000083322 snRNA NA NA 1 0 0 65 56 37 12 9 26 chr4 146894379 146894429 572 ENSMUST00000118377 processed_pseudogene NA NA 1 0 0 41 37 29 36 26 35 chr15 81230097 81230147 -3 St13 protein_coding 0.0522348782548019 17.7 1 0 1 51 53 37 24 8 31 chr5 122765116 122765166 12710 ENSMUST00000120513 processed_pseudogene NA NA 0 0 1 34 67 50 26 9 17 chr10 127058856 127058906 -677 Lrp1 protein_coding 0.290102208065119 6.08 0 0 1 56 67 35 11 10 24 chr10 79900873 79900923 -4506 Tcf3 protein_coding 0.103157643434971 3.77 0 1 0.871 39 48 73 18 3 21 chr8 128258201 128258251 88 2310079N02Rik protein_coding 0.0545839685948767 22.35 1 1 1 34 95 35 19 8 10 chr9 119892324 119892374 1427 Csrnp1 protein_coding 0.0399655595632328 9.79 0 2 1 29 108 33 12 7 12 chr10 41997942 41997992 -1406 Foxo3 protein_coding 0.0124161653623989 10.63 0 0 0.998 70 69 27 12 6 16 chr16 23337576 23337626 -20788 St6gal1 processed_transcript 3.25103490674872e-05 6.31 1 0 0.121 61 48 29 23 6 33 chr7 129164678 129164728 -2 Gga2 retained_intron 0.125286532479397 19.66 1 0 0.493 55 84 32 12 1 15 chr19 12869346 12869396 1235 Zfp91 protein_coding 0.194561215018698 15.4 1 0 1 62 56 29 19 7 26 chr6 72091331 72091381 43749 St3gal5 protein_coding 0.00259177168560592 13 1 1 0.14 48 68 29 13 7 33 chr6 31166715 31166765 1693 AB041803 protein_coding 0.0359894366809084 5.19 1 0 0.975 39 52 63 26 10 7 chr7 19703822 19703872 -130 protein_coding NA NA 2 0 0.701 58 66 32 11 11 19 chr7 139812218 139812268 -9811 Lhpp processed_transcript 0.00530982890915023 5.89 0 0 0.201 44 53 52 19 5 24 chr16 30065267 30065317 -142 Hes1 protein_coding 0.244193504400723 23.55 1 1 1 34 86 34 21 8 14 chr17 3035076 3035126 9632 ENSMUST00000089221 retrotransposed 0.135196639277901 21.92 0 0 0 34 29 52 29 23 30 chr9 121716816 121716866 2423 Ccdc13 retained_intron 0.851989498730253 18.01 0 1 0.7 50 41 59 24 5 17 chr19 6996881 6996931 -598 Esrra protein_coding 0.132907861767947 14.84 1 0 1 45 58 47 22 5 19 chr4 141510957 141511007 -873 Fhad1 processed_transcript 0.427369840422395 16.32 0 1 1 50 62 40 17 7 19 chr4 145743301 145743351 5683 1700029I01Rik protein_coding 0.96525694818934 10.85 1 0 0 23 54 34 27 20 37 chr4 146894598 146894648 353 ENSMUST00000118377 processed_pseudogene NA NA 0 0 0.353 39 28 35 37 23 33 chr7 71218357 71218407 -80349 Trpm1 protein_coding 0.160702632394354 18.35 0 0 0.018 40 15 39 41 21 39 chr11 77580214 77580264 3436 Myo18a protein_coding 0.0843850229105427 9.2 3 0 1 39 78 45 20 6 7 chr11 117457562 117457612 -14974 ENSMUST00000155384 processed_transcript 0.648843698809635 12.45 1 0 0.051 45 53 44 32 7 14 chr19 7131113 7131163 -162 Macrod1 protein_coding 0.529163343548705 17.42 1 0 0.999 47 59 46 16 7 20 chr4 11118363 11118413 -110 Ccne2 processed_transcript 0.501401592976332 14.46 1 0 1 66 58 19 20 7 24 chr7 71219090 71219140 -79616 Trpm1 protein_coding 0.160702632394354 18.35 0 0 0 37 24 47 34 9 43 chr17 3036002 3036052 8706 ENSMUST00000089221 retrotransposed 0.135196639277901 21.92 0 0 0 40 24 49 27 21 33 chr17 33918119 33918169 344 Angptl4 protein_coding 0.0129323602794654 8.64 1 0 1 56 63 32 20 6 17 chr4 139188226 139188276 9227 Aldh4a1 processed_transcript 0.201130792561301 3.66 0 0 0.158 51 48 39 22 3 30 chr8 122128990 122129040 107 Taf1c protein_coding 0.110192221829740 17.81 0 1 0.145 42 70 43 19 3 16 chr1 182781121 182781171 -136 BC031781 protein_coding 0.589948761232083 22.9 1 0 0.999 32 77 46 16 1 20 chr1 186648475 186648525 -2133 ENSMUST00000157934 miRNA NA NA 2 0 0.026 42 58 46 19 4 23 chr3 25444973 25445023 56 ENSMUST00000157320 rRNA NA NA 0 0 0.05 36 22 38 34 18 44 chr17 27069901 27069951 -146 Phf1 protein_coding 0.960907957292704 1.74 0 0 0.998 41 66 45 20 6 14 chr9 107490124 107490174 100 Ifrd2 protein_coding 0.051292971773671 12.04 0 0 1 35 57 58 18 5 18 chr11 95685527 95685577 -261 Phospho1 protein_coding 0.496468762215394 22.96 0 1 0.045 56 57 39 11 1 27 chr2 152186362 152186412 6862 ENSMUST00000075093 pseudogene 0.685243451495967 20.83 1 0 0.924 35 71 52 14 7 11 chr7 52829528 52829578 663 ENSMUST00000133678 retained_intron 0.0102335198327656 10.05 1 0 0.253 51 70 37 12 1 19 chr11 70796447 70796497 56 C1qbp protein_coding 0.38268547722047 12.52 2 0 0.999 59 54 28 22 8 19 chr11 117739320 117739370 -4550 Tha1 processed_transcript 0.702175034291913 12.84 0 2 0.013 20 83 50 14 7 16 chr17 47595486 47595536 -9536 AI661453 protein_coding 0.877631925466041 22.39 1 0 0.21 45 62 50 17 5 11 chr6 135118249 135118299 -41 Hebp1 protein_coding 0.194859969647909 5.53 1 0 0.14 66 41 47 17 1 17 chr7 129164451 129164501 205 Gga2 nonsense_mediated_decay 0.125286532479397 19.66 1 0 1 60 66 35 14 1 13 chr9 25268636 25268686 -20471 Eepd1 protein_coding 0.0661429533078632 4.7 0 1 0.97 43 63 40 28 4 11 chr17 46188477 46188527 -19184 Vegfa protein_coding 0.339416660569689 12.15 1 0 1 27 56 56 27 5 18 chr16 3246568 3246618 -2991 ENSMUST00000116737 miRNA NA NA 0 0 0.749 23 38 24 36 21 46 chr17 27076381 27076431 7 Cuta protein_coding 0.667815847059104 16.44 2 0 1 32 98 31 18 3 6 chr18 61517432 61517482 40097 ENSMUST00000083601 miRNA NA NA 0 1 0.019 33 47 49 31 13 15 chr1 85258548 85258598 2168 protein_coding NA NA 1 0 0.134 31 32 41 31 15 37 chr4 146893434 146893484 1517 ENSMUST00000118377 processed_pseudogene NA NA 0 0 0 38 30 28 40 12 39 chr9 48793111 48793161 -354 Usp28 protein_coding 0.24441710127832 3.6 1 0 0.767 64 63 32 17 2 9 chr10 77707563 77707613 -201 Trappc10 protein_coding 0.722233097617945 11.86 0 0 0.546 48 58 35 15 9 22 chr14 26313701 26313751 -33112 ENSMUST00000156682 processed_transcript NA NA 1 0 0.023 40 39 55 26 8 19 chr18 31864793 31864843 -54716 Ammecr1l protein_coding 0.035556691660632 9.7 0 1 0 40 58 45 24 3 17 chr19 32830915 32830965 -1047 Pten protein_coding 0.184157079597635 13.22 1 0 1 35 69 45 17 9 12 chr4 150059471 150059521 -6595 ENSMUST00000149065 processed_transcript NA NA 1 0 1 51 51 36 22 4 22 chr8 114250602 114250652 -3619 Bcar1 protein_coding 0.0810192891724406 7.34 0 0 1 46 58 33 16 8 25 chr9 107572780 107572830 -3075 Slc38a3 protein_coding 0.0664178050837555 9.3 0 1 1 25 68 49 20 7 17 chr17 3038561 3038611 6147 ENSMUST00000089221 retrotransposed 0.135196639277901 21.92 0 0 0 33 23 37 29 23 41 chr17 26852567 26852617 -3 A930001N09Rik protein_coding 0.223619078492713 11.56 1 0 1 57 56 32 14 4 23 chr4 145743519 145743569 5465 1700029I01Rik protein_coding 0.96525694818934 10.85 0 0 0 25 42 35 32 17 34 chr7 146101315 146101365 -138 Bnip3 processed_transcript 0.00595965705783453 12.74 0 0 0.999 33 78 37 16 7 14 chr13 48642138 48642188 -8522 ENSMUST00000083487 miRNA NA NA 1 0 0.058 42 62 43 18 4 16 chr15 68194868 68194918 -22042 ENSMUST00000083503 miRNA NA NA 1 0 1 52 53 39 13 9 19 chr17 29535234 29535284 21813 Fgd2 processed_transcript 0.193580781004999 3.64 2 0 0.917 32 74 39 18 7 15 chr4 140410382 140410432 -8714 Padi1 protein_coding 0.157910078765151 18.3 1 0 0.161 43 54 40 22 7 18 chr5 25005625 25005675 -1049 Mll3 protein_coding 0.0695635862209762 13.73 1 0 0.221 58 61 26 14 10 15 chr16 20674176 20674226 17 Eif4g1 protein_coding 0.0345973380214766 8.64 0 1 1 33 59 43 18 4 27 chr2 121274832 121274882 -74 Serf2 protein_coding 0.0530817550109812 19.95 1 0 1 41 82 40 11 1 8 chr8 87324465 87324515 -247 Nfix protein_coding 0.048247799342415 9.28 1 0 0.873 57 46 42 16 3 19 chr11 20353937 20353987 7547 ENSMUST00000119032 processed_pseudogene 0.0175183687788703 3.48 0 0 0.991 50 62 36 13 3 19 chr11 53817858 53817908 3583 Slc22a4 processed_transcript 0.398456230608732 19.98 0 1 0.996 46 34 49 23 11 20 chr14 63783791 63783841 12871 Fdft1 protein_coding 0.0103078298313467 0.07 1 0 0.959 43 54 45 17 4 20 chr1 88421662 88421712 -1624 Gm12504 protein_coding 0.180650077125489 19.38 1 0 0.513 36 60 42 16 6 22 chr4 59451565 59451615 -85 Susd1 protein_coding 0.0343171371318024 8.68 0 1 0.078 32 68 37 18 11 16 chr11 98907135 98907185 1080 Igfbp4 processed_transcript 0.00699200771797586 16.43 0 0 0.988 48 47 36 20 8 23 chr11 114712775 114712825 313 Gprc5c nonsense_mediated_decay 0.262786760372175 22.87 2 0 1 44 62 31 14 8 23 chr16 30067007 30067057 1598 Hes1 protein_coding 0.244193504400723 23.55 0 0 1 41 96 24 8 1 12 chr4 149166489 149166539 1014 ENSMUST00000119178 processed_pseudogene NA NA 1 0 0.623 35 28 55 26 13 24 chr7 148623234 148623284 271 Slc25a22 protein_coding 0.151228654129246 6.87 0 1 1 44 70 29 13 6 19 chr9 106270258 106270308 -680 Dusp7 protein_coding 0.74253340367633 20.59 1 0 1 34 86 35 14 0 12 chr11 109594584 109594634 -11016 Fam20a nonsense_mediated_decay 0.0853277076301528 3.29 1 0 0.2 43 62 39 17 5 15 chr1 74443664 74443714 2805 ENSMUST00000083534 miRNA NA NA 1 0 0.953 39 65 29 20 9 18 chr7 35954524 35954574 -16855 Slc7a10 protein_coding 0.322234574465938 3.89 1 0 0.027 46 57 31 15 6 25 chr7 77504873 77504923 581 Nr2f2 protein_coding 0.0297935811275799 9.94 1 0 1 59 56 30 15 0 20 chr9 58429865 58429915 -307 Nptn protein_coding 0.506063032358930 11.77 1 0 0.997 27 79 37 19 8 10 chr10 77927858 77927908 -163 Pdxk protein_coding 0.00768814949125 13.96 1 0 0.102 46 57 36 24 3 14 chr2 119302778 119302828 546 Ino80 protein_coding 0.0669852286993805 7.81 2 0 1 38 57 37 26 1 20 chr4 57307957 57308007 -4986 ENSMUST00000129102 processed_transcript NA NA 0 0 0.032 39 36 56 21 4 23 chr15 77066519 77066569 6437 ENSMUST00000158617 snRNA NA NA 2 0 0.137 60 57 21 16 7 18 chr15 85601806 85601856 -813 Ppara processed_transcript 0.054866411202044 9.94 2 0 0.027 47 41 30 27 6 28 chr1 74061137 74061187 -16120 Tns1 protein_coding NA NA 0 0 0.091 38 47 43 19 5 26 chr6 31166318 31166368 2090 AB041803 protein_coding 0.0359894366809084 5.19 1 1 1 43 67 34 12 9 13 chr7 133319147 133319197 24750 Xpo6 protein_coding 0.0139212200967043 5.59 0 1 0.047 41 48 38 11 13 27 chr1 74116279 74116329 -55811 Rufy4 protein_coding NA NA 0 0 0.862 50 41 38 25 3 20 chr3 25431731 25431781 -13186 ENSMUST00000157320 rRNA NA NA 0 0 0.155 24 40 37 30 22 24 chr6 42320153 42320203 3089 Epha1 protein_coding 0.00214574560673735 8.62 2 0 0.54 49 49 38 17 6 18 chr8 118507525 118507575 -275856 Maf protein_coding 0.221943787156832 11.02 1 0 1 39 64 31 21 3 19 chr10 61912932 61912982 -516 Supv3l1 protein_coding 0.381538378393977 10.83 2 0 0.281 48 49 36 15 7 22 chr10 79786211 79786261 -364 Pcsk4 retained_intron 0.00635251736555203 11.81 2 0 0.709 23 72 37 19 8 18 chr10 95086002 95086052 19601 ENSMUST00000158993 misc_RNA NA NA 1 0 0.288 46 54 35 22 6 14 chr11 101240492 101240542 11642 G6pc protein_coding 0.859260779441618 6.2 1 0 0.907 42 37 42 21 6 29 chr11 102269884 102269934 -649 Slc25a39 protein_coding 0.487014761710011 7.47 1 0 0.997 40 63 34 14 6 20 chr14 57726088 57726138 -2574 Gjb2 protein_coding 0.54504962529968 6.41 0 1 0.015 28 50 48 26 7 18 chr17 46141266 46141316 658 ENSMUST00000117042 miRNA NA NA 2 0 1 49 57 38 12 2 19 chr8 86238921 86238971 -130 Ddx39 protein_coding 0.454276164933578 1.71 0 0 0.646 50 45 39 16 5 21 chr11 60624655 60624705 -17 Shmt1 protein_coding 1.25075430425277e-05 20.69 1 0 0.076 37 73 35 13 2 16 chr3 28624182 28624232 20026 Slc2a2 protein_coding 0.00307421799245464 11 0 0 0.314 56 56 23 15 4 21 chr12 25917690 25917740 -136760 Id2 protein_coding 0.371636076234605 1.6 2 0 0.015 51 34 34 19 7 30 chr3 89092525 89092575 -7486 Efna1 protein_coding 0.0359232540729025 0.74 1 0 0.487 46 51 42 16 5 14 chr8 122570376 122570426 15709 Crispld2 retained_intron 0.599303243810644 4.22 1 0 0.195 36 49 46 26 5 12 chr11 69495540 69495590 21 Senp3 protein_coding 0.048341898054171 9.68 0 1 1 45 37 54 16 2 20 chr15 99670614 99670664 -20136 Lima1 protein_coding 0.0174508771542028 8.28 0 1 1 28 58 47 19 1 21 chr17 56255812 56255862 884 Plin5 protein_coding 0.128768551306098 15.61 1 0 1 47 44 42 17 4 20 chr2 38853449 38853499 304 ENSMUST00000141133 processed_transcript NA NA 2 0 0.159 67 43 17 18 5 23 chr2 152224672 152224722 -915 Sox12 protein_coding 0.198034891906173 23.55 0 1 1 32 65 37 21 4 14 chr4 146797892 146797942 -19663 ENSMUST00000120609 processed_pseudogene NA NA 0 0 0.157 32 33 30 30 18 30 chr19 3985302 3985352 -1246 Acy3 protein_coding 0.0567120204605189 7.54 0 1 0.043 39 41 43 20 5 25 chr1 123224602 123224652 -264 Insig2 protein_coding 0.00262305164436474 22.73 0 0 0.996 57 22 50 22 5 16 chr2 4917514 4917564 -599 Mcm10 retained_intron 6.7979751523312e-06 10.77 1 1 0 47 41 34 20 4 26 chr2 122507652 122507702 -20106 ENSMUST00000142323 processed_transcript 0.367906348741971 16.1 0 0 0.973 38 21 34 37 14 28 chr2 154906939 154906989 -6731 Ahcy protein_coding 0.000751360451054587 17.92 0 1 0.556 38 41 57 12 6 18 chr3 25430835 25430885 -14082 ENSMUST00000157320 rRNA NA NA 0 0 0.809 34 30 35 27 10 36 chr3 25445443 25445493 526 ENSMUST00000157320 rRNA NA NA 2 0 0.03 37 28 24 29 13 41 chr15 58831406 58831456 66066 Ndufb9 protein_coding 0.138715989842778 3.22 0 0 0.35 28 68 35 15 2 24 chrX 137054897 137054947 22285 Tsc22d3 processed_transcript 0.0169221028775023 16.84 1 0 1 41 41 40 27 1 22 chr2 126701995 126702045 -54 Trpm7 protein_coding 0.068358669289389 7.92 2 0 1 44 75 22 16 1 13 chr8 63379166 63379216 9905 2700029M09Rik retained_intron 0.277131921297025 5.38 0 0 0.011 21 67 46 21 3 13 chr9 107577046 107577096 4875 Gnat1 protein_coding 0.0923620651968695 8.87 2 0 1 40 47 32 23 4 25 chr10 81106520 81106570 -3 Ankrd24 protein_coding 0.117295803621893 23.56 1 0 0.86 40 59 27 17 7 21 chr11 40508425 40508475 39 Mat2b processed_transcript 0.222607118223789 8.12 2 0 1 49 52 26 14 3 27 chr12 25336007 25336057 -204 Klf11 protein_coding 0.533916042250481 5.67 2 0 1 39 58 35 18 5 16 chr12 71334889 71334939 6086 ENSMUST00000145871 lincRNA NA NA 1 0 0.054 42 67 27 16 7 12 chr12 73861772 73861822 -505 Ppm1a protein_coding 0.00612699293869513 9.04 0 0 0.901 47 54 41 11 6 12 chr1 193269901 193269951 -49006 Ppp2r5a protein_coding 0.432153774860358 7.19 2 0 0.354 39 66 31 18 2 14 chr2 163366499 163366549 904 ENSMUST00000125811 processed_transcript 0.945100298322114 21.54 2 0 1 49 51 33 15 7 15 chr4 146893190 146893240 1761 ENSMUST00000118377 processed_pseudogene NA NA 0 0 0 32 23 31 34 21 29 chr19 4510093 4510143 -404 Pcx protein_coding 0.264822766825718 18.31 1 0 1 48 55 43 13 3 8 chr4 115511710 115511760 -68 Mknk1 protein_coding 0.020183753787942 13.44 1 0 0.995 46 44 37 19 6 17 chr8 129114231 129114281 3080 Irf2bp2 protein_coding 0.0259458039671114 21.77 1 0 1 35 70 33 12 7 12 chr11 94006734 94006784 9785 ENSMUST00000125406 processed_transcript NA NA 0 1 0.211 35 50 37 21 6 20 chr12 113334527 113334577 -10342 Aspg protein_coding 0.102647029499469 5.88 1 0 0.073 41 56 33 25 6 8 chr19 26840216 26840266 17348 Smarca2 protein_coding 0.040125387533561 12.56 1 0 0.049 40 65 30 15 6 13 chr7 20427147 20427197 -10180 ENSMUST00000143167 lincRNA 0.330610510278535 0.81 1 0 0.26 44 49 42 17 3 13 chr12 29383328 29383378 20683 Adi1 processed_transcript 0.558927825431982 18.55 0 0 0.013 35 40 56 16 4 17 chr15 83197899 83197949 -217 1700001L05Rik protein_coding 0.131162888157031 23.89 1 0 0.072 45 73 23 18 1 8 chr16 4896825 4896875 10533 Mgrn1 protein_coding 0.000221788918752092 9.44 0 0 0.696 35 54 40 19 7 13 chr16 23294425 23294475 3907 St6gal1 protein_coding 3.25103490674872e-05 6.31 0 1 0.109 43 40 44 10 3 28 chr19 3389283 3389333 -71 Mtl5 protein_coding 0.106406089316599 6.77 1 0 0.988 29 57 48 15 3 16 chr19 44846117 44846167 14258 Pax2 protein_coding NA NA 0 0 0.029 27 58 40 24 5 14 chr1 26743025 26743075 1255 4931408C20Rik protein_coding NA NA 0 0 0.406 25 29 37 21 24 31 chr1 85258822 85258872 2442 protein_coding NA NA 0 0 0.498 28 32 31 30 8 38 chr2 6039583 6039633 11577 5430407P10Rik protein_coding 0.64491817968013 21.09 1 0 0.023 49 28 46 17 4 23 chr3 25444708 25444758 -209 ENSMUST00000157320 rRNA NA NA 1 0 0.182 25 25 25 33 22 37 chr3 65467253 65467303 -2872 Lekr1 protein_coding 0.333918793009275 20.86 0 0 0.978 53 43 35 10 4 22 chr6 49992201 49992251 1403 Gm10464 protein_coding NA NA 2 0 0.895 31 60 29 17 9 21 chr7 3656184 3656234 243 Rps9 nonsense_mediated_decay 0.21379393342694 10.85 2 0 1 41 51 28 10 6 31 chr7 71056470 71056520 -5248 ENSMUST00000126152 lincRNA NA NA 1 0 0.032 28 39 46 21 14 19 chr8 11008941 11008991 -536 Irs2 protein_coding 0.195788938783652 0.18 1 0 1 51 49 38 11 3 15 chr8 37612411 37612461 27887 Dlc1 retained_intron 0.0148606047752350 4.55 1 1 0.015 24 73 33 18 4 15 chr14 31832180 31832230 -5 Gnl3 protein_coding 0.0269041022545321 10.86 1 0 0.979 41 63 22 21 2 17 chr15 79158719 79158769 -161 Pla2g6 protein_coding 0.162842275874091 12.37 1 0 0.982 30 63 34 20 3 16 chr16 87610539 87610589 10801 ENSMUST00000082736 snRNA NA NA 0 1 0.237 36 45 42 21 5 17 chr19 37152707 37152757 70920 ENSMUST00000116894 misc_RNA NA NA 2 0 0.961 26 43 64 21 5 7 chr1 74443463 74443513 2604 ENSMUST00000083534 miRNA NA NA 0 0 1 34 46 28 25 15 17 chr14 70027122 70027172 12936 ENSMUST00000137838 lincRNA NA NA 2 0 0.326 54 44 21 19 6 21 chr5 46248756 46248806 -41 Lcorl protein_coding 0.105147728906948 11.85 0 1 1 39 46 45 17 5 12 chr6 86422187 86422237 8178 C87436 processed_transcript 0.193647787118945 14.16 0 1 0.052 43 47 38 18 4 14 chr7 145729808 145729858 -140420 Tcerg1l protein_coding 0.810660686024257 11.01 2 0 0.085 47 48 24 16 10 19 chr8 72963653 72963703 -200 Crtc1 protein_coding 0.816197142626118 20.97 1 0 0.996 27 57 39 15 5 21 chr11 115991895 115991945 518 Trim65 protein_coding 0.250010185023410 12.81 0 0 0.999 40 43 39 22 3 17 chr19 23215365 23215415 -326 Klf9 protein_coding 0.0184881064175068 8.48 1 0 0.12 30 64 39 11 6 14 chr19 42119863 42119913 -453 Dhdpsl protein_coding 0.0280629710072563 10.3 1 0 0.388 36 50 30 20 5 23 chr7 107731267 107731317 297 Mrpl48 protein_coding 0.120091243805932 6.15 1 1 0.893 34 48 43 14 10 14 chr19 3833231 3833281 -18517 Chka nonsense_mediated_decay 0.000112670033263394 22.25 1 0 0.997 27 51 52 17 7 9 chr19 44060627 44060677 394 Cpn1 protein_coding 0.202380596983710 20.39 1 0 1 43 42 44 12 3 19 chr3 108204848 108204898 634 Celsr2 protein_coding 0.428169614127072 1.54 2 1 1 32 41 48 16 3 22 chr4 150418747 150418797 2 Per3 protein_coding 0.0319430223617618 9.92 0 1 0.954 38 47 35 23 5 14 chr17 87176039 87176089 -18951 Epas1 protein_coding 0.207307922985932 14.07 2 0 1 27 46 37 22 13 17 chr6 72181021 72181071 4525 Atoh8 protein_coding 0.55773468215857 7.36 1 0 1 39 53 38 14 7 10 chr11 120122960 120123010 24972 Bahcc1 protein_coding 0.325165380776291 6.32 3 0 1 33 42 50 15 7 14 chr4 146798171 146798221 -19384 ENSMUST00000120609 processed_pseudogene NA NA 0 0 0.158 25 35 31 31 13 25 chr7 16683692 16683742 -90 Napa protein_coding 0.638547663782387 13.01 1 0 0.971 32 65 32 16 1 14 chr1 122017765 122017815 13 3110009E18Rik protein_coding 0.0395610631078558 20.86 0 0 1 40 50 31 16 7 15 chr1 133724584 133724634 55 Slc41a1 protein_coding 0.109700424965499 6.7 1 0 1 37 45 43 16 4 14 chr3 67386637 67386687 -7 Mfsd1 protein_coding 0.76336793687952 9.9 3 0 0.977 55 39 27 12 9 17 chr4 141511183 141511233 -1099 Fhad1 processed_transcript 0.427369840422395 16.32 1 0 0.994 35 52 32 19 7 14 chr8 129469920 129469970 -217 Tomm20 protein_coding 0.00793411479373475 12.29 1 0 0.005 47 55 23 10 2 22 chr12 70755158 70755208 27405 Sos2 protein_coding 0.156666786843777 6.69 0 0 0.006 29 21 35 28 10 36 chr15 25622048 25622098 17808 Myo10 processed_transcript 0.0845962743836751 22.67 1 0 0.079 40 38 44 21 3 13 chr3 138117921 138117971 11818 Adh5 protein_coding 0.561818476294694 11.81 0 0 0.512 42 39 30 21 6 20 chr8 87514839 87514889 348 Hook2 protein_coding 6.34570273687827e-05 9.05 3 0 1 34 58 30 17 3 16 chr1 26743821 26743871 459 4931408C20Rik protein_coding NA NA 0 0 0.189 27 26 27 34 18 25 chr1 135272597 135272647 8758 Etnk2 processed_transcript 0.395407031825076 12.2 1 0 0.716 37 52 33 15 2 18 chr5 139856583 139856633 73 Gpr146 protein_coding 0.000984275200353261 8.41 1 0 1 22 65 29 20 7 14 chr12 75008694 75008744 -172 Hif1a protein_coding 0.0686717848964176 8.89 0 0 1 38 49 50 14 2 4 chr14 58416909 58416959 -83 Sap18 protein_coding 0.00818965720819545 11.18 1 0 0.99 38 36 42 15 6 20 chr16 3247528 3247578 -2031 ENSMUST00000116737 miRNA NA NA 0 0 0.052 35 27 25 30 13 27 chr16 30988521 30988571 -14942 ENSMUST00000123905 processed_transcript NA NA 1 0 0.424 40 49 29 17 5 17 chr3 87981640 87981690 42 ENSMUST00000125478 lincRNA NA NA 2 0 1 44 53 23 22 6 8 chr6 117857735 117857785 18 4933440N22Rik protein_coding 0.201231558834947 8.84 1 0 0.836 39 66 23 15 1 12 chr7 142245159 142245209 -40590 ENSMUST00000052520 pseudogene 0.265597386112268 14.58 3 0 0.012 11 74 38 17 0 16 chr9 107577445 107577495 4476 Gnat1 protein_coding 0.0923620651968695 8.87 1 0 0.999 46 31 29 14 1 35 chr10 121063566 121063616 -219 Xpot protein_coding 0.0134329819405976 10.07 1 0 1 35 52 34 15 7 13 chr11 77992428 77992478 -85 Tlcd1 protein_coding 0.124128730542669 8.31 1 1 1 32 53 40 11 6 14 chr15 77787202 77787252 -75 Foxred2 protein_coding 0.697357729146996 2.27 1 0 1 32 60 31 16 4 13 chr15 81633019 81633069 193 Tef protein_coding 0.000118217645722963 11.4 0 1 1 20 50 54 22 3 7 chr17 26708474 26708524 10028 Ergic1 protein_coding 0.64339108013582 15.42 1 0 0.074 50 44 25 12 7 18 chr3 37319188 37319238 -7 Spata5 protein_coding 0.0888423722401129 21.01 0 1 0.994 43 37 31 24 4 16 chr4 106136085 106136135 824 Pcsk9 protein_coding 0.535648283223066 8.86 1 0 0.037 49 45 25 9 12 15 chr5 140865174 140865224 17 Snx8 protein_coding 0.858931919868392 11.78 1 1 1 40 45 40 13 2 15 chr7 52379875 52379925 -140 Rps11 protein_coding 0.331264154579344 4.02 1 0 0.993 42 34 35 19 4 21 chr8 124854500 124854550 30121 Trhr2 protein_coding 0.579254293359351 19.34 1 0 0.114 42 34 32 25 8 14 chr8 128096371 128096421 -2793 protein_coding NA NA 1 0 0.052 15 44 54 27 4 11 chr9 107457020 107457070 58 Rassf1 protein_coding 0.388269817850374 18.99 0 0 0.615 32 53 38 17 4 11 chr10 17442862 17442912 -145 Cited2 protein_coding 0.4921575047407 2.82 1 0 1 43 42 31 22 4 13 chr10 79727491 79727541 -213 Dazap1 protein_coding 0.0147698114856608 9.06 2 0 0.147 34 48 43 13 7 10 chr12 3860120 3860170 2099 ENSMUST00000101635 protein_coding NA NA 1 0 0.65 31 51 38 16 4 15 chr17 31649192 31649242 -15 Wdr4 protein_coding 0.422895595790294 8.17 1 0 0.875 32 61 33 15 7 7 chr2 103601325 103601375 4 Nat10 retained_intron 0.125183730300496 23.8 2 0 0.569 46 49 22 15 4 18 chr3 25427602 25427652 -17315 ENSMUST00000157320 rRNA NA NA 0 0 0.018 24 33 27 28 12 30 chr6 120615570 120615620 -792 Cecr2 retained_intron 0.424764013929538 3.02 1 0 1 22 75 25 14 4 14 chr7 108160477 108160527 3 P2ry2 protein_coding 0.579595854975484 9.57 1 0 0.795 24 69 27 12 8 14 chr7 142246519 142246569 -39230 ENSMUST00000052520 pseudogene 0.265597386112268 14.58 0 1 1 28 46 45 19 1 15 chr8 73655829 73655879 -4374 protein_coding NA NA 0 0 0 31 23 33 26 16 25 chr13 68721031 68721081 -58 Mtrr protein_coding 0.169513906334019 9.08 0 0 0.158 27 64 24 22 6 11 chr16 35770348 35770398 -99 Hspbap1 