Bcd Rajewsky_BMC_Bioinformatics_2002 A | 2 5 3 27 30 0 1 3 4 2 6 C | 10 12 0 0 0 0 29 13 15 9 14 G | 10 4 0 3 0 7 0 3 11 13 6 T | 8 9 27 0 0 23 0 11 0 6 4 TCTGAGCTCCG CCTAATCTGGC TCTAATCTCGC CTTAAGCTCGC CGTAATCTGCT TTTAATCCGTT AATAATCCAGC CTTAATCACCA TTAAATCCCTC GTTAATCTCCG CTAAATCCGGC GTTAATCCGTT AATAATCTCGC TATAATCGCAC GCTAATCCCAG CGTAATCCCCA TCTAATCCAGA TCTAATCCCTT GCTAAGCTGGC GCTAAGCTCCC GATGATCCGGG CCTAAGCCAGC CGAAATCGCTG CCTAATCGCGG GCTGATCCCGC CCTAAGCTGCA GATAATCTGCA GTTAATCAATA TGTAATCAGGC GTTAAGACGCC Cad Rajewsky_BMC_Bioinformatics_2002 A | 0 12 6 4 0 1 2 0 5 8 8 6 4 4 C | 12 3 1 6 0 1 1 0 0 3 1 0 9 9 G | 4 5 8 1 1 1 0 1 0 0 11 12 3 0 T | 5 1 6 10 20 18 18 20 16 10 1 3 5 8 CAGTTTTTTACGAT CGGGTTTTACGACC CCGTTTTTTAAGCC GAACTGATTTGAAC CAACTCTTTCGGGT CGGATTTTACAACC TAAAGTTTTTGACC CGATTTTTTAAAAT TGTTTTTTTTAGAA TCTTTATTTTGGCA GAATTTATTAGGTT CACATTTTTTGATT CTGTTTTTTAAGCC CATCTTCTTTATCT TATCTTTTTAAGTC GATTTTTTATGGGA CAGTTTTTTTTTTC CGTCTTTGTAAGTT TCGCTTTTATGGCC GAAATTTTTAGGGA CAGTTTTTATGTCT Hb Rajewsky_BMC_Bioinformatics_2002 A | 17 0 0 0 0 1 11 7 3 11 5 8 C | 12 0 1 1 0 0 3 8 6 11 9 18 G | 14 4 0 0 0 0 5 8 25 7 10 4 T | 0 39 42 42 43 42 24 20 9 14 19 13 AGTTTTTTGTTT ATTTTTGTGCCC CTCTTTACGGTT CTTCTTTGTTCC ATTTTTATGGGT CGTTTTTTGTTC CTTTTTTCGCTG GTTTTTTTCCCC ATTTTTTAATTC GTTTTTAAGATC GTTTTTACGAGC CTTTTTATGATC ATTTTTTTGCTT CTTTTTCTTTTC ATTTTTTCAGAC GTTTTTTCGCGA GTTTTTTTTTTC GTTTTTAAGAGA ATTTTTTGTTGT GTTTTTACTTTG ATTTTTTGCATT GTTTTTATGACT ATTTTTTTGCGC ATTTTTTTGGCC ATTTTTTGTTTC CGTTTTGCGTTT GTTTTTTGGCAT GTTTTTTGGGCA CTTTTTAAGCTA ATTTTTTTCCCA GTTTTTTTTTTT GTTTTTGTTAAG CTTTTTCACTCC CTTTTTGGCTTT CTTTTTATGAAT ATTTTATTGAGT ATTTTTGTATGC ATTTTTTATAAC GTTTTTTTGCTA CTTTTTCCGCGG GGTTTTTGGGTA ATTTTTTTGGCA ATTTTTAACAGC Kni Rajewsky_BMC_Bioinformatics_2002 A | 5 11 11 9 18 18 11 4 2 14 17 13 10 7 19 C | 0 1 3 0 5 2 14 13 3 0 0 12 0 11 1 G | 7 8 12 13 4 0 1 7 8 9 10 1 10 5 5 T | 15 7 1 5 0 7 1 3 14 4 0 1 7 4 2 TAGAAAACTAGATCA AGAGCACCGGGCACA TGGGAAATGGGAACG TAGGAAAGTAGATCA AAAAAAACTAGCGCA GTGTAACTGAACTAA GAGGATCGTAAAAAA GGAGGTCGTAAAACC TAAAAAACGGACGGA GAGGATGGCAGAGCA TTTGAACTGAACGGG TTGACACCGAACTGA TCATAAAGTAGATCT TTCGACCCGGGATCG TAAAAAACGGACGGA TGAGAACCCGAAAGA TGGAACAATAAAGTT AAAAATCGCTACACA TGCACTTCTAAAAAA GTAGGAACTTAAGCG GAGAAACCTAATAAA TAGGCAAAAGGCTTA AGATGTCCTTAGGAA TGGGAACAAGACAAA ATATCACGTGGCGTG TTGTGAACTTACAAA GACGATCATAAAGTA Kr Rajewsky_BMC_Bioinformatics_2002 A | 10 19 17 12 0 4 3 