protein_coding 0.713271000603203 21.86 0 0 0.973 40 52 30 19 5 8 chr17 13406717 13406767 -7312 Smok2a protein_coding NA NA 0 0 0.215 29 27 37 31 10 20 chr17 73185618 73185668 -399 Ypel5 protein_coding 0.00065897269804258 10.6 1 0 1 39 29 57 17 2 10 chr19 10178968 10179018 -2983 Fads2 protein_coding 0.0793500665669322 10.52 1 0 0.557 42 35 31 20 10 16 chr19 26840002 26840052 17134 Smarca2 protein_coding 0.040125387533561 12.56 0 1 0.197 38 66 26 9 3 12 chr3 3000334 3000384 -507671 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 30 25 24 27 19 28 chr3 25417007 25417057 -27910 ENSMUST00000157320 rRNA NA NA 0 0 0.045 22 21 29 28 18 35 chr5 116895883 116895933 945 Srrm4 retained_intron 0.0648489256864973 5.21 1 0 0.048 40 35 35 21 3 19 chr6 71186638 71186688 25561 Smyd1 processed_transcript 0.00144779576889649 8.62 1 1 0.087 40 59 25 13 4 12 chr10 92664956 92665006 39451 ENSMUST00000158589 miRNA 0.583252991198612 2.77 1 0 0.076 44 42 28 12 3 24 chr15 81666994 81667044 21737 Tob2 protein_coding 0.0705288360745018 11.1 0 0 0.173 20 26 62 26 7 12 chr17 36106474 36106524 196 Abcf1 protein_coding 0.0924800366945344 12.6 2 0 0.04 44 41 29 21 4 14 chr17 56345956 56346006 12278 Dpp9 protein_coding 0.117051971893277 0.76 1 0 0.782 31 24 37 26 8 27 chr19 4756471 4756521 -29 Rbm4b protein_coding 0.108526506819971 17.26 0 0 1 34 47 32 26 3 11 chr19 42734278 42734328 40089 ENSMUST00000104580 snoRNA NA NA 1 0 0.893 39 48 35 15 5 11 chr1 155179438 155179488 453 Lamc1 protein_coding 0.219359408856348 9.14 1 0 1 33 51 32 12 8 16 chr2 122507439 122507489 -20319 ENSMUST00000142323 processed_transcript 0.367906348741971 16.1 0 0 0.77 36 25 28 23 15 25 chr2 129024388 129024438 -87 Slc20a1 protein_coding 0.00778455294449942 12.11 0 0 0.725 40 35 43 20 3 11 chr3 3003873 3003923 -504132 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 23 22 34 23 18 32 chr3 25430096 25430146 -14821 ENSMUST00000157320 rRNA NA NA 0 0 0.998 33 25 26 25 19 24 chr4 139519224 139519274 4119 Klhdc7a pseudogene 0.586049656826228 9.09 0 0 0.011 55 42 29 12 5 9 chr4 146893727 146893777 1224 ENSMUST00000118377 processed_pseudogene NA NA 0 0 0 33 27 20 33 7 32 chr4 150059172 150059222 -6296 ENSMUST00000149065 processed_transcript NA NA 0 0 0.408 27 51 35 19 4 16 chr7 52722206 52722256 -46 Bax protein_coding 0.288501260673301 6.34 3 0 1 35 43 42 19 5 8 chr8 10185444 10185494 31546 Myo16 protein_coding NA NA 0 0 0 24 13 36 26 10 43 chr15 101021050 101021100 16540 Acvr1b protein_coding 0.569873128888416 6.84 1 0 0.997 33 54 34 13 0 18 chr15 101814868 101814918 19849 Krt8 protein_coding 0.0793527563074882 4.87 1 0 1 33 34 37 26 5 17 chr3 25443720 25443770 -1197 ENSMUST00000157320 rRNA NA NA 1 0 0.151 26 31 26 22 20 26 chr3 121559351 121559401 -41262 Abcd3 protein_coding 0.146669103309415 8.93 0 0 0.096 37 43 32 19 2 18 chr5 145009223 145009273 -1873 ENSMUST00000124015 processed_transcript NA NA 1 1 0.948 30 54 39 14 2 12 chr8 129138129 129138179 -20818 Irf2bp2 protein_coding 0.0259458039671114 21.77 1 0 0.141 44 41 25 21 4 16 chr11 120094156 120094206 -80 Bahcc1 protein_coding 0.325165380776291 6.32 0 0 1 24 72 31 15 1 8 chr11 120201394 120201444 7986 Actg1 protein_coding 0.115837091454913 22.12 0 0 0.207 31 43 38 14 3 22 chr15 102456009 102456059 -182 Atf7 protein_coding 0.678567486692208 14.3 1 0 0.979 37 52 35 17 0 10 chr18 5819050 5819100 204604 ENSMUST00000116893 miRNA NA NA 1 0 0.993 36 40 39 13 4 19 chr19 5912858 5912908 -12 Dpf2 protein_coding 0.444893777602831 16.13 0 0 1 32 33 35 19 7 25 chr1 157887957 157888007 -38 Tor1aip2 protein_coding 0.0137718175315139 7.03 0 1 0.375 29 48 39 21 4 9 chr1 172386530 172386580 100686 Nos1ap protein_coding 0.718231285939189 1.72 2 0 0.102 37 33 37 18 1 24 chr3 96361789 96361839 -66 Txnip protein_coding 0.224912165853082 5.09 0 0 1 36 73 16 9 3 13 chr3 122016067 122016117 -19471 ENSMUST00000103257 miRNA NA NA 1 0 0.057 41 34 29 16 4 26 chr5 111935495 111935545 -75061 C130026L21Rik protein_coding NA NA 0 0 1 40 49 30 16 8 7 chr5 136164517 136164567 -364 Por protein_coding 0.00539808694215799 13.63 0 0 0.068 37 45 34 17 2 15 chr6 81989332 81989382 -1680 Fam176a protein_coding 0.38191885019809 7.23 0 0 0.651 30 50 43 14 5 8 chr6 108610363 108610413 -235 Bhlhe40 protein_coding 0.00980338467028005 12.81 0 0 1 44 60 24 13 3 6 chr6 121072853 121072903 -41251 protein_coding NA NA 2 0 0.091 42 24 47 13 6 18 chr8 127175704 127175754 11540 2310022B05Rik protein_coding 0.00887422336257628 2.69 1 0 0.106 16 71 28 18 5 12 chr11 84693686 84693736 -11 Myo19 processed_transcript 0.0372939302859300 14.27 0 0 0.016 40 43 35 20 2 10 chr12 45311169 45311219 -139 Dnajb9 protein_coding 0.00778331599822057 14.23 1 0 1 34 64 23 15 2 12 chr13 54526810 54526860 4226 ENSMUST00000158716 misc_RNA NA NA 0 0 1 35 37 35 14 10 19 chr14 59819812 59819862 -228 Rcbtb1 protein_coding 0.206653502294503 17.52 0 0 0.226 31 53 32 13 7 14 chr2 180460008 180460058 -11 Slc17a9 protein_coding 0.0617173936106499 17.39 1 0 1 33 50 28 12 8 18 chr3 28679978 28680028 -230 Eif5a2 protein_coding 0.168252586299891 9.73 0 0 1 37 57 29 12 3 11 chr3 98945333 98945383 270 Wars2 processed_transcript 0.685939845378674 8.96 0 0 0.991 43 29 35 24 7 11 chr4 147829903 147829953 7194 Mtor protein_coding 0.0295652402536746 8.13 1 0 0.004 44 18 42 22 6 17 chr6 54152834 54152884 -25182 ENSMUST00000112504 processed_pseudogene 0.0199763662010391 6.52 1 0 0.013 20 29 57 18 8 17 chr7 146099709 146099759 1428 Bnip3 processed_transcript 0.00595965705783453 12.74 1 0 0.987 43 44 24 12 8 18 chr10 126500348 126500398 -217 Cdk4 protein_coding 0.107358141677709 3.02 0 0 1 31 57 31 17 7 6 chr12 106097518 106097568 5743 Clmn protein_coding 0.000970385814776883 9.44 2 0 0.018 32 55 24 17 11 10 chr15 85605777 85605827 3158 Ppara processed_transcript 0.054866411202044 9.94 1 1 0.257 28 38 35 22 5 21 chr17 56920173 56920223 15997 Dus3l protein_coding 0.290215308207747 23.77 1 0 1 41 36 31 14 5 22 chr19 10680054 10680104 21 Ddb1 protein_coding 0.0515901791012467 10.21 1 0 1 26 42 33 19 7 22 chr19 55267264 55267314 766 Tectb processed_transcript 0.774318709179539 1.71 1 0 0.349 33 51 31 15 4 15 chr1 155526499 155526549 11905 Rgs8 processed_transcript 0.459890940923889 10.72 0 0 1 25 44 49 17 6 7 chr4 147966112 147966162 110 Srm retained_intron 0.00158232469589402 14.22 1 0 1 39 53 21 10 4 21 chr6 128387933 128387983 200 Fkbp4 protein_coding 0.000760720954916111 19.27 0 0 0.198 34 31 46 15 9 13 chr7 29168264 29168314 -4015 Zfp36 protein_coding 0.374784023231503 9.08 2 0 1 34 55 25 14 5 15 chr7 90786452 90786502 5414 Stard5 processed_transcript 0.000715796786579195 12.77 0 1 0.166 26 38 42 20 7 15 chr10 24668384 24668434 -21163 Arg1 protein_coding 0.0845142076756829 19.52 1 0 0.018 39 46 33 12 6 12 chr10 74594585 74594635 70969 Bcr protein_coding 0.00953414028791316 4.44 0 1 0.194 36 42 32 16 7 15 chr11 87515873 87515923 273 ENSMUST00000142895 processed_transcript NA NA 1 0 0.322 19 46 44 22 4 13 chr13 55291779 55291829 -19339 Nsd1 protein_coding 0.569706465125462 21.05 1 0 0.112 32 39 34 30 5 8 chr16 87710371 87710421 11147 Bach1 retained_intron 0.2341898252113 9.97 1 0 0.311 24 46 42 13 9 14 chr17 3037503 3037553 7205 ENSMUST00000089221 retrotransposed 0.135196639277901 21.92 0 0 0 27 19 31 22 17 32 chr18 12017060 12017110 -18138 ENSMUST00000122616 miRNA NA NA 0 1 0.06 51 43 23 17 6 8 chr1 167933475 167933525 -735 Pou2f1 protein_coding 0.0512959425305902 4.48 0 1 1 34 62 27 7 3 14 chr2 152632006 152632056 24015 Bcl2l1 processed_transcript 0.64587329359201 21.25 1 0 0.99 19 45 41 17 7 18 chr4 126754577 126754627 -25 Zmym6 protein_coding 0.0168970228076609 19.17 1 0 0.804 33 55 28 10 4 17 chr4 141346684 141346734 97 Dnajc16 protein_coding 0.173248844552324 6.36 1 0 1 26 43 30 23 4 21 chr4 146797453 146797503 -20102 ENSMUST00000120609 processed_pseudogene NA NA 0 0 0.237 27 25 31 26 19 19 chr11 90252250 90252300 -44 Hlf protein_coding 0.00347982362518568 12.57 0 0 1 25 55 13 21 9 24 chr11 101845611 101845661 456 Dusp3 processed_transcript 0.0728915669082404 9.93 1 1 1 21 46 39 14 4 23 chr18 15121031 15121081 45625 Kctd1 protein_coding 0.0957636520054865 18.8 0 0 0.646 29 46 43 9 4 16 chr1 135134354 135134404 -8304 Plekha6 protein_coding 0.80602603597601 8.94 2 0 0.023 28 55 28 20 3 12 chr3 69526390 69526440 238 Nmd3 protein_coding 0.131468792495837 12.44 1 0 1 33 54 27 11 3 18 chr6 59364979 59365029 11284 Gprin3 protein_coding 0.390865367776004 10.4 0 0 1 29 66 25 9 2 15 chr7 16683897 16683947 -35 Napa processed_transcript 0.638547663782387 13.01 1 0 1 24 60 30 15 3 14 chr7 134505104 134505154 -1813 ENSMUST00000098027 pseudogene NA NA 0 0 0 43 46 22 13 10 12 chr11 74463398 74463448 91 1300001I01Rik processed_transcript 0.00132738262094582 2.68 0 0 1 35 57 31 11 1 11 chr12 53547768 53547818 -57166 Arhgap5 protein_coding 0.835911674811072 11.96 2 0 1 40 38 30 19 3 16 chr18 39523658 39523708 1444 Arhgap26 protein_coding 0.266673349594737 23.12 1 0 0.024 36 28 42 15 6 19 chr2 27454763 27454813 58839 ENSMUST00000132898 processed_transcript NA NA 0 1 0.652 38 34 29 17 6 21 chr5 147760272 147760322 16 Gtf3a protein_coding 0.0966746649117546 12.75 1 0 0.987 22 60 30 13 10 10 chr7 28146590 28146640 -1718 ENSMUST00000116912 miRNA NA NA 0 0 1 26 62 31 16 3 7 chr7 71219990 71220040 -78716 Trpm1 protein_coding 0.160702632394354 18.35 0 0 0 24 19 36 17 15 34 chr7 117265140 117265190 -405 Wee1 protein_coding 0.00320795798089123 11.47 1 0 0.983 29 60 23 15 3 15 chr10 75298282 75298332 -1152 Gstt2 protein_coding 0.00731340625920443 9.35 1 1 0.413 22 59 30 17 5 12 chr11 72422026 72422076 1230 Ube2g1 retained_intron 0.0670815921385812 10.72 0 1 1 27 39 44 15 3 17 chr11 98967537 98967587 -16942 Tns4 protein_coding 0.33400416696072 21.09 0 1 0.039 35 53 28 15 4 10 chr12 53497560 53497610 -107374 Arhgap5 protein_coding 0.835911674811072 11.96 0 0 0.699 24 40 33 21 11 16 chr13 102523797 102523847 14350 Pik3r1 protein_coding 0.0148001546822855 15.05 1 1 0.039 38 44 29 13 6 15 chr14 26286041 26286091 -5452 ENSMUST00000156682 processed_transcript NA NA 1 0 0.984 25 58 31 11 7 13 chr16 20716453 20716503 -241 Clcn2 retained_intron 0.925410411499217 16 1 0 0.446 29 55 35 18 2 6 chr17 64993062 64993112 42098 Man2a1 protein_coding 0.134107760488904 15.58 0 0 0.996 27 65 27 10 5 11 chr3 129590960 129591010 6870 Pla2g12a protein_coding 0.0934992174809134 11.4 0 1 0.092 45 17 42 15 9 16 chr4 3866006 3866056 -4 Chchd7 protein_coding 0.274029038965903 10.87 0 0 1 18 62 37 12 3 12 chr4 151586286 151586336 8276 ENSMUST00000127752 processed_transcript NA NA 0 0 0.112 22 55 32 17 4 14 chr8 10892111 10892161 36321 3930402G23Rik protein_coding 0.397665537485372 2.33 2 0 0.027 33 37 34 13 6 21 chr9 42272469 42272519 -2950 Tbcel protein_coding 0.0146484092272636 4.46 3 0 0.034 18 68 30 13 2 13 chr9 66683142 66683192 -689 Aph1c protein_coding 0.263871915812964 18.3 0 0 0.133 35 49 25 12 8 15 chr10 19886749 19886799 17955 Mtap7 protein_coding 0.120338044425979 14.69 2 0 0.411 32 49 37 11 4 11 chr12 72531025 72531075 -108403 ENSMUST00000132822 processed_transcript 0.887374803643236 7.65 1 1 0.664 61 50 10 10 0 13 chr14 48153371 48153421 34693 D14Ertd436e protein_coding 0.0246744930881982 8.8 0 0 0.325 30 32 35 15 15 17 chr15 25571299 25571349 19020 Myo10 retained_intron 0.0845962743836751 22.67 3 0 0.028 42 33 32 11 6 20 chr16 20717842 20717892 -8 Polr2h protein_coding 0.0430117269435257 13.42 1 0 0.999 44 31 38 18 6 7 chr17 74605965 74606015 88166 Memo1 protein_coding 0.54655519381233 19.73 2 0 0.112 36 48 25 16 2 17 chr1 26743308 26743358 972 4931408C20Rik protein_coding NA NA 1 0 0.055 22 27 27 27 14 26 chr2 179853893 179853943 -93 Osbpl2 protein_coding 0.0368737698213803 10.62 0 1 0.697 31 57 35 8 4 8 chr3 25416790 25416840 -28127 ENSMUST00000157320 rRNA NA NA 1 0 0.106 27 21 26 31 12 26 chr5 118436533 118436583 9757 Fbxo21 protein_coding 0.000695207032239888 6.78 1 0 0.14 33 33 34 16 5 22 chr5 149790170 149790220 2474 Katnal1 processed_transcript 0.0261411873465676 6.82 0 0 0.177 47 43 26 10 3 14 chr6 32345463 32345513 -55682 ENSMUST00000152538 ambiguous_orf NA NA 1 0 0.012 28 39 31 19 9 17 chr8 41977542 41977592 -6225 Slc7a2 protein_coding 0.0269972807238559 9.53 0 0 0.027 39 32 32 16 5 19 chr8 73108183 73108233 -10181 Isyna1 protein_coding 0.625786052424853 3.01 2 0 0.179 35 36 40 12 10 10 chr10 39745069 39745119 -20 AI317395 protein_coding 0.0761913196062175 11.02 0 0 0.798 26 47 41 14 3 12 chr11 117739695 117739745 -4925 Tha1 processed_transcript 0.702175034291913 12.84 2 0 0.885 28 59 26 14 3 13 chr14 63503152 63503202 14626 ENSMUST00000122516 rRNA NA NA 2 0 0.036 31 40 33 20 6 13 chr15 89311102 89311152 4460 ENSMUST00000136218 lincRNA 0.556432188329346 11.38 1 0 0.039 39 40 26 13 5 20 chr16 5134944 5134994 -2395 Ppl protein_coding 0.0804897523910051 13.67 0 0 0.968 35 27 47 20 3 11 chr19 57451622 57451672 16113 Fam160b1 protein_coding 0.00186857815528548 10.62 2 0 0.021 30 45 30 15 2 21 chr1 180531367 180531417 -35644 ENSMUST00000083033 snRNA NA NA 1 0 0.058 15 39 55 16 3 14 chr2 129058341 129058391 -2051 ENSMUST00000126080 processed_transcript NA NA 0 0 0.891 39 30 43 17 1 12 chr3 25443131 25443181 -1786 ENSMUST00000157320 rRNA NA NA 0 0 0.926 32 28 24 20 12 26 chr7 148487445 148487495 9541 Drd4 protein_coding 0.377560679322125 21.12 1 0 1 36 35 27 12 7 25 chr11 86940670 86940720 -112 Trim37 protein_coding 0.193871463548557 21.62 1 0 1 28 62 26 11 3 12 chr1 188182301 188182351 235246 ENSMUST00000158738 rRNA NA NA 0 1 1 29 44 35 19 6 8 chr6 108380095 108380145 41145 Gm10429 protein_coding NA NA 0 0 0.976 24 40 40 10 6 21 chr6 108469547 108469597 46010 ENSMUST00000062429 pseudogene 0.122421523728523 16.13 1 0 0.037 26 40 41 16 5 13 chr11 31647218 31647268 -75344 Bod1 protein_coding 0.249231773950002 4.92 1 0 0.149 26 52 26 18 5 14 chr14 61744247 61744297 -13022 Sacs protein_coding 0.144591164188576 12.02 0 0 0.03 46 42 28 11 4 10 chr15 76406720 76406770 -97 Adck5 protein_coding 0.233152392269285 4.06 1 0 0.271 51 41 18 15 6 10 chr16 20717543 20717593 251 Clcn2 nonsense_mediated_decay 0.925410411499217 16 1 0 1 35 52 28 16 3 7 chr7 149719345 149719395 453 Mrpl23 protein_coding 0.496996445814979 23.08 2 0 0.465 48 38 24 12 5 13 chr9 95412384 95412434 -96 2610101N10Rik protein_coding 0.73641009718658 23.37 1 0 1 34 37 32 19 2 16 chr9 123382496 123382546 -5303 Limd1 protein_coding 0.0946989450364576 7.2 1 0 0.849 35 33 28 20 8 16 chr11 68666687 68666737 -75 Ndel1 protein_coding 0.00028734180701784 10.59 1 0 0.998 26 39 37 20 2 16 chr12 34065193 34065243 13029 Atxn7l1 protein_coding 0.307934773785410 21.92 1 0 0.545 27 41 31 16 3 22 chr2 24790919 24790969 -172 Arrdc1 protein_coding 0.165888162565464 21.52 0 1 0.28 44 36 28 13 4 14 chr4 145740204 145740254 8780 1700029I01Rik protein_coding 0.96525694818934 10.85 1 0 0 27 23 31 26 15 17 chr7 26005665 26005715 -780 Zfp526 protein_coding 0.271699876773492 17.52 0 1 0.98 22 46 37 19 2 13 chr7 30386595 30386645 22726 6330444E15Rik protein_coding NA NA 3 0 0 32 43 22 11 6 25 chr7 54100771 54100821 -413 Ldha protein_coding 0.362325393200288 7.23 1 0 0.027 43 35 27 11 4 19 chr9 103268374 103268424 -396 Cdv3 protein_coding 0.0980305098958572 10.71 0 1 0.881 25 47 40 10 9 8 chr11 74652141 74652191 1196 Mnt protein_coding 0.231546067721028 22.37 0 0 1 37 51 21 11 3 16 chr11 112799563 112799613 113095 ENSMUST00000020950 protein_coding 0.776870634513409 20.27 0 1 1 30 46 32 12 7 12 chr12 81319238 81319288 27405 Strm protein_coding NA NA 1 0 0.027 34 40 27 19 7 12 chr15 77213095 77213145 13816 Apol7a protein_coding 0.0602011187803944 0.45 0 0 0 26 35 32 13 7 26 chr6 90417027 90417077 1754 Klf15 protein_coding 0.0493188930731104 11.24 1 0 1 45 35 27 17 4 10 chr8 10854665 10854715 -45562 ENSMUST00000071573 retrotransposed NA NA 0 0 0.06 38 30 28 14 9 19 chr8 13159156 13159206 -91 Lamp1 protein_coding 0.738454068942971 8.6 2 0 0.991 31 53 31 15 0 8 chr8 48735007 48735057 -16914 ENSMUST00000072322 pseudogene 0.188475012110812 8.04 0 0 0.112 30 53 22 11 4 18 chr9 95412641 95412691 -353 2610101N10Rik protein_coding 0.73641009718658 23.37 0 0 0.013 37 39 27 16 5 14 chr9 102626598 102626648 1759 Amotl2 retained_intron 0.989072061155151 18.4 2 0 1 46 29 25 14 6 18 chr12 82287817 82287867 146096 protein_coding 0.135356381560204 23.62 1 0 0.013 34 41 27 9 9 18 chr13 56793558 56793608 -10788 Smad5 protein_coding 0.0955083218570313 9.77 1 0 1 42 49 16 14 1 16 chr13 105077050 105077100 -840 Adamts6 protein_coding 0.108546097468158 5.58 1 1 1 33 49 24 6 3 23 chr14 28110463 28110513 -38875 Arhgef3 protein_coding 0.660847527558044 7.59 0 0 0.309 26 37 32 19 7 17 chr14 123312322 123312372 -4 A2ld1 protein_coding 0.120250290974689 20.96 2 0 0.168 24 51 29 18 4 12 chr15 77066814 77066864 6142 ENSMUST00000158617 snRNA NA NA 1 0 0.159 55 39 21 12 3 8 chr15 103135609 103135659 5244 Gpr84 protein_coding 0.0423939500564864 17.22 0 0 0.107 39 31 32 15 7 14 chr16 93603869 93603919 142 Setd4 retained_intron 0.0570743042940783 7.3 1 0 0.147 24 33 46 13 5 17 chr18 61371269 61371319 -28 Slc26a2 protein_coding 0.667154956730579 8.44 1 0 0.168 25 45 35 21 3 9 chr19 23209141 23209191 -224 ENSMUST00000058189 protein_coding NA NA 2 0 0.991 26 67 22 8 2 13 chr3 25445822 25445872 905 ENSMUST00000157320 rRNA NA NA 0 0 0.015 28 15 16 33 12 33 chr4 141625132 141625182 -14730 ENSMUST00000153023 processed_transcript NA NA 2 0 0.022 40 50 18 6 9 14 chr5 65741878 65741928 2278 Klb protein_coding 0.051249665073768 7.06 1 0 0.85 48 39 27 4 0 19 chr8 96910367 96910417 -8 Herpud1 protein_coding 1.33390191519315e-05 12.5 2 0 0.864 28 55 26 13 4 11 chr11 70469417 70469467 553 ENSMUST00000131642 processed_transcript NA NA 1 0 1 20 60 27 19 5 6 chr11 120434773 120434823 -231 P4hb protein_coding 0.902884824403151 21.12 0 0 1 26 43 26 14 8 20 chr12 17552017 17552067 264 Odc1 protein_coding 0.0989846915680073 16.68 2 0 0.6 34 37 32 12 7 15 chr3 3002445 3002495 -505560 Hnf4g protein_coding 0.212121479425123 5.57 1 0 0 36 21 19 22 13 25 chr4 150081233 150081283 -28357 ENSMUST00000149065 processed_transcript NA NA 1 0 0.045 32 52 20 15 7 10 chr6 6167262 6167312 -169 Slc25a13 protein_coding 0.186244683676537 14.34 1 0 1 39 32 26 18 6 15 chr7 27914059 27914109 1609 ENSMUST00000153562 processed_transcript NA NA 0 1 0.054 39 23 33 19 1 21 chr11 96805178 96805228 69 Pnpo protein_coding 0.255146991321567 17.44 1 0 1 38 23 31 23 4 17 chr15 58875516 58875566 38003 Mtss1 protein_coding 0.00113162867473647 14.08 2 0 0.246 40 37 28 16 3 12 chr19 6996366 6996416 -83 Esrra protein_coding 0.132907861767947 14.84 1 0 0.996 29 36 39 15 8 9 chr19 46742756 46742806 1222 Cyp17a1 retained_intron 0.439906664187570 2.54 1 0 0.113 41 40 24 17 3 11 chr3 25431508 25431558 -13409 ENSMUST00000157320 rRNA NA NA 0 0 0.116 24 29 28 24 11 19 chr4 82970234 82970284 -100 Ttc39b protein_coding 0.0598401812891733 0.62 1 0 0.108 23 51 28 17 6 10 chr4 97424166 97424216 -111 ENSMUST00000149078 processed_transcript NA NA 0 0 0.994 29 35 34 15 3 19 chr4 146799955 146800005 -17600 ENSMUST00000120609 processed_pseudogene NA NA 0 0 0.122 22 22 21 21 24 25 chr5 53587913 53587963 16620 Sel1l3 protein_coding 0.432753645081683 10.44 0 0 0.017 30 32 29 18 8 18 chr7 77491204 77491254 14250 Nr2f2 protein_coding 0.0297935811275799 9.94 1 0 1 20 64 32 11 3 5 chr7 106317313 106317363 13889 Dgat2 protein_coding 0.0305562844867885 15.09 1 0 0.111 22 43 27 17 8 18 chr7 139915808 139915858 52766 Fam53b protein_coding 0.437490017615245 22.07 2 0 0.444 20 37 42 22 1 13 chr8 26711982 26712032 -66 Whsc1l1 protein_coding 0.0104350285447415 10.02 0 0 0.966 32 48 32 10 5 8 chr10 79167071 79167121 -157 Bsg protein_coding 0.0936057144299415 23.62 2 0 0.077 35 31 46 10 6 7 chr11 101451058 101451108 3772 Tmem106a processed_transcript 0.190762449164698 2.93 0 1 0.042 34 35 29 15 9 13 chr19 47165272 47165322 39 Pdcd11 protein_coding 0.136466631109849 16.48 0 0 0.971 24 27 42 21 3 18 chr1 37398913 37398963 -7921 ENSMUST00000141402 processed_transcript NA NA 2 0 0.039 25 47 32 18 2 10 chr1 94926413 94926463 23527 Aqp12 protein_coding 0.338086652336355 21.83 0 0 0.502 35 60 15 10 5 9 chr2 119699025 119699075 -35 ENSMUST00000069398 pseudogene 0.0781736789989888 1.65 3 0 1 27 50 33 11 3 10 chr3 3007309 3007359 -500696 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 20 10 30 16 26 32 chr3 25427302 25427352 -17615 ENSMUST00000157320 rRNA NA NA 1 0 0.022 19 20 30 26 14 25 chr3 69526629 69526679 -248 protein_coding NA NA 2 0 0.102 36 44 26 7 2 19 chr6 86476721 86476771 -431 Pcbp1 protein_coding 0.249429379421545 18.13 0 0 1 43 42 25 12 6 6 chr8 95753005 95753055 488 Es22 protein_coding 0.996100413685781 0 2 0 0.018 47 21 30 14 5 17 chr8 129227706 129227756 -110395 Irf2bp2 protein_coding 0.0259458039671114 21.77 0 0 0.026 29 25 41 17 4 18 chr11 52173755 52173805 -582 Vdac1 protein_coding 0.112203973001015 7.22 0 0 0.327 28 37 37 22 4 6 chr11 95721019 95721069 -556 ENSMUST00000153795 processed_transcript NA NA 1 0 0.142 33 41 25 17 2 16 chr14 32644143 32644193 -567 Ankrd28 protein_coding 0.303246358732126 16.73 1 0 0.996 36 51 18 11 4 14 chr14 87815734 87815784 -730 Tdrd3 protein_coding 0.729285119617226 22.11 1 0 0.97 27 32 36 14 9 16 chr15 85502224 85502274 -34784 ENSMUST00000083674 miRNA 0.663953082870503 5.24 0 1 0.989 23 66 18 17 4 6 chr17 5132479 5132529 -20385 ENSMUST00000122283 unprocessed_pseudogene NA NA 0 0 0.731 31 28 36 14 4 21 chr17 13407126 13407176 -6903 Smok2a protein_coding NA NA 0 0 0 20 16 28 19 17 34 chr18 65557620 65557670 -32972 Malt1 protein_coding 0.241849115591240 12.71 2 0 0.061 44 31 23 8 5 23 chr1 166345411 166345461 43050 Atp1b1 protein_coding 0.220570646858856 11.21 1 0 0.024 31 46 26 13 1 16 chr4 145740556 145740606 8428 1700029I01Rik protein_coding 0.96525694818934 10.85 0 0 0 24 27 31 22 9 20 chr5 138228019 138228069 -101 Mepce protein_coding 0.172112401784721 7.81 0 0 1 24 49 37 5 6 12 chr7 52075488 52075538 1706 Nup62 processed_transcript 0.0190058135903791 19 1 0 1 20 39 35 10 8 21 chr7 54051385 54051435 -13 Hps5 protein_coding 0.493127228346418 3.07 1 0 1 29 63 20 11 1 9 chr8 96911419 96911469 1044 Herpud1 protein_coding 1.33390191519315e-05 12.5 1 0 0.999 24 56 30 11 3 9 chr9 43891798 43891848 -1180 Usp2 protein_coding 0.00467964559120413 11.64 0 0 0.042 17 40 43 21 3 9 chr10 44147933 44147983 30596 Prdm1 protein_coding 0.271434544908732 5.74 1 0 1 22 31 42 21 4 13 chr10 79850595 79850645 -216 Mex3d protein_coding 0.381822956865954 6.65 0 0 0.629 33 44 24 9 3 20 chr11 106376550 106376600 14016 ENSMUST00000116890 snoRNA 0.476257700358662 23.9 1 0 0.297 24 39 34 17 4 15 chr15 81958242 81958292 -85 Ccdc134 protein_coding 0.195454314626249 18.08 0 0 1 29 48 28 22 1 5 chr15 103070395 103070445 -173 Cbx5 protein_coding 0.0596494570873247 23.24 0 1 1 41 32 23 14 6 17 chr16 91359877 91359927 -9873 ENSMUST00000083877 snRNA NA NA 0 0 0 30 45 21 17 4 16 chr18 64821089 64821139 -193 Atp8b1 protein_coding 0.894937461744876 23.83 1 0 1 31 33 32 14 9 14 chr1 121401443 121401493 -97 Ralb protein_coding 0.424467452963873 2.44 1 0 0.096 34 40 24 18 3 13 chr2 128769747 128769797 41 Zc3h8 protein_coding 0.062391517339402 12.28 0 0 0.054 28 43 34 16 4 7 chr4 135511987 135512037 -3630 Hmgcl processed_transcript 0.0285940662359874 9.07 1 0 0 44 13 41 17 4 13 chr5 90996881 90996931 6662 protein_coding NA NA 0 0 0.356 45 35 26 8 4 14 chr7 152242330 152242380 -116581 Ccnd1 protein_coding 0.00650288735893548 9.44 0 0 0.076 19 52 19 15 5 22 chr11 60230678 60230728 56 4933439F18Rik nonsense_mediated_decay 0.0482559243951865 12.52 2 0 1 25 39 35 15 1 17 chr11 75008577 75008627 1317 Rtn4rl1 protein_coding 0.0076234338929969 22.01 0 0 1 21 61 21 15 5 9 chr12 60232218 60232268 1462 Ctage5 protein_coding 0.0340104426102812 11.67 0 1 0.987 25 35 34 19 4 15 chr13 59113003 59113053 203767 Ntrk2 protein_coding 0.146827079506408 4.27 0 0 0.65 44 49 20 7 3 9 chr17 3038069 3038119 6639 ENSMUST00000089221 retrotransposed 0.135196639277901 21.92 0 0 0 18 18 34 24 12 26 chr19 41459656 41459706 -73 Pik3ap1 protein_coding 0.136858879789534 4.04 0 0 1 20 43 28 21 4 16 chr4 40917912 40917962 -2 Nfx1 protein_coding 0.0124809506609245 7.75 0 0 0.937 33 46 26 11 5 10 chr5 148133941 148133991 -50 Prhoxnb protein_coding NA NA 1 0 0.046 38 38 26 11 3 15 chr10 79794640 79794690 1718 Reep6 protein_coding 0.551352941273782 17.93 0 1 0.589 24 35 45 16 3 8 chr11 49989994 49990044 1610 3010026O09Rik nonsense_mediated_decay 0.0402780370917341 3.17 1 0 0.54 44 41 17 8 2 19 chr14 31379685 31379735 17345 Tkt protein_coding 0.820710429208534 3.65 0 0 0.041 23 55 24 13 5 11 chr14 65994611 65994661 406 Zfp395 protein_coding NA NA 0 0 0.16 30 19 35 15 6 26 chr16 45158843 45158893 -30 Atg3 protein_coding 0.477475220191157 5.77 1 0 1 27 63 21 8 4 8 chr19 43856680 43856730 23 Abcc2 protein_coding 0.474731224158668 11.19 1 0 0.995 35 26 30 11 13 16 chr1 89470734 89470784 -20366 Neu2 protein_coding 0.0293903807643373 21.59 0 0 0.027 28 42 33 10 6 11 chr3 121425970 121426020 -532 F3 protein_coding 0.245346704272794 8.08 1 0 0.618 33 41 23 9 5 19 chr4 24825237 24825287 1 Ndufaf4 protein_coding 0.000506836150487387 14.37 0 1 0.488 30 27 40 12 7 14 chr5 116840328 116840378 2456 ENSMUST00000153818 processed_transcript 0.366432967809609 4.44 0 1 0.212 13 42 40 16 5 14 chr7 121466765 121466815 4047 ENSMUST00000102454 miRNA NA NA 0 0 1 28 43 29 10 5 15 chr8 47776907 47776957 47937 ENSMUST00000126988 lincRNA NA NA 1 0 0.199 21 45 21 15 6 22 chr8 124467196 124467246 1583 Car5a protein_coding 0.167635120689404 5.96 0 0 0.246 26 38 23 19 6 18 chr9 21635514 21635564 -4415 Gm6484 protein_coding 0.0908493279296232 17.93 0 0 1 35 29 38 12 4 12 chr9 107982740 107982790 -20 Mst1 protein_coding 0.864062101655807 1.83 0 0 1 29 25 35 17 10 14 chr11 31738546 31738596 5911 ENSMUST00000132857 processed_transcript NA NA 1 0 0.129 34 31 31 17 2 15 chr12 113835580 113835630 8610 Inf2 protein_coding 0.0886472294465221 3.93 3 0 0.171 27 34 31 16 6 16 chr14 47844552 47844602 -35496 Gch1 protein_coding 0.000325361195258946 9.54 0 1 0.697 25 47 33 12 6 7 chr19 3708211 3708261 -68 ENSMUST00000131593 lincRNA NA NA 1 0 0.743 14 57 30 15 5 9 chr19 16854789 16854839 -223 ENSMUST00000051080 pseudogene NA NA 0 1 0.997 28 48 34 9 3 8 chr19 42854443 42854493 -24 Hps1 protein_coding 0.0510493399042261 3.56 0 1 0.993 12 55 28 14 10 11 chr1 135268851 135268901 5012 Etnk2 processed_transcript 0.395407031825076 12.2 0 0 0.826 33 33 30 19 5 9 chr2 164249269 164249319 -18634 Matn4 protein_coding 0.084933595580458 17.2 0 1 0.397 32 22 34 14 5 22 chr3 25444335 25444385 -582 ENSMUST00000157320 rRNA NA NA 0 0 0.179 15 21 18 21 23 31 chr4 11118579 11118629 106 Ccne2 processed_transcript 0.501401592976332 14.46 0 0 0.879 43 40 16 14 5 11 chr4 41702319 41702369 -72 Sigmar1 processed_transcript 0.00117942195922331 1.49 1 0 1 39 27 25 10 4 24 chr4 44085908 44085958 -43 Gne protein_coding 0.000630971896828252 10.68 1 0 0.087 34 42 31 6 2 14 chr4 106136651 106136701 258 Pcsk9 protein_coding 0.535648283223066 8.86 0 1 0.587 28 47 21 11 6 16 chr5 138696977 138697027 43 0910001L09Rik protein_coding 0.95096362856114 15.83 1 0 1 21 39 32 12 6 19 chr8 73840061 73840111 -43253 Haus8 protein_coding 0.471690487822357 19.74 0 1 0.59 18 59 27 11 5 9 chr11 90231099 90231149 51 protein_coding NA NA 1 0 1 25 30 33 15 6 20 chr14 27915103 27915153 62941 Il17rd protein_coding 0.293091752544422 16.36 1 0 0.26 30 24 26 19 10 20 chr1 94926166 94926216 23280 Aqp12 protein_coding 0.338086652336355 21.83 1 0 0.072 33 55 13 12 5 10 chr2 121239221 121239271 99 Catsper2 nonsense_mediated_decay 0.68925078514621 1.01 1 0 0.894 23 53 23 13 6 10 chr3 25417253 25417303 -27664 ENSMUST00000157320 rRNA NA NA 0 0 0.03 19 29 23 20 13 24 chr4 49572989 49573039 -10596 Aldob protein_coding 0.825895725016009 18.99 1 0 0.995 21 33 38 12 8 16 chr5 34083347 34083397 6118 Fgfr3 retained_intron 0.709352482156804 17.59 1 0 0.094 36 35 26 13 10 8 chr6 34677447 34677497 -567 Npn2 protein_coding 0.798525954501904 6.59 0 0 0.029 39 39 20 6 10 14 chr7 36621919 36621969 -33936 Zfp507 protein_coding 0.507788914421163 12.33 1 0 0.96 37 21 24 15 8 23 chr7 107375883 107375933 -226 Pgm2l1 protein_coding 0.150701808437667 11.85 0 0 0.056 35 46 18 13 7 9 chr8 3500451 3500501 -32 Mcoln1 protein_coding 0.0634781625009097 11.35 1 0 1 21 42 37 17 3 8 chr9 54996913 54996963 -264 Ube2q2 protein_coding 0.748646162877843 14.16 0 1 0.531 29 44 25 15 4 11 chr11 59601159 59601209 -37 Pld6 processed_transcript 0.0949453355359044 8.98 0 0 0.308 30 54 22 11 3 8 chr11 72395709 72395759 -8902 ENSMUST00000120676 processed_pseudogene NA NA 1 0 0.041 30 36 31 10 3 18 chr11 118109942 118109992 -87 Cyth1 protein_coding 0.193458625738538 23.81 0 0 0.286 34 46 29 9 5 5 chr17 13406478 13406528 -7551 Smok2a protein_coding NA NA 0 0 0.396 27 23 25 28 9 16 chr17 56323331 56323381 -13 D17Wsu104e protein_coding 0.128865263424391 9.42 0 0 0.997 33 49 24 12 3 7 chr3 3003346 3003396 -504659 Hnf4g protein_coding 0.212121479425123 5.57 1 0 0 22 16 30 21 10 28 chr3 78887119 78887169 61755 Rapgef2 protein_coding 0.456664840511443 9 2 0 1 32 29 32 15 0 19 chr4 146894813 146894863 138 ENSMUST00000118377 processed_pseudogene NA NA 0 0 0.637 27 23 23 21 16 17 chr5 135477295 135477345 -100 ENSMUST00000068193 protein_coding 0.137946039008751 15.12 3 0 1 30 24 34 16 2 21 chr8 73654756 73654806 -5447 protein_coding NA NA 0 0 0 24 12 30 29 15 17 chr8 122705957 122706007 -4616 Fam92b protein_coding NA NA 0 1 0.977 26 24 34 21 7 15 chr11 58768602 58768652 440 Trim17 protein_coding 0.50279207688153 18.1 1 0 1 30 37 29 14 8 9 chr13 24638823 24638873 -35210 Fam65b protein_coding 0.0769360998447891 3.98 0 0 0.104 31 38 34 11 2 11 chr15 88706176 88706226 13296 Pim3 protein_coding 0.00171830351914160 10.22 0 0 0.344 24 30 36 18 7 12 chr16 30064399 30064449 -1010 Hes1 protein_coding 0.244193504400723 23.55 0 0 1 26 62 17 13 1 8 chr17 5094700 5094750 17394 ENSMUST00000122283 unprocessed_pseudogene NA NA 2 0 0.074 29 20 37 20 4 17 chr19 10092659 10092709 0 Rab3il1 nonsense_mediated_decay 0.376434422372730 20.21 1 0 0.998 31 36 31 14 3 12 chr2 165926196 165926246 -22602 Sulf2 processed_transcript 0.364905975245299 5.56 2 0 0.019 14 44 28 15 3 22 chr2 167906313 167906363 -166 Pard6b protein_coding 0.560215359358975 15.17 0 1 1 26 41 23 17 3 16 chr4 132870936 132870986 7184 Wdtc1 processed_transcript 0.171545301159208 6.85 2 0 0.185 31 44 21 7 3 20 chr6 145814004 145814054 49 Bhlhe41 protein_coding 0.129685992170396 22.5 0 0 1 31 41 31 10 5 8 chr7 135039028 135039078 78 Vkorc1 protein_coding 0.142817204348209 20.71 1 0 1 41 27 32 11 4 11 chr9 98197149 98197199 93 Nmnat3 protein_coding 0.058949827914744 22.19 0 0 0.991 32 43 23 13 4 11 chr11 106389438 106389488 -23881 ENSMUST00000158896 snoRNA NA NA 2 0 0.054 43 46 10 6 5 16 chr14 77212216 77212266 223647 9030625A04Rik retained_intron 0.491122045093811 22.24 0 0 0.986 23 17 44 22 6 14 chr15 76307678 76307728 -21 Bop1 protein_coding 0.213999172658569 6.83 0 0 0.914 32 32 26 11 7 18 chr17 57075085 57075135 -274 Mllt1 protein_coding 0.0623522689920364 17.18 1 0 1 42 39 22 13 0 10 chrX 137045785 137045835 31397 Tsc22d3 processed_transcript 0.0169221028775023 16.84 1 0 0.831 28 36 26 11 2 23 chr1 163181455 163181505 -130 Prdx6 protein_coding 0.184748625654042 15.67 1 0 0.005 30 31 22 14 12 16 chr2 168546890 168546940 -8453 Atp9a protein_coding 0.0440799714802126 8.45 1 0 0 31 33 35 15 3 8 chr4 141511603 141511653 -1519 Fhad1 processed_transcript 0.427369840422395 16.32 1 0 0.993 16 40 27 22 6 14 chr5 37104256 37104306 -17018 D5Ertd579e processed_transcript 0.328983375758664 15.8 1 0 0.331 28 39 24 19 4 11 chr7 71220191 71220241 -78515 Trpm1 protein_coding 0.160702632394354 18.35 1 0 0 17 11 26 22 14 35 chr7 117264934 117264984 -611 Wee1 protein_coding 0.00320795798089123 11.47 1 0 0.998 24 48 21 16 3 13 chr11 106985826 106985876 7590 Bptf protein_coding 0.0777817267937118 3.68 1 0 0.026 25 46 26 11 5 12 chr11 117515913 117515963 51 Tnrc6c retained_intron 0.220805331888232 6.37 0 0 1 23 58 19 11 1 13 chr13 44086201 44086251 118055 ENSMUST00000158482 snRNA NA NA 1 1 0.362 30 42 22 15 3 13 chr17 56256660 56256710 36 Plin5 protein_coding 0.128768551306098 15.61 1 0 0.804 27 25 32 12 10 19 chr19 6915185 6915235 -95 Rps6ka4 protein_coding 0.224123834461339 4.52 1 0 1 25 50 19 16 4 11 chr1 88609811 88609861 9418 Dis3l2 protein_coding 0.0678471590779961 8.91 1 0 0.217 23 33 34 15 7 12 chr3 3004116 3004166 -503889 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 17 16 28 23 9 31 chr3 127483323 127483373 66 Alpk1 protein_coding NA NA 1 0 0.937 16 40 35 16 7 10 chr4 33335635 33335685 -175 Pnrc1 protein_coding 0.000507399917682915 22.55 1 0 1 30 50 22 9 7 6 chr4 129497204 129497254 -236 Ptp4a2 protein_coding 0.0696919964775544 8.61 1 0 0.998 11 52 39 10 3 9 chr6 86476518 86476568 -228 Pcbp1 protein_coding 0.249429379421545 18.13 1 0 1 33 46 21 17 3 4 chr7 4102594 4102644 -643 Leng9 protein_coding 0.280795973573514 15.35 0 0 0.031 33 37 28 11 5 10 chr7 87562582 87562632 -11489 ENSMUST00000118776 processed_pseudogene NA NA 0 1 0.087 24 47 22 12 3 16 chr8 3211631 3211681 -5644 ENSMUST00000104870 miRNA NA NA 0 1 1 25 43 24 15 5 12 chr9 22001106 22001156 -380 Zfp872 protein_coding NA NA 1 0 0 38 28 24 13 8 13 chr14 65993776 65993826 -429 Zfp395 protein_coding NA NA 0 0 0.139 26 35 29 21 5 8 chr15 76039598 76039648 -28 Plec protein_coding 0.411155291713237 9.85 0 0 0.687 33 23 33 18 5 12 chr17 3036774 3036824 7934 ENSMUST00000089221 retrotransposed 0.135196639277901 21.92 0 0 0 22 21 27 14 10 30 chr17 24994953 24995003 7285 Hagh protein_coding 0.0323196877750537 11.34 0 0 0.438 32 20 32 15 8 17 chr2 104689870 104689920 138 Prrg4 protein_coding 0.00333374206167785 7.81 0 0 0.025 29 33 23 17 5 16 chr3 107820407 107820457 292 Gstm1 protein_coding 0.0268793298017581 5.86 0 0 0.011 32 42 21 15 1 12 chr5 43485787 43485837 -139383 Cpeb2 protein_coding 0.48245884254282 4.64 1 0 1 22 28 30 18 3 22 chr5 140298103 140298153 -2257 Tmem184a protein_coding 0.087431784684047 4.79 1 0 0.738 15 42 28 16 7 15 chr8 124984701 124984751 -93 Snai3 protein_coding 0.817574113976982 11.62 1 0 0.995 32 37 23 17 3 11 chr12 102267343 102267393 -175 Ccdc88c protein_coding 0.127772373732253 17.26 0 0 0.038 22 34 35 19 6 7 chr17 3038841 3038891 5867 ENSMUST00000089221 retrotransposed 0.135196639277901 21.92 0 0 0 22 18 26 23 9 25 chr18 38367874 38367924 1517 Pcdh1 protein_coding 0.356659983367697 1.85 1 0 0.729 35 38 16 14 8 12 chr19 23211075 23211125 1710 ENSMUST00000058189 protein_coding NA NA 2 0 1 41 47 16 12 4 3 chr2 146838728 146838778 21 Xrn2 protein_coding 0.26023002641393 9.11 1 0 1 23 46 26 11 4 12 chr2 172845528 172845578 -1850 Rbm38 protein_coding 0.78971259927891 12.34 0 0 0.029 31 42 17 13 2 17 chr3 3007598 3007648 -500407 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 16 7 32 18 18 31 chr4 117559933 117559983 -20 Atp6v0b nonsense_mediated_decay 0.0800411084606789 11.52 1 1 1 17 48 30 13 5 9 chr4 147412943 147412993 -38 Clcn6 protein_coding 0.077432327200439 23.24 1 0 1 27 44 31 9 1 10 chr5 64203637 64203687 -72 0610040J01Rik protein_coding 0.0162180667093055 10.63 0 1 0.999 34 38 24 13 3 10 chr5 125501750 125501800 1815 Ncor2 retained_intron 0.0647028391337913 13.36 2 0 0.191 31 43 19 15 2 12 chr7 73224496 73224546 -14 H47 protein_coding 0.309860059094516 11.22 1 0 0.919 21 59 20 13 3 6 chr8 75167063 75167113 -3582 Nwd1 protein_coding NA NA 0 0 0 23 29 27 21 5 17 chr10 41997506 41997556 -970 Foxo3 protein_coding 0.0124161653623989 10.63 1 0 1 20 47 22 17 6 10 chr11 61354316 61354366 3474 Epn2 protein_coding 0.176415161020219 23.7 0 0 0.451 20 44 29 12 1 16 chr11 78364384 78364434 -130 Tmem97 protein_coding 0.173124063534819 12.17 0 0 0.332 31 32 30 12 10 7 chr13 32886573 32886623 -7309 Wrnip1 protein_coding 0.0268086795412842 23.21 0 1 0.102 26 22 29 19 7 19 chr13 35832769 35832819 78790 ENSMUST00000083244 snRNA NA NA 1 0 0.962 19 26 38 18 4 17 chr14 45839077 45839127 -2 Txndc16 protein_coding 0.282695523895213 4.36 1 0 1 21 48 31 18 2 2 chr15 78661669 78661719 -11383 Cdc42ep1 protein_coding 0.848693247583063 14.35 1 0 0.099 32 20 32 20 3 15 chr18 44661835 44661885 121679 Dcp2 protein_coding 0.573002586489811 7.95 0 0 0.14 28 38 22 8 9 17 chr19 44099551 44099601 4113 Cyp2c44 protein_coding 0.618809023170487 10.1 2 0 0.135 53 37 15 5 4 8 chr1 71603749 71603799 -13 Atic retained_intron 0.194053532103475 18.54 1 0 0.287 26 47 28 12 1 7 chr1 193269356 193269406 -48461 Ppp2r5a protein_coding 0.432153774860358 7.19 1 0 0.392 30 25 31 14 7 14 chr2 3336344 3336394 32 Meig1 protein_coding 0.0758348376983853 0.76 1 0 0.985 24 31 39 14 2 11 chr4 10851450 10851500 -22280 ENSMUST00000117608 processed_pseudogene NA NA 1 0 0.347 20 37 24 14 5 21 chr4 62891083 62891133 -4212 Col27a1 nonsense_mediated_decay 0.000236492707682813 15.9 1 0 0.792 20 26 35 14 4 22 chr4 146710344 146710394 11486 Gm13235 protein_coding NA NA 0 0 0 13 22 20 27 13 26 chr4 153871995 153872045 30854 Prdm16 processed_transcript 0.144547730153045 19.97 3 0 0.035 39 29 25 9 5 14 chr5 104219060 104219110 5707 Aff1 retained_intron 0.0362923552874656 4.03 1 0 0.126 32 21 31 10 6 21 chr5 124686260 124686310 -19858 Pitpnm2 protein_coding 0.0601814243553198 10.79 2 0 0.092 20 39 29 14 3 16 chr8 122715179 122715229 -13838 Fam92b protein_coding NA NA 1 0 1 17 33 43 13 7 8 chr9 107874150 107874200 -3723 Uba7 protein_coding 0.0659807456417554 21.86 1 0 0.034 17 30 38 19 3 14 chr11 20247848 20247898 -11780 Gm10481 protein_coding 0.481581185969881 5.13 2 0 0.929 25 48 11 16 3 18 chr11 69486088 69486138 -188 Eif4a1 protein_coding 0.0399749534912092 10 1 0 1 27 36 23 11 4 20 chr11 74651347 74651397 402 Mnt protein_coding 0.231546067721028 22.37 1 0 0.998 23 47 25 7 9 10 chr15 54402806 54402856 -209 Mal2 protein_coding 0.0201344025655724 18.7 1 0 1 27 42 29 11 2 10 chr15 58820575 58820625 55235 Ndufb9 protein_coding 0.138715989842778 3.22 2 0 0.064 36 29 22 12 3 19 chr15 76038736 76038786 -78 Plec protein_coding 0.411155291713237 9.85 0 0 0.71 35 24 33 9 5 15 chr15 99696100 99696150 9711 Lima1 protein_coding 0.0174508771542028 8.28 1 1 0.821 40 38 23 7 4 9 chr16 3247199 3247249 -2360 ENSMUST00000116737 miRNA NA NA 0 0 0.036 25 23 20 25 14 14 chr1 167525099 167525149 -23017 ENSMUST00000158666 snoRNA NA NA 1 0 0.07 16 28 39 21 1 15 chr2 30034059 30034109 -105 D2Wsu81e retained_intron 0.441187094522909 14.32 1 0 0.782 29 23 39 14 3 12 chr2 160176820 160176870 15956 Mafb protein_coding 0.121092517091210 12.04 1 0 0.042 19 38 32 19 4 8 chr3 78887880 78887930 60994 Rapgef2 protein_coding 0.456664840511443 9 1 0 0.639 28 34 28 12 5 13 chr4 46402064 46402114 201 5830415F09Rik nonsense_mediated_decay 0.96887487147756 17.72 3 0 0.987 39 24 28 13 5 11 chr4 138560286 138560336 31487 Tmco4 processed_transcript 0.584097711137258 6.27 1 0 0.325 36 18 27 14 7 18 chr4 144547215 144547265 15820 protein_coding 0.505879132744824 8.69 0 0 0.746 32 50 14 8 5 11 chr5 24083218 24083268 -26 Abcf2 protein_coding 0.652126596240957 14.88 0 0 1 19 56 22 11 2 10 chr6 54411043 54411093 -10928 Wipf3 processed_transcript 0.0380655306036032 9.51 1 0 0.076 23 45 30 13 2 7 chr6 144019146 144019196 48743 ENSMUST00000156994 processed_transcript 0.765671570077476 19.41 0 1 0.272 21 27 44 14 6 8 chr6 145777889 145777939 9450 ENSMUST00000058538 retrotransposed 0.995858004565534 0.22 1 0 0.071 26 27 28 14 10 15 chr7 71219725 71219775 -78981 Trpm1 protein_coding 0.160702632394354 18.35 0 0 0 20 18 34 12 14 22 chr9 108303583 108303633 8443 1700102P08Rik protein_coding 0.607980514262474 3.95 0 1 0.987 24 28 34 14 6 14 chr11 60693150 60693200 -401 Tmem11 protein_coding 0.455942013044362 6.62 1 0 0.223 25 25 38 16 5 11 chr11 98815408 98815458 -6293 Rara protein_coding 0.270276071811996 16.33 1 0 0.342 16 49 27 14 1 13 chr12 33505031 33505081 -284 Nampt protein_coding 0.0204632777896449 13.79 0 0 0.309 25 39 23 17 7 9 chr12 56639466 56639516 -26735 Aldoart2 protein_coding 0.906379875632038 4.06 0 0 0.044 24 11 25 19 15 26 chr13 53163429 53163479 -87012 Nfil3 protein_coding 0.00040445455252189 22 0 0 0.044 17 53 23 9 4 14 chr15 88701437 88701487 8557 Pim3 protein_coding 0.00171830351914160 10.22 0 0 0.881 20 46 26 15 4 9 chr17 84587818 84587868 -556 Zfp36l2 protein_coding 0.227485129780447 7.72 1 0 1 25 32 34 20 0 9 chr19 46742977 46743027 1001 Cyp17a1 retained_intron 0.439906664187570 2.54 0 0 0.452 33 32 23 16 3 13 chr1 13650684 13650734 -82 Lactb2 protein_coding 0.714598660550645 18.43 0 1 0.087 26 30 24 20 8 11 chr1 195116395 195116445 -11800 Lamb3 protein_coding 0.458255483706085 10.85 1 0 0.254 37 26 18 10 5 23 chr2 152185539 152185589 6039 ENSMUST00000075093 pseudogene 0.685243451495967 20.83 0 0 0.084 20 57 21 10 5 6 chr4 101378034 101378084 -11950 Lepr protein_coding 0.321784267418940 3.62 1 0 0.046 29 39 24 15 3 9 chr5 65884058 65884108 27 1110003E01Rik nonsense_mediated_decay 0.000446669992711664 15.71 0 0 1 31 30 24 17 2 15 chr5 119787857 119787907 40628 ENSMUST00000122599 rRNA NA NA 1 0 0.738 31 23 35 9 3 18 chr5 136410474 136410524 -13 Ywhag processed_transcript 0.0206935098657502 17.1 0 0 1 24 30 34 16 5 10 chr7 108763964 108764014 -34314 Art2b protein_coding 0.182177243942374 3.52 0 0 0 27 32 24 21 1 14 chr10 114688481 114688531 17 Tbc1d15 protein_coding 0.110197032360074 9.08 1 1 1 33 36 23 14 4 9 chr12 8461341 8461391 45072 Rhob protein_coding 0.278239974306348 13.23 1 0 0.024 29 32 26 13 5 14 chr12 106101954 106102004 1307 Clmn protein_coding 0.000970385814776883 9.44 2 0 0.991 32 27 20 17 10 13 chr15 96291742 96291792 -493 Sfrs2ip protein_coding 0.173718398509348 0.07 1 0 0.278 29 39 20 15 1 15 chr17 74393211 74393261 3960 Srd5a2 protein_coding 0.578954230396665 14.56 0 0 0.997 28 29 24 16 6 16 chr18 36838859 36838909 136 Apbb3 protein_coding 0.647227069948927 14.19 0 0 0.181 24 28 34 12 3 18 chr18 46795014 46795064 37652 Eif1a protein_coding 0.0287988436203803 16.84 2 0 0.154 21 39 29 13 2 15 chr18 81396257 81396307 172770 ENSMUST00000158632 snRNA NA NA 5 0 0.378 16 46 30 13 3 11 chr19 36787809 36787859 -7703 ENSMUST00000149601 processed_transcript 0.226605469780881 10.51 0 0 0 18 42 31 9 6 13 chr1 74854410 74854460 16345 Wnt10a protein_coding 0.464588102308236 23.59 1 0 0.429 19 46 25 16 5 7 chr1 158587822 158587872 742 Tor3a processed_transcript 0.478984951338515 2.34 1 0 0.134 19 23 39 18 9 10 chr2 65106909 65106959 -8540 ENSMUST00000118148 processed_pseudogene NA NA 1 0 0.288 22 42 27 12 6 9 chr4 43059074 43059124 -7 B230312A22Rik protein_coding 0.255502465083032 9.01 1 0 1 26 37 26 15 4 10 chr4 133913121 133913171 8193 Extl1 processed_transcript 0.482930435343027 15.35 0 0 0.025 29 29 21 15 7 17 chr9 21889789 21889839 5 Ecsit protein_coding 0.382173945813513 12.22 1 0 0.856 26 31 28 15 5 13 chr10 21721602 21721652 5230 Sgk1 retained_intron 0.119716824584708 11.55 0 1 0.974 34 21 27 14 5 17 chr10 79820997 79821047 300 Plk5 retained_intron 0.132380645525429 16.14 1 0 1 29 38 21 8 3 19 chr11 60590819 60590869 23 Top3a protein_coding 0.98081200136346 9.11 0 0 0.996 26 34 26 12 6 14 chr14 46008540 46008590 -90 Gnpnat1 protein_coding 0.515000014140919 3.31 0 0 1 29 36 23 16 6 8 chr15 81633496 81633546 670 Tef protein_coding 0.000118217645722963 11.4 1 0 0.989 33 15 26 17 11 16 chr15 83986469 83986519 -11772 Pnpla3 protein_coding NA NA 1 0 0.159 17 29 23 16 6 27 chr3 131015543 131015593 -9417 Cyp2u1 protein_coding 0.353241474449338 12.16 0 1 0.28 32 27 29 17 2 10 chr4 117794900 117794950 12562 St3gal3 protein_coding 0.107483124190775 6.43 0 1 0.075 25 25 32 12 7 16 chr4 146900491 146900541 1767 ENSMUST00000117417 processed_pseudogene 0.266515126674743 6.86 0 0 0 18 21 16 29 15 18 chr5 66453674 66453724 -2584 protein_coding NA NA 1 0 0.031 18 31 36 13 12 7 chr7 31019485 31019535 1234 protein_coding NA NA 1 0 1 35 22 27 14 6 13 chr8 126185522 126185572 7718 Rhou protein_coding 0.0180448486867908 4.07 0 0 0.073 28 46 19 11 3 10 chr10 80377365 80377415 3600 Lmnb2 protein_coding 0.104925608913375 23.32 1 1 0.715 16 33 34 14 5 15 chr10 127388567 127388617 1639 ENSMUST00000158062 snoRNA NA NA 1 0 0.235 29 34 22 12 4 16 chr11 75027064 75027114 19804 Rtn4rl1 protein_coding 0.0076234338929969 22.01 0 0 0.145 33 27 31 7 7 12 chr12 103196523 103196573 -97 Atxn3 protein_coding 0.0655339196773987 9.2 1 0 0.978 17 61 24 8 2 5 chr15 89307844 89307894 1202 ENSMUST00000136218 lincRNA 0.556432188329346 11.38 1 0 0.034 28 43 23 10 4 9 chr17 35862559 35862609 -21018 Ddr1 protein_coding 0.307938698624295 1.39 1 0 0.027 25 27 34 19 6 6 chr2 27102333 27102383 10 Sardh protein_coding 0.841961569278482 19.97 0 1 0.548 29 33 30 11 4 9 chr4 141414673 141414723 -12426 Ctrc processed_transcript 0.857224026242488 5.72 1 0 0.997 19 28 39 18 1 11 chr4 146799421 146799471 -18134 ENSMUST00000120609 processed_pseudogene NA NA 1 0 0.347 17 24 19 28 10 18 chr5 23933980 23934030 -21 Slc4a2 protein_coding 0.0324810254417318 9.43 1 0 1 25 48 16 12 5 10 chr9 21511094 21511144 16775 ENSMUST00000130304 lincRNA NA NA 0 1 0.33 21 36 30 15 4 10 chr9 44295729 44295779 -8067 Gm10023 protein_coding NA NA 2 0 1 20 18 40 14 7 17 chr10 79744113 79744163 970 Dazap1 retained_intron 0.0147698114856608 9.06 2 0 1 23 39 23 11 8 12 chr11 5398510 5398560 -308 ENSMUST00000149826 processed_transcript NA NA 1 0 0.588 24 39 18 11 4 20 chr11 74645679 74645729 1282 Mnt protein_coding 0.231546067721028 22.37 1 0 1 29 37 28 12 4 6 chr11 106904782 106904832 213 Bptf processed_transcript 0.0777817267937118 3.68 1 0 0.042 18 44 20 13 5 16 chr11 120439664 120439714 3005 Arhgdia protein_coding 0.844513842253962 4.63 1 0 1 24 26 30 15 10 