0 0 C | 3 1 2 6 0 0 2 0 2 G | 7 0 0 1 20 16 15 2 0 T | 0 0 1 1 0 0 0 18 18 AAACGGATT GACCGGGTT GAAGGGATT AACTGGGTT AAACGGGTT CAAAGAGTT CCACGGATT GATAGAGTT GAAAGAGGT CAACGGGTT GAAAGGCTT GAACGGGTC GAAAGAGTT AAAAGGCTT AAAAGGGTT AAAAGGGGC AAAAGGGTT AAAAGGGTT AAAAGGGTT AAAAGGGTT Tll Rajewsky_BMC_Bioinformatics_2002 A | 12 1 1 5 2 11 1 0 0 C | 8 2 2 1 3 1 17 2 3 G | 0 2 1 0 15 5 0 1 2 T | 0 15 16 14 0 3 2 17 15 CTTTAACTT ATTAAATTT ATTTGTCTG ATTACGCCC CTCCGGCTT ATTTGACTT CTTAGGATT AGTTGCCTT ATTAGACTC CTTTCACCC CATTGTCTT CTTTGGCGG ATTAGTTTT ATATGGCTT ATGTCACTT ATTTGACTT AGCTGACTT CCTTGACTT ATTTGACTT CCTTGACTT TorRE Rajewsky_BMC_Bioinformatics_2002 A | 0 0 0 0 0 6 6 0 0 6 6 C | 0 1 5 0 5 0 0 0 0 0 0 G | 0 4 1 0 0 0 0 1 6 0 0 T | 6 1 0 6 1 0 0 5 0 0 0 TCCTCAAGGAA TGCTCAATGAA TGCTCAATGAA TGCTCAATGAA TGCTCAATGAA TTGTTAATGAA Ftz Papatsenko_Genome_Res_2002 A | 1 1 0 19 22 1 3 5 5 1 C | 2 7 0 1 0 0 0 1 7 11 G | 9 3 2 0 0 2 6 11 6 2 T | 10 11 20 2 0 19 13 5 4 8 TGTAATTGCT CCTAATTGTG GTTAATTGAC TTTAATTGAC GCTAATTGGC TTTAATGGCC TTGAATTGCC TCGAATTGTC GTTAAGTGCT GTTAAGTGCC ATTAATTCCT TCTAATTAGC TTTAATTTGT CATAATTTTT GGTAATATAG GCTAATAAAA GCTAATGAGC GTTAATGATC GGTAAAAGAT TCTCATGTGT TTTTATGACC TTTTATGTGT Prd_HD Papatsenko_Genome_Res_2002 A | 1 0 0 1 2 0 7 7 0 0 0 2 0 0 2 C | 2 1 1 1 1 1 0 0 0 0 0 3 3 1 0 G | 2 4 2 4 2 0 0 0 0 1 3 1 2 2 2 T | 2 2 4 1 2 6 0 0 7 6 4 1 2 4 3 GTGGCTAATTGCCCA CGTCATAATTGCGGT GGTGTTAATGGTTTG ACTGTCAATTTCCGG CGTTATAATTTATTT TTGAGTAATTTGCTA TGCGGTAATTTAGTT Ttk Papatsenko_Genome_Res_2002 A | 3 0 0 1 4 7 0 0 7 0 3 2 2 C | 2 1 3 5 3 0 0 0 0 6 2 2 3 G | 1 3 3 1 0 0 7 7 0 0 2 0 0 T | 1 3 1 0 0 0 0 0 0 1 0 3 2 CTGCAAGGACATT TTGCCAGGACCTC AGCCAAGGACACA ATCCAAGGACGAA AGTCAAGGATGCC GCGGCAGGACAAT CGCACAGGACCTC Dstat Yan_cell_1996 A | 0 0 0 2 4 3 0 30 30 C | 0 0 30 21 14 4 0 0 0 G | 0 0 0 4 11 20 30 0 0 T | 30 30 0 3 1 3 0 0 0 Eve_HD Hoey_MCB_1988 A | 1 1 6 4 0 0 6 6 3 0 C | 0 5 0 0 0 1 0 0 2 1 G | 0 0 0 0 0 0 0 0 0 0 T | 5 0 0 2 6 5 0 0 1 5 TAAATTAAAT TCAATTAAAT TCAATCAATT ACATTTAACT TCAATTAACC TCATTTAAAT Hairy Van_Doren_genes_dev_1994 A | 12 19 0 80 0 3 0 0 36 5 C | 16 15 96 12 100 1 83 12 41 61 G | 56 58 0 0 0 93 7 71 18 24 T | 16 8 4 8 0 3 10 17 5 10 Runt_selex Melnikova_J_virol_1993 A | 8 0 2 0 0 4 2 C | 36 0 151 0 0 5 35 G | 7 200 5 200 200 1 2 T | 149 0 42 0 0 190 161 Eve_t2 A | 0 0 2 2 0 6 0 0 6 0 0 4 4 3 C | 6 0 4 1 7 3 0 10 2 5 9 0 2 0 G | 0 6 2 0 2 0 10 0 2 4 0 6 0 2 T | 