11 chr15 83986707 83986757 -11534 Pnpla3 protein_coding NA NA 0 1 0.257 18 28 25 13 7 25 chr16 97973583 97973633 11490 Ripk4 protein_coding 0.182823835872788 11.66 1 0 0.042 28 18 42 15 5 8 chr17 23570254 23570304 88399 ENSMUST00000157974 miRNA NA NA 0 0 0 34 9 17 18 9 29 chr17 34259308 34259358 -71 Brd2 protein_coding 0.160987433112689 10.83 1 0 0.988 16 45 28 17 1 9 chr18 14941669 14941719 -58427 Taf4b protein_coding 0.402765182471118 11.81 1 0 1 31 43 25 12 2 3 chr18 21089945 21089995 -13156 Rnf125 protein_coding 3.51944997028894e-06 0.2 1 0 0.055 28 29 24 9 8 18 chr18 76781389 76781439 379851 Smad2 protein_coding 0.437318934084282 5.86 0 0 0.382 30 50 12 9 5 10 chr19 46835967 46836017 -94 Cnnm2 protein_coding 0.324270781318631 6.7 0 0 1 34 37 21 15 2 7 chrX 166407767 166407817 -3025 Mid1 processed_transcript 0.537874160160485 23.76 1 0 0.236 12 6 20 20 19 39 chr2 71712095 71712145 320 Pdk1 processed_transcript 0.0262688436205494 9.43 0 0 0.052 29 32 22 14 6 12 chr2 132425052 132425102 1145 ENSMUST00000099333 protein_coding NA NA 0 0 0.616 10 53 36 10 1 5 chr2 152189380 152189430 -5015 ENSMUST00000089083 protein_coding NA NA 0 0 0.557 45 31 18 8 4 9 chr3 145287900 145287950 25019 Cyr61 protein_coding 0.201697805285820 7.18 1 0 0.364 32 38 25 11 1 8 chr4 40647438 40647488 2286 Aptx processed_transcript 0.268663601304966 7.58 1 0 0.07 21 41 20 9 2 22 chr6 113646903 113646953 -116 Tatdn2 protein_coding 0.779215105858858 17.01 1 0 0.994 38 24 18 15 6 14 chr10 76863977 76864027 16597 Adarb1 retained_intron 0.117594034028277 7.93 3 0 0.035 24 34 22 17 7 11 chr11 101846212 101846262 -124 Dusp3 protein_coding 0.0728915669082404 9.93 0 0 0.077 18 32 26 12 8 19 chr15 96861736 96861786 24626 Slc38a4 protein_coding 0.0891367801056864 8.76 2 0 1 29 38 24 12 3 9 chr17 13405674 13405724 7791 Gm10512 protein_coding 0.52128626101774 14.39 1 0 0.083 21 19 24 21 9 21 chr17 29183273 29183323 5686 Sfrs3 retained_intron 0.0989972002492237 19.43 0 0 0.271 31 24 24 19 1 16 chr1 13650338 13650388 264 Lactb2 protein_coding 0.714598660550645 18.43 1 0 0.998 33 23 22 18 3 15 chr1 182339188 182339238 24896 Gm10001 protein_coding NA NA 2 0 0.187 36 36 17 16 3 6 chr4 40776080 40776130 24933 B4galt1 protein_coding 0.0187922369566795 12.04 0 0 1 25 33 34 11 5 6 chr4 128923702 128923752 1960 C77080 protein_coding 0.0142475155225259 7.71 1 0 0.996 24 30 26 13 12 9 chr4 150419053 150419103 -304 Per3 protein_coding 0.0319430223617618 9.92 0 0 0.446 22 38 26 16 4 8 chr5 89345892 89345942 -17640 Slc4a4 protein_coding 0.0462997446230196 5.79 2 0 0.111 25 30 31 9 8 11 chr5 119788085 119788135 40856 ENSMUST00000122599 rRNA NA NA 0 0 0.571 28 18 36 11 1 20 chr5 135485609 135485659 58 Abhd11 retained_intron 0.84351456631707 16.91 1 0 0.924 26 47 18 11 4 8 chr7 26404357 26404407 -51 Atp5sl protein_coding 0.0494220889284865 4.78 1 0 0.928 22 38 27 9 1 17 chr10 62114252 62114302 -311 Ddx50 protein_coding 0.480870271559613 15.18 0 0 0.097 27 35 21 18 0 13 chr11 121111660 121111710 -5123 Foxk2 protein_coding 0.0256695875983016 10.84 1 0 1 25 38 15 19 8 9 chr14 21299214 21299264 -85 Anxa7 protein_coding 0.00354757328305524 10.64 2 0 0.888 21 31 32 16 3 11 chr17 45962954 45963004 58835 ENSMUST00000132137 lincRNA NA NA 1 0 0.153 31 28 17 21 4 13 chr18 6136184 6136234 -113 Arhgap12 protein_coding 0.399043271510239 13.1 2 0 0.096 24 32 31 13 2 12 chr18 85026427 85026477 5646 Cyb5 protein_coding 0.447332503882400 17.34 1 2 0.029 24 34 25 14 5 12 chr1 40274527 40274577 -7373 Il1r1 protein_coding 0.0153206092548616 12.66 3 0 0.214 27 44 24 9 2 7 chr1 54602282 54602332 12160 Pgap1 protein_coding NA NA 2 0 0.126 42 23 13 12 2 21 chr2 26812793 26812843 -712 Rexo4 processed_transcript 0.580633142519724 11.35 1 0 0.312 31 38 32 7 0 5 chr4 108000898 108000948 129 2010305A19Rik processed_transcript 0.00578903260012586 15.71 1 0 1 29 35 27 11 3 8 chr4 132833846 132833896 -164 Tmem222 protein_coding 0.9835049050155 5.76 1 0 0.734 20 42 30 12 1 8 chr5 28118298 28118348 -444 Paxip1 protein_coding 0.0767624996840191 15.01 0 0 0.117 27 36 20 14 3 13 chr5 140267785 140267835 322 Mafk processed_transcript 0.195851271257007 6.53 2 1 0.388 24 36 21 14 3 15 chr6 108241674 108241724 78587 Itpr1 protein_coding 0.154117144502667 15.45 1 1 0.928 18 35 30 13 5 12 chr7 106374156 106374206 12923 Mogat2 processed_transcript 0.690878554851295 2.96 1 0 0.021 20 26 33 13 4 17 chr8 47470404 47470454 -85966 Acsl1 protein_coding 0.133438251733651 15.74 1 0 0.015 19 47 21 9 5 12 chr8 119964274 119964324 -57881 Plcg2 protein_coding 0.948268942438164 0.64 1 0 0.314 22 39 19 10 3 20 chr9 61576219 61576269 -171953 ENSMUST00000104629 miRNA NA NA 1 0 0.045 24 23 30 12 7 17 chr10 120496575 120496625 -24211 Wif1 processed_transcript 0.485703587250972 5.73 1 0 0.81 16 38 27 16 1 15 chr12 113369353 113369403 287 ENSMUST00000083640 miRNA NA NA 1 0 0.07 23 49 19 7 5 10 chr13 85328983 85329033 -74 Ccnh protein_coding 0.478130223174491 1.38 2 0 0.687 39 39 19 6 1 9 chr14 69881170 69881220 21803 Slc25a37 protein_coding 0.0389216967261583 13.58 0 0 0.025 20 27 28 21 2 15 chr15 25643605 25643655 4 Myo10 retained_intron 0.0845962743836751 22.67 1 0 0.006 18 34 33 18 4 6 chr1 154912989 154913039 110886 Nmnat2 protein_coding 0.416144030274685 5.56 0 0 0.361 19 30 39 12 5 7 chr1 182498949 182498999 -81 Parp1 protein_coding 0.334220065947708 22.35 0 0 0.654 21 50 23 5 3 10 chr1 186651136 186651186 -4794 ENSMUST00000157934 miRNA NA NA 2 0 0.033 24 26 31 12 7 12 chr5 90990005 90990055 -214 protein_coding NA NA 2 0 0.936 25 33 18 9 9 18 chr5 111759599 111759649 -159 Pitpnb protein_coding 0.000994435310776735 6.53 1 0 0.507 32 18 29 14 4 15 chr5 124304200 124304250 11222 Niacr1 protein_coding 0.953729908641402 14.18 1 0 0.028 29 35 21 12 8 7 chr7 108530210 108530260 -1106 Arap1 processed_transcript 0.0272190091928169 2.87 1 0 0.024 32 26 23 13 5 13 chr7 126669616 126669666 -177 Acsm5 protein_coding 0.394353223323269 9.25 1 0 0.049 34 33 17 11 2 15 chr7 135075013 135075063 -1420 Prss8 protein_coding 0.0689335169951325 8.18 0 0 0.258 22 23 32 17 2 16 chr7 148642831 148642881 1750 Pnpla2 protein_coding 0.00432732849539463 9.49 0 1 1 17 40 22 14 2 17 chr8 11021347 11021397 -12942 Irs2 protein_coding 0.195788938783652 0.18 0 0 0.385 26 18 33 7 6 22 chr9 44129085 44129135 -742 C2cd2l protein_coding 0.251771363812954 14.83 0 1 0.633 27 36 24 12 3 10 chr10 41238899 41238949 -394 Cd164 protein_coding 0.609620411039551 3.1 0 0 0.826 18 47 20 19 2 6 chr11 7053258 7053308 -6602 Adcy1 processed_transcript 0.68531533743263 18.95 0 0 0.302 35 34 15 7 3 18 chr11 102294147 102294197 73 Grn processed_transcript 0.750601100010946 18.98 0 0 0.018 21 21 41 13 5 11 chr13 64533640 64533690 45 ENSMUST00000155374 lincRNA 0.597035238996108 21.54 1 0 0.465 28 37 20 14 3 10 chr14 26324869 26324919 -44280 ENSMUST00000156682 processed_transcript NA NA 0 0 0.49 28 29 24 11 3 17 chr15 102019393 102019443 56 Csad protein_coding 0.93204160176931 4.06 1 0 1 23 37 29 13 3 7 chr17 34784539 34784589 408 Atf6b protein_coding 0.201519196648629 21.39 0 0 1 26 41 27 8 3 7 chr18 61528032 61528082 29497 ENSMUST00000083601 miRNA NA NA 0 0 0.027 16 35 24 13 5 19 chrX 71558262 71558312 -80 Fam50a protein_coding 0.975693914859439 1.56 0 1 0.211 17 44 27 10 1 13 chr1 135027718 135027768 23 Ppp1r15b protein_coding 0.00731357827155317 15.85 0 0 1 32 27 26 11 2 13 chr2 165764079 165764129 -12763 ENSMUST00000119909 processed_pseudogene NA NA 2 0 0.668 29 24 31 16 3 8 chr4 102185730 102185780 42753 Pde4b processed_transcript 0.0133170929448471 3.7 1 0 0.509 47 31 14 5 1 13 chr5 38880661 38880711 2483 Slc2a9 retained_intron 0.0145672452046098 5.97 1 0 0.203 34 31 22 11 2 11 chr6 124428543 124428593 -13756 Clstn3 protein_coding 0.28234012326166 22.81 1 0 0.297 20 28 26 16 10 11 chr7 27951869 27951919 -73 Egln2 protein_coding 0.270930603346921 9.93 2 0 0.867 29 32 19 12 8 11 chr7 134479370 134479420 9542 Zfp768 protein_coding 0.0641587623774777 5.71 2 0 0.358 42 28 18 7 4 12 chr8 13338403 13338453 -378 Tfdp1 protein_coding 0.103494647998244 12.53 1 0 0.049 19 28 34 10 3 17 chr8 35867990 35868040 -2336 Dusp4 protein_coding NA NA 0 0 0.992 19 51 15 10 7 9 chr8 87497821 87497871 2491 Prdx2 retained_intron 0.389343243278315 9.12 0 1 0.154 28 36 25 8 4 10 chr8 108660879 108660929 -30 Esrp2 protein_coding 0.00080787007783621 1.46 1 0 1 18 39 32 10 7 5 chr9 100543832 100543882 -10 Stag1 protein_coding 0.204298625714645 4.76 0 0 1 23 27 30 14 8 9 chr11 82658636 82658686 933 Rffl protein_coding 0.286970466938761 6.32 2 0 0.375 47 26 13 9 2 14 chr11 97296601 97296651 -973 Arhgap23 processed_transcript 0.0999068571693034 14.35 0 1 0.183 29 26 23 13 8 12 chr11 109857134 109857184 0 Abca8b protein_coding 0.142548962458304 4.43 1 0 0.269 19 46 10 13 2 21 chr16 4377829 4377879 41691 Adcy9 protein_coding 0.276492460602599 5.48 0 0 0.74 34 20 19 16 7 15 chr16 4964480 4964530 42 4930451G09Rik protein_coding 0.778115063453531 9.49 0 1 0.077 27 28 27 15 6 8 chr2 33324138 33324188 -84 Zbtb43 protein_coding 0.0233915029687610 9.89 0 0 0.997 18 33 24 15 7 13 chr4 133637723 133637773 -479 Aim1l retained_intron 0.261590659911997 4.51 2 0 1 21 35 34 15 1 4 chr4 145742693 145742743 6291 1700029I01Rik protein_coding 0.96525694818934 10.85 0 0 0 21 21 15 24 7 22 chr4 145741439 145741489 7545 1700029I01Rik protein_coding 0.96525694818934 10.85 1 0 0 15 13 23 20 17 22 chr4 153871202 153871252 31647 Prdm16 processed_transcript 0.144547730153045 19.97 1 0 0.029 19 32 16 15 8 20 chr6 90494548 90494598 -6210 Aldh1l1 protein_coding 0.00126253888011045 20.75 1 0 0 23 30 29 10 3 15 chr6 97241632 97241682 17022 Frmd4b processed_transcript 0.163110359145892 18.15 2 0 0.396 29 27 23 7 4 20 chr6 121135399 121135449 1508 Pex26 nonsense_mediated_decay 0.000591985792016552 11.53 0 0 0.076 17 41 25 13 6 8 chr6 134122192 134122242 -75366 Etv6 processed_transcript 0.458675894490144 19.7 0 0 1 13 27 32 17 5 16 chr6 146861743 146861793 24657 Ppfibp1 protein_coding 0.288811772663308 4.36 2 0 0.34 28 21 24 17 4 16 chr7 106316672 106316722 14530 Dgat2 protein_coding 0.0305562844867885 15.09 1 0 0.156 30 28 18 13 6 15 chr10 57162851 57162901 43283 ENSMUST00000150743 lincRNA NA NA 0 0 0 23 16 22 17 8 24 chr10 81063748 81063798 45 Tle6 protein_coding 0.932386421887877 4.26 1 0 0.456 17 32 31 11 2 17 chr11 53577293 53577343 -6198 Irf1 protein_coding 0.0183272850066130 2.66 0 0 0.06 19 39 23 15 6 8 chr12 8570143 8570193 8954 ENSMUST00000157193 miRNA NA NA 1 0 0.078 12 43 30 10 4 11 chr12 99759791 99759841 52602 Kcnk10 protein_coding 0.279137209710226 15.31 2 0 0.01 42 32 12 13 3 8 chr15 58880913 58880963 32606 Mtss1 protein_coding 0.00113162867473647 14.08 1 0 0.225 19 37 29 12 3 10 chr18 10599413 10599463 -3686 Esco1 protein_coding 0.0729209026043788 9.41 1 0 0.235 36 23 30 8 3 10 chr1 164478594 164478644 34 Mettl13 protein_coding 0.0120020891857045 10.1 1 0 0.209 23 34 22 18 4 8 chr1 182688236 182688286 32087 Acbd3 protein_coding 0.175707530826398 21.74 1 0 0.046 26 29 21 9 8 16 chr4 133913432 133913482 7882 Extl1 processed_transcript 0.482930435343027 15.35 1 0 0.096 22 25 24 14 5 19 chr4 153331250 153331300 -71 A430005L14Rik protein_coding 0.192803823663109 17.3 1 0 0.113 19 40 15 17 3 15 chr5 28398596 28398646 714 Insig1 protein_coding 0.111961997565842 22.65 2 0 0.998 32 27 17 13 12 8 chr5 74591076 74591126 -220 Rasl11b protein_coding 0.304719747772934 23.48 0 2 0.147 15 42 25 12 7 8 chr5 122161381 122161431 -212 Atxn2 protein_coding 0.0140616678848853 4.25 0 0 1 27 42 20 8 3 9 chr5 140267311 140267361 -131 Mafk protein_coding 0.195851271257007 6.53 0 0 0.408 22 29 18 19 2 19 chr6 86079996 86080046 51943 Add2 protein_coding 0.462302904290723 13 3 0 0.103 20 49 9 13 11 7 chr7 71069692 71069742 -89 Klf13 protein_coding 0.0183790638110541 11.26 0 0 0.097 28 20 28 14 9 10 chr8 122893015 122893065 -119726 Gse1 protein_coding 0.356342356433137 14.89 0 0 0.058 26 20 34 21 1 7 chr9 65932081 65932131 7048 Snx1 retained_intron 0.0343505528780236 3.19 1 0 0.135 28 22 25 10 7 17 chr9 75257135 75257185 645 Mapk6 protein_coding 0.349406082038098 10.28 1 0 1 35 34 18 10 4 8 chr9 114843180 114843230 -100 Gpd1l protein_coding 0.0280307887558671 10.2 1 0 0.975 21 22 34 14 5 13 chr9 121812722 121812772 5165 Ccbp2 protein_coding 0.0573286355959504 17.72 2 0 0.049 28 31 20 14 1 15 chr11 4089337 4089387 2570 Tbc1d10a protein_coding 0.737063003290953 5.82 1 0 1 24 33 25 16 1 10 chr11 20279052 20279102 -42984 Gm10481 protein_coding 0.481581185969881 5.13 0 0 0 16 9 17 21 5 41 chr11 117690296 117690346 -2915 Tk1 protein_coding 0.745130555854382 10.87 1 0 0.47 26 29 20 17 0 17 chr12 73386341 73386391 -48655 Rtn1 protein_coding 0.176466339937038 4.95 0 0 0.072 22 28 26 11 8 14 chr12 88142104 88142154 -8778 ENSMUST00000157778 misc_RNA NA NA 1 0 1 20 32 25 14 11 7 chr14 34260611 34260661 -292 Mapk8 protein_coding 0.157504943097541 16.64 1 0 0.989 24 30 28 16 4 7 chr15 74722455 74722505 -10346 2010109I03Rik protein_coding 0.673121283596208 3.2 1 0 0.161 19 31 22 14 1 22 chr15 85159712 85159762 -7073 Atxn10 protein_coding 0.144227030681764 7.19 0 0 0.278 27 28 26 10 3 15 chr16 32003304 32003354 44 Senp5 protein_coding 0.617691901543643 5.35 0 0 0.957 34 24 23 10 3 15 chr16 44061644 44061694 -33611 Gramd1c protein_coding 0.990936104606758 12.77 0 1 0.182 25 11 37 13 10 13 chr16 70314230 70314280 -77 Gbe1 protein_coding 0.437715767420541 14.83 1 0 0.997 28 35 23 8 4 11 chr17 35035215 35035265 -174 Ehmt2 protein_coding 0.00352715516347107 6.46 0 0 0.17 27 32 26 9 3 12 chr18 38372382 38372432 -2991 Pcdh1 protein_coding 0.356659983367697 1.85 0 0 1 19 24 28 15 9 14 chr19 41462975 41463025 -3392 Pik3ap1 protein_coding 0.136858879789534 4.04 2 0 0.437 34 22 21 16 6 10 chr1 155538394 155538444 23800 Rgs8 processed_transcript 0.459890940923889 10.72 1 0 0.662 39 27 18 10 5 9 chr2 75543357 75543407 555 ENSMUST00000135244 processed_transcript 0.183885248434939 18.49 0 0 0.99 30 33 14 18 3 10 chr3 83669209 83669259 -23749 Tlr2 protein_coding 0.0664061315810688 23.75 1 0 0 16 40 22 10 6 14 chr3 88228601 88228651 435 Slc25a44 protein_coding 0.00748163188992839 18.35 1 0 0.991 24 30 24 18 3 9 chr3 146231280 146231330 28271 Dnase2b protein_coding 0.0295525450266016 17.16 1 0 0.206 24 32 29 13 2 8 chr4 154307760 154307810 -5113 Tnfrsf14 processed_transcript 0.687280880840677 1.48 1 0 0.655 16 36 27 11 6 12 chr5 137755595 137755645 -185 Trip6 protein_coding 0.0283757313228922 7.09 0 0 0.854 25 36 20 11 7 9 chr7 127315973 127316023 -1374 Anks4b protein_coding 0.441750465122379 5.76 1 0 0 26 17 28 14 10 13 chr7 135075498 135075548 -1905 Prss8 protein_coding 0.0689335169951325 8.18 1 0 0.018 21 25 22 21 5 14 chr9 20969562 20969612 -571 Pde4a protein_coding 0.402519080206729 15.86 2 0 1 21 35 22 8 7 15 chr10 82240957 82241007 -14093 Nfyb protein_coding 0.125938943845969 6.21 1 0 0.041 29 23 22 19 3 12 chr13 113276716 113276766 22424 Il6st protein_coding 0.164546671459827 19.67 2 0 0 17 37 24 13 8 9 chr17 8466067 8466117 -9677 Brp44l protein_coding 0.404854860088004 17.32 1 0 0.409 24 26 21 20 3 14 chr17 13405065 13405115 7182 Gm10512 protein_coding 0.52128626101774 14.39 0 0 0 22 20 9 15 16 26 chr17 87687422 87687472 -4704 Ttc7 nonsense_mediated_decay 0.0593949430335338 3.08 0 1 0.037 16 42 26 9 9 6 chr19 34951371 34951421 1011 Pank1 protein_coding 0.048155606028417 6.46 2 0 0.144 38 33 17 11 3 6 chr1 155997570 155997620 -53632 protein_coding NA NA 0 0 1 15 25 42 18 2 5 chr4 32607665 32607715 5928 ENSMUST00000122662 misc_RNA NA NA 1 0 0.765 34 20 20 13 6 14 chr5 144162348 144162398 -2757 ENSMUST00000061947 pseudogene NA NA 1 0 1 22 26 24 16 11 8 chr6 48384835 48384885 9175 Zfp467 protein_coding 0.0268639540382212 4.97 1 0 0.638 28 31 18 14 2 14 chr7 25184588 25184638 -25 1500002O20Rik protein_coding 0.234088108127830 20.27 1 0 0.992 26 37 24 8 4 8 chr7 152114067 152114117 10010 Ccnd1 retained_intron 0.00650288735893548 9.44 1 0 0.098 21 18 24 24 6 14 chr9 34945833 34945883 -6363 ENSMUST00000157431 snoRNA NA NA 0 0 0.191 20 24 23 17 5 18 chr11 31743434 31743484 10799 ENSMUST00000132857 processed_transcript NA NA 0 0 0.129 24 25 27 9 7 15 chr12 81285110 81285160 -6723 Strm protein_coding NA NA 0 0 0.12 27 20 30 13 3 14 chr14 56501242 56501292 1826 Cbln3 protein_coding 0.832208885362084 10.88 1 0 0.285 18 33 17 16 7 16 chr2 169854978 169855028 41168 ENSMUST00000125190 lincRNA NA NA 0 1 0.018 27 22 26 8 7 16 chr3 151509485 151509535 -8916 Ptgfr protein_coding 0.229968022592917 2.13 1 1 0.762 27 26 24 15 2 12 chr4 33335352 33335402 108 Pnrc1 protein_coding 0.000507399917682915 22.55 1 0 0.979 17 47 20 12 4 6 chr4 140868722 140868772 3938 Epha2 processed_transcript 0.207986516500164 19.03 1 0 0.063 25 22 22 15 10 12 chr5 31350330 31350380 20 Slc5a6 protein_coding 0.00647710793627162 10.3 1 0 0.898 25 36 19 12 1 13 chr6 108416343 108416393 4897 Gm10429 protein_coding NA NA 0 1 0.729 15 29 34 14 4 10 chr8 49841069 49841119 -81050 Odz3 protein_coding 0.0758028264086776 5.76 0 0 1 26 19 27 17 4 13 chr10 3206007 3206057 -5003 Cnksr3 protein_coding 0.0617359307043999 2.81 1 0 0.318 38 25 18 7 3 15 chr10 57164957 57165007 41177 ENSMUST00000150743 lincRNA NA NA 0 0 0.181 15 24 20 14 13 20 chr11 87476131 87476181 -68 Rnf43 retained_intron 0.128034050350711 7.69 0 0 1 22 36 26 9 4 9 chr11 101562297 101562347 -31911 Dhx8 retained_intron 0.298603567235443 11.5 1 1 0.129 28 32 23 11 4 8 chr12 85740938 85740988 872 Entpd5 protein_coding 0.426292583959878 10.14 2 0 0.133 14 38 24 13 8 9 chr14 70204775 70204825 477 Rhobtb2 protein_coding 0.762114211954446 10.52 1 0 1 36 28 13 9 4 16 chr15 59484480 59484530 4297 Trib1 protein_coding 0.211324259307217 14.75 0 0 1 24 25 33 8 2 14 chr15 88682359 88682409 -10521 Pim3 protein_coding 0.00171830351914160 10.22 1 0 0.778 31 24 26 14 6 5 chr17 80495466 80495516 -8786 ENSMUST00000157651 snRNA NA NA 0 0 0 26 33 21 9 5 12 chr18 64648870 64648920 -173 Fech protein_coding 0.0153365878852042 11.85 0 0 0.007 21 27 26 16 3 13 chr18 75688371 75688421 14097 Gm10532 protein_coding NA NA 2 0 1 23 31 25 13 5 9 chr19 36779440 36779490 666 ENSMUST00000149601 processed_transcript 0.226605469780881 10.51 1 0 0.018 28 20 24 12 4 18 chr19 41461876 41461926 -2293 Pik3ap1 protein_coding 0.136858879789534 4.04 1 0 0.181 21 36 23 16 2 8 chr19 47045562 47045612 -8800 Nt5c2 protein_coding 0.391588354699845 6.72 2 0 0.869 18 38 26 11 4 9 chr1 74442284 74442334 1425 ENSMUST00000083534 miRNA NA NA 0 0 1 14 23 25 16 11 16 chr1 78534434 78534484 256 Mogat1 processed_transcript 0.108354526529200 21.11 1 0 0.526 18 34 19 10 5 19 chr1 138520833 138520883 -620 Zfp281 protein_coding 0.00281363242897329 10.88 0 1 1 28 33 25 10 0 9 chr2 118639690 118639740 -24 D2Ertd750e protein_coding 0.127450603706579 5.93 2 0 1 13 44 19 13 6 10 chr3 146258967 146259017 584 Dnase2b protein_coding 0.0295525450266016 17.16 1 0 0.144 34 32 12 7 7 13 chr4 86315955 86316005 -16 Plin2 protein_coding 0.0030462875331765 3.43 1 0 0.328 30 28 24 7 3 13 chr4 117651115 117651165 3499 ENSMUST00000146982 processed_transcript NA NA 0 0 0.065 18 31 29 9 6 12 chr4 130597245 130597295 -30881 ENSMUST00000153810 processed_transcript NA NA 2 0 0.395 20 29 28 16 1 11 chr5 123140754 123140804 6833 ENSMUST00000071235 pseudogene NA NA 2 0 0.046 21 23 22 13 1 25 chr7 73059869 73059919 -12219 Pcsk6 protein_coding 0.88299382347237 5.06 1 0 0.978 23 33 23 12 4 10 chr7 139862626 139862676 -11084 ENSMUST00000132849 processed_transcript NA NA 0 0 0.508 25 18 31 9 4 18 chr8 87514413 87514463 -78 Hook2 protein_coding 6.34570273687827e-05 9.05 1 0 1 17 43 26 14 2 3 chr9 34935376 34935426 -11006 St3gal4 protein_coding 0.00365031294399126 16.03 1 0 0.411 27 27 18 12 7 14 chr9 44113700 44113750 -8 Hinfp protein_coding 0.552222116794386 8.15 1 0 0.782 22 39 22 13 3 6 chr9 74800664 74800714 -2 BC031353 protein_coding NA NA 1 0 1 32 25 27 12 0 9 chr10 80888229 80888279 1605 Nfic protein_coding 0.163229475806681 16.44 1 0 0.931 24 31 20 14 4 12 chr11 78241314 78241364 -5620 Slc13a2 protein_coding 0.302471062049368 22.04 1 0 0.014 21 39 23 9 4 9 chr11 94463480 94463530 -320 Acsf2 protein_coding 0.516878402385405 8.48 2 0 0.291 25 36 21 8 3 12 chr12 113826711 113826761 -259 Inf2 protein_coding 0.0886472294465221 3.93 1 0 0.222 22 48 18 7 1 9 chr14 70940816 70940866 -4320 Reep4 protein_coding 0.0336855399525318 4.44 1 0 1 33 18 28 5 7 14 chr16 4880713 4880763 -423 Fam100a protein_coding 0.308865181935122 15.04 0 0 0.985 19 41 17 11 2 15 chr16 22857651 22857701 -65 Tbccd1 protein_coding 0.137207444599280 17.96 0 0 0.971 20 39 20 14 2 10 chr17 13406086 13406136 -7943 Smok2a protein_coding NA NA 0 0 0.127 31 9 23 13 10 19 chr19 23209464 23209514 99 ENSMUST00000058189 protein_coding NA NA 1 0 1 18 59 13 7 1 7 chr19 57440785 57440835 5276 Fam160b1 protein_coding 0.00186857815528548 10.62 0 1 0.228 21 40 23 8 3 10 chr2 119180969 119181019 4029 Chac1 protein_coding 0.0116854964483253 10 1 0 0.13 24 19 25 10 6 20 chr2 143835643 143835693 1331 Rrbp1 protein_coding 0.000918600974265722 1.84 1 0 0.769 31 21 21 13 1 17 chr4 145704974 145705024 -8936 1700029I01Rik protein_coding NA NA 0 0 0 12 17 16 24 18 17 chr5 66506072 66506122 -16679 Rbm47 protein_coding 0.260233148022191 7.84 2 0 0.327 31 24 23 3 12 11 chr5 99420863 99420913 45210 Prkg2 protein_coding 0.73688483387583 20.87 2 0 0.212 23 29 26 10 8 8 chr5 125055371 125055421 6595 Tctn2 retained_intron 0.44702939587701 4.7 1 0 0 21 33 25 15 1 9 chr6 88682099 88682149 7302 Mgll protein_coding 0.00518484904237372 11.63 1 0 0.037 23 17 28 15 6 15 chr6 141723153 141723203 -847 protein_coding NA NA 2 0 0 19 31 33 10 5 6 chr7 29167280 29167330 -3031 Zfp36 protein_coding 0.374784023231503 9.08 0 0 1 16 45 18 11 7 7 chr7 71221036 71221086 -77670 Trpm1 protein_coding 0.160702632394354 18.35 0 0 0 19 14 20 18 8 25 chr8 13057475 13057525 -3465 Proz protein_coding 0.188283210096909 20.09 0 0 0.299 20 29 25 15 2 13 chr9 106132964 106133014 6426 Alas1 retained_intron 0.00171668737570303 12.9 0 0 0 22 12 31 17 9 13 chr9 106349708 106349758 225 Abhd14a protein_coding 0.169725769803453 23.94 1 0 0.017 32 26 17 12 10 7 chr9 108250179 108250229 5 Usp4 protein_coding 0.101885792160702 6.9 0 0 1 34 29 22 11 1 7 chr10 24431716 24431766 56 Enpp1 protein_coding 0.55550180329741 8.55 0 1 1 23 24 21 16 5 15 chr11 69231145 69231195 -3993 Kdm6b protein_coding 0.586450453561625 12.09 0 0 1 19 35 19 15 8 8 chr11 102050888 102050938 -21 G6pc3 protein_coding 0.803472349423966 22.57 2 0 1 30 36 20 5 0 13 chr12 84430044 84430094 21813 Dpf3 protein_coding 0.510959618326165 0.78 0 0 0.034 13 37 25 14 2 13 chr12 105642339 105642389 -2575 Serpina3n protein_coding 0.22551687291501 22.86 1 1 0.128 30 28 19 8 6 13 chr14 75530943 75530993 2 Lcp1 protein_coding 0.360621858288587 23.56 1 0 1 26 32 23 11 6 6 chr14 119406020 119406070 -106 Uggt2 processed_transcript 0.291368020378436 8.59 2 1 0.013 40 10 26 10 6 12 chr16 21550033 21550083 -18379 Vps8 retained_intron 0.169255943590615 5.27 0 0 0.129 24 22 19 14 9 16 chr16 24121049 24121099 -132136 Bcl6 protein_coding 0.595127545091782 14.33 1 0 0.837 25 38 15 8 1 17 chr17 5095851 5095901 16243 ENSMUST00000122283 unprocessed_pseudogene NA NA 2 0 1 30 28 24 7 10 5 chr18 61597868 61597918 28914 ENSMUST00000158916 snRNA NA NA 0 0 0.57 15 23 29 14 4 19 chr18 84854984 84855034 6 Cndp2 protein_coding 0.0267731000480303 1.48 0 1 0.982 21 42 28 6 4 3 chr19 4036480 4036530 1416 Gstp1 protein_coding 0.00824924777977184 14.9 0 0 0.068 29 26 19 12 3 15 chr19 42120271 42120321 -45 Dhdpsl protein_coding 0.0280629710072563 10.3 0 0 0.997 29 38 15 15 4 3 chr1 74063359 74063409 -18342 Tns1 protein_coding NA NA 0 0 1 22 18 24 13 5 21 chr4 104859424 104859474 29497 Ppap2b protein_coding 0.0226799087716631 8.45 2 0 1 31 30 13 16 2 11 chr4 145705459 145705509 -9421 1700029I01Rik protein_coding NA NA 0 0 0 14 19 22 19 9 20 chr7 25337540 25337590 5352 Xrcc1 protein_coding 0.623597924817277 20.92 1 0 0.662 21 18 25 17 3 19 chr8 116614704 116614754 -42728 Nudt7 protein_coding 0.000685838570006761 12.98 0 1 0.073 19 37 19 11 4 13 chr8 120225366 120225416 -474 Hsd17b2 protein_coding 0.0816125772158663 22.78 1 0 0.962 32 23 23 14 3 8 chr9 14793209 14793259 56670 Panx1 protein_coding 0.637957792223772 21.82 0 0 0.097 17 4 31 20 5 26 chr9 115220041 115220091 -480 Stt3b protein_coding 0.776238056365942 22.65 2 0 1 27 26 26 8 7 9 chr9 119252094 119252144 1541 Acaa1a protein_coding 0.0948486939603183 8.99 2 0 0.619 24 33 15 12 4 15 chr11 68911161 68911211 -1264 Per1 protein_coding 0.0276212817635928 11.19 1 0 0.997 14 31 30 12 1 15 chr15 98447426 98447476 -9387 Adcy6 protein_coding 0.0640723743055239 8.97 0 0 0.44 14 28 22 12 5 22 chr15 98711964 98712014 -154 Rhebl1 protein_coding 0.144928363443695 4.12 1 0 1 22 43 20 9 2 7 chr16 59471766 59471816 143 Mina protein_coding 0.178308495584911 0.11 1 0 0.178 24 36 22 8 4 9 chr1 74443109 74443159 2250 ENSMUST00000083534 miRNA NA NA 0 0 0.849 22 16 14 24 12 14 chr2 164259979 164260029 8682 Sdc4 protein_coding 0.267128016746141 22.27 1 0 0.947 38 28 10 8 6 12 chr3 3008242 3008292 -499763 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 18 14 21 14 12 23 chr3 96379678 96379728 -1204 protein_coding NA NA 1 0 1 32 16 18 9 0 27 chr4 140173286 140173336 -331 Arhgef10l protein_coding 0.049455877652041 2.26 0 1 0.07 24 21 28 18 4 7 chr5 120026930 120026980 -48996 ENSMUST00000156235 processed_transcript NA NA 1 0 0.1 33 13 21 7 10 18 chr5 135625537 135625587 6 Tbl2 nonsense_mediated_decay 0.0208531427187182 13.23 0 0 1 21 29 17 10 5 20 chr8 87284489 87284539 11724 Nfix protein_coding 0.048247799342415 9.28 0 0 0.474 27 21 18 13 6 17 chr8 129259858 129259908 -114268 A630001O12Rik protein_coding NA NA 0 0 1 25 24 17 13 7 16 chr9 102992837 102992887 -21419 Rab6b protein_coding 0.313310061325000 22.26 1 0 0.115 31 33 18 8 5 7 chr9 108667403 108667453 -26239 ENSMUST00000083740 snRNA NA NA 0 0 0.114 19 31 28 11 9 4 chr10 17271808 17271858 -171199 Cited2 protein_coding 0.4921575047407 2.82 2 0 0.154 19 29 21 11 3 19 chr11 6316256 6316306 402 Ppia retained_intron 0.748235479407458 10.75 1 0 0.537 36 23 11 12 3 17 chr11 118748607 118748657 1371 D11Bwg0517e processed_transcript 0.119055232402072 22.2 0 0 0 14 12 38 11 8 19 chr14 8871766 8871816 36334 Abhd6 protein_coding 0.00199096747432993 11.12 0 0 0.811 22 29 27 14 4 6 chr14 70606337 70606387 1082 Sorbs3 protein_coding 0.417840878665072 7.02 0 0 0.992 29 29 18 8 3 15 chr15 38591650 38591700 -24 Atp6v1c1 protein_coding 0.066447756557152 9.43 1 0 1 18 44 16 14 7 3 chr16 4880459 4880509 -169 Fam100a protein_coding 0.308865181935122 15.04 0 0 1 16 49 14 11 3 9 chr16 10525435 10525485 17687 Dexi protein_coding 0.032968745776695 19.92 2 0 0.007 22 18 24 9 9 20 chr16 91727902 91727952 916 Cryzl1 retained_intron 0.0667366319263983 6.62 2 0 0.819 20 32 18 13 8 11 chr17 31925439 31925489 67273 Sik1 protein_coding 0.0223139444403263 13.06 1 0 0.396 29 31 14 12 5 11 chr17 33822422 33822472 -101 Hnrnpm retained_intron 0.522979710126321 15.76 0 0 1 18 37 18 14 5 10 chr18 35658511 35658561 -6 Sil1 protein_coding 0.89309928563252 22.72 0 0 1 32 23 18 12 3 14 chr1 71934501 71934551 -116336 protein_coding NA NA 0 0 0.984 19 21 37 13 2 9 chr1 75658845 75658895 25905 ENSMUST00000121823 processed_pseudogene NA NA 0 0 1 24 32 22 8 5 10 chr2 24906603 24906653 -244 Pnpla7 retained_intron 0.0554397143688187 5.5 1 0 0.872 27 21 26 7 4 16 chr2 122060921 122060971 371 Sord protein_coding 0.0316372265158067 14.48 1 0 0.996 31 31 14 10 1 14 chr2 146328464 146328514 9146 Ralgapa2 protein_coding 0.00701946301389508 6.06 1 0 0.026 17 29 26 9 8 12 chr3 51005760 51005810 -22584 Ccrn4l protein_coding 0.00749966962271438 12.57 2 0 0.274 19 19 33 10 1 19 chr4 140903318 140903368 -386 ENSMUST00000124848 processed_transcript NA NA 1 0 0.111 26 33 14 10 3 15 chr4 146902524 146902574 -266 ENSMUST00000117417 processed_pseudogene 0.266515126674743 6.86 0 0 0.507 14 24 16 24 7 16 chr5 34642026 34642076 -10953 Zfyve28 protein_coding 0.628254191592417 21.96 1 0 0.017 16 20 29 18 5 13 chr6 125262698 125262748 1149 Ltbr protein_coding 0.0126104949511770 8.03 1 0 1 30 9 27 17 3 15 chr7 54051136 54051186 -88 Hps5 protein_coding 0.493127228346418 3.07 0 0 1 17 53 14 11 1 5 chr7 71220695 71220745 -78011 Trpm1 protein_coding 0.160702632394354 18.35 0 0 0 18 15 15 17 14 22 chr7 87781657 87781707 779 ENSMUST00000142678 processed_transcript NA NA 1 0 0.231 23 33 17 10 6 12 chr7 104889687 104889737 -3215 Aqp11 protein_coding 0.124546816126759 14.48 0 0 0.025 13 45 16 9 2 16 chr8 41658019 41658069 -56843 Cnot7 protein_coding 0.0915523665991604 8.18 0 1 0.021 25 20 23 14 6 13 chr9 74768516 74768566 -32150 BC031353 protein_coding NA NA 1 0 0.699 26 30 17 12 3 13 chr10 57162489 57162539 43645 ENSMUST00000150743 lincRNA NA NA 0 0 0 19 16 17 18 10 21 chr11 86621336 86621386 -163 Dhx40 protein_coding 0.160993772270170 15.54 0 0 0.091 27 25 24 13 4 8 chr12 25782200 25782250 -1270 Id2 protein_coding 0.371636076234605 1.6 1 0 0.937 21 39 18 7 3 13 chr12 73750434 73750484 15334 Dhrs7 protein_coding 0.219820695472393 9.92 0 0 0.149 22 35 16 12 5 11 chr12 78063139 78063189 24 Max protein_coding 0.105887052044217 12.21 0 0 1 26 23 28 14 3 7 chr14 31835918 31835968 38 Pbrm1 protein_coding 0.229622905772192 8.31 1 0 1 28 30 17 13 5 8 chr14 69902482 69902532 491 Slc25a37 protein_coding 0.0389216967261583 13.58 0 0 0.036 12 44 15 13 6 11 chr14 71166762 71166812 -352 Xpo7 protein_coding 0.0916059512482262 14.99 1 0 0.006 23 39 22 7 3 7 chr15 7110440 7110490 6105 Lifr protein_coding 0.302300185927834 14.9 0 0 0.17 25 18 25 10 9 14 chr15 7110067 7110117 5732 Lifr protein_coding 0.302300185927834 14.9 1 0 0.057 12 12 32 11 6 28 chr15 96203157 96203207 15976 Arid2 protein_coding 0.0835257910436813 6.91 1 0 1 26 24 19 11 9 12 chr16 31529876 31529926 71699 Bdh1 processed_transcript 0.0013496994717115 8.2 0 1 0.059 26 25 24 13 4 9 chr16 49896385 49896435 -16896 protein_coding NA NA 0 0 0.453 28 19 22 12 6 14 chr18 13027730 13027780 -139 Osbpl1a protein_coding 0.0800438877303538 8.35 1 0 0 21 30 25 12 3 10 chr18 21089607 21089657 -13494 Rnf125 protein_coding 3.51944997028894e-06 0.2 0 1 0.372 17 36 20 10 5 13 chr18 65382571 65382621 -25919 ENSMUST00000083468 miRNA NA NA 0 0 0.025 31 12 27 7 3 21 chr19 7012388 7012438 2868 Gpr137 protein_coding 0.0819350180316543 0.61 1 0 0.259 31 27 21 12 1 9 chr19 7049046 7049096 -467 Ppp1r14b protein_coding 0.242882518541214 12.99 2 0 0.994 30 36 19 6 3 7 chr19 53977396 53977446 -465 Pdcd4 protein_coding 0.186345813734737 3.34 1 0 0.077 23 38 22 9 3 6 chr19 55332170 55332220 3769 Acsl5 protein_coding 0.087772472142106 3.85 1 0 0.068 24 19 22 14 9 13 chr3 3001379 3001429 -506626 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 18 13 17 19 8 25 chr3 3003091 3003141 -504914 Hnf4g protein_coding 0.212121479425123 5.57 1 0 0 20 16 22 15 4 23 chr3 3000727 3000777 -507278 Hnf4g protein_coding 0.212121479425123 5.57 1 0 0 19 15 16 14 12 24 chr3 129235283 129235333 4 Elovl6 protein_coding 0.900517635936178 13.12 0 0 1 26 32 15 8 7 12 chr4 97771115 97771165 -13355 ENSMUST00000092532 pseudogene 0.467775352909044 9.75 1 0 0.049 16 22 26 15 7 14 chr4 100848852 100848902 9153 Jak1 processed_transcript 0.725213929930031 7.72 0 0 0.997 19 27 24 15 9 6 chr4 154745065 154745115 -9620 Prkcz protein_coding 0.195613171840830 9.36 1 0 0.039 17 31 19 14 10 9 chr6 143510285 143510335 -26282 ENSMUST00000132321 processed_transcript NA NA 1 1 0.075 20 17 25 18 7 13 chr7 46522167 46522217 -2288 Gm16387 protein_coding NA NA 0 0 0 19 6 18 15 14 28 chr8 74967511 74967561 233 Calr3 protein_coding 0.420597831941551 0.17 1 0 1 28 25 26 8 3 10 chr8 108328890 108328940 22335 Ranbp10 protein_coding 0.0468179179159598 3.34 1 0 0.974 36 20 20 13 3 8 chr9 31061432 31061482 17133 ENSMUST00000158944 snoRNA NA NA 1 0 0.582 11 40 20 8 8 13 chr10 127104046 127104096 -108 Tmem194 processed_transcript 0.0642099406856474 0.74 1 0 1 22 20 27 7 9 15 chr13 37629363 37629413 -102370 ENSMUST00000153078 lincRNA NA NA 1 0 0.151 16 30 18 14 5 17 chr14 51618078 51618128 -9501 Rnase10 protein_coding 0.208653928779770 13.15 3 0 0.033 29 26 21 11 4 9 chr15 59615956 59616006 135773 Trib1 protein_coding 0.211324259307217 14.75 0 0 1 32 22 20 14 3 9 chr16 11001966 11002016 -7000 ENSMUST00000153144 lincRNA NA NA 1 0 0.061 24 24 20 14 8 10 chr17 13407475 13407525 -6554 Smok2a protein_coding NA NA 0 0 0 15 7 14 17 19 28 chr3 116032548 116032598 -76201 Gpr88 protein_coding 0.669161146377715 16.24 1 0 0.056 15 38 19 12 1 14 chr4 16089123 16089173 1642 Ripk2 nonsense_mediated_decay 0.0428955978195016 6.98 0 0 0.322 18 26 25 13 4 13 chr4 133523225 133523275 -60 Hmgn2 processed_transcript 0.692643449847741 7.58 0 1 1 15 35 23 12 5 9 chr7 147903678 147903728 13639 Olfr541 protein_coding NA NA 0 0 0.159 29 31 14 12 5 8 chr8 88011902 88011952 -4548 Gpt2 protein_coding 0.00633775226850904 16.85 1 0 0.454 21 21 31 8 4 14 chr9 55125523 55125573 4880 Nrg4 protein_coding 0.00646464089799486 13.31 2 0 0.172 14 35 31 9 1 9 chr10 57162134 57162184 44000 ENSMUST00000150743 lincRNA NA NA 0 1 0 11 20 14 19 10 25 chr13 95020894 95020944 -4406 Scamp1 protein_coding 0.0378041274808653 8.31 2 0 0.546 18 42 21 5 1 12 chr14 62951137 62951187 257 Rnaseh2b protein_coding 0.0997529649526235 15.66 1 0 0.461 15 44 15 9 7 9 chr14 64562540 64562590 54 Sox7 protein_coding 0.395420077978024 10.26 0 1 0.721 14 35 28 13 1 8 chr17 56465189 56465239 -271 Kdm4b protein_coding 0.250937897259854 20.85 1 0 1 23 36 19 6 3 12 chr18 38367507 38367557 1884 Pcdh1 protein_coding 0.356659983367697 1.85 1 0 0.148 30 17 17 16 7 12 chr19 27293504 27293554 1455 Vldlr protein_coding 0.144390437574224 23.71 0 0 0.994 20 34 19 10 5 11 chr1 195211840 195211890 -15389 Camk1g protein_coding 0.272523906159476 15.07 1 0 0 17 13 32 15 9 12 chr2 7181972 7182022 -89727 ENSMUST00000104208 snRNA NA NA 1 1 1 22 45 14 11 2 4 chr2 25988492 25988542 -5549 ENSMUST00000155199 processed_transcript NA NA 1 0 0.997 20 31 20 13 5 9 chr2 91298828 91298878 1088 Lrp4 protein_coding 0.0241582766914605 11.7 0 1 1 20 27 27 9 7 8 chr3 108633553 108633603 9850 Stxbp3a protein_coding 0.407062185992441 9.39 1 0 0.084 10 37 23 14 3 11 chr6 121048656 121048706 -17054 protein_coding NA NA 1 0 0.103 17 41 22 11 2 5 chr8 47500282 47500332 -56088 Acsl1 protein_coding 0.133438251733651 15.74 0 1 0.374 16 44 22 5 4 7 chr9 21796736 21796786 -2883 Rgl3 protein_coding 0.593206576318212 21.15 1 0 0.358 33 22 23 7 1 12 chr9 24317783 24317833 446 Dpy19l1 protein_coding 0.0331555349517604 17.89 0 0 0.517 34 15 21 13 5 10 chr11 33062325 33062375 722 Npm1 protein_coding 0.277584877964105 11.49 0 0 1 32 30 10 8 7 11 chr11 86621113 86621163 -30 Dhx40 protein_coding 0.160993772270170 15.54 0 0 1 27 21 24 15 4 7 chr12 77634246 77634296 -298 Plekhg3 protein_coding 0.00337220355967580 9.23 1 0 0.918 13 41 29 12 1 2 chr13 113958273 113958323 12807 Gzmk protein_coding 0.250646483050182 3.43 1 0 0.088 34 23 17 9 5 10 chr14 33289906 33289956 -606 ENSMUST00000104705 miRNA NA NA 2 0 0.692 18 17 22 12 3 26 chr15 38498948 38498998 -49952 Azin1 protein_coding 0.569989661895459 11.91 1 1 0 18 35 24 14 0 7 chr15 96862557 96862607 23805 Slc38a4 protein_coding 0.0891367801056864 8.76 1 0 0.049 19 37 18 14 3 7 chr15 103088790 103088840 19 Nfe2 protein_coding 0.0522465253653783 1.44 0 0 1 17 30 25 18 3 5 chr17 47639355 47639405 -144 Taf8 protein_coding 0.131448223050747 1.98 2 0 0.295 25 28 19 10 2 14 chr19 55177752 55177802 -172 Gpam protein_coding 0.0447471208046381 1.86 0 0 0.823 21 20 23 14 1 19 chr2 131135165 131135215 10909 ENSMUST00000149576 processed_transcript 0.989115172677677 11.36 1 0 0.22 16 26 26 18 3 8 chr3 57539503 57539553 -514 Rnf13 protein_coding 0.56710679375786 15.09 0 0 0.622 10 26 28 17 2 14 chr3 105984461 105984511 -14004 Chi3l3 protein_coding 0.369026140028421 9.27 0 0 0.05 22 11 21 16 5 22 chr3 107916604 107916654 16468 Gnat2 processed_transcript 0.322200266608120 1.27 2 0 0.197 21 22 17 17 0 20 chr4 98735636 98735686 34808 ENSMUST00000119478 processed_pseudogene NA NA 3 0 0.115 24 32 15 7 5 14 chr4 98853735 98853785 -6865 Atg4c protein_coding 0.571229425584853 10.96 0 1 0.166 18 50 14 5 1 9 chr5 28118520 28118570 -666 Paxip1 protein_coding 0.0767624996840191 15.01 1 0 0.145 27 25 17 12 2 14 chr5 35384210 35384260 -3 Hgfac protein_coding 0.889309480871928 1.04 0 0 1 24 22 16 12 7 16 chr5 122141117 122141167 -20476 Atxn2 protein_coding 0.0140616678848853 4.25 1 0 0 27 20 29 10 3 8 chr7 17200879 17200929 -562 Grlf1 protein_coding 0.276993246410763 12.02 1 0 1 16 40 17 15 0 9 chr8 127909540 127909590 107045 Sipa1l2 protein_coding 0.498208711945418 6.38 1 0 0.016 19 26 20 11 5 16 chr9 15106069 15106119 4490 4931406C07Rik protein_coding 0.774964991142975 22.32 1 0 0.225 16 29 20 12 10 10 chr9 63837761 63837811 27008 Smad6 nonsense_mediated_decay 0.484169153923591 20.82 1 0 0.082 27 15 29 8 6 12 chr10 66560197 66560247 -567 Reep3 protein_coding 0.549569824387698 18.98 1 1 0.035 13 33 22 9 5 15 chr10 126792471 126792521 -3668 Inhbe protein_coding 0.352429632133933 15.12 3 0 1 22 15 28 10 3 19 chr11 121369925 121369975 8600 Tbcd processed_transcript 0.186704473719625 9.22 2 0 0.457 15 30 21 11 4 16 chr12 103707216 103707266 -161 Golga5 protein_coding 0.82512776204904 4.55 1 0 0.997 24 33 16 14 5 5 chr13 60675395 60675445 -27888 Dapk1 protein_coding 0.000156551760875714 23.99 1 0 1 24 31 13 9 3 17 chr13 68720714 68720764 259 Mtrr protein_coding 0.169513906334019 9.08 1 0 0.039 28 30 14 12 0 13 chr14 61275035 61275085 -50701 Spata13 protein_coding 0.0165271316313142 4.11 0 1 0.099 33 20 24 10 5 5 chr15 25859458 25859508 -11159 Fam134b protein_coding 0.0549603476706609 7.18 0 1 0.087 19 26 20 14 5 13 chr16 93325226 93325276 -44714 ENSMUST00000103258 miRNA NA NA 1 0 0.994 32 11 22 8 7 17 chr19 34592965 34593015 8922 Lipa protein_coding 0.0215292225333748 1.56 1 0 0.087 19 16 30 14 5 13 chr2 70485906 70485956 -13702 Gorasp2 protein_coding 0.250941959993785 9.33 2 0 0.217 37 18 11 9 4 17 chr2 162811975 162812025 -1066 Sgk2 protein_coding 0.00154429716678460 4.09 0 0 0.305 34 24 16 14 3 5 chr4 116668531 116668581 634 Hectd3 protein_coding 0.0516875598320477 5.73 1 1 1 25 22 22 13 3 11 chr4 133126278 133126328 -2475 ENSMUST00000120743 processed_pseudogene NA NA 1 0 0.667 23 27 27 9 1 9 chr4 146798696 146798746 -18859 ENSMUST00000120609 processed_pseudogene NA NA 0 0 0.092 22 20 11 15 14 14 chr7 119587004 119587054 15610 Parva nonsense_mediated_decay 0.115047901457281 20.49 0 0 0.52 23 26 19 13 6 9 chr8 47890141 47890191 65051 Irf2 protein_coding 0.049627261450492 10.29 0 0 0.014 25 37 18 9 1 6 chr8 95595839 95595889 8052 protein_coding 0.712824254538978 23.25 1 0 0.999 17 22 18 11 7 21 chr10 68751003 68751053 54449 Cdk1 retained_intron 0.367372177365400 5.73 1 0 1 31 24 17 16 0 8 chr10 95079577 95079627 13176 ENSMUST00000158993 misc_RNA NA NA 0 0 0.428 27 34 13 9 5 8 chr11 43742786 43742836 -28099 Adra1b protein_coding 0.00748224252744271 21.88 1 0 0.539 31 13 22 14 3 13 chr12 7883288 7883338 7138 ENSMUST00000095866 pseudogene NA NA 2 0 0 35 18 15 6 8 14 chr13 47265574 47265624 -23773 Rnf144b protein_coding 0.0260861032221665 22.91 1 0 0.346 11 38 21 10 8 8 chr13 99538427 99538477 -12510 Fcho2 protein_coding 0.418853897235909 11.67 0 0 1 34 20 18 9 5 10 chr14 28058270 28058320 7070 Arhgef3 protein_coding 0.660847527558044 7.59 0 0 0.016 16 15 28 15 11 11 chr15 36868667 36868717 -59121 Gm10384 protein_coding NA NA 0 1 0.116 17 26 27 14 6 6 chr16 21423221 21423271 4 Vps8 protein_coding 0.169255943590615 5.27 2 0 0.989 25 35 17 9 4 6 chr16 31509324 31509374 51147 Bdh1 processed_transcript 0.0013496994717115 8.2 0 1 1 18 39 14 16 3 6 chr19 5366228 5366278 378 Banf1 protein_coding 0.156582302852378 3.65 2 0 0.484 25 29 20 12 0 10 chr1 13302840 13302890 -13062 Ncoa2 protein_coding 0.61681016124267 10.85 0 0 0.023 10 33 25 14 5 8 chr2 11423727 11423777 -24 Pfkfb3 protein_coding 0.00891861800090059 10.64 0 0 0.985 17 29 26 10 3 10 chr2 34760912 34760962 -510 Phf19 processed_transcript 0.470461703595162 0.35 0 0 1 12 29 26 15 2 11 chr2 146269432 146269482 3572 Ralgapa2 protein_coding 0.00701946301389508 6.06 1 0 0.046 10 30 19 21 4 11 chr2 172978168 172978218 -356 Pck1 protein_coding 0.00401283552093104 11.23 0 0 0.303 33 14 25 13 1 9 chr3 57239434 57239484 10223 Tm4sf4 protein_coding 0.344039333328371 0.87 1 0 0.101 24 26 16 12 6 11 chr3 151977676 151977726 25653 Fam73a protein_coding 0.688096909463081 3.4 0 0 0 17 14 27 11 5 21 chr4 46966029 46966079 38691 Gabbr2 protein_coding NA NA 0 1 0.176 15 31 20 13 3 13 chr6 52534526 52534576 -27642 Hibadh retained_intron 0.161489942833654 21.31 1 0 1 24 17 29 10 6 9 chr6 140518924 140518974 39465 ENSMUST00000122528 misc_RNA NA NA 0 0 1 21 19 26 10 7 12 chr7 28954723 28954773 -17 Fbl protein_coding 0.241674332133030 10.66 1 0 0.999 19 25 27 8 1 15 chr7 108763722 108763772 -34072 Art2b protein_coding 0.182177243942374 3.52 0 0 0 27 17 14 21 5 11 chr8 12719389 12719439 -287 ENSMUST00000098932 protein_coding NA NA 0 0 0.109 27 25 27 9 1 6 chr8 108828435 108828485 21253 ENSMUST00000137706 processed_transcript NA NA 1 0 0.218 29 26 18 8 1 13 chr8 124698339 124698389 -95105 Gm22 protein_coding 0.765395887305253 16.75 0 1 0.332 22 26 21 8 5 13 chr10 93522979 93523029 -12283 Fgd6 processed_transcript 0.0736446879603665 5.73 1 0 1 22 23 21 8 8 13 chr10 117166640 117166690 16749 Slc35e3 protein_coding 0.0211847655686067 16.34 1 0 0.715 31 19 16 13 4 12 chr11 100694977 100695027 -11160 Stat5b protein_coding 0.00201499251424717 1.73 2 0 0.267 21 22 20 12 3 17 chr11 101561907 101561957 -32301 Dhx8 retained_intron 0.298603567235443 11.5 0 0 1 30 16 24 11 4 10 chr11 115311590 115311640 9756 4933422H20Rik protein_coding 0.00971777627425661 20.27 1 0 0.299 26 27 18 11 3 10 chr12 92828882 92828932 -885 Gtf2a1 protein_coding 0.432619663160279 15.3 1 0 0.962 17 33 25 8 8 4 chr12 102147892 102147942 -1509 Gpr68 protein_coding 0.990786955125275 23.34 1 0 0.04 22 29 17 11 4 12 chr12 106237520 106237570 -658 4831426I19Rik protein_coding 0.341656033250627 10.4 0 0 0.124 23 41 11 10 0 10 chr13 111245472 111245522 60241 Plk2 protein_coding 0.393041779592839 19.81 2 0 1 22 21 27 10 3 12 chr14 26326345 26326395 -45756 ENSMUST00000156682 processed_transcript NA NA 0 0 0.191 25 16 21 7 4 22 chr14 59328859 59328909 -59647 ENSMUST00000104013 snoRNA NA NA 1 0 1 12 27 29 11 5 11 chr14 121472385 121472435 -28891 Farp1 processed_transcript 0.116637886121223 6.45 1 0 0.015 13 34 20 11 6 11 chr18 12795706 12795756 -6122 Ttc39c protein_coding 0.00953621038083712 13.15 0 0 0.12 18 25 20 13 7 12 chr18 33374409 33374459 -918 Stard4 protein_coding 0.244214758274962 7.95 0 1 0.05 17 46 15 10 0 7 chr19 5024107 5024157 61 Slc29a2 protein_coding 0.364587675809491 19.64 0 0 0.07 31 21 19 9 3 12 chr19 40546534 40546584 41667 Sorbs1 protein_coding 0.000884232798722051 7.12 0 0 1 22 25 21 9 4 14 chr1 36527280 36527330 -1160 Cnnm4 protein_coding 0.363415132276444 22.38 0 1 0.859 15 33 23 11 3 9 chr1 166358097 166358147 30364 Atp1b1 protein_coding 0.220570646858856 11.21 1 0 0.483 19 16 25 7 11 16 chr2 169177098 169177148 -32657 ENSMUST00000103819 miRNA NA NA 2 0 0.446 21 43 14 8 4 4 chr3 58496064 58496114 196 Siah2 protein_coding 0.164516095418031 2.83 1 0 1 29 23 23 10 3 6 chr4 123594491 123594541 -4 ENSMUST00000153814 processed_transcript 0.881650193707966 22.97 1 0 1 26 32 14 12 1 9 chr4 125876958 125877008 1378 Thrap3 protein_coding 0.0374676976365414 6.48 0 1 0.21 22 25 25 8 1 13 chr5 128091294 128091344 -1598 Slc15a4 protein_coding 0.332754454215672 12.58 1 0 0.216 21 31 18 6 8 10 chr5 137583720 137583770 8332 Trim56 protein_coding 0.345091022230709 7.16 0 0 0.015 31 20 21 10 2 10 chr5 139835329 139835379 6774 protein_coding NA NA 1 0 0.297 23 35 16 8 4 8 chr6 121250722 121250772 -53 Slc6a13 protein_coding 0.302399894451803 1.82 1 0 0.151 32 13 23 10 4 12 chr6 142294309 142294359 136 Pyroxd1 retained_intron 0.95161713766017 13.56 0 0 1 21 37 9 11 6 10 chr6 146075590 146075640 20115 Itpr2 processed_transcript 0.0368303033076469 17.75 1 0 0.012 18 33 17 13 9 4 chr8 98377392 98377442 22 Slc38a7 protein_coding 0.419699078213404 4.89 2 0 0.91 26 31 9 9 6 13 chr9 62687160 62687210 586 Cln6 nonsense_mediated_decay 0.0502445905826713 8.67 1 0 0.097 31 18 15 9 13 8 chr11 55283154 55283204 -8 G3bp1 protein_coding 0.563239087088603 0.1 0 0 1 22 32 13 8 5 14 chr13 28611890 28611940 1062 ENSMUST00000134787 processed_transcript 0.69964062287171 22.46 1 0 0.286 31 25 8 6 7 17 chr14 55495773 55495823 -310 ENSMUST00000100563 protein_coding NA NA 0 1 1 35 14 20 8 3 14 chr15 38449150 38449200 -154 Azin1 protein_coding 0.569989661895459 11.91 0 0 0.887 18 28 21 15 3 9 chr17 23466368 23466418 -136174 Zfp40 protein_coding 0.0662662081147322 0.39 0 0 0 17 18 20 16 7 16 chr1 85259152 85259202 2772 protein_coding NA NA 0 0 0.171 16 24 14 13 7 19 chr2 75589105 75589155 -20901 ENSMUST00000123829 processed_transcript NA NA 0 1 0.162 16 30 15 13 7 12 chr3 152059370 152059420 -253 Zzz3 protein_coding 0.473326959242061 12.04 0 0 0.016 27 24 24 7 2 9 chr4 41471976 41472026 34 2310028H24Rik protein_coding 0.491760901072647 18.52 1 0 0.6 27 18 19 16 0 13 chr4 118101328 118101378 540 Elovl1 processed_transcript 0.0748515983559463 22.32 2 0 0.718 22 21 22 10 4 14 chr4 137499557 137499607 29985 Ece1 processed_transcript 0.120200386486589 5.52 1 0 0.276 9 38 20 18 2 6 chr4 138527372 138527422 -1406 Tmco4 protein_coding 0.584097711137258 6.27 0 0 0.261 23 21 21 10 7 11 chr4 146892589 146892639 2362 ENSMUST00000118377 processed_pseudogene NA NA 0 0 0 15 14 22 18 13 11 chr5 9040515 9040565 -40871 ENSMUST00000146928 processed_transcript NA NA 0 0 0.205 17 32 10 11 4 19 chr5 20931266 20931316 472 Fam185a retained_intron 0.540143618265498 15.1 1 0 0.981 19 37 15 8 6 8 chr5 99852841 99852891 -170993 Rasgef1b protein_coding 0.100978599839591 13.75 1 0 0.155 27 31 14 8 2 11 chr6 31040866 31040916 -2979 ENSMUST00000123757 processed_transcript NA NA 0 0 0.118 14 27 22 10 8 12 chr6 58558606 58558656 11966 Abcg2 protein_coding 0.137346157666578 12.17 0 0 0.816 14 17 15 16 9 22 chr6 90722388 90722438 -8278 Iqsec1 protein_coding 0.203030234926303 6.61 1 0 0.288 17 28 26 6 5 11 chr6 140623074 140623124 50280 Aebp2 protein_coding 0.0225152885604019 5.18 1 0 0.473 23 22 11 11 4 22 chr7 121454791 121454841 16021 ENSMUST00000102454 miRNA NA NA 0 0 0.997 18 28 19 12 2 14 chr8 26864990 26865040 -343 Ddhd2 protein_coding 0.000723431587505826 11.22 0 1 0.111 27 33 16 7 3 7 chr8 60130923 60130973 852 Galnt7 protein_coding 0.232333995674527 7.23 1 0 0.834 10 36 20 17 5 5 chr8 73340809 73340859 8486 Il12rb1 protein_coding 0.699807293221045 18.72 1 0 0.896 14 15 30 11 7 16 chr8 88012710 88012760 -3740 Gpt2 protein_coding 0.00633775226850904 16.85 0 0 0.084 16 27 33 8 1 8 chr10 66484328 66484378 -6814 ENSMUST00000099664 pseudogene NA NA 1 0 0.066 18 20 30 11 3 11 chr11 51077894 51077944 1231 Clk4 protein_coding 0.566652191749239 10.5 1 0 0.142 20 29 13 9 6 16 chr11 64402699 64402749 1418 ENSMUST00000116780 miRNA NA NA 0 0 0.055 29 24 18 9 2 11 chr11 78617166 78617216 -20698 ENSMUST00000158123 snRNA NA NA 0 0 0.994 21 24 29 7 2 10 chr12 107022606 107022656 -15101 Papola protein_coding 0.740234205832802 15.88 0 1 0.255 23 26 24 10 3 7 chr15 101848636 101848686 -9998 Krt18 protein_coding 0.0252186163459138 3.83 0 0 0.996 21 23 25 14 3 7 chr16 46010345 46010395 -39 Plcxd2 protein_coding 0.180908451162824 11.12 1 0 0.871 23 31 18 7 6 8 chr17 15664259 15664309 -19 Pdcd2 protein_coding 0.021817062876338 7.83 0 0 0.708 19 35 20 12 2 5 chr17 65093017 65093067 92369 4930583I09Rik protein_coding 0.985901313987743 15.07 1 0 0.401 27 21 20 8 2 15 chr1 5073142 5073192 -66 Atp6v1h protein_coding 0.620514730362003 17.5 2 0 0.67 19 28 23 11 3 8 chr3 87981982 87982032 -300 ENSMUST00000125478 lincRNA NA NA 0 0 0.54 23 20 19 16 6 8 chr4 137036697 137036747 12038 Hspg2 protein_coding 0.840749955382756 1.98 2 0 0.02 32 25 15 11 2 7 chr4 149172915 149172965 -5412 ENSMUST00000119178 processed_pseudogene NA NA 1 0 0.241 14 28 18 11 6 15 chr5 23289438 23289488 35 Pus7 protein_coding 0.337628153427567 14.41 1 0 1 34 17 20 12 1 8 chr5 97426362 97426412 -321 Bmp2k protein_coding 0.0196156971391195 11.94 0 1 1 17 39 18 10 1 7 chr5 148357424 148357474 42734 Pan3 protein_coding 0.343794429901403 9.48 0 1 1 13 25 24 17 5 8 chr6 119368876 119368926 -1400 Adipor2 protein_coding 0.60365495017516 21.4 0 0 0.209 19 30 20 12 6 5 chr9 110235779 110235829 4 Scap processed_transcript 0.000992471290731105 5.99 0 0 1 20 39 20 9 0 4 chr11 32764025 32764075 16890 ENSMUST00000121601 processed_pseudogene NA NA 3 0 0.378 17 8 16 10 11 30 chr11 51670230 51670280 372 Phf15 processed_transcript 0.54131603213872 19.65 2 0 1 18 41 16 8 6 3 chr11 72029100 72029150 -31 Med31 protein_coding 0.920476471787009 18.16 1 0 1 29 11 22 13 4 13 chr11 121099044 121099094 502 Narf protein_coding 0.0256695875983016 10.84 0 1 0.362 22 16 23 10 3 18 chr12 118800616 118800666 -12174 ENSMUST00000158857 rRNA NA NA 0 0 0 16 5 21 12 7 31 chr14 9164199 9164249 -13687 Fam107a protein_coding 0.15340339066839 11.25 1 0 1 22 37 17 9 0 7 chr14 30809477 30809527 12493 Il17rb nonsense_mediated_decay 0.175007880352441 3.82 0 0 0.268 24 30 20 11 2 5 chr16 4702865 4702915 16198 Nmral1 retained_intron 0.461081209450732 7.04 1 0 0.548 21 30 14 11 4 12 chr17 12985584 12985634 22112 ENSMUST00000158900 misc_RNA NA NA 0 0 0.031 23 24 18 12 3 12 chr18 33624012 33624062 220 Gm10549 protein_coding NA NA 0 0 0.216 20 31 19 13 3 6 chr1 59259420 59259470 34618 Als2 protein_coding 0.386637316297768 9.42 1 0 0.193 13 32 15 13 5 13 chr1 91412490 91412540 -47420 ENSMUST00000157746 rRNA NA NA 0 0 0.302 19 18 30 10 3 11 chr2 25988846 25988896 -5195 ENSMUST00000155199 processed_transcript NA NA 1 0 0.846 21 29 13 15 1 12 chr4 134024208 134024258 -2 Stmn1 protein_coding 0.233404323929500 6.13 1 0 1 16 37 14 12 7 5 chr5 8157626 8157676 -36556 Adam22 protein_coding 0.339844746636431 0.22 1 0 0.222 32 25 10 7 1 16 chr5 74590772 74590822 -524 Rasl11b protein_coding 0.304719747772934 23.48 0 0 0.165 11 31 24 11 8 6 chr5 93028253 93028303 -3847 Stbd1 protein_coding 0.0341664782322838 10.64 1 0 0.954 24 25 14 10 7 11 chr5 129526335 129526385 213 Ran protein_coding 0.0801904348228707 23.06 1 0 0.992 27 19 23 14 5 3 chr5 130531751 130531801 -17420 Tpst1 protein_coding 0.0110427951044791 16.22 0 0 0.168 20 8 26 18 8 11 chr6 114869189 114869239 2625 Vgll4 protein_coding 0.75766934065426 7.73 1 0 0.992 21 25 19 6 2 18 chr6 128544138 128544188 -12539 BC048546 protein_coding 0.301501609455488 19.71 2 0 0.13 16 25 20 11 3 16 chr7 16567161 16567211 -14270 Ehd2 protein_coding 0.516974920046578 13.31 0 1 0.131 31 14 28 6 4 8 chr7 120350533 120350583 -421 Arntl protein_coding 0.000503684433896654 21.89 0 0 0.061 16 36 12 17 1 9 chr8 96702952 96703002 -164 Mt1 protein_coding 0.709658329559069 7.84 0 0 0.072 18 16 29 13 8 7 chr11 29072048 29072098 -817 Smek2 protein_coding 0.193298405605335 10.75 0 1 0.952 12 23 25 14 4 13 chr12 17551434 17551484 -319 Odc1 protein_coding 0.0989846915680073 16.68 2 0 0.857 13 31 33 5 1 8 chr12 76574235 76574285 -56492 Gphb5 protein_coding NA NA 1 0 0.089 19 27 20 10 1 14 chr15 81311446 81311496 14668 Rbx1 protein_coding 0.214040956614742 8.61 0 0 0.788 17 30 23 13 4 4 chr16 32868495 32868545 -83 1700021K19Rik protein_coding 0.017055525512291 23.61 1 0 0.79 23 25 22 8 9 4 chr18 39461288 39461338 1031 ENSMUST00000128894 processed_transcript NA NA 1 0 0.927 14 21 31 12 1 12 chr18 83090425 83090475 -510 ENSMUST00000142567 lincRNA 0.0757554028341016 15.19 0 1 0.635 27 19 20 13 6 6 chr2 4843681 4843731 3580 Phyh processed_transcript 0.106620432066168 13.9 1 0 0.041 17 32 17 10 2 12 chr4 95246074 95246124 -13 Fggy protein_coding 0.568158055961278 20.22 0 1 0.995 20 21 18 20 1 10 chr4 106678948 106678998 16131 ENSMUST00000129617 processed_transcript NA NA 1 1 0.461 18 36 15 10 3 8 chr4 146900908 146900958 1350 ENSMUST00000117417 processed_pseudogene 0.266515126674743 6.86 0 0 0 13 11 16 24 8 18 chr4 149148441 149148491 -80 Slc25a33 protein_coding 0.267911336347908 10.26 0 1 0.996 21 30 19 9 1 10 chr5 145133191 145133241 -14235 Baiap2l1 protein_coding 0.35262622446827 17.53 1 0 0.998 24 21 17 10 0 18 chr6 124442938 124442988 -168 C1rl protein_coding NA NA 1 0 0.117 14 22 12 8 8 26 chr7 109054240 109054290 -194 2400001E08Rik protein_coding 0.055049525764624 1.16 3 0 0.88 25 18 22 15 4 6 chr10 62830913 62830963 13514 Sirt1 protein_coding 0.499905507850520 10.9 2 0 0 21 9 22 12 4 22 chr10 67011857 67011907 -361 Ado protein_coding 0.945449620035518 5.86 0 0 1 26 20 22 8 8 6 chr10 87035318 87035368 25925 Pah protein_coding 0.181888748594870 14.2 0 1 0.106 24 20 16 11 7 12 chr11 69652011 69652061 10 1810027O10Rik protein_coding 0.69047912203401 23.46 0 0 1 13 30 28 12 4 3 chr13 46012833 46012883 47487 Atxn1 protein_coding 0.156896362879107 16.31 0 0 0.45 25 25 18 5 1 16 chr14 31941597 31941647 494 2010107H07Rik protein_coding 0.00225903438088466 12.11 1 0 0.025 31 30 13 9 1 6 chr14 46038539 46038589 -13929 ENSMUST00000116812 miRNA NA NA 0 0 0.616 24 26 22 7 1 10 chr14 52549572 52549622 -7242 Rnase13 protein_coding NA NA 0 0 0.618 22 27 17 11 6 7 chr14 121507797 121507847 6521 Farp1 processed_transcript 0.116637886121223 6.45 1 0 1 32 29 11 8 3 7 chr17 13404575 13404625 6692 Gm10512 protein_coding 0.52128626101774 14.39 0 0 0.073 21 10 26 12 7 14 chr17 56616012 56616062 -131 Ptprs protein_coding 0.105880750220810 4.68 2 0 0.988 38 31 8 2 5 6 chr18 6304647 6304697 -27916 protein_coding 0.643111988752561 13.59 0 0 0.939 29 3 22 10 5 21 chr19 4570979 4571029 -23342 Pcx protein_coding 0.264822766825718 18.31 1 0 0.144 13 35 20 8 5 9 chr1 40281761 40281811 -139 Il1r1 protein_coding 0.0153206092548616 12.66 1 0 0.999 15 39 17 10 1 7 chr1 82255124 82255174 25462 Gm9747 protein_coding NA NA 1 0 0.999 19 35 8 9 6 12 chr2 30093090 30093140 -120 Lrrc8a protein_coding 0.5414726993393 14.52 1 0 1 19 12 24 15 7 12 chr4 146710856 146710906 11998 Gm13235 protein_coding NA NA 0 0 0 16 20 16 17 7 13 chr5 33016060 33016110 -50915 ENSMUST00000119864 unprocessed_pseudogene NA NA 2 0 0 22 18 25 12 6 6 chr7 6336076 6336126 38 Zfp28 protein_coding 0.190175314162179 1.05 0 0 0.045 10 29 25 9 3 13 chr7 75425629 75425679 -4174 ENSMUST00000124813 processed_transcript NA NA 1 0 0.079 28 16 14 11 4 16 chr8 47085205 47085255 -9 Ankrd37 protein_coding 0.427341277260755 10.09 0 0 0.981 15 25 20 11 9 9 chr9 56772587 56772637 3566 Snx33 protein_coding 0.250640086348429 22.44 1 0 1 11 11 32 12 8 15 chr9 107568846 107568896 859 Slc38a3 protein_coding 0.0664178050837555 9.3 1 0 0.993 29 12 14 10 6 18 chr9 109735236 109735286 -2 Nme6 protein_coding 0.185501217618376 13.43 1 0 0.997 14 36 21 11 1 6 chr10 5914131 5914181 3 Rmnd1 protein_coding 0.194825950062332 23.35 2 0 0.992 27 37 11 8 0 6 chr10 41530588 41530638 233 Sesn1 protein_coding 0.574105479159039 6.78 0 0 0.125 22 19 16 10 6 16 chr10 110653381 110653431 51548 Osbpl8 protein_coding 0.85725161224069 8.2 1 0 0.079 20 22 14 17 7 9 chr11 21417818 21417868 -6660 ENSMUST00000109573 protein_coding NA NA 2 0 0.426 23 28 12 9 6 11 chr11 68931527 68931577 -2354 Hes7 protein_coding 0.827725052650975 19.27 0 0 0.999 16 35 16 11 1 10 chr13 31307680 31307730 6260 ENSMUST00000153175 processed_transcript NA NA 0 0 0 13 9 37 13 3 14 chr15 82473521 82473571 -1091 protein_coding 0.281615173791130 13.74 1 1 0.031 27 20 21 7 3 11 chr19 29203869 29203919 -5875 ENSMUST00000083622 miRNA NA NA 1 0 0.056 35 21 13 4 2 14 chr19 42220931 42220981 -934 Marveld1 protein_coding 0.000585134127366979 15.42 0 0 0.831 9 27 30 11 7 5 chr1 157020239 157020289 14385 Stx6 protein_coding 0.0922554347117045 1.88 1 0 0.036 16 14 22 11 7 18 chr2 91299051 91299101 1311 Lrp4 protein_coding 0.0241582766914605 11.7 0 1 1 17 24 26 10 3 8 chr2 128769318 128769368 470 Zc3h8 protein_coding 0.062391517339402 12.28 0 1 0.126 28 30 13 11 3 3 chr3 3004503 3004553 -503502 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 17 12 14 11 6 28 chr4 105305711 105305761 54791 ENSMUST00000121621 processed_pseudogene 0.223884363023448 8.34 1 0 0.236 15 25 22 12 4 10 chr6 94729964 94730014 46928 ENSMUST00000157970 rRNA NA NA 1 0 0.993 19 23 16 10 8 12 chr7 5031751 5031801 -61 Epn1 protein_coding 0.322886376171607 6.86 1 0 0.96 20 18 28 7 7 8 chr7 30123615 30123665 24478 Dpf1 retained_intron 0.469279187072071 3.42 0 0 0.1 27 21 13 12 3 12 chr7 46522735 46522785 -2856 Gm16387 protein_coding NA NA 0 0 0 20 21 12 16 7 12 chr8 37520639 37520689 36 6430573F11Rik protein_coding 0.384069427856601 18.07 1 0 0.179 17 28 19 10 6 8 chr8 47412723 47412773 -32723 Helt protein_coding NA NA 0 0 0.006 19 15 20 13 6 15 chr9 83430520 83430570 -11412 Sh3bgrl2 protein_coding 0.220030615227599 9.21 0 1 0.219 18 22 23 8 5 12 chr9 113030987 113031037 -281581 ENSMUST00000157192 misc_RNA NA NA 0 1 0.86 26 26 17 6 1 12 chr10 80135118 80135168 -422 Mknk2 protein_coding 0.0497170251157431 11.54 0 1 0.189 16 32 22 7 2 9 chr10 80630576 80630626 67 Pias4 protein_coding 0.286972278280828 4.32 0 0 0.755 20 35 19 10 1 3 chr10 98376682 98376732 -1097 Atp2b1 protein_coding 0.727015029305086 14.55 0 0 0.79 13 25 27 10 1 12 chr10 127213199 127213249 -218 Rdh9 processed_transcript 0.0176698306389107 2.68 1 0 0.016 34 18 12 10 5 9 chr11 49016904 49016954 -58 Zfp62 retained_intron 0.245209954445033 20.69 1 0 0.998 16 39 9 13 0 11 chr11 53577519 53577569 -5972 Irf1 protein_coding 0.0183272850066130 2.66 0 0 1 15 36 15 9 2 11 chr11 70245682 70245732 -430 Arrb2 retained_intron 0.237154737290611 4.8 0 0 0.998 14 15 35 12 4 8 chr11 77707964 77708014 -391 Pipox protein_coding 0.0923470572784125 15.88 0 0 0.094 27 23 24 8 1 5 chr12 56639775 56639825 -26426 Aldoart2 protein_coding 0.906379875632038 4.06 0 0 0.066 13 12 23 16 3 21 chr12 82290768 82290818 143145 protein_coding 0.135356381560204 23.62 1 0 0.044 13 20 24 16 3 12 chr13 59508588 59508638 150067 Agtpbp1 protein_coding 0.329875328713428 17.47 1 0 0.492 22 23 17 13 6 7 chr14 77197572 77197622 238291 9030625A04Rik retained_intron 0.491122045093811 22.24 0 1 0.734 20 18 19 13 8 10 chr14 120938857 120938907 36059 Rap2a protein_coding 0.03026936708469 15.54 0 0 0.138 11 7 29 16 5 20 chr15 25845079 25845129 -25538 Fam134b protein_coding 0.0549603476706609 7.18 1 0 1 22 28 17 8 0 13 chr17 5654952 5655002 161663 ENSMUST00000089182 retrotransposed 0.947889972132988 2.97 0 0 0.406 17 11 18 10 7 25 chr17 86857670 86857720 -32207 Prkce retained_intron 0.0178667759801599 8.94 1 0 0.023 19 31 17 9 2 10 chr19 47520807 47520857 18059 Sh3pxd2a protein_coding 0.262088128476909 23.94 0 0 0.151 24 29 16 5 7 7 chr1 121190541 121190591 128259 Inhbb protein_coding 0.201206405086512 3.31 1 0 0.057 23 27 12 12 1 12 chr2 25414493 25414543 859 Edf1 processed_transcript 0.186171471961490 12.53 0 0 0.055 20 24 17 8 1 17 chr3 89124534 89124584 994 Efna3 processed_transcript 0.505742087607931 11.6 2 0 1 18 32 14 7 3 13 chr3 120966338 120966388 -105 Tmem56 protein_coding 0.086333152173042 10.23 1 0 0.998 23 31 11 4 1 17 chr4 102482855 102482905 4723 ENSMUST00000104758 miRNA NA NA 3 0 0.085 30 19 14 7 6 11 chr4 107572988 107573038 7038 0610037L13Rik protein_coding 0.500536619239932 17.38 1 0 0.657 17 16 24 11 4 15 chr4 146709633 146709683 10775 Gm13235 protein_coding NA NA 0 0 0.561 18 9 11 23 11 15 chr5 43444129 43444179 -181041 Cpeb2 protein_coding 0.48245884254282 4.64 1 0 0.987 27 25 16 10 2 7 chr5 64239075 64239125 35366 0610040J01Rik protein_coding 0.0162180667093055 10.63 1 0 0.3 18 33 17 5 3 11 chr6 81768807 81768857 12047 ENSMUST00000158820 snoRNA NA NA 0 0 0 12 13 30 11 2 19 chr6 125221692 125221742 -13522 ENSMUST00000158931 snoRNA NA NA 2 0 0.535 22 23 23 13 2 4 chr7 117265529 117265579 -16 Wee1 protein_coding 0.00320795798089123 11.47 1 0 1 26 27 18 8 1 7 chr7 120350771 120350821 -183 Arntl protein_coding 0.000503684433896654 21.89 0 0 1 10 44 11 14 2 6 chr7 126665471 126665521 1500 Pdilt protein_coding 0.498416987006589 18.54 1 0 0.083 32 16 15 7 0 17 chr8 24292569 24292619 26239 Agpat6 protein_coding 0.0591639991317116 14.74 0 0 0.379 19 22 18 13 3 12 chr10 80555844 80555894 -502 Creb3l3 protein_coding 0.079769533687817 11.29 0 1 0.947 17 17 27 13 5 8 chr11 20442421 20442471 -810 Sertad2 processed_transcript 8.31759802614514e-06 8.83 1 0 0.176 23 21 15 11 4 13 chr11 86196119 86196169 -25040 Med13 protein_coding 0.317709931480819 20.65 0 0 0.129 22 16 20 14 1 14 chr11 107125138 107125188 -66859 ENSMUST00000119399 processed_pseudogene NA NA 1 0 0.038 19 22 15 19 3 9 chr16 87455153 87455203 -46 Usp16 protein_coding 0.0317087451491338 10.9 1 0 1 20 26 17 9 6 9 chr18 64485618 64485668 -14359 Onecut2 protein_coding 0.0849318589810972 10.75 1 0 0.99 16 36 11 9 8 7 chr19 4588616 4588666 -5705 Pcx protein_coding 0.264822766825718 18.31 1 0 0.019 22 23 11 10 7 14 chr19 56623975 56624025 891 Nhlrc2 protein_coding 0.0697649612988018 11.99 1 1 1 16 20 20 12 5 14 chr1 36300978 36301028 118 Uggt1 protein_coding 0.07871579315788 19.16 1 0 0.996 17 23 23 11 7 5 chr1 92998410 92998460 -43245 Rbm44 protein_coding 0.112119351555420 20.32 0 0 0.04 21 7 28 14 11 5 chr2 119698477 119698527 513 ENSMUST00000069398 pseudogene 0.0781736789989888 1.65 2 0 1 21 17 24 14 3 7 chr4 8642452 8642502 4990 Chd7 protein_coding 0.02620653411043 14.72 0 0 0.01 15 29 24 5 7 6 chr4 103891428 103891478 -109404 Gm10304 protein_coding NA NA 1 0 0.476 19 14 22 13 6 12 chr4 145742295 145742345 6689 1700029I01Rik protein_coding 0.96525694818934 10.85 0 0 0 20 10 20 15 10 11 chr7 71330955 71331005 493 Trpm1 protein_coding 0.160702632394354 18.35 1 0 0.012 13 25 17 9 7 15 chr8 77736933 77736983 -879 Rasd2 protein_coding 0.710826334035848 0.27 0 0 0.118 13 35 15 9 4 10 chr8 116679432 116679482 21915 Nudt7 protein_coding 0.000685838570006761 12.98 0 0 0.868 27 29 7 9 3 11 chr8 122425467 122425517 -8768 Usp10 protein_coding 0.00580440237360566 10.93 0 0 0.434 18 27 18 11 4 8 chr9 66360308 66360358 2063 Fbxl22 protein_coding NA NA 1 0 0.02 26 11 18 13 3 15 chr9 66643421 66643471 -149 Aph1b protein_coding 0.0222933652512927 18.69 1 0 0.09 24 24 14 11 3 10 chr11 98812954 98813004 5221 ENSMUST00000082557 snRNA NA NA 1 0 1 6 34 24 11 4 7 chr13 34554669 34554719 -117643 Slc22a23 protein_coding 0.0455110312646543 9.78 1 0 0.032 30 12 11 13 5 15 chr13 81922854 81922904 627 Cetn3 protein_coding 0.289988719318212 13.59 0 0 0.022 18 32 16 10 0 10 chr15 38361553 38361603 65565 Azin1 retained_intron 0.569989661895459 11.91 0 0 0.996 23 8 26 14 5 10 chr15 81311666 81311716 14888 Rbx1 protein_coding 0.214040956614742 8.61 0 0 0.185 15 35 20 9 1 6 chr15 98558522 98558572 82 Fkbp11 protein_coding 0.00187633227418978 10.71 0 0 0.94 23 26 16 9 5 7 chr16 30045786 30045836 -19623 Hes1 protein_coding 0.244193504400723 23.55 1 0 1 16 32 15 8 6 9 chr17 12864381 12864431 4298 Slc22a1 protein_coding 0.0296514169315260 4.4 1 0 0.143 20 22 15 8 4 17 chr17 64967350 64967400 16386 Man2a1 protein_coding 0.134107760488904 15.58 1 0 0.048 22 30 11 7 4 12 chr19 4720180 4720230 -7500 protein_coding NA NA 1 0 0.14 19 24 16 9 5 13 chr1 60916924 60916974 -26895 Ctla4 processed_transcript 0.83529537197277 1.86 1 0 0.127 22 19 19 10 6 9 chr1 166356518 166356568 31943 Atp1b1 protein_coding 0.220570646858856 11.21 1 0 0.216 13 27 20 7 3 15 chr1 193268288 193268338 -47393 Ppp2r5a protein_coding 0.432153774860358 7.19 0 0 0.984 22 30 12 7 1 13 chr3 27665175 27665225 -55839 Fndc3b protein_coding 0.282999024965673 13.94 0 1 1 33 10 17 14 3 8 chr3 79371871 79371921 -178 Fnip2 protein_coding 0.0119166431974288 8.55 0 0 0.637 19 22 25 7 7 5 chr3 101757523 101757573 -29246 Slc22a15 protein_coding 0.123964598694945 20.67 1 0 0.209 21 22 17 8 10 7 chr3 105930181 105930231 4834 Chia retained_intron 0.811405258483244 20.13 0 0 0.342 12 21 16 17 9 10 chr4 106688607 106688657 6472 ENSMUST00000129617 processed_transcript NA NA 0 0 1 14 15 28 14 4 10 chr4 133115942 133115992 6676 Nr0b2 protein_coding 0.196214859400362 23.83 1 0 0.484 20 14 28 8 2 13 chr5 66505685 66505735 -16292 Rbm47 protein_coding 0.260233148022191 7.84 1 0 1 17 27 17 10 1 13 chr5 140279637 140279687 4272 Tmem184a retained_intron 0.087431784684047 4.79 1 0 0.371 21 30 14 4 5 11 chr5 150993397 150993447 -104541 Fry protein_coding 0.352259404416871 5.87 1 0 0.004 13 11 23 10 8 20 chr7 26682523 26682573 -91 Cyp2b10 protein_coding 0.106870887830514 20.54 0 0 0.142 13 17 29 12 8 6 chr7 105671209 105671259 15770 ENSMUST00000083869 snRNA NA NA 0 0 0.999 19 21 24 10 3 8 chr8 77736688 77736738 -1124 Rasd2 protein_coding 0.710826334035848 0.27 0 1 0.491 14 30 14 14 2 11 chr8 126869089 126869139 -12024 ENSMUST00000082730 snRNA NA NA 1 0 0.093 13 19 21 11 7 14 chr11 51814334 51814384 4 ENSMUST00000147412 processed_transcript NA NA 2 0 1 18 24 21 8 6 8 chr13 52249584 52249634 181026 ENSMUST00000154250 lincRNA NA NA 1 0 0.057 30 21 16 11 0 7 chr14 65278692 65278742 7349 Kif13b protein_coding 0.792292598432843 7.31 1 0 0.171 15 14 19 18 11 8 chr16 95950830 95950880 13394 Ets2 retained_intron 0.110657364083176 6.76 1 1 0.077 10 34 16 14 4 7 chr17 26443607 26443657 -19626 ENSMUST00000128900 unprocessed_pseudogene NA NA 2 0 0 12 3 22 12 8 28 chr19 4133338 4133388 5791 Tmem134 protein_coding 0.184352344871563 16.97 0 1 0.099 33 16 13 9 4 10 chr19 53856488 53856538 -61180 Rbm20 protein_coding 0.89880778272411 22.8 1 0 0.178 16 22 19 15 2 11 chr1 88848500 88848550 -42267 ENSMUST00000120149 processed_pseudogene 0.973928953800417 6.76 2 0 0.027 18 23 22 10 3 8 chr1 186429805 186429855 -11297 protein_coding 0.0640204694290687 4.17 1 0 0.03 22 24 25 10 0 3 chr4 146609514 146609564 5146 ENSMUST00000125785 processed_transcript NA NA 2 0 0 18 13 12 7 12 22 chr5 37115528 37115578 24331 Cno protein_coding 0.120101583753564 14.02 0 0 0.074 18 14 25 14 3 10 chr5 137625899 137625949 70 Muc3 protein_coding 0.158503581688776 23.86 0 0 0.011 12 15 22 11 6 18 chr8 27993218 27993268 59651 ENSMUST00000059126 retrotransposed NA NA 2 0 0.079 22 25 13 12 3 9 chr9 44940875 44940925 2789 Gm10684 protein_coding NA NA 1 0 0.157 17 26 26 10 1 4 chr9 46069417 46069467 -7274 Apoa5 protein_coding 0.0907902824247661 13.45 1 0 0.128 19 31 11 9 4 10 chr9 120903463 120903513 37503 Ctnnb1 retained_intron 0.691669470587981 21.88 0 1 0.743 18 17 31 10 2 6 chr10 123280881 123280931 411284 ENSMUST00000122512 snRNA NA NA 0 0 0.038 20 29 18 11 1 5 chr11 65620857 65620907 136 Zkscan6 protein_coding 0.721559575769128 19.76 2 0 0.083 15 22 24 11 2 10 chr11 93829582 93829632 -21 Nme1 protein_coding 0.949628710957852 5.96 1 0 0.948 14 25 20 13 5 7 chr12 40764663 40764713 2 ENSMUST00000135883 processed_transcript NA NA 1 0 1 19 24 21 8 4 8 chr13 60710163 60710213 6616 Dapk1 protein_coding 0.000156551760875714 23.99 0 0 0.057 17 27 14 18 5 3 chr15 85562441 85562491 -2947 Ppara processed_transcript 0.054866411202044 9.94 1 0 0.051 20 26 15 9 1 13 chr19 4462063 4462113 -9937 Syt12 processed_transcript 0.234594459560598 15.81 1 0 0.201 14 14 21 11 9 15 chr1 182867096 182867146 119 Lefty1 retained_intron 0.593816965954868 19.02 0 1 1 14 26 25 14 0 4 chr2 4918047 4918097 -1132 Mcm10 retained_intron 6.7979751523312e-06 10.77 1 0 0.169 21 30 15 7 1 9 chr2 166070903 166070953 -28480 ENSMUST00000152987 processed_transcript NA NA 0 0 0.207 14 11 31 8 7 12 chr4 135643465 135643515 -12603 ENSMUST00000121307 processed_pseudogene NA NA 0 0 0.366 30 19 15 9 3 7 chr5 64330002 64330052 -7876 Rell1 processed_transcript 0.0124378851798072 5.56 2 0 0.093 32 16 11 10 3 11 chr6 58560543 58560593 13903 Abcg2 protein_coding 0.137346157666578 12.17 0 0 0.071 20 10 14 14 11 14 chr6 88856852 88856902 842 Tpra1 processed_transcript 0.277176394296289 2.95 1 0 0.03 28 15 18 11 4 7 chr6 97219815 97219865 -17066 Lmod3 protein_coding 0.942555850305577 15.39 0 0 0.047 18 21 17 10 7 10 chr7 130113288 130113338 -765 Rbbp6 protein_coding 0.0118955185389945 16.99 0 1 1 21 32 13 10 0 7 chr8 73085972 73086022 22393 Ell protein_coding 0.912897452374313 10.08 1 0 0.75 14 16 26 12 4 11 chr8 111514530 111514580 -84567 ENSMUST00000131438 lincRNA NA NA 2 0 0.273 21 15 17 13 4 13 chr8 129985201 129985251 -24215 Gm9909 protein_coding NA NA 0 1 0.377 11 15 25 13 2 17 chr9 78354211 78354261 -17278 Eef1a1 protein_coding 0.863792292122698 15.06 1 0 0.794 20 12 19 10 6 16 chr9 111926259 111926309 94935 ENSMUST00000083507 miRNA NA NA 1 0 0.994 20 21 15 7 12 8 chr10 33859735 33859785 -11972 Fam26f protein_coding 