4 4 2 7 1 1 0 0 0 1 1 0 4 5 TGTCCCGCCTCGTT from eve_1 TGCTGAGCGGCGAT from eve_2 reverse complement CGCTCAGCACCGAG from eve_3 CTCTCAGCACCGCA from eve_4 CGATTAGCACCGTT from eve_5 TTATCAGCGGCATT from Ubx_B CGGTCAGCACTATG from Ubx_D reverse complement CTTACCGCAGCAAA from eve_mas_hydei reverse complement TGGTGTGCCCCGCT from eve_D CTCACCGCAGCAAA from eve_P reverse complement >eve_1 Hoey_MCB_1988 TTTGTCCCGCCTCGTTATC >eve_2 Hoey_MCB_1988 GTTATCGCCGCTCAGCACC >eve_3 Hoey_MCB_1988 GCCGCTCAGCACCGAGAGC >eve_4 Hoey_MCB_1988 CACTCTCAGCACCGCACGA >eve_5 Hoey_MCB_1988 CACGATTAGCACCGTTCCG >Ubx_B Biggin_Cell_1989 ttgttttattatccacattatcagcggcattattgttattattggccc >Ubx_D Biggin_Cell_1989 CTCGTAAGCGTTACGATTATTACTATGTTTATTGTTATTGCAATTATTATTATTATTTTTATGGTTTTAACGATTTGAACGATTATTAGCCATAGTGCTGACCGAA >eve_mas_hydei Fujioka_Development_1996 ggagcaaccaaaatattatggtgttccctgctgttagcgcacagtcgatgcgaatttgctgcggtaagatgttgctgcttgttcgtca >eve_D Jiang_Genes_Dev_1991 aaccaaaatattatggtgtgccccgctgtt >eve_P Jiang_Genes_Dev_1991 tcgcacagtcagcgcgaatttgctgcggtgagtcgatgctgtt Ftzf1 A | 0 0 9 9 0 0 5 0 6 1 2 2 3 C | 6 7 0 0 0 0 1 8 0 7 5 0 5 G | 1 2 0 0 9 9 0 0 3 0 0 6 1 T | 2 0 0 0 0 0 3 1 0 1 2 1 0 TCAAGGTCGCCGA from ftz_I CCAAGGCCACCAA from ftz_II CCAAGGTCACCGC from ftz_III GCAAGGACATTTC from ftz_IV CGAAGGACACTGC from en_nhr1 reverse compliment CGAAGGTCACCGC from en_nhr2 reverse compliment CCAAGGACACAGG from ftz_prox1 TCAAGGATGCCGA from ftz_prox2 reverse compliment CCAAGGACGAAAC from ftz_prox3 >ftz_I Ueda_genes_dev_1990 gcagcaccgtctcaaggtcgccgagtaggagaa >ftz_II Ueda_genes_dev_1990 caccccgccgcccaaggccaccaagcgcaaggc >ftz_III Ueda_genes_dev_1990 cgccgtaaccaccaaggtcaccgccagccccgc >ftz_IV Ueda_genes_dev_1990 tctccgtgcctgcaaggacatttcgccggaggg >en_nhr1 Florence_dev_1997 CTAATTGTGGCAGTGTCCTTCGGATTTATGACA >en_nhr2 Florence_dev_1997 TGTGCGTGAGCGGTGACCTTCGACCTGAGGATC >ftz_prox1 Han_MCB_1993 Yu_nature_1997 tcgaacagaagccaaggacacaggcgacgcgtg >ftz_prox2 Han_MCB_1993 Yu_nature_1997 agcgtttcggcatccttgactttgattggtgccga >ftz_prox3 Han_MCB_1993 Yu_nature_1997 tccaaggacgaaacgctatatccacc Gt A | 1 3 0 0 6 0 0 1 5 4 2 6 C | 0 0 0 0 0 6 0 1 1 1 1 0 G | 0 0 0 3 0 0 4 0 0 0 1 0 T | 5 3 6 3 0 0 2 4 0 1 2 0 TATGACGCAAGA Kr CD1 Capovilla_dev_1992 TTTTACGTAACA Kr CD2 Capovilla_dev_1992 ATTGACTAATAA eve-1430 Capovilla_dev_1992 TATGACTTCCTA eve-1100 Capovilla_dev_1992 TTTTACGTAATA iab-2_1.7 Shimell_dev_bio_2000 TATTACGTAAAA iab-2_1.7 Shimell_dev_bio_2000