0.258218164473285 5.25 1 0 1 19 25 16 9 6 8 chr11 79068329 79068379 -181 Wsb1 protein_coding 0.50707081950943 22.33 1 0 0.107 11 25 18 12 6 11 chr11 95398980 95399030 -23121 Nxph3 protein_coding 0.85175624738543 0.61 1 0 0 18 8 20 12 4 21 chr11 118312844 118312894 3440 ENSMUST00000142751 processed_transcript NA NA 1 0 0.314 13 23 24 7 5 11 chr13 38444055 38444105 6278 Bmp6 protein_coding 0.999078601202938 3.47 1 0 0.38 15 23 20 14 2 9 chr13 102632230 102632280 -94083 Pik3r1 protein_coding 0.0148001546822855 15.05 1 0 0.916 10 27 14 12 4 16 chr13 113450748 113450798 -211 Slc38a9 protein_coding 0.078490557900695 14.94 0 1 0.009 19 24 18 15 1 6 chr16 38279890 38279940 14995 Nr1i2 protein_coding 0.159036067008116 11.44 0 0 0 14 6 22 20 12 9 chr17 8476227 8476277 -375 Brp44l protein_coding 0.404854860088004 17.32 1 0 0.045 12 19 31 13 3 5 chr17 28102309 28102359 -73 ENSMUST00000145924 processed_transcript NA NA 0 0 0.367 14 25 13 10 7 14 chr17 80404364 80404414 -28465 ENSMUST00000157558 snRNA NA NA 1 0 1 16 25 24 12 2 4 chr18 12606755 12606805 36730 Lama3 protein_coding 0.0233520415880514 15.11 0 0 1 10 29 12 8 7 17 chr19 36878126 36878176 -30877 Tnks2 protein_coding 0.930203669602953 21.11 0 0 0.14 22 15 22 7 3 14 chrX 71618630 71618680 -11 Slc10a3 protein_coding 0.503276696581399 10.21 1 0 0.056 15 31 16 10 4 7 chr1 133516301 133516351 13146 ENSMUST00000053161 retrotransposed NA NA 0 1 0.139 9 22 25 10 3 13 chr1 173286860 173286910 364 Pfdn2 processed_transcript 0.113478024260378 11.12 0 0 1 12 15 14 12 8 21 chr2 102041921 102041971 8590 ENSMUST00000118901 processed_pseudogene NA NA 1 0 0.121 15 13 26 17 6 5 chr2 180137412 180137462 4353 ENSMUST00000083526 miRNA NA NA 1 0 0.086 11 4 18 15 7 27 chr3 3005650 3005700 -502355 Hnf4g protein_coding 0.212121479425123 5.57 1 0 0 16 11 16 19 4 16 chr3 121426603 121426653 101 F3 protein_coding 0.245346704272794 8.08 0 1 0.028 17 32 15 12 2 4 chr3 133203026 133203076 4281 Tet2 protein_coding 0.715362738540406 15.06 2 0 0.382 24 20 12 10 3 13 chr4 53350783 53350833 29710 ENSMUST00000119750 processed_pseudogene NA NA 0 1 1 17 27 19 10 3 6 chr4 100965806 100965856 9005 ENSMUST00000153228 processed_transcript NA NA 1 0 0.995 12 24 18 10 10 8 chr4 154597266 154597316 -590 Ski protein_coding 0.00555764248628757 18.85 1 0 0.994 19 26 20 8 2 7 chr7 107685670 107685720 -51 Chchd8 protein_coding 0.455660805807408 16.58 0 0 0.995 19 23 20 11 3 6 chr7 147302447 147302497 -97 Echs1 protein_coding 0.652989891087653 7.74 0 0 0.143 12 32 20 6 6 6 chr7 148518020 148518070 -1168 Tmem80 protein_coding 0.387778453640786 3.28 1 0 0.033 27 23 12 10 4 6 chr8 13648988 13649038 28438 Rasa3 nonsense_mediated_decay 0.298126274809318 4.95 2 0 0.129 20 28 18 10 2 4 chr8 36151859 36151909 -123140 Tnks protein_coding 0.516371307695379 14.96 1 0 0.074 12 20 23 10 8 9 chr8 48619350 48619400 352 Rwdd4a protein_coding 0.312662808017041 13.82 0 0 0.246 13 27 20 12 3 7 chr8 129400378 129400428 26252 A630001O12Rik protein_coding NA NA 0 0 0.068 18 18 16 6 10 14 chr11 78233996 78234046 1698 Slc13a2 protein_coding 0.302471062049368 22.04 0 0 0.397 25 11 13 16 5 12 chr12 80393973 80394023 3271 Zfyve26 protein_coding 0.0181621222697158 4.55 1 0 0.388 13 29 11 15 6 8 chr14 75050036 75050086 9414 Htr2a protein_coding NA NA 0 1 0.128 8 32 23 5 4 10 chr15 91106547 91106597 76647 protein_coding NA NA 1 0 1 20 24 14 8 4 12 chr16 94748097 94748147 -74 Dscr3 retained_intron 0.546463521606197 3.47 2 0 0.947 19 34 14 6 5 4 chr17 26457249 26457299 -33268 ENSMUST00000128900 unprocessed_pseudogene NA NA 1 0 0.287 14 11 17 14 8 18 chr19 57451937 57451987 16428 Fam160b1 protein_coding 0.00186857815528548 10.62 0 0 0.572 20 26 16 9 1 10 chr1 9897284 9897334 -1410 6030422M02Rik protein_coding NA NA 0 0 0.079 15 32 12 13 1 8 chr1 84982808 84982858 22589 ENSMUST00000097671 pseudogene 0.0647561512751811 20.59 0 0 0.575 14 11 19 10 10 17 chr4 118100888 118100938 100 Elovl1 processed_transcript 0.0748515983559463 22.32 0 0 1 15 34 16 4 4 8 chr6 54550868 54550918 -2248 Plekha8 protein_coding 0.0914984271187753 13.12 1 0 0.257 21 18 20 12 1 9 chr6 113825729 113825779 15610 Atp2b2 retained_intron 0.131933550089738 21.5 1 0 0.086 10 27 22 13 1 8 chr8 93393832 93393882 38457 Gm6658 protein_coding NA NA 0 0 0.309 12 31 20 7 1 10 chr9 45957490 45957540 -5947 Sik3 processed_transcript 0.297837801073774 23.14 1 0 0.17 14 28 13 9 3 14 chr10 44194317 44194367 -15788 Prdm1 protein_coding 0.271434544908732 5.74 0 0 1 18 37 10 9 1 6 chr10 67731629 67731679 9820 Arid5b protein_coding 0.102770190731154 12.26 1 0 0.8 13 21 19 12 5 11 chr10 106477505 106477555 83175 Acss3 processed_transcript NA NA 0 1 0.127 23 20 21 10 1 6 chr11 50744839 50744889 271 Zfp354b protein_coding 0.386239440470442 9.79 0 1 0.194 17 20 18 13 3 10 chr11 63677428 63677478 -17133 ENSMUST00000118415 processed_pseudogene 0.438458765051484 10.82 1 0 0.785 18 32 11 10 5 5 chr11 83555512 83555562 -4905 1100001G20Rik protein_coding 0.501893699508378 19.79 0 0 0.801 16 18 21 12 4 10 chr12 82010885 82010935 -1554 ENSMUST00000083181 snRNA NA NA 1 0 0.217 25 21 16 10 1 8 chr12 85631868 85631918 5530 Ptgr2 nonsense_mediated_decay 0.499726542844939 8.22 1 0 0.136 12 23 24 10 2 10 chr14 51550238 51550288 263 Tmem55b protein_coding 0.0130200427219371 5.81 0 0 1 20 27 14 10 4 6 chr17 86902648 86902698 1899 Gm10309 protein_coding 0.509180952852948 17.76 1 0 0.884 17 27 16 9 4 8 chr17 87381225 87381275 18618 Rhoq protein_coding 0.880668223326937 7.65 3 0 0.073 9 7 27 9 8 21 chr1 142080084 142080134 -121 Cfh protein_coding 0.368783662384962 11.93 0 0 0.284 20 18 17 8 3 14 chr1 158647986 158648036 -898 Fam20b retained_intron 0.30793646686829 13.13 0 0 0.194 9 30 19 13 3 6 chr2 146381283 146381333 -11947 ENSMUST00000157276 snoRNA NA NA 2 0 0.007 24 17 18 9 2 10 chr2 170542571 170542621 -14711 Dok5 protein_coding 0.460127789920409 14.56 0 0 0 13 4 18 17 5 23 chr3 97447012 97447062 14231 Fmo5 processed_transcript 0.00057114823066514 16.76 2 0 0.099 12 39 17 7 0 5 chr4 130193847 130193897 -25364 Pum1 protein_coding 0.0770889825538971 5.74 1 0 0 36 15 18 5 0 6 chr5 125873420 125873470 -2873 Ubc protein_coding 0.0835137806335674 23.13 1 0 1 12 24 17 15 6 6 chr6 94668711 94668761 -18584 Lrig1 protein_coding 0.398755605455967 11.04 0 1 1 21 22 15 6 5 11 chr6 121255755 121255805 4980 Slc6a13 protein_coding 0.302399894451803 1.82 1 0 0.023 14 18 14 16 3 15 chr7 109213921 109213971 37 Rnf121 protein_coding 0.210528346311602 22.76 0 0 1 18 19 19 12 4 8 chr7 141689091 141689141 -120605 D7Ertd443e protein_coding 0.200782339500276 13.61 1 0 0.028 25 26 14 6 4 5 chr8 36469367 36469417 29658 Ppp1r3b protein_coding 0.000829620386153962 17.92 1 0 0.928 21 27 12 9 2 9 chr8 124431776 124431826 68 ENSMUST00000098348 protein_coding NA NA 0 0 0.074 23 27 7 9 2 12 chr8 129259483 129259533 -114643 A630001O12Rik protein_coding NA NA 1 0 0.004 20 17 19 9 2 13 chr9 64205700 64205750 -16630 Dis3l protein_coding 0.995303808549256 9.95 1 0 0.044 11 13 29 10 3 14 chr9 68731549 68731599 228464 Rora processed_transcript 0.0818439981515191 18.25 1 0 0.424 11 24 12 11 0 22 chr10 66510928 66510978 19786 ENSMUST00000099664 pseudogene NA NA 1 0 0.1 19 23 19 10 3 6 chr10 95236298 95236348 -7453 ENSMUST00000099327 pseudogene NA NA 1 0 0.818 11 14 28 15 2 10 chr11 53608478 53608528 874 processed_transcript NA NA 1 0 1 19 25 15 7 7 7 chr11 118338148 118338198 30 Engase protein_coding 0.79121580263893 23.49 0 0 0.112 11 25 29 12 1 2 chr12 73098519 73098569 73434 Gpr135 protein_coding NA NA 1 0 0.318 12 18 29 13 0 8 chr16 92610033 92610083 -3001 ENSMUST00000148919 lincRNA NA NA 0 0 1 15 15 17 17 8 8 chr17 95055836 95055886 93498 Mettl4 protein_coding 0.628075087824886 8.67 0 0 0.073 14 18 19 10 9 10 chr18 31791775 31791825 -2225 Sap130 protein_coding 0.0939552391953359 2.88 1 0 0.391 12 6 22 19 2 19 chr18 35721702 35721752 -173 Matr3 protein_coding 0.340398881277125 12.6 1 0 0.708 21 23 16 12 2 6 chr19 6036262 6036312 -10289 Syvn1 protein_coding 0.0190151385670805 16.87 0 0 0.097 19 19 13 10 6 13 chr19 14799165 14799215 -6220 ENSMUST00000122726 snRNA NA NA 0 1 1 13 22 22 9 6 8 chr1 121563625 121563675 -18137 Epb4.1l5 protein_coding 0.419973578826671 3.75 1 0 0.277 25 24 18 5 0 7 chr2 94113440 94113490 -8550 ENSMUST00000099688 protein_coding 0.533781594402646 13.18 1 0 0.987 18 20 23 13 0 5 chr2 104583059 104583109 -49 Depdc7 protein_coding 0.874968804677370 7.1 1 0 0.031 15 40 9 9 0 6 chr4 82157184 82157234 3289 ENSMUST00000139835 processed_transcript 0.688153821664817 22.47 1 0 1 23 21 14 8 3 10 chr4 128736679 128736729 646 Rnf19b protein_coding 0.00166016234213867 9.12 0 0 0.096 15 15 22 8 7 12 chr9 21172939 21172989 501 Ilf3 protein_coding 0.103750515302425 5.38 0 0 0.982 13 32 15 9 2 8 chr11 94087549 94087599 10133 protein_coding 0.59606354041758 15.39 1 0 0.113 16 16 22 15 5 5 chr11 109954901 109954951 -1992 Abca8a protein_coding 0.107165179559247 8.56 1 0 0.045 10 32 11 15 5 6 chr13 51941927 51941977 -95 Gadd45g protein_coding 0.93282064724378 14 0 0 1 18 26 14 11 1 9 chr18 21095073 21095123 -8028 Rnf125 protein_coding 3.51944997028894e-06 0.2 1 0 0.996 16 22 18 13 4 6 chrX 32097306 32097356 34329 protein_coding 0.233357058095180 20.11 0 0 0 16 7 18 17 5 16 chr1 59167490 59167540 9135 Als2cr4 protein_coding 0.203205706509138 5.38 0 1 0.988 20 25 8 13 5 7 chr1 74091181 74091231 -46164 Tns1 protein_coding NA NA 0 0 0.27 14 14 23 12 4 11 chr2 167927475 167927525 20765 Pard6b protein_coding 0.560215359358975 15.17 2 0 0.705 25 24 10 5 3 11 chr3 15331713 15331763 564 Gm9733 protein_coding NA NA 0 0 0.131 16 5 18 10 8 21 chr3 116653584 116653634 -17576 protein_coding 0.476547363751331 19.77 1 0 0.033 15 13 21 15 4 10 chr4 147965519 147965569 -68 Srm protein_coding 0.00158232469589402 14.22 0 0 0.566 23 32 9 5 2 7 chr4 154575981 154576031 -13601 Ski processed_transcript 0.00555764248628757 18.85 1 0 0.026 20 15 24 11 2 6 chr5 113416535 113416585 27974 Adrbk2 protein_coding 0.142193346628281 7.26 0 0 0.4 15 11 13 14 10 15 chr5 125729684 125729734 34820 Scarb1 processed_transcript 0.692758770454064 5.19 1 0 0.332 21 12 21 14 3 7 chr6 72576776 72576826 -2481 Gm15401 protein_coding NA NA 0 0 1 19 13 21 8 5 12 chr6 83082339 83082389 -3093 Rtkn protein_coding 0.200933292697608 17.59 0 0 0.083 19 16 19 12 5 7 chr7 74518288 74518338 -569 Mef2a nonsense_mediated_decay 0.233412198315854 11.78 0 0 0.027 21 22 17 6 5 7 chr10 12308100 12308150 26307 Utrn protein_coding 0.107769695459044 12.58 2 0 0.042 16 17 20 7 6 12 chr10 38891691 38891741 -8116 protein_coding NA NA 1 0 0.959 22 18 20 11 3 4 chr10 66558999 66559049 147 Jmjd1c protein_coding NA NA 0 0 1 19 27 13 7 0 12 chr11 69889492 69889542 -16629 Asgr2 protein_coding 0.85574168913082 16.16 1 0 0 11 22 19 7 7 12 chr11 98622127 98622177 7252 Thra protein_coding 0.00518819440691132 3.23 1 0 1 14 16 27 11 4 6 chr13 38086160 38086210 -153 Ssr1 protein_coding 0.127769035990497 20.67 1 0 0.953 14 24 21 11 3 5 chr13 41979393 41979443 -17602 ENSMUST00000158410 snRNA NA NA 2 0 0.015 23 13 13 12 2 15 chr13 53075623 53075673 794 Nfil3 protein_coding 0.00040445455252189 22 0 0 1 16 11 22 14 1 14 chr15 96287245 96287295 4004 Sfrs2ip protein_coding 0.173718398509348 0.07 1 0 0.035 17 21 18 10 4 8 chr15 96835120 96835170 51242 Slc38a4 protein_coding 0.0891367801056864 8.76 1 0 0.03 16 32 18 7 3 2 chr16 30064148 30064198 -1261 Hes1 protein_coding 0.244193504400723 23.55 0 0 1 18 31 9 11 3 6 chr16 72131974 72132024 467966 ENSMUST00000083990 snoRNA NA NA 0 0 0.145 17 13 21 5 5 17 chr18 13023156 13023206 -1292 Osbpl1a protein_coding 0.0800438877303538 8.35 0 0 0.574 19 26 14 7 2 10 chr18 74938688 74938738 -153 Acaa2 protein_coding 0.0874296529603393 8.12 1 0 0.016 11 21 26 7 7 6 chr19 36883127 36883177 -25876 Tnks2 protein_coding 0.930203669602953 21.11 0 0 0.999 16 30 12 8 2 10 chr1 40241611 40241661 -40289 Il1r1 protein_coding 0.0153206092548616 12.66 0 0 0.133 12 7 13 15 6 24 chr3 3006595 3006645 -501410 Hnf4g protein_coding 0.212121479425123 5.57 0 0 0 15 13 15 12 9 13 chr4 132563776 132563826 -3374 Ahdc1 processed_transcript 0.0632583659729136 18.55 0 0 0.235 15 13 19 11 1 18 chr5 108538753 108538803 17654 Mtf2 nonsense_mediated_decay 0.0506793145016043 0.64 0 0 0.035 18 26 10 12 5 6 chr5 119021757 119021807 11030 Med13l protein_coding NA NA 1 0 0 15 29 15 4 6 8 chr5 134660381 134660431 509 Gtf2ird2 protein_coding 0.0853346220474582 12.62 1 0 0.443 19 27 16 11 2 2 chr6 71187253 71187303 24946 Smyd1 processed_transcript 0.00144779576889649 8.62 0 0 0.062 12 22 20 8 8 7 chr6 135112468 135112518 5740 Hebp1 protein_coding 0.194859969647909 5.53 1 0 0.11 23 14 11 12 4 13 chr9 23257928 23257978 229938 Bmper protein_coding 0.869869466023023 9.78 2 0 0.17 24 8 19 9 4 13 chr10 74891918 74891968 1017 Upb1 retained_intron 0.183042508120450 15.07 1 0 1 11 23 18 7 11 7 chr10 89015991 89016041 -19686 Nr1h4 protein_coding 0.349284723889203 13.01 1 0 0.298 23 19 17 7 5 6 chr11 90234077 90234127 3029 protein_coding NA NA 0 0 0.039 9 35 12 9 1 11 chr13 12627035 12627085 -14345 Edaradd protein_coding 0.134823661033239 0.45 0 1 0.164 16 23 13 13 5 7 chr13 34557836 34557886 -120810 Slc22a23 protein_coding 0.0455110312646543 9.78 1 0 0.128 12 15 22 9 6 13 chr14 79250683 79250733 1705 1300010F03Rik protein_coding 0.049437587968924 11.12 1 0 0.081 19 13 23 8 5 9 chr15 3195238 3195288 -25714 Sepp1 protein_coding 0.0723740276603482 10.99 1 0 0 20 18 20 9 3 7 chr15 88581823 88581873 -293 Zbed4 protein_coding 0.161526529692436 23.19 2 0 0.94 13 26 18 7 0 13 chr15 98558021 98558071 583 Fkbp11 protein_coding 0.00187633227418978 10.71 1 0 1 17 26 14 8 3 9 chr17 33821726 33821776 579 Hnrnpm retained_intron 0.522979710126321 15.76 1 0 0.634 22 17 13 11 4 10 chr17 45745466 45745516 -6475 Gm7325 protein_coding 0.831127021387704 13.96 0 1 0 14 14 26 11 2 10 chr1 4759120 4759170 16628 Mrpl15 retained_intron 0.00297813708984659 0.2 0 0 0.47 20 16 12 8 9 11 chr1 74115506 74115556 -56584 Rufy4 protein_coding NA NA 1 0 0.561 14 20 18 12 3 9 chr1 134036352 134036402 -109 Cdk18 protein_coding 0.0724341880557167 12.82 0 0 1 15 29 9 11 3 9 chr1 153191551 153191601 -52 Ivns1abp protein_coding 0.0160123539165476 14.99 0 0 1 21 23 14 10 3 5 chr2 167042591 167042641 -8700 Ptgis retained_intron 0.13856962194713 10.03 0 0 0 13 7 27 10 5 14 chr4 59342906 59342956 2963 Susd1 retained_intron 0.0343171371318024 8.68 1 0 0.588 21 18 7 11 7 12 chr5 92925148 92925198 9369 Scarb2 protein_coding 0.116947688597196 13.15 1 0 0.418 22 16 15 12 5 6 chr5 124304539 124304589 10883 Niacr1 protein_coding 0.953729908641402 14.18 1 0 0.045 13 29 17 9 4 4 chr6 99095324 99095374 -3012 protein_coding NA NA 2 0 0.145 34 10 11 5 8 8 chr7 105151297 105151347 62390 Myo7a retained_intron 0.396530284666088 18.4 3 0 0.131 21 20 16 5 4 10 chr9 70981155 70981205 29260 Aqp9 protein_coding 0.0175940302728296 8.33 0 0 0.121 19 13 16 11 2 15 chr9 104134520 104134570 30719 Dnajc13 protein_coding 0.866192140272844 3.49 1 0 0.263 27 13 15 7 5 9 chr9 114842839 114842889 133 Gpd1l protein_coding 0.0280307887558671 10.2 0 0 1 11 28 12 10 3 12 chr11 59622684 59622734 381 Flcn protein_coding 0.00465471880844497 7.52 1 0 0.263 13 23 21 4 6 9 chr11 101148803 101148853 1459 Cntd1 processed_transcript 0.137285379689481 14.29 0 0 1 18 23 14 7 4 10 chr11 106054849 106054899 2 Strada protein_coding 0.186851374830706 6.88 1 0 1 13 29 12 12 0 10 chr12 106492298 106492348 -31397 Tcl1 protein_coding 0.237145278873573 22.14 0 0 0 9 15 19 11 7 15 chr13 110394442 110394492 -28509 Pde4d protein_coding 0.149094919968117 6.33 1 1 1 12 6 30 11 5 12 chr14 46603472 46603522 -43606 ENSMUST00000117504 processed_pseudogene NA NA 1 0 0.773 17 28 16 9 0 6 chr1 196187666 196187716 -258332 Plxna2 protein_coding 0.00108937829981310 23.57 2 0 0.048 27 28 12 4 2 2 chr2 31318965 31319015 -6737 Ass1 protein_coding 0.527597532285898 2.08 1 0 0.239 12 34 17 4 2 6 chr2 163401164 163401214 25253 Hnf4a protein_coding 0.00704237727788629 13.89 1 0 0.03 24 9 16 9 2 15 chr4 135769690 135769740 7435 Asap3 protein_coding 0.0381787077830894 21.32 0 0 0.092 12 22 24 8 1 8 chr4 152254553 152254603 133115 ENSMUST00000116710 miRNA NA NA 2 0 0.143 15 3 21 11 5 20 chr5 79849414 79849464 218695 ENSMUST00000157797 misc_RNA NA NA 0 0 0.011 13 19 9 14 3 17 chr5 137608969 137609019 -16915 Trim56 protein_coding 0.345091022230709 7.16 0 0 0 10 10 22 13 4 16 chr5 139424289 139424339 45921 Pdgfa processed_transcript 0.573403343446393 14.19 0 0 0.044 17 25 20 4 3 6 chr6 95663525 95663575 5244 Suclg2 protein_coding 0.375426198876115 6.02 1 0 0.962 19 12 15 11 6 12 chr7 139856653 139856703 -5111 ENSMUST00000132849 processed_transcript NA NA 1 0 0 23 14 13 13 9 3 chr8 49951008 49951058 -21765 Odz3 protein_coding 0.0758028264086776 5.76 1 0 0.14 12 23 19 7 6 8 chr10 124927576 124927626 -161582 Slc16a7 protein_coding 0.8338044117948 10.83 1 0 1 19 16 14 9 10 7 chr12 33505905 33505955 590 Nampt protein_coding 0.0204632777896449 13.79 1 0 0.076 15 24 12 8 7 9 chr12 104895573 104895623 -176 Serpina6 protein_coding 0.088428806275963 8.62 1 0 0.12 9 19 19 10 9 9 chr13 23930509 23930559 -784 Slc17a3 protein_coding 0.000770097744141263 19.94 1 0 0.289 22 19 14 7 2 11 chr15 82473251 82473301 -821 protein_coding 0.281615173791130 13.74 1 0 0.051 24 21 11 9 0 10 chr16 4404533 4404583 14987 Adcy9 protein_coding 0.276492460602599 5.48 2 0 0.063 23 21 5 11 6 9 chr1 192258881 192258931 -264347 Prox1 protein_coding 0.201257955327022 17.71 1 0 0.025 11 11 12 11 5 24 chr3 87710704 87710754 263 Hdgf protein_coding 0.156147882472918 10.87 0 0 0.996 8 23 22 15 2 4 chr4 15851258 15851308 -12502 ENSMUST00000157430 snoRNA NA NA 1 0 0.44 14 26 13 9 1 11 chr4 57784765 57784815 -8017 ENSMUST00000098063 protein_coding NA NA 2 0 0.159 9 17 10 19 8 11 chr4 102228404 102228454 -14271 Pde4b protein_coding 0.0133170929448471 3.7 1 0 0.044 21 15 12 10 10 6 chr4 121725893 121725943 -30250 ENSMUST00000117367 pseudogene 0.494957455517792 6.62 0 0 0.015 8 13 15 10 13 15 chr6 17413810 17413860 8 Met protein_coding 0.181640675362488 7.84 0 0 0.996 11 37 10 11 1 4 chr6 90385226 90385276 -6460 Ccdc37 processed_transcript NA NA 0 1 0.157 15 15 19 12 4 9 chr7 38870723 38870773 13640 Ccne1 processed_transcript 0.161978741533970 11.47 0 0 0.118 15 20 20 5 4 10 chr8 96704032 96704082 916 Mt1 protein_coding 0.709658329559069 7.84 1 0 1 21 16 10 8 8 11 chr11 115948360 115948410 -76 Wbp2 protein_coding 0.322746387116434 9.6 1 0 0.997 13 25 12 10 5 9 chr12 74454688 74454738 9359 Slc38a6 retained_intron 0.279259812302482 8.09 1 0 0.21 13 35 10 10 1 5 chr13 69141735 69141785 -3341 Adcy2 protein_coding 0.167010336462191 0.42 2 0 0.335 21 19 14 10 0 10 chr13 97340662 97340712 27997 Col4a3bp protein_coding 0.0450588006503064 18.31 1 0 0.604 15 19 12 13 6 9 chr14 66510063 66510113 26363 1110020C17Rik protein_coding 0.297174901613793 23.67 1 0 0.453 36 21 6 5 0 6 chr14 117783348 117783398 458620 Gpc6 protein_coding 0.268199829934186 18.16 0 1 0.061 12 22 13 13 4 10 chr19 18707256 18707306 829 BC016495 protein_coding 0.0200042944885663 11.9 1 0 0.593 15 15 25 9 3 7 chr3 19126021 19126071 -1734 ENSMUST00000141455 processed_transcript NA NA 0 0 1 20 15 9 7 7 15 chr3 100726133 100726183 33 Trim45 protein_coding 0.980330156921754 0.76 0 0 0.995 15 14 23 13 0 8 chr3 121556937 121556987 -38848 Abcd3 protein_coding 0.146669103309415 8.93 3 0 0.062 22 4 14 15 9 9 chr4 15853842 15853892 -15086 ENSMUST00000157430 snoRNA NA NA 2 0 0.271 18 21 14 15 0 5 chr4 135158847 135158897 19209 ENSMUST00000157554 snRNA NA NA 1 0 0.152 14 5 18 12 7 17 chr5 30426034 30426084 -2311 ENSMUST00000062754 pseudogene NA NA 0 0 0.146 9 8 21 12 5 18 chr5 121017413 121017463 21244 Tpcn1 protein_coding 0.0684611204882474 16.14 0 0 1 11 12 27 10 6 7 chr6 28681381 28681431 100341 Lrrc4 protein_coding 0.338015651851180 4.92 1 0 1 16 22 20 8 1 6 chr6 147703573 147703623 -35625 ENSMUST00000126447 processed_transcript NA NA 2 0 0.076 21 4 21 9 6 12 chr9 62254617 62254667 21166 Coro2b processed_transcript 0.86599626544452 11.8 0 0 0.351 21 13 13 12 4 10 chr13 81467420 81467470 14390 Gpr98 processed_transcript 0.00159703982833558 11.31 2 0 0.576 20 18 16 13 1 5 chr14 17688603 17688653 -37247 Rarb protein_coding 0.863510343154414 6.31 1 0 0.217 12 6 17 14 6 18 chr14 122820393 122820443 -14453 ENSMUST00000156156 lincRNA 0.943623285386758 11.77 0 0 0.074 13 7 16 9 7 21 chr15 10132225 10132275 -10970 Prlr nonsense_mediated_decay 0.0325751283548856 2.68 0 0 0.273 9 35 9 9 7 4 chr19 21348875 21348925 1164 Zfand5 protein_coding 0.0942106606468142 0.91 3 0 1 14 34 5 12 3 5 chr1 135558054 135558104 -122 Zc3h11a protein_coding 0.146022218654700 9.04 2 0 1 22 17 9 5 4 15 chr3 19854097 19854147 -2932 Cp protein_coding 0.0121097250380682 20.03 0 0 1 19 14 15 5 8 11 chr4 101347550 101347600 27177 Leprot protein_coding 0.0256642261130065 5.02 0 0 0.733 15 25 8 14 3 7 chr7 117231675 117231725 12512 Zfp143 protein_coding 0.156718258066324 8 1 0 1 15 12 13 11 10 11 chr8 10793104 10793154 15999 ENSMUST00000071573 retrotransposed NA NA 3 0 0.151 15 6 14 10 10 17 chr8 127225809 127225859 -2014 Ttc13 protein_coding 0.523173390646828 2.24 0 0 0.306 21 18 13 7 8 5 chr8 129260254 129260304 -113872 A630001O12Rik protein_coding NA NA 0 0 0.023 14 26 10 16 4 2 chr11 112653569 112653619 6728 ENSMUST00000100254 protein_coding 0.565716425169696 9.04 1 0 0.233 12 36 11 8 1 4 chr13 72803148 72803198 36663 Irx2 protein_coding 0.73765820960501 19.23 0 0 0.061 17 16 10 11 6 12 chr13 115872184 115872234 -7500 Gm10734 protein_coding NA NA 0 0 0.129 10 23 8 8 3 20 chr14 119406778 119406828 -25 Uggt2 processed_transcript 0.291368020378436 8.59 0 0 0.184 16 18 16 11 5 6 chr15 77084700 77084750 -11744 ENSMUST00000158617 snRNA NA NA 1 0 0.104 11 23 16 11 4 7 chr15 100837302 100837352 -108859 Ankrd33 protein_coding 0.660969003620145 8.86 0 0 0.356 25 18 8 9 4 8 chr19 43887860 43887910 2873 Abcc2 retained_intron 0.474731224158668 11.19 1 0 0.017 22 13 12 9 3 13 chr1 67163214 67163264 -6361 Cps1 protein_coding 0.0894293489540584 21.58 1 0 0.99 15 20 17 9 4 6 chr1 165269115 165269165 -25359 Prrx1 protein_coding 0.199049131667069 17.97 0 0 1 14 19 18 10 1 9 chr2 130753914 130753964 21272 Atrn retained_intron 0.490530266564706 9.24 1 0 0.207 17 21 17 6 0 10 chr3 89055331 89055381 2567 Krtcap2 retained_intron 0.106806745342960 19.03 1 0 1 7 26 17 10 2 9 chr4 128661574 128661624 -7603 Ak2 processed_transcript 0.00276990816630916 10.43 0 0 0.062 20 10 14 10 3 14 chr5 142019826 142019876 22352 ENSMUST00000158539 snRNA NA NA 0 0 0.162 7 6 22 16 6 14 chr9 13486172 13486222 61763 Maml2 protein_coding 0.870344141537827 0.66 1 0 1 13 27 10 4 7 10 chr9 70731639 70731689 31307 protein_coding 0.575298960634273 17.29 2 0 0.041 16 5 19 10 12 9 chr10 75233376 75233426 2718 Ddt protein_coding 0.85421719416328 10.32 0 0 0.03 20 26 10 11 1 3 chr10 82086160 82086210 -329 1190007I07Rik protein_coding 0.557572992715167 22.02 0 1 0.52 19 17 15 4 7 9 chr11 5410033 5410083 -10604 Xbp1 protein_coding 0.0882868194075943 16.81 1 0 0.187 12 17 20 11 3 8 chr11 90250987 90251037 -8 Hlf protein_coding 0.00347982362518568 12.57 0 0 1 13 23 16 8 3 8 chr12 106996061 106996111 -41646 Papola protein_coding 0.740234205832802 15.88 1 0 0.05 21 26 11 7 1 5 chr12 113080913 113080963 28557 Zfyve21 protein_coding 0.294856731208295 9.34 1 0 0.066 20 22 12 9 6 2 chr13 10038297 10038347 -204581 ENSMUST00000157984 miRNA NA NA 0 0 0.11 6 30 6 8 6 15 chr13 63009607 63009657 -19990 Fbp1 protein_coding 0.439723148405963 5.29 0 1 0.858 19 25 9 5 1 12 chr13 115470660 115470710 73240 4930544M13Rik protein_coding 0.98536623966122 16.81 0 0 0.121 11 16 12 19 3 10 chr13 120245190 120245240 -6364 4833420G17Rik protein_coding 0.0568263139151092 9.17 1 0 0.158 12 24 13 9 7 6 chr15 38740011 38740061 -24738 Baalc protein_coding 0.289079182162258 23.72 1 0 0.658 12 28 13 10 3 5 chr17 10512607 10512657 -317 Qk protein_coding 0.106699581058899 21.07 1 0 1 13 38 15 4 1 0 chr18 31791432 31791482 -2568 Sap130 protein_coding 0.0939552391953359 2.88 0 0 0 6 6 18 19 7 15 chr18 34324539 34324589 24029 ENSMUST00000158431 snRNA NA NA 0 0 0 11 7 20 9 3 21 chrX 74754683 74754733 -1644 Tbl1x protein_coding 0.310429676971331 5.46 2 0 1 16 23 12 5 3 12 chr4 154865410 154865460 -44 Gnb1 protein_coding 0.501572888933441 4.73 0 1 1 20 17 11 12 2 8 chr6 28708414 28708464 73308 Lrrc4 protein_coding 0.338015651851180 4.92 1 0 1 13 28 13 9 3 4 chr9 63404228 63404278 46034 Iqch protein_coding 0.369685589737959 10.52 3 0 0.817 20 14 13 7 10 6 chr9 110246420 110246470 -258 Scap protein_coding 0.000992471290731105 5.99 0 0 0.281 11 19 21 10 4 5 chr11 98971932 98971982 -21337 Tns4 protein_coding 0.33400416696072 21.09 1 1 0.76 9 7 28 12 5 9 chr14 68522764 68522814 28840 Dock5 protein_coding 0.0189217951310611 14.07 1 0 1 6 26 11 13 7 7 chr15 67255657 67255707 -247290 St3gal1 protein_coding 0.00360327765096226 21.9 0 0 0.155 20 20 9 12 4 5 chr15 95598531 95598581 -7629 ENSMUST00000058951 pseudogene 0.659910254997897 0.57 2 0 0.781 24 19 9 7 3 8 chr17 29259584 29259634 8465 ENSMUST00000138816 processed_transcript NA NA 1 0 0.37 14 7 21 15 6 7 chr18 68218013 68218063 125127 D18Ertd653e protein_coding 0.200250890013865 4.5 2 0 0.024 11 25 19 7 2 6 chr19 59196455 59196505 -45890 4930506M07Rik protein_coding 0.66052256195528 5.49 0 0 0.01 19 7 21 8 1 14 chr2 38367623 38367673 314 Nek6 protein_coding 0.106852293133734 20.91 0 0 0.047 18 13 10 12 5 11 chr2 49272046 49272096 -18036 ENSMUST00000104581 snoRNA NA NA 0 0 0.142 12 4 15 11 5 22 chr3 60305261 60305311 112 Mbnl1 protein_coding 0.167170478662624 10.2 0 0 0.996 15 25 12 12 2 3 chr4 145741926 145741976 7058 1700029I01Rik protein_coding 0.96525694818934 10.85 0 0 0 13 12 16 13 5 10 chr4 154602682 154602732 -6006 Ski protein_coding 0.00555764248628757 18.85 2 0 0.283 17 19 13 6 4 10 chr5 8873125 8873175 -20567 Abcb4 protein_coding 0.0262821738630428 8.32 0 1 0.038 11 27 8 11 3 9 chr5 136171189 136171239 3675 ENSMUST00000122167 processed_pseudogene 0.272539103214457 1.69 1 0 0.329 9 21 15 8 4 12 chr5 139834856 139834906 6301 protein_coding NA NA 2 0 0.533 9 21 14 14 4 7 chr10 82764642 82764692 2453 Slc41a2 processed_transcript 0.315031208624661 1.22 1 0 0.73 14 19 11 12 5 8 chr13 32856356 32856406 17204 Mylk4 protein_coding NA NA 1 0 0.695 9 16 16 11 3 14 chr13 115471572 115471622 74152 4930544M13Rik protein_coding 0.98536623966122 16.81 0 1 1 13 22 19 8 3 4 chr1 74442746 74442796 1887 ENSMUST00000083534 miRNA NA NA 0 0 0.081 6 22 12 12 7 9 chr1 136084070 136084120 -1608 Chi3l1 retained_intron 0.647296712431428 20.15 1 0 0.071 14 6 11 10 2 25 chr2 24748109 24748159 -5030 Ehmt1 protein_coding 0.00217806362628567 11.02 0 0 0.067 23 15 12 4 7 7 chr2 147797310 147797360 4586 ENSMUST00000129082 processed_transcript 0.715363056658834 8.32 1 0 0.593 16 26 12 7 3 4 chr2 179226049 179226099 47136 Cdh4 processed_transcript 0.0356188781352622 12.71 0 0 0.06 14 6 15 8 2 23 chr4 132641022 132641072 -2988 Gm10151 protein_coding NA NA 2 0 1 25 13 11 8 7 4 chr4 149174038 149174088 -6535 ENSMUST00000119178 processed_pseudogene NA NA 3 0 0.177 12 17 19 7 5 8 chr5 31190973 31191023 -69 Agbl5 protein_coding 0.443905226881854 4.67 0 0 1 19 12 24 8 3 2 chr8 41755354 41755404 -5069 Adam24 protein_coding 0.849063216757458 23.51 1 0 0.873 17 4 16 14 8 9 chr8 117085217 117085267 -117275 Wwox protein_coding 0.000954819231830968 2.53 1 0 1 8 21 17 10 5 7 chr8 129138747 129138797 -21436 Irf2bp2 protein_coding 0.0259458039671114 21.77 1 0 0.026 22 10 10 6 7 13 chr10 94462526 94462576 51327 ENSMUST00000158521 misc_RNA NA NA 0 0 0.071 10 20 19 7 5 7 chr12 100817635 100817685 15609 ENSMUST00000137842 lincRNA NA NA 1 0 0.228 20 25 7 7 5 4 chr13 94459700 94459750 15337 Dmgdh protein_coding 0.100338205483800 0.26 0 1 0.056 12 21 17 9 1 8 chr15 100151841 100151891 -13494 protein_coding 0.260108714848688 17.05 1 0 0.452 24 14 17 7 2 4 chr1 88893227 88893277 -86994 ENSMUST00000120149 processed_pseudogene 0.973928953800417 6.76 0 0 0.389 8 11 11 16 7 14 chr1 127262377 127262427 69680 Actr3 protein_coding 0.0189106969109442 4.46 1 0 0.001 16 6 16 10 6 13 chr2 4698558 4698608 24820 Bend7 processed_transcript 0.779225559744007 17.96 0 0 0.043 11 14 23 11 0 8 chr4 61493712 61493762 2530 Mup5 protein_coding 0.830206245559627 8.47 0 0 0.053 17 9 10 13 6 12 chr6 70824614 70824664 19201 ENSMUST00000083816 snoRNA NA NA 1 0 0.985 7 22 15 12 8 3 chr10 39744644 39744694 405 AI317395 protein_coding 0.0761913196062175 11.02 0 0 0.999 15 18 19 8 1 6 chr13 8769108 8769158 101155 Wdr37 protein_coding 0.125372535461948 7.39 1 0 0 14 3 14 11 12 13 chr13 81468877 81468927 12933 Gpr98 processed_transcript 0.00159703982833558 11.31 2 0 0.047 10 28 13 4 6 6 chr15 10153382 10153432 -334 Prlr protein_coding 0.0325751283548856 2.68 2 0 0.223 17 6 14 13 10 7 chr15 98753212 98753262 -4575 Lmbr1l protein_coding 0.428974933504283 2.42 1 0 0.5 16 20 11 8 4 8 chr19 57435090 57435140 150 ENSMUST00000138723 lincRNA 0.574432215702047 2.49 1 0 0.026 12 24 19 5 3 4 chrX 100746825 100746875 21488 ENSMUST00000083575 miRNA NA NA 0 0 0.485 15 17 20 6 1 8 chr1 162723223 162723273 -179 Rabgap1l protein_coding 0.00962112938119187 12.55 0 0 0.149 10 37 11 4 1 3 chr2 10438286 10438336 -383 ENSMUST00000104761 miRNA NA NA 0 0 0.277 16 13 12 10 4 11 chr2 24965264 24965314 -14620 Noxa1 protein_coding NA NA 1 0 0 11 5 12 14 4 20 chr2 34400342 34400392 -20152 ENSMUST00000119822 processed_pseudogene 0.945667988672626 20.35 1 0 0.404 21 18 8 12 2 5 chr5 27277717 27277767 46507 Dpp6 protein_coding 0.716254661043442 5.41 0 0 0.03 8 10 18 13 8 9 chr5 124285054 124285104 30368 Niacr1 protein_coding 0.953729908641402 14.18 0 0 0 14 21 14 5 3 9 chr6 144001532 144001582 31129 ENSMUST00000156994 processed_transcript 0.765671570077476 19.41 4 0 0.053 13 19 17 7 0 10 chr7 134417734 134417784 -326 Sephs2 protein_coding 0.155561057736722 4.93 1 0 0.255 19 19 12 7 4 5 chr8 23246982 23247032 -4233 Nek3 retained_intron 0.200142256520857 19.11 0 1 0 20 11 16 6 5 8 chr8 34720746 34720796 10674 Ppp2cb protein_coding 0.315864683612125 11.26 2 0 0.148 10 16 12 8 2 18 chr10 58763390 58763440 -22629 P4ha1 protein_coding 0.0558795390034381 18.59 1 0 0.847 12 20 10 10 2 12 chr10 98697150 98697200 -28690 Dusp6 protein_coding 0.141214103884168 21.62 0 0 0.29 18 16 15 10 3 4 chr11 87494446 87494496 13612 ENSMUST00000157167 snRNA NA NA 1 0 1 13 16 17 5 6 9 chr15 10329633 10329683 41334 Prlr protein_coding 0.0325751283548856 2.68 0 0 0.011 17 11 22 10 2 4 chr16 17387411 17387461 18550 Pi4ka retained_intron 0.230699861137522 12.28 0 0 0.234 12 17 13 8 3 13 chr17 4815424 4815474 -126141 protein_coding NA NA 1 0 0 7 6 14 14 5 20 chr3 10298217 10298267 2932 Fabp12 protein_coding 0.0751018416730998 5.74 0 0 0.043 17 15 12 9 1 11 chr5 145131882 145131932 -12926 Baiap2l1 protein_coding 0.35262622446827 17.53 1 0 0.305 12 17 13 10 2 11 chr8 46350550 46350600 -3190 F11 protein_coding 0.524339095626616 20.73 1 0 0.171 15 19 11 9 6 5 chr9 55170567 55170617 2402 Nrg4 processed_transcript 0.00646464089799486 13.31 1 0 0.248 8 13 18 14 1 11 chr10 40720731 40720781 71335 Gpr6 protein_coding 0.779405782378348 15.34 0 0 0 5 6 25 9 7 13 chr11 72989271 72989321 1208 Tmem93 protein_coding 0.056291474748979 11.71 1 0 0.353 18 17 15 5 7 3 chr12 30989724 30989774 52799 Sntg2 processed_transcript 0.097188491907707 8.27 1 0 0.028 10 25 14 6 7 3 chr13 46641551 46641601 27523 ENSMUST00000157288 rRNA NA NA 1 0 0.09 10 15 10 13 9 8 chr14 41914753 41914803 -3892 Mat1a protein_coding 0.492163200541033 22.54 0 0 0.025 21 7 9 9 8 11 chr17 86601609 86601659 34120 Prkce protein_coding 0.0178667759801599 8.94 2 0 0.2 20 12 16 8 5 4 chr18 64644329 64644379 4368 Fech protein_coding 0.0153365878852042 11.85 1 0 0.02 12 18 7 9 1 18 chr1 166633863 166633913 -92957 Dpt protein_coding 0.987146139753031 23.98 1 0 0.978 13 19 15 10 1 6 chr4 53908123 53908173 -10420 ENSMUST00000104230 snoRNA NA NA 0 0 0.033 14 3 17 14 2 14 chr6 119535827 119535877 12214 protein_coding NA NA 1 0 0.14 23 12 8 6 2 13 chr9 114897081 114897131 -5281 Rps27 protein_coding 0.73363671668244 13.99 2 0 0.382 16 11 20 3 3 11 chr10 68675332 68675382 -48 Rhobtb1 protein_coding 0.195152240365296 14.65 0 1 1 10 26 17 5 3 3 chr11 25439176 25439226 80897 processed_transcript 0.100384608886372 21.39 1 0 0.059 3 5 24 7 7 18 chr12 3239642 3239692 3056 protein_coding 0.0208092387265757 10.38 0 0 0 13 6 17 9 2 17 chr13 6059375 6059425 -62603 ENSMUST00000104778 miRNA NA NA 1 0 0.036 16 13 10 14 4 7 chr14 102827274 102827324 -98421 ENSMUST00000104417 snoRNA NA NA 1 0 0 9 12 17 10 4 12 chr18 12374192 12374242 -3154 Npc1 processed_transcript 0.0505608097961268 8.79 0 0 0.363 19 20 12 8 1 4 chr1 39556432 39556482 -19921 ENSMUST00000083695 snoRNA NA NA 0 0 0.006 8 12 20 5 1 17 chr1 90315636 90315686 12125 Spp2 protein_coding 0.311683543512657 5 1 0 0.061 10 14 12 16 5 6 chr6 59022295 59022345 -26927 ENSMUST00000104164 snoRNA NA NA 1 0 0.466 15 25 12 3 3 5 chr8 106672162 106672212 -22226 Bean protein_coding 0.644533973529116 23.11 0 0 0.004 11 11 16 6 2 17 chr10 118196014 118196064 -101843 4932442E05Rik protein_coding 0.668350665381709 3.26 2 0 1 16 22 15 5 3 2 chr12 100189639 100189689 8135 Ttc8 protein_coding 0.463113734581399 4.94 0 0 0.216 25 15 11 5 0 7 chr12 104918248 104918298 -4599 protein_coding NA NA 0 0 0.954 13 22 10 7 4 7 chr15 75141847 75141897 43021 Ly6f protein_coding 0.605506828000802 14.5 0 1 0.026 11 10 16 16 5 5 chr15 96859941 96859991 26421 Slc38a4 protein_coding 0.0891367801056864 8.76 2 0 0.056 19 17 6 6 8 7 chr17 25270369 25270419 55 Clcn7 protein_coding 0.0731540082585268 6.09 0 0 1 15 13 19 9 2 5 chr17 73186938 73186988 921 Ypel5 protein_coding 0.00065897269804258 10.6 0 0 0.998 9 24 13 10 4 3 chrX 13038884 13038934 -4327 Nyx protein_coding 0.502251450854857 15.96 0 0 0.928 14 22 15 7 2 3 chr3 36894843 36894893 -11240 4932438A13Rik protein_coding 0.304434132085496 19.61 0 0 0 15 3 18 11 2 13 chr3 129000058 129000108 35584 Enpep protein_coding 0.4864041182806 4.35 0 0 0.064 18 14 12 7 1 10 chr6 31134664 31134714 13142 AB041803 protein_coding 0.0359894366809084 5.19 0 0 0.999 7 23 11 8 9 4 chr7 87782074 87782124 1196 ENSMUST00000142678 processed_transcript NA NA 0 0 0.032 13 11 12 13 7 6 chr8 130874378 130874428 -8738 ENSMUST00000122574 miRNA NA NA 0 0 0.145 16 19 11 7 3 6 chr9 42316544 42316594 -677 Tbcel protein_coding 0.0146484092272636 4.46 2 0 1 13 29 5 6 2 7 chr9 68120866 68120916 -7490 ENSMUST00000158185 snoRNA NA NA 0 0 0.145 12 11 18 5 5 11 chr9 103723796 103723846 -59689 Tmem108 protein_coding 0.123285399806415 9.64 0 0 0.422 10 15 10 6 5 16 chr10 5797705 5797755 15816 processed_transcript NA NA 0 0 0.839 10 8 4 17 9 14 chr11 97294443 97294493 -3131 Arhgap23 processed_transcript 0.0999068571693034 14.35 1 0 0.028 17 16 13 7 4 5 chr13 25078155 25078205 3210 protein_coding NA NA 2 0 0.559 19 17 12 9 0 5 chr13 70085725 70085775 60742 ENSMUST00000091512 retrotransposed 0.182057524310778 12.35 0 0 0.765 5 35 7 5 1 9 chr13 110597806 110597856 50402 Pde4d processed_transcript 0.149094919968117 6.33 2 0 0.25 15 22 3 5 5 12 chr16 93604347 93604397 -64 Setd4 processed_transcript 0.0570743042940783 7.3 0 0 0.434 2 18 21 9 5 7 chr1 189297646 189297696 -134999 Esrrg protein_coding 0.664279070301072 4.63 1 0 0 5 14 15 7 3 17 chr5 38891355 38891405 1938 Slc2a9 protein_coding 0.0145672452046098 5.97 1 0 0 11 19 14 7 4 6 chr5 54451341 54451391 -14610 Stim2 processed_transcript 0.074344298795613 12.71 1 0 0.412 15 11 14 13 3 5 chr5 132604851 132604901 412817 Auts2 protein_coding 0.0229513908482622 2.5 0 0 0.715 3 19 17 13 0 9 chr7 20518736 20518786 -12299 Pvr protein_coding 0.00204892198280291 11.8 1 0 0.114 15 16 14 8 4 4 chr7 27561939 27561989 10390 Cyp2b19 retained_intron 0.405219365222217 20.02 0 0 0 14 5 16 4 8 14 chr8 71236417 71236467 22559 Csgalnact1 protein_coding 0.0503936280077948 4.85 1 0 0.154 13 9 15 4 3 17 chr17 75906185 75906235 33702 Fam98a retained_intron 0.505323402632856 14.66 1 0 0.292 7 28 9 8 3 6 chr3 129118904 129118954 -83262 Enpep protein_coding 0.4864041182806 4.35 0 1 0.068 7 13 19 10 4 7 chr4 44212026 44212076 29133 Rnf38 processed_transcript 0.173789321501576 6.65 0 0 0.142 7 25 15 6 3 4 chr9 41212465 41212515 -64866 ENSMUST00000082975 snRNA NA NA 1 0 0.088 7 9 18 9 2 15 chr10 120887868 120887918 25440 Rassf3 protein_coding 0.0158860656588318 7.27 0 0 0.136 7 13 20 9 2 9 chr13 20012822 20012872 74825 ENSMUST00000091762 retrotransposed 0.926021134916091 11.67 0 0 0.185 8 8 9 9 5 21 chr13 25734859 25734909 38128 ENSMUST00000121436 pseudogene NA NA 0 0 0.131 4 10 17 10 7 12 chr16 3254125 3254175 4566 ENSMUST00000116737 miRNA NA NA 0 0 0.034 12 3 15 11 6 13 chr16 69200409 69200459 298293 ENSMUST00000157663 misc_RNA NA NA 0 0 0 17 3 12 4 2 22 chr17 86924576 86924626 6543 ENSMUST00000086477 pseudogene NA NA 1 0 0.945 20 11 11 9 4 5 chr19 60043507 60043557 -24265 Rab11fip2 protein_coding 0.183437815329622 19.53 1 0 0.156 13 2 15 12 3 15 chr1 138792678 138792728 64301 Nr5a2 protein_coding 0.362674230869975 23.83 0 0 0.325 15 21 10 6 2 5 chr2 126857766 126857816 -17256 Ap4e1 processed_transcript 0.299154117045288 12.44 0 0 0.263 7 19 11 6 4 12 chr7 116072512 116072562 1135 Nlrp10 protein_coding 0.626417288541558 20.34 0 0 0 10 9 8 17 1 14 chr10 17373773 17373823 -69234 Cited2 protein_coding 0.4921575047407 2.82 0 0 0.067 13 18 14 7 1 6 chr12 110410773 110410823 -104371 Begain protein_coding NA NA 1 0 0 14 9 12 5 9 10 chr13 34384102 34384152 -15006 ENSMUST00000157948 misc_RNA NA NA 1 0 0.194 14 13 13 6 1 12 chr16 70353459 70353509 29146 4930423O20Rik protein_coding 0.988310507200148 3.51 0 1 0.481 8 24 10 13 2 2 chr17 7046330 7046380 -1328 ENSMUST00000158268 miRNA NA NA 1 0 0 16 17 11 8 2 5 chr17 73193843 73193893 7826 Ypel5 protein_coding 0.00065897269804258 10.6 1 0 0.118 13 15 11 6 2 12 chr18 84018007 84018057 165097 Tshz1 protein_coding 0.0947075266731849 12.55 0 0 0.068 11 15 8 13 6 6 chr19 57648157 57648207 -37342 Atrnl1 protein_coding 0.125611635715230 10.45 0 0 0.146 9 2 23 9 3 13 chr2 120365771 120365821 -10559 ENSMUST00000117384 processed_pseudogene NA NA 1 0 1 16 6 12 13 0 11 chr4 47842507 47842557 -91095 ENSMUST00000158724 snoRNA NA NA 0 0 0.169 8 10 19 5 3 13 chr6 51061788 51061838 158096 ENSMUST00000083571 miRNA NA NA 1 0 0.252 9 5 17 8 5 14 chr8 72963133 72963183 316 Crtc1 retained_intron 0.816197142626118 20.97 1 0 0.302 12 12 15 9 2 8 chr8 88555110 88555160 190234 Phkb protein_coding 0.57629415668665 6.52 1 0 0.008 4 10 13 13 8 10 chr9 30694091 30694141 35921 Adamts15 protein_coding 0.847284265904223 11.37 0 0 0.396 14 22 8 6 5 3 chr14 117723583 117723633 398855 Gpc6 protein_coding 0.268199829934186 18.16 1 0 0.123 6 22 19 5 3 3 chr17 5083102 5083152 28992 ENSMUST00000122283 unprocessed_pseudogene NA NA 0 0 0.168 6 7 11 11 7 16 chr2 44783060 44783110 92 Gtdc1 protein_coding 0.127892756136519 5.87 0 0 0.886 17 7 18 7 4 4 chr3 62156963 62157013 14289 4631416L12Rik protein_coding 0.00246980239493869 11.96 1 0 0.178 12 18 8 8 0 11 chr3 100490197 100490247 -796 Man1a2 protein_coding 0.253551029709058 17.2 1 0 0.57 8 18 11 11 4 5 chr6 124427962 124428012 -13175 Clstn3 protein_coding 0.28234012326166 22.81 1 0 0.146 14 14 13 9 1 6 chr10 89028137 89028187 -31832 Nr1h4 protein_coding 0.349284723889203 13.01 1 1 0.035 14 9 17 7 2 8 chr15 35817409 35817459 47652 Cox6c nonsense_mediated_decay 0.696974437596542 12.52 1 0 0.196 13 19 5 7 6 7 chr15 58725004 58725054 4184 Rnf139 protein_coding 0.411208250309172 17.22 1 0 0.101 9 6 14 10 3 15 chr17 44217063 44217113 1260 Enpp5 nonsense_mediated_decay 0.242598952483293 6.4 2 0 0 10 5 15 7 0 20 chr3 121473285 121473335 44804 Abcd3 protein_coding 0.146669103309415 8.93 0 0 0.143 5 9 11 14 10 7 chr8 129181065 129181115 -63754 Irf2bp2 protein_coding 0.0259458039671114 21.77 1 0 0.134 14 6 14 12 2 8 chr9 108502466 108502516 -2560 P4htm protein_coding 0.244303749826414 8.67 0 0 0.481 22 14 10 6 0 4 chr10 111257334 111257384 -152481 Krr1 protein_coding 0.0926738591123333 17.41 0 0 0.214 4 19 11 9 2 11 chr11 38575825 38575875 35929 ENSMUST00000093736 snRNA NA NA 1 0 0.53 13 18 9 8 3 5 chr11 68910639 68910689 -1786 Per1 protein_coding 0.0276212817635928 11.19 0 0 1 7 18 13 9 2 7 chr11 102402903 102402953 -4088 ENSMUST00000119782 processed_pseudogene NA NA 1 0 0.467 17 15 5 6 6 7 chr14 21789731 21789781 40765 protein_coding NA NA 0 0 0.173 9 7 10 12 6 12 chr17 43458789 43458839 51536 Gpr110 protein_coding 0.0407777354826671 0.81 0 0 0.032 4 2 13 12 2 23 chrX 133276551 133276601 149 ENSMUST00000125022 processed_transcript 0.164763955148444 19.95 1 0 0.984 8 25 9 6 2 6 chr5 148242949 148242999 509 Pan3 protein_coding 0.343794429901403 9.48 0 0 1 7 27 10 5 0 6 chr6 71786394 71786444 5012 Immt protein_coding 0.744642876602964 7.79 2 0 0 17 20 4 7 1 6 chr6 115987447 115987497 -42449 Plxnd1 protein_coding 0.591219980108263 5.82 1 0 1 9 13 19 7 3 4 chr8 112785798 112785848 -5054 Hydin protein_coding 0.884995415208902 13.8 1 0 0.251 7 14 10 15 5 4 chr16 62322664 62322714 -248173 ENSMUST00000093663 snRNA NA NA 0 0 0.193 7 6 18 9 4 11 chr17 63531113 63531163 -20949 ENSMUST00000158228 snoRNA NA NA 1 0 0.107 17 7 8 9 3 11 chr2 79832023 79832073 46619 Pde1a protein_coding 0.417059604628544 3.61 1 0 0.968 6 25 11 4 0 8 chr3 100005577 100005627 39135 Gdap2 processed_transcript 0.667812449055116 1.24 0 0 0.453 14 14 7 12 1 6 chr9 14592006 14592056 2885 Mre11a protein_coding 0.584114377890442 3.92 0 0 0.038 11 17 6 8 5 7 chr9 25683613 25683663 -63078 ENSMUST00000116956 miRNA NA NA 0 0 0 6 12 8 5 2 21 chr10 21477760 21477810 67134 Gm5420 protein_coding NA NA 0 0 0.039 5 21 9 9 3 7 chr19 54274048 54274098 154350 Adra2a protein_coding 0.0700747759521923 5.14 0 0 0.568 9 6 15 10 3 11 chr2 134373901 134373951 6117 Hao1 processed_transcript 0.459542185859853 14.67 1 0 1 15 16 13 5 3 1 chr13 102466986 102467036 -4768 Pik3r1 protein_coding 0.0148001546822855 15.05 2 0 0.233 10 26 9 2 3 3 chr17 51654143 51654193 227423 Satb1 retained_intron 0.0428794917719066 3.32 1 1 0.096 19 9 7 7 9 2 chr4 108778784 108778834 1827 Osbpl9 protein_coding 0.0208144861853520 10.59 1 0 0.023 7 8 13 13 4 7 chr9 20799521 20799571 -7635 Mrpl4 protein_coding 0.0327256734999088 21.46 1 0 0.194 20 12 7 7 5 1 chr10 6858164 6858214 -51888 Iyd protein_coding 0.921928676094408 3.74 0 0 0.071 10 1 17 10 3 11 chr14 52562555 52562605 -20225 Rnase13 protein_coding NA NA 1 0 0.028 13 14 10 9 3 3 chr15 57162203 57162253 -65512 BC026439 protein_coding 0.974640676144347 22.03 0 0 0 7 5 21 6 6 7 chr4 131565883 131565933 -2555 Epb4.1 protein_coding 0.0389321210003633 12.67 1 0 0.253 9 12 7 16 1 6 chr7 91302434 91302484 1591 ENSMUST00000156557 lincRNA NA NA 1 0 0.728 17 2 13 10 3 6 chr18 56562362 56562412 2248 Gramd3 protein_coding 0.381654502242953 5.67 0 0 0.112 13 5 13 9 3 8 chr1 59232005 59232055 -13633 Mpp4 protein_coding 0.916566627178211 13.63 0 0 0.263 8 6 14 9 4 9 chr1 89945840 89945890 -6098 Ugt1a6a protein_coding 0.132008333482177 8.63 2 0 0.12 15 11 12 4 0 8 chr3 18243253 18243303 -99940 Cyp7b1 protein_coding 0.146641167379976 15.87 0 0 0.156 4 18 13 5 3 7 chr11 74739089 74739139 46 Srr protein_coding 0.0901764894657373 20.38 2 0 0.994 16 12 7 8 2 5 chr13 115823682 115823732 -56002 Gm10734 protein_coding NA NA 0 0 0.156 13 9 5 12 4 7 chr14 117937911 117937961 513471 Dct protein_coding 0.538829145969179 4.6 1 0 0.998 9 5 7 11 1 17 chr15 84576755 84576805 -26084 ENSMUST00000133424 lincRNA 0.0213543469030934 3.91 0 0 0.361 7 6 7 9 5 16 chr3 121920438 121920488 13724 protein_coding 0.533620198491125 4.22 1 0 0.102 9 6 13 5 8 8 chr8 119859484 119859534 -13561 4933407C03Rik protein_coding 0.0352247559344476 7.69 0 0 0.965 11 10 16 4 2 6 chr10 31245708 31245758 -80006 Tpd52l1 protein_coding 0.669060699492709 9.68 0 1 0.025 7 19 7 7 3 6 chr1 67172216 67172266 2641 Cps1 protein_coding 0.0894293489540584 21.58 0 0 0.203 9 14 9 6 3 7 chr8 82025278 82025328 -101886 Smad1 protein_coding 0.367532278061301 0.03 0 1 0.448 13 11 6 11 2 5 chr14 105315728 105315778 -54891 ENSMUST00000104237 snoRNA NA NA 0 0 0.336 8 17 5 3 5 10 chr19 4632320 4632370 -6728 Rce1 protein_coding 0.651078672885182 18.02 1 0 0.218 9 17 9 5 4 4 chr3 4997303 4997353 -217234 Gm10748 protein_coding NA NA 1 0 0 0 18 8 8 6 7 chr5 104606387 104606437 6681 Dspp protein_coding 0.0251808066208312 0.28 0 0 0.041 6 9 16 6 2 8 chr11 102878519 102878569 -62 Dcakd protein_coding 0.451607292062429 3.32 0 1 0.56 17 7 9 5 3 6 chr13 72074130 72074180 27016 Irx1 protein_coding 0.274637775565262 20.24 0 0 0.116 11 21 6 2 1 6 chr14 96835544 96835594 -8605 ENSMUST00000083108 snRNA NA NA 0 0 0.175 8 18 7 5 4 5 chr3 135006889 135006939 -4087 Nhedc1 protein_coding 0.0388969167799177 23.11 1 0 0.47 13 4 11 11 3 4 chr11 103383575 103383625 -17689 Lrrc37a protein_coding NA NA 0 0 0 6 7 11 6 4 12 chr1 50463196 50463246 -153385 ENSMUST00000122582 misc_RNA NA NA 0 0 0 3 2 12 2 9 17 chr7 35657204 35657254 -40214 Pepd protein_coding 0.490631947067208 22.39 0 0 0.031 7 14 6 8 5 5 chr5 68410663 68410713 -12386 Grxcr1 protein_coding NA NA 0 0 0.065 2 7 11 13 3 8 chr3 129903635 129903685 -4723 ENSMUST00000083854 snRNA NA NA 0 0 0.314 6 11 3 14 4 5 chr12 76077882 76077932 200412 Kcnh5 protein_coding 0.307874674872918 23.12 0 0 0.212 7 6 7 5 3 15 chr2 52162340 52162390 23768 ENSMUST00000158984 miRNA NA NA 1 0 0.38 5 9 7 10 2 9 chr2 86758165 86758215 5497 Olfr1098 protein_coding NA NA 1 0 0 13 6 6 7 3 7 chr7 113404457 113404507 -45628 Gvin1 protein_coding 0.698059978731525 21.28 0 0 0 6 7 13 8 3 4 chr18 87491421 87491471 -434233 protein_coding 6.53737089406197e-06 23.98 0 0 0 12 6 4 